Multiple sequence alignment - TraesCS6A01G107500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G107500 chr6A 100.000 4362 0 0 1 4362 76091115 76095476 0.000000e+00 8056.0
1 TraesCS6A01G107500 chr6A 88.844 735 71 5 2732 3456 76045028 76044295 0.000000e+00 893.0
2 TraesCS6A01G107500 chr6A 86.452 775 94 8 1972 2739 76087496 76086726 0.000000e+00 839.0
3 TraesCS6A01G107500 chr6A 89.957 468 46 1 1047 1514 76090140 76089674 1.740000e-168 603.0
4 TraesCS6A01G107500 chr6A 86.877 381 34 5 1563 1928 76089673 76089294 3.140000e-111 412.0
5 TraesCS6A01G107500 chr6A 82.934 334 35 9 3748 4064 76044372 76044044 9.240000e-72 281.0
6 TraesCS6A01G107500 chr6A 96.429 140 5 0 43 182 76090569 76090430 9.430000e-57 231.0
7 TraesCS6A01G107500 chr6A 80.426 235 39 6 929 1160 76090429 76090199 5.800000e-39 172.0
8 TraesCS6A01G107500 chr6A 100.000 50 0 0 1 50 76090974 76090925 4.640000e-15 93.5
9 TraesCS6A01G107500 chr6B 92.557 3399 218 14 995 4362 133358008 133354614 0.000000e+00 4843.0
10 TraesCS6A01G107500 chr6B 91.852 3277 191 21 671 3889 133438700 133441958 0.000000e+00 4503.0
11 TraesCS6A01G107500 chr6B 90.296 1113 89 10 2182 3283 133170667 133169563 0.000000e+00 1439.0
12 TraesCS6A01G107500 chr6B 95.178 477 21 2 3887 4362 133442363 133442838 0.000000e+00 752.0
13 TraesCS6A01G107500 chr6B 85.499 531 59 5 1670 2185 133322521 133321994 4.960000e-149 538.0
14 TraesCS6A01G107500 chr6B 90.526 190 16 2 3268 3456 133167881 133167693 2.600000e-62 250.0
15 TraesCS6A01G107500 chr6B 84.188 234 22 6 1670 1888 133170897 133170664 3.420000e-51 213.0
16 TraesCS6A01G107500 chr6D 88.991 2725 220 33 777 3453 59733651 59736343 0.000000e+00 3297.0
17 TraesCS6A01G107500 chr6D 89.289 2502 206 20 999 3456 59720434 59717951 0.000000e+00 3079.0
18 TraesCS6A01G107500 chr6D 94.268 628 34 2 144 769 59732762 59733389 0.000000e+00 959.0
19 TraesCS6A01G107500 chr6D 85.552 353 34 8 3732 4072 59736254 59736601 1.930000e-93 353.0
20 TraesCS6A01G107500 chr6D 90.870 230 18 3 3494 3723 59744159 59744385 5.480000e-79 305.0
21 TraesCS6A01G107500 chr6D 98.958 96 1 0 1 96 59732667 59732762 5.800000e-39 172.0
22 TraesCS6A01G107500 chr3B 80.430 2417 383 48 998 3362 470029582 470031960 0.000000e+00 1760.0
23 TraesCS6A01G107500 chr3B 83.534 249 32 7 3455 3697 417905071 417904826 1.580000e-54 224.0
24 TraesCS6A01G107500 chr7A 84.362 243 29 9 3461 3697 523370232 523370471 3.390000e-56 230.0
25 TraesCS6A01G107500 chr4B 84.362 243 29 9 3461 3697 377812656 377812417 3.390000e-56 230.0
26 TraesCS6A01G107500 chr4B 83.951 243 30 9 3461 3697 377845054 377844815 1.580000e-54 224.0
27 TraesCS6A01G107500 chr4B 71.761 602 150 19 29 619 672265299 672265891 7.560000e-33 152.0
28 TraesCS6A01G107500 chr7B 83.468 248 34 7 3455 3697 461172717 461172962 1.580000e-54 224.0
29 TraesCS6A01G107500 chr7B 83.902 205 31 2 1358 1561 748033340 748033543 1.240000e-45 195.0
30 TraesCS6A01G107500 chr1B 83.333 246 33 8 3457 3697 335915752 335915994 2.040000e-53 220.0
31 TraesCS6A01G107500 chr1B 71.820 511 133 10 116 619 489150444 489149938 7.610000e-28 135.0
32 TraesCS6A01G107500 chr1D 72.575 536 131 14 95 621 436632419 436631891 1.260000e-35 161.0
33 TraesCS6A01G107500 chr7D 72.439 537 130 16 95 621 577018849 577018321 5.840000e-34 156.0
34 TraesCS6A01G107500 chr5B 75.704 284 65 3 95 376 551296256 551295975 5.880000e-29 139.0
35 TraesCS6A01G107500 chr3D 72.872 376 101 1 1 376 527073052 527072678 1.270000e-25 128.0
36 TraesCS6A01G107500 chr5D 86.441 59 3 2 3888 3946 490018941 490018888 4.710000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G107500 chr6A 76091115 76095476 4361 False 8056.00 8056 100.000000 1 4362 1 chr6A.!!$F1 4361
1 TraesCS6A01G107500 chr6A 76044044 76045028 984 True 587.00 893 85.889000 2732 4064 2 chr6A.!!$R1 1332
2 TraesCS6A01G107500 chr6A 76086726 76090974 4248 True 391.75 839 90.023500 1 2739 6 chr6A.!!$R2 2738
3 TraesCS6A01G107500 chr6B 133354614 133358008 3394 True 4843.00 4843 92.557000 995 4362 1 chr6B.!!$R2 3367
4 TraesCS6A01G107500 chr6B 133438700 133442838 4138 False 2627.50 4503 93.515000 671 4362 2 chr6B.!!$F1 3691
5 TraesCS6A01G107500 chr6B 133167693 133170897 3204 True 634.00 1439 88.336667 1670 3456 3 chr6B.!!$R3 1786
6 TraesCS6A01G107500 chr6B 133321994 133322521 527 True 538.00 538 85.499000 1670 2185 1 chr6B.!!$R1 515
7 TraesCS6A01G107500 chr6D 59717951 59720434 2483 True 3079.00 3079 89.289000 999 3456 1 chr6D.!!$R1 2457
8 TraesCS6A01G107500 chr6D 59732667 59736601 3934 False 1195.25 3297 91.942250 1 4072 4 chr6D.!!$F2 4071
9 TraesCS6A01G107500 chr3B 470029582 470031960 2378 False 1760.00 1760 80.430000 998 3362 1 chr3B.!!$F1 2364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 560 0.037046 GCAACCCATTTTCCTGCCAG 60.037 55.0 0.0 0.0 0.00 4.85 F
462 826 0.317854 GGTGGCTGTGCGAGAAAAAC 60.318 55.0 0.0 0.0 0.00 2.43 F
1059 1858 0.109723 TAGCCACGCTTGTTTCCCTT 59.890 50.0 0.0 0.0 40.44 3.95 F
1550 2373 0.033504 GTCAACCAGCAAGAGGACGA 59.966 55.0 0.0 0.0 0.00 4.20 F
3062 5745 0.032815 TGTCACGGCGAAGATTGACA 59.967 50.0 21.5 21.5 44.68 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1858 0.029967 TTTGCGCGCATGAAAAGTCA 59.970 45.0 36.83 14.18 38.41 3.41 R
1532 2355 0.033504 GTCGTCCTCTTGCTGGTTGA 59.966 55.0 0.00 0.00 0.00 3.18 R
2067 4697 0.247814 CCGCGTCGTACGTTATGTCT 60.248 55.0 16.05 0.00 44.73 3.41 R
3278 7662 0.824109 TTGATGGACGGCCTAGACTG 59.176 55.0 9.82 0.00 34.31 3.51 R
4084 9259 0.873312 CTCGAGCATGGATGTCGTGG 60.873 60.0 0.00 4.01 34.92 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 439 5.763204 TGACTTGGTTCACATTCTTAGGTTC 59.237 40.000 0.00 0.00 0.00 3.62
105 469 7.616935 AGAATTTGCCAAGATGAGGATTCTTTA 59.383 33.333 0.00 0.00 30.74 1.85
196 560 0.037046 GCAACCCATTTTCCTGCCAG 60.037 55.000 0.00 0.00 0.00 4.85
221 585 4.019591 AGTCTGGAACATTAAGGTACCACC 60.020 45.833 15.94 4.81 38.20 4.61
225 589 6.070424 TCTGGAACATTAAGGTACCACCTAAG 60.070 42.308 15.94 1.66 44.12 2.18
237 601 4.034285 ACCACCTAAGATTCAAGGGTTG 57.966 45.455 9.23 2.28 37.18 3.77
341 705 2.010145 TGCACTGAGATAGAAACGGC 57.990 50.000 0.00 0.00 0.00 5.68
434 798 5.705441 TGTCCATCACTAATTTCAAGTCACC 59.295 40.000 0.00 0.00 0.00 4.02
438 802 2.073816 ACTAATTTCAAGTCACCGGCG 58.926 47.619 0.00 0.00 0.00 6.46
440 804 1.156736 AATTTCAAGTCACCGGCGAG 58.843 50.000 9.30 0.06 0.00 5.03
462 826 0.317854 GGTGGCTGTGCGAGAAAAAC 60.318 55.000 0.00 0.00 0.00 2.43
463 827 0.380378 GTGGCTGTGCGAGAAAAACA 59.620 50.000 0.00 0.00 0.00 2.83
464 828 0.380378 TGGCTGTGCGAGAAAAACAC 59.620 50.000 0.00 0.00 34.86 3.32
498 863 2.097036 TGATCACATCTACGGTTCCGT 58.903 47.619 20.39 20.39 45.12 4.69
503 868 2.062177 ATCTACGGTTCCGTGGGGG 61.062 63.158 24.37 12.67 42.91 5.40
589 955 5.600669 TTGGCCTAGTCCTGAGATATCTA 57.399 43.478 4.89 0.00 0.00 1.98
605 971 8.772250 TGAGATATCTAAAGGACTGGACAAAAT 58.228 33.333 4.89 0.00 0.00 1.82
611 977 7.287061 TCTAAAGGACTGGACAAAATCTTTCA 58.713 34.615 0.00 0.00 0.00 2.69
621 987 5.051891 ACAAAATCTTTCAAGGATCTGCG 57.948 39.130 0.00 0.00 0.00 5.18
626 992 0.740868 TTTCAAGGATCTGCGAGGCG 60.741 55.000 0.00 0.00 0.00 5.52
668 1034 1.463553 AAAACCCTTTGGAGCTGGCG 61.464 55.000 0.00 0.00 34.81 5.69
714 1080 1.616159 AGCCGGCGCCATTATTTTAT 58.384 45.000 28.98 0.00 34.57 1.40
749 1115 1.738099 CGGGCACAGAAGAAGTCCG 60.738 63.158 0.00 0.00 0.00 4.79
764 1130 5.938279 AGAAGTCCGTAGTATCACTATCCA 58.062 41.667 0.00 0.00 32.65 3.41
769 1135 5.180868 GTCCGTAGTATCACTATCCAATCGT 59.819 44.000 0.00 0.00 32.65 3.73
852 1472 2.747446 CGTCCGTTTTCTTCCATGGAAT 59.253 45.455 27.20 0.00 33.28 3.01
884 1504 3.479505 CGAATATTTCGCCCAACAACA 57.520 42.857 0.00 0.00 46.97 3.33
885 1505 3.827625 CGAATATTTCGCCCAACAACAA 58.172 40.909 0.00 0.00 46.97 2.83
932 1552 2.746279 TGACCTGTTGAATGGTTGGT 57.254 45.000 0.00 0.00 36.59 3.67
972 1592 1.922570 ACGTGCAATCATCGTACTCC 58.077 50.000 0.00 0.00 36.05 3.85
996 1616 2.473235 GCACTTAGCGAGCAAGTATAGC 59.527 50.000 10.75 8.14 34.50 2.97
1008 1659 0.689623 AGTATAGCTCCATGGCTGCC 59.310 55.000 20.85 12.87 43.01 4.85
1059 1858 0.109723 TAGCCACGCTTGTTTCCCTT 59.890 50.000 0.00 0.00 40.44 3.95
1403 2218 2.815211 GCTGTTCGGCGCTGATGA 60.815 61.111 21.71 8.66 0.00 2.92
1502 2317 0.976641 TTCTCCAGCTTGTCCGACAT 59.023 50.000 1.09 0.00 0.00 3.06
1515 2338 2.324330 CGACATCAACAAGGCCGCA 61.324 57.895 0.00 0.00 0.00 5.69
1532 2355 2.036890 AGGGAAGTACCGGCTCGT 59.963 61.111 0.00 0.00 40.11 4.18
1550 2373 0.033504 GTCAACCAGCAAGAGGACGA 59.966 55.000 0.00 0.00 0.00 4.20
1799 2628 1.283736 CGTTTGTACCGCCATACCTC 58.716 55.000 0.00 0.00 0.00 3.85
1801 2630 1.065998 GTTTGTACCGCCATACCTCCA 60.066 52.381 0.00 0.00 0.00 3.86
1816 2657 4.758251 CCATGTCTGGCGGTGCGA 62.758 66.667 0.00 0.00 35.23 5.10
1834 2675 0.322322 GACCAATACCACCACCGTCA 59.678 55.000 0.00 0.00 0.00 4.35
1836 2677 2.168936 GACCAATACCACCACCGTCATA 59.831 50.000 0.00 0.00 0.00 2.15
1848 2689 0.387878 CCGTCATATGGAGCGCTCTC 60.388 60.000 34.46 24.64 38.62 3.20
1899 2743 2.838736 CACAACAGCTACTGTGTCCTT 58.161 47.619 15.88 0.00 44.62 3.36
2036 4666 0.946221 CAAGACGCCGCAGACTTCTT 60.946 55.000 0.00 0.00 0.00 2.52
2067 4697 2.350895 CCGAACATGGAGTGGGCA 59.649 61.111 0.00 0.00 0.00 5.36
2074 4704 1.915489 ACATGGAGTGGGCAGACATAA 59.085 47.619 0.00 0.00 0.00 1.90
2082 4712 1.135315 TGGGCAGACATAACGTACGAC 60.135 52.381 24.41 5.83 0.00 4.34
2115 4745 4.742201 ACGAGCGCGCCAGAATGT 62.742 61.111 30.33 14.39 42.48 2.71
2116 4746 4.214383 CGAGCGCGCCAGAATGTG 62.214 66.667 30.33 4.71 0.00 3.21
2429 5086 4.389576 GGCACCTGCAAACGCGAG 62.390 66.667 15.93 2.87 44.36 5.03
2496 5174 3.968649 TGAGGTTGTACACTTACCAGGAA 59.031 43.478 15.84 0.00 34.32 3.36
2632 5310 1.227089 CTCGTGGAGGATGGCGAAG 60.227 63.158 0.00 0.00 32.84 3.79
2633 5311 1.667154 CTCGTGGAGGATGGCGAAGA 61.667 60.000 0.00 0.00 32.84 2.87
2862 5540 2.101415 CCTGCACTATCTCCATGACGAA 59.899 50.000 0.00 0.00 0.00 3.85
2885 5563 2.494445 CAGCCGCGTGATCCACTA 59.506 61.111 4.92 0.00 31.34 2.74
3062 5745 0.032815 TGTCACGGCGAAGATTGACA 59.967 50.000 21.50 21.50 44.68 3.58
3073 5756 4.747108 GCGAAGATTGACATGTACAGCTAT 59.253 41.667 0.00 0.00 0.00 2.97
3088 5771 2.436469 TATGGCGTGGTGCTGCTG 60.436 61.111 0.00 0.00 45.43 4.41
3393 8151 5.046159 TGAACTTTTATATCACCCAGGTCGT 60.046 40.000 0.00 0.00 0.00 4.34
3398 8156 1.324740 TATCACCCAGGTCGTTCGGG 61.325 60.000 0.00 0.00 46.22 5.14
3409 8167 2.550978 GTCGTTCGGGACATGATGAAT 58.449 47.619 0.00 0.00 36.91 2.57
3410 8168 2.936498 GTCGTTCGGGACATGATGAATT 59.064 45.455 0.00 0.00 36.91 2.17
3427 8185 6.427853 TGATGAATTACTCGGCTATCAAATGG 59.572 38.462 0.00 0.00 0.00 3.16
3429 8187 6.353323 TGAATTACTCGGCTATCAAATGGAA 58.647 36.000 0.00 0.00 0.00 3.53
3453 8211 2.413634 GCCGTTAAAATTGGTGGAGTCG 60.414 50.000 0.00 0.00 0.00 4.18
3456 8214 4.460505 CGTTAAAATTGGTGGAGTCGAAC 58.539 43.478 0.00 0.00 0.00 3.95
3458 8216 3.982576 AAAATTGGTGGAGTCGAACAC 57.017 42.857 0.00 7.42 36.89 3.32
3460 8218 2.859165 ATTGGTGGAGTCGAACACAT 57.141 45.000 15.29 2.25 39.31 3.21
3462 8220 2.631160 TGGTGGAGTCGAACACATTT 57.369 45.000 15.29 0.00 39.31 2.32
3463 8221 2.217750 TGGTGGAGTCGAACACATTTG 58.782 47.619 15.29 0.00 39.31 2.32
3464 8222 2.218603 GGTGGAGTCGAACACATTTGT 58.781 47.619 15.29 0.00 39.31 2.83
3465 8223 2.223377 GGTGGAGTCGAACACATTTGTC 59.777 50.000 15.29 0.00 39.31 3.18
3466 8224 2.869801 GTGGAGTCGAACACATTTGTCA 59.130 45.455 10.27 0.00 37.54 3.58
3467 8225 3.498397 GTGGAGTCGAACACATTTGTCAT 59.502 43.478 10.27 0.00 37.54 3.06
3468 8226 3.498018 TGGAGTCGAACACATTTGTCATG 59.502 43.478 0.00 0.00 33.55 3.07
3469 8227 3.745975 GGAGTCGAACACATTTGTCATGA 59.254 43.478 0.00 0.00 33.55 3.07
3470 8228 4.213270 GGAGTCGAACACATTTGTCATGAA 59.787 41.667 0.00 0.00 33.55 2.57
3471 8229 5.106555 GGAGTCGAACACATTTGTCATGAAT 60.107 40.000 0.00 0.00 33.55 2.57
3472 8230 5.692814 AGTCGAACACATTTGTCATGAATG 58.307 37.500 0.00 0.00 39.73 2.67
3473 8231 4.321745 GTCGAACACATTTGTCATGAATGC 59.678 41.667 0.00 0.00 37.89 3.56
3474 8232 4.023365 TCGAACACATTTGTCATGAATGCA 60.023 37.500 0.00 0.00 37.89 3.96
3475 8233 4.680567 CGAACACATTTGTCATGAATGCAA 59.319 37.500 0.00 0.00 37.89 4.08
3476 8234 5.175308 CGAACACATTTGTCATGAATGCAAA 59.825 36.000 11.15 11.15 37.89 3.68
3477 8235 6.128769 CGAACACATTTGTCATGAATGCAAAT 60.129 34.615 14.02 14.02 41.05 2.32
3496 8254 7.933728 GCAAATGACATGCACATATAAATGA 57.066 32.000 6.44 0.00 43.29 2.57
3497 8255 8.528917 GCAAATGACATGCACATATAAATGAT 57.471 30.769 6.44 0.00 43.29 2.45
3498 8256 8.432359 GCAAATGACATGCACATATAAATGATG 58.568 33.333 6.44 0.00 43.29 3.07
3499 8257 9.471084 CAAATGACATGCACATATAAATGATGT 57.529 29.630 6.44 0.00 38.05 3.06
3503 8261 9.872721 TGACATGCACATATAAATGATGTTTTT 57.127 25.926 0.00 0.00 35.31 1.94
3578 8336 9.872757 TGTTATGAAGTTTTCAAAGTAACGATC 57.127 29.630 0.00 0.00 43.95 3.69
3579 8337 9.872757 GTTATGAAGTTTTCAAAGTAACGATCA 57.127 29.630 0.00 0.00 43.95 2.92
3582 8340 9.965824 ATGAAGTTTTCAAAGTAACGATCAAAT 57.034 25.926 0.00 0.00 43.95 2.32
3583 8341 9.232082 TGAAGTTTTCAAAGTAACGATCAAATG 57.768 29.630 0.00 0.00 36.59 2.32
3584 8342 8.574196 AAGTTTTCAAAGTAACGATCAAATGG 57.426 30.769 0.00 0.00 0.00 3.16
3585 8343 7.712797 AGTTTTCAAAGTAACGATCAAATGGT 58.287 30.769 0.00 0.00 0.00 3.55
3586 8344 7.860872 AGTTTTCAAAGTAACGATCAAATGGTC 59.139 33.333 0.00 0.00 0.00 4.02
3587 8345 6.869315 TTCAAAGTAACGATCAAATGGTCA 57.131 33.333 0.00 0.00 0.00 4.02
3588 8346 6.869315 TCAAAGTAACGATCAAATGGTCAA 57.131 33.333 0.00 0.00 0.00 3.18
3589 8347 7.265647 TCAAAGTAACGATCAAATGGTCAAA 57.734 32.000 0.00 0.00 0.00 2.69
3590 8348 7.359595 TCAAAGTAACGATCAAATGGTCAAAG 58.640 34.615 0.00 0.00 0.00 2.77
3591 8349 5.880054 AGTAACGATCAAATGGTCAAAGG 57.120 39.130 0.00 0.00 0.00 3.11
3592 8350 4.700213 AGTAACGATCAAATGGTCAAAGGG 59.300 41.667 0.00 0.00 0.00 3.95
3593 8351 1.818674 ACGATCAAATGGTCAAAGGGC 59.181 47.619 0.00 0.00 0.00 5.19
3594 8352 1.818060 CGATCAAATGGTCAAAGGGCA 59.182 47.619 0.00 0.00 0.00 5.36
3595 8353 2.230992 CGATCAAATGGTCAAAGGGCAA 59.769 45.455 0.00 0.00 0.00 4.52
3596 8354 3.305950 CGATCAAATGGTCAAAGGGCAAA 60.306 43.478 0.00 0.00 0.00 3.68
3597 8355 4.640364 GATCAAATGGTCAAAGGGCAAAA 58.360 39.130 0.00 0.00 0.00 2.44
3598 8356 4.070630 TCAAATGGTCAAAGGGCAAAAG 57.929 40.909 0.00 0.00 0.00 2.27
3599 8357 3.454082 TCAAATGGTCAAAGGGCAAAAGT 59.546 39.130 0.00 0.00 0.00 2.66
3600 8358 4.651503 TCAAATGGTCAAAGGGCAAAAGTA 59.348 37.500 0.00 0.00 0.00 2.24
3601 8359 5.306678 TCAAATGGTCAAAGGGCAAAAGTAT 59.693 36.000 0.00 0.00 0.00 2.12
3602 8360 6.495181 TCAAATGGTCAAAGGGCAAAAGTATA 59.505 34.615 0.00 0.00 0.00 1.47
3603 8361 6.926630 AATGGTCAAAGGGCAAAAGTATAA 57.073 33.333 0.00 0.00 0.00 0.98
3604 8362 5.975693 TGGTCAAAGGGCAAAAGTATAAG 57.024 39.130 0.00 0.00 0.00 1.73
3605 8363 5.636123 TGGTCAAAGGGCAAAAGTATAAGA 58.364 37.500 0.00 0.00 0.00 2.10
3606 8364 5.710099 TGGTCAAAGGGCAAAAGTATAAGAG 59.290 40.000 0.00 0.00 0.00 2.85
3607 8365 5.125578 GGTCAAAGGGCAAAAGTATAAGAGG 59.874 44.000 0.00 0.00 0.00 3.69
3608 8366 5.944007 GTCAAAGGGCAAAAGTATAAGAGGA 59.056 40.000 0.00 0.00 0.00 3.71
3609 8367 6.094186 GTCAAAGGGCAAAAGTATAAGAGGAG 59.906 42.308 0.00 0.00 0.00 3.69
3610 8368 4.157849 AGGGCAAAAGTATAAGAGGAGC 57.842 45.455 0.00 0.00 0.00 4.70
3611 8369 3.523564 AGGGCAAAAGTATAAGAGGAGCA 59.476 43.478 0.00 0.00 0.00 4.26
3612 8370 4.018415 AGGGCAAAAGTATAAGAGGAGCAA 60.018 41.667 0.00 0.00 0.00 3.91
3613 8371 4.705023 GGGCAAAAGTATAAGAGGAGCAAA 59.295 41.667 0.00 0.00 0.00 3.68
3614 8372 5.393135 GGGCAAAAGTATAAGAGGAGCAAAC 60.393 44.000 0.00 0.00 0.00 2.93
3615 8373 5.183140 GGCAAAAGTATAAGAGGAGCAAACA 59.817 40.000 0.00 0.00 0.00 2.83
3616 8374 6.086871 GCAAAAGTATAAGAGGAGCAAACAC 58.913 40.000 0.00 0.00 0.00 3.32
3617 8375 6.293955 GCAAAAGTATAAGAGGAGCAAACACA 60.294 38.462 0.00 0.00 0.00 3.72
3618 8376 6.803154 AAAGTATAAGAGGAGCAAACACAC 57.197 37.500 0.00 0.00 0.00 3.82
3619 8377 5.746990 AGTATAAGAGGAGCAAACACACT 57.253 39.130 0.00 0.00 0.00 3.55
3620 8378 5.725362 AGTATAAGAGGAGCAAACACACTC 58.275 41.667 0.00 0.00 0.00 3.51
3621 8379 1.871080 AAGAGGAGCAAACACACTCG 58.129 50.000 0.00 0.00 33.55 4.18
3622 8380 0.034059 AGAGGAGCAAACACACTCGG 59.966 55.000 0.00 0.00 33.55 4.63
3623 8381 0.951040 GAGGAGCAAACACACTCGGG 60.951 60.000 0.00 0.00 33.55 5.14
3624 8382 2.617274 GGAGCAAACACACTCGGGC 61.617 63.158 0.00 0.00 33.55 6.13
3625 8383 1.891919 GAGCAAACACACTCGGGCA 60.892 57.895 0.00 0.00 0.00 5.36
3626 8384 1.444119 GAGCAAACACACTCGGGCAA 61.444 55.000 0.00 0.00 0.00 4.52
3627 8385 1.034838 AGCAAACACACTCGGGCAAA 61.035 50.000 0.00 0.00 0.00 3.68
3628 8386 0.179124 GCAAACACACTCGGGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
3629 8387 1.555477 CAAACACACTCGGGCAAAAC 58.445 50.000 0.00 0.00 0.00 2.43
3630 8388 1.134175 CAAACACACTCGGGCAAAACT 59.866 47.619 0.00 0.00 0.00 2.66
3631 8389 0.738389 AACACACTCGGGCAAAACTG 59.262 50.000 0.00 0.00 0.00 3.16
3632 8390 0.107410 ACACACTCGGGCAAAACTGA 60.107 50.000 0.00 0.00 0.00 3.41
3633 8391 1.238439 CACACTCGGGCAAAACTGAT 58.762 50.000 0.00 0.00 0.00 2.90
3634 8392 1.608590 CACACTCGGGCAAAACTGATT 59.391 47.619 0.00 0.00 0.00 2.57
3635 8393 2.034558 CACACTCGGGCAAAACTGATTT 59.965 45.455 0.00 0.00 0.00 2.17
3636 8394 2.693074 ACACTCGGGCAAAACTGATTTT 59.307 40.909 0.00 0.00 38.61 1.82
3637 8395 3.132111 ACACTCGGGCAAAACTGATTTTT 59.868 39.130 0.00 0.00 35.79 1.94
3660 8418 7.575332 TTTTTAACTAGCGGCAAATCAAATC 57.425 32.000 1.45 0.00 0.00 2.17
3661 8419 3.405170 AACTAGCGGCAAATCAAATCG 57.595 42.857 1.45 0.00 0.00 3.34
3662 8420 2.627945 ACTAGCGGCAAATCAAATCGA 58.372 42.857 1.45 0.00 0.00 3.59
3663 8421 3.206150 ACTAGCGGCAAATCAAATCGAT 58.794 40.909 1.45 0.00 35.12 3.59
3664 8422 2.480224 AGCGGCAAATCAAATCGATG 57.520 45.000 0.00 0.00 33.40 3.84
3665 8423 1.066002 AGCGGCAAATCAAATCGATGG 59.934 47.619 0.00 0.00 33.40 3.51
3666 8424 1.865248 GCGGCAAATCAAATCGATGGG 60.865 52.381 0.00 0.00 33.40 4.00
3667 8425 1.675483 CGGCAAATCAAATCGATGGGA 59.325 47.619 0.00 0.00 33.40 4.37
3668 8426 2.294233 CGGCAAATCAAATCGATGGGAT 59.706 45.455 0.00 2.18 36.78 3.85
3669 8427 3.501828 CGGCAAATCAAATCGATGGGATA 59.498 43.478 11.24 0.00 34.08 2.59
3670 8428 4.613622 CGGCAAATCAAATCGATGGGATAC 60.614 45.833 11.24 5.87 34.08 2.24
3671 8429 4.278170 GGCAAATCAAATCGATGGGATACA 59.722 41.667 11.24 0.00 34.08 2.29
3672 8430 5.221224 GGCAAATCAAATCGATGGGATACAA 60.221 40.000 11.24 0.00 34.08 2.41
3673 8431 5.916883 GCAAATCAAATCGATGGGATACAAG 59.083 40.000 11.24 5.04 34.08 3.16
3674 8432 6.460123 GCAAATCAAATCGATGGGATACAAGT 60.460 38.462 11.24 0.00 34.08 3.16
3675 8433 7.255104 GCAAATCAAATCGATGGGATACAAGTA 60.255 37.037 11.24 0.00 34.08 2.24
3676 8434 7.969536 AATCAAATCGATGGGATACAAGTAG 57.030 36.000 11.24 0.00 34.08 2.57
3677 8435 5.853936 TCAAATCGATGGGATACAAGTAGG 58.146 41.667 0.00 0.00 34.08 3.18
3678 8436 4.891992 AATCGATGGGATACAAGTAGGG 57.108 45.455 0.00 0.00 34.08 3.53
3679 8437 2.605257 TCGATGGGATACAAGTAGGGG 58.395 52.381 0.00 0.00 39.74 4.79
3680 8438 1.002087 CGATGGGATACAAGTAGGGGC 59.998 57.143 0.00 0.00 39.74 5.80
3681 8439 2.054799 GATGGGATACAAGTAGGGGCA 58.945 52.381 0.00 0.00 39.74 5.36
3682 8440 2.206322 TGGGATACAAGTAGGGGCAT 57.794 50.000 0.00 0.00 39.74 4.40
3683 8441 3.354233 TGGGATACAAGTAGGGGCATA 57.646 47.619 0.00 0.00 39.74 3.14
3684 8442 3.671079 TGGGATACAAGTAGGGGCATAA 58.329 45.455 0.00 0.00 39.74 1.90
3685 8443 4.048600 TGGGATACAAGTAGGGGCATAAA 58.951 43.478 0.00 0.00 39.74 1.40
3686 8444 4.479056 TGGGATACAAGTAGGGGCATAAAA 59.521 41.667 0.00 0.00 39.74 1.52
3687 8445 5.135362 TGGGATACAAGTAGGGGCATAAAAT 59.865 40.000 0.00 0.00 39.74 1.82
3688 8446 6.075315 GGGATACAAGTAGGGGCATAAAATT 58.925 40.000 0.00 0.00 39.74 1.82
3689 8447 7.147105 TGGGATACAAGTAGGGGCATAAAATTA 60.147 37.037 0.00 0.00 39.74 1.40
3690 8448 7.726738 GGGATACAAGTAGGGGCATAAAATTAA 59.273 37.037 0.00 0.00 39.74 1.40
3691 8449 9.309224 GGATACAAGTAGGGGCATAAAATTAAT 57.691 33.333 0.00 0.00 0.00 1.40
3697 8455 9.890915 AAGTAGGGGCATAAAATTAATTATCCA 57.109 29.630 0.01 0.00 0.00 3.41
3698 8456 9.890915 AGTAGGGGCATAAAATTAATTATCCAA 57.109 29.630 0.01 0.00 0.00 3.53
3700 8458 7.679783 AGGGGCATAAAATTAATTATCCAAGC 58.320 34.615 0.01 2.04 0.00 4.01
3701 8459 6.878923 GGGGCATAAAATTAATTATCCAAGCC 59.121 38.462 15.36 15.36 33.28 4.35
3702 8460 7.449247 GGGCATAAAATTAATTATCCAAGCCA 58.551 34.615 20.86 0.00 34.61 4.75
3703 8461 8.102676 GGGCATAAAATTAATTATCCAAGCCAT 58.897 33.333 20.86 0.00 34.61 4.40
3704 8462 9.154847 GGCATAAAATTAATTATCCAAGCCATC 57.845 33.333 17.32 0.31 33.80 3.51
3705 8463 9.709495 GCATAAAATTAATTATCCAAGCCATCA 57.291 29.630 0.01 0.00 0.00 3.07
3708 8466 5.964958 ATTAATTATCCAAGCCATCACCG 57.035 39.130 0.00 0.00 0.00 4.94
3709 8467 1.609208 ATTATCCAAGCCATCACCGC 58.391 50.000 0.00 0.00 0.00 5.68
3710 8468 0.465460 TTATCCAAGCCATCACCGCC 60.465 55.000 0.00 0.00 0.00 6.13
3711 8469 2.658679 TATCCAAGCCATCACCGCCG 62.659 60.000 0.00 0.00 0.00 6.46
3738 8496 3.971894 CCCCCGCTTCCTAGTGAT 58.028 61.111 0.00 0.00 33.62 3.06
3739 8497 1.447643 CCCCCGCTTCCTAGTGATG 59.552 63.158 0.00 0.00 33.62 3.07
3740 8498 1.048724 CCCCCGCTTCCTAGTGATGA 61.049 60.000 0.00 0.00 33.62 2.92
3741 8499 0.830648 CCCCGCTTCCTAGTGATGAA 59.169 55.000 0.00 0.00 33.62 2.57
3742 8500 1.473434 CCCCGCTTCCTAGTGATGAAC 60.473 57.143 0.00 0.00 33.62 3.18
3743 8501 1.482593 CCCGCTTCCTAGTGATGAACT 59.517 52.381 0.00 0.00 43.40 3.01
3744 8502 2.093447 CCCGCTTCCTAGTGATGAACTT 60.093 50.000 0.00 0.00 40.56 2.66
3745 8503 3.600388 CCGCTTCCTAGTGATGAACTTT 58.400 45.455 0.00 0.00 40.56 2.66
3746 8504 3.619038 CCGCTTCCTAGTGATGAACTTTC 59.381 47.826 0.00 0.00 40.56 2.62
3747 8505 4.245660 CGCTTCCTAGTGATGAACTTTCA 58.754 43.478 0.00 0.00 40.56 2.69
3761 8519 6.908870 TGAACTTTCATATCATCCAAGTCG 57.091 37.500 0.00 0.00 31.01 4.18
3762 8520 5.294306 TGAACTTTCATATCATCCAAGTCGC 59.706 40.000 0.00 0.00 31.01 5.19
3763 8521 5.028549 ACTTTCATATCATCCAAGTCGCT 57.971 39.130 0.00 0.00 0.00 4.93
3764 8522 5.053145 ACTTTCATATCATCCAAGTCGCTC 58.947 41.667 0.00 0.00 0.00 5.03
3765 8523 3.288809 TCATATCATCCAAGTCGCTCG 57.711 47.619 0.00 0.00 0.00 5.03
3766 8524 2.029918 TCATATCATCCAAGTCGCTCGG 60.030 50.000 0.00 0.00 0.00 4.63
3767 8525 1.687563 TATCATCCAAGTCGCTCGGA 58.312 50.000 0.00 0.00 0.00 4.55
3768 8526 0.824109 ATCATCCAAGTCGCTCGGAA 59.176 50.000 0.00 0.00 31.18 4.30
3769 8527 0.108804 TCATCCAAGTCGCTCGGAAC 60.109 55.000 0.00 0.00 31.18 3.62
3770 8528 0.389817 CATCCAAGTCGCTCGGAACA 60.390 55.000 0.00 0.00 31.18 3.18
3771 8529 0.537188 ATCCAAGTCGCTCGGAACAT 59.463 50.000 0.00 0.00 31.18 2.71
3772 8530 0.108804 TCCAAGTCGCTCGGAACATC 60.109 55.000 0.00 0.00 0.00 3.06
3773 8531 0.389817 CCAAGTCGCTCGGAACATCA 60.390 55.000 0.00 0.00 0.00 3.07
3774 8532 1.645034 CAAGTCGCTCGGAACATCAT 58.355 50.000 0.00 0.00 0.00 2.45
3775 8533 1.325640 CAAGTCGCTCGGAACATCATG 59.674 52.381 0.00 0.00 0.00 3.07
3776 8534 0.817654 AGTCGCTCGGAACATCATGA 59.182 50.000 0.00 0.00 0.00 3.07
3777 8535 1.204704 AGTCGCTCGGAACATCATGAA 59.795 47.619 0.00 0.00 0.00 2.57
3778 8536 1.324736 GTCGCTCGGAACATCATGAAC 59.675 52.381 0.00 0.00 0.00 3.18
3779 8537 1.067213 TCGCTCGGAACATCATGAACA 60.067 47.619 0.00 0.00 0.00 3.18
3780 8538 1.731709 CGCTCGGAACATCATGAACAA 59.268 47.619 0.00 0.00 0.00 2.83
3781 8539 2.474526 CGCTCGGAACATCATGAACAAC 60.475 50.000 0.00 0.00 0.00 3.32
3782 8540 2.744202 GCTCGGAACATCATGAACAACT 59.256 45.455 0.00 0.00 0.00 3.16
3783 8541 3.189287 GCTCGGAACATCATGAACAACTT 59.811 43.478 0.00 0.00 0.00 2.66
3784 8542 4.715896 CTCGGAACATCATGAACAACTTG 58.284 43.478 0.00 0.00 0.00 3.16
3785 8543 3.501828 TCGGAACATCATGAACAACTTGG 59.498 43.478 0.00 0.00 0.00 3.61
3786 8544 3.578688 GGAACATCATGAACAACTTGGC 58.421 45.455 0.00 0.00 0.00 4.52
3787 8545 3.256631 GGAACATCATGAACAACTTGGCT 59.743 43.478 0.00 0.00 0.00 4.75
3788 8546 4.458989 GGAACATCATGAACAACTTGGCTA 59.541 41.667 0.00 0.00 0.00 3.93
3789 8547 5.126061 GGAACATCATGAACAACTTGGCTAT 59.874 40.000 0.00 0.00 0.00 2.97
3790 8548 5.824904 ACATCATGAACAACTTGGCTATC 57.175 39.130 0.00 0.00 0.00 2.08
3791 8549 5.255687 ACATCATGAACAACTTGGCTATCA 58.744 37.500 0.00 0.00 0.00 2.15
3792 8550 5.711506 ACATCATGAACAACTTGGCTATCAA 59.288 36.000 0.00 0.00 0.00 2.57
3793 8551 6.209192 ACATCATGAACAACTTGGCTATCAAA 59.791 34.615 0.00 0.00 34.56 2.69
3794 8552 6.839124 TCATGAACAACTTGGCTATCAAAT 57.161 33.333 0.00 0.00 34.56 2.32
3795 8553 7.936496 TCATGAACAACTTGGCTATCAAATA 57.064 32.000 0.00 0.00 34.56 1.40
3796 8554 8.523915 TCATGAACAACTTGGCTATCAAATAT 57.476 30.769 0.00 0.00 34.56 1.28
3797 8555 9.625747 TCATGAACAACTTGGCTATCAAATATA 57.374 29.630 0.00 0.00 34.56 0.86
3798 8556 9.888878 CATGAACAACTTGGCTATCAAATATAG 57.111 33.333 0.00 0.00 34.56 1.31
3799 8557 9.851686 ATGAACAACTTGGCTATCAAATATAGA 57.148 29.630 0.00 0.00 34.56 1.98
3800 8558 9.851686 TGAACAACTTGGCTATCAAATATAGAT 57.148 29.630 0.00 0.00 34.56 1.98
3802 8560 8.103948 ACAACTTGGCTATCAAATATAGATGC 57.896 34.615 0.00 3.69 34.56 3.91
3803 8561 7.175641 ACAACTTGGCTATCAAATATAGATGCC 59.824 37.037 16.19 16.19 38.75 4.40
3804 8562 5.877012 ACTTGGCTATCAAATATAGATGCCG 59.123 40.000 17.01 11.34 39.94 5.69
3805 8563 5.420725 TGGCTATCAAATATAGATGCCGT 57.579 39.130 17.01 0.00 39.94 5.68
3806 8564 5.804639 TGGCTATCAAATATAGATGCCGTT 58.195 37.500 17.01 0.00 39.94 4.44
3807 8565 6.941857 TGGCTATCAAATATAGATGCCGTTA 58.058 36.000 17.01 6.55 39.94 3.18
3808 8566 7.390823 TGGCTATCAAATATAGATGCCGTTAA 58.609 34.615 17.01 6.35 39.94 2.01
3809 8567 7.880713 TGGCTATCAAATATAGATGCCGTTAAA 59.119 33.333 17.01 6.14 39.94 1.52
3810 8568 8.726988 GGCTATCAAATATAGATGCCGTTAAAA 58.273 33.333 11.82 0.00 33.40 1.52
3814 8572 9.912634 ATCAAATATAGATGCCGTTAAAATTGG 57.087 29.630 0.00 0.00 0.00 3.16
3815 8573 8.908903 TCAAATATAGATGCCGTTAAAATTGGT 58.091 29.630 0.00 0.00 0.00 3.67
3816 8574 8.967218 CAAATATAGATGCCGTTAAAATTGGTG 58.033 33.333 0.00 0.00 0.00 4.17
3817 8575 3.866883 AGATGCCGTTAAAATTGGTGG 57.133 42.857 0.00 0.00 0.00 4.61
3818 8576 3.426615 AGATGCCGTTAAAATTGGTGGA 58.573 40.909 0.00 0.00 0.00 4.02
3819 8577 3.829601 AGATGCCGTTAAAATTGGTGGAA 59.170 39.130 0.00 0.00 0.00 3.53
3838 8599 6.183360 GGTGGAAGGTACAAAATACAAACACA 60.183 38.462 0.00 0.00 0.00 3.72
3947 9117 2.825532 TCAAAAAGCATGTAGGAAGGCC 59.174 45.455 0.00 0.00 0.00 5.19
3948 9118 1.463674 AAAAGCATGTAGGAAGGCCG 58.536 50.000 0.00 0.00 39.96 6.13
4043 9216 6.168389 GCATTGACCATCCAAAATTCTCTTT 58.832 36.000 0.00 0.00 0.00 2.52
4181 9356 3.944123 CCCAGCATCAACCATGGG 58.056 61.111 18.09 0.00 46.14 4.00
4262 9438 1.539712 CGAAACTATAACTCGGGGCCC 60.540 57.143 15.76 15.76 0.00 5.80
4267 9443 1.271656 CTATAACTCGGGGCCCTTACG 59.728 57.143 24.38 17.70 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 439 5.188434 TCCTCATCTTGGCAAATTCTAGTG 58.812 41.667 0.00 0.00 0.00 2.74
105 469 7.037658 ACCCCTTTAGTTTCATATTGCCAAATT 60.038 33.333 0.00 0.00 0.00 1.82
196 560 3.939592 GGTACCTTAATGTTCCAGACTGC 59.060 47.826 4.06 0.00 0.00 4.40
221 585 4.619160 GCCAAAGCAACCCTTGAATCTTAG 60.619 45.833 0.00 0.00 39.53 2.18
225 589 1.620323 AGCCAAAGCAACCCTTGAATC 59.380 47.619 0.00 0.00 43.56 2.52
237 601 6.701400 TCTTGTTTTGAGAAAATAGCCAAAGC 59.299 34.615 0.00 0.00 33.95 3.51
289 653 1.920835 GGGGTTCTGGCAGTCCTCT 60.921 63.158 22.63 0.00 0.00 3.69
362 726 4.122776 CCACATCAATCTAGCCACTACAC 58.877 47.826 0.00 0.00 0.00 2.90
364 728 4.672587 TCCACATCAATCTAGCCACTAC 57.327 45.455 0.00 0.00 0.00 2.73
374 738 3.861840 TCGACCTCTTTCCACATCAATC 58.138 45.455 0.00 0.00 0.00 2.67
427 791 2.283529 ACCATCTCGCCGGTGACTT 61.284 57.895 15.21 0.75 33.05 3.01
434 798 4.457496 ACAGCCACCATCTCGCCG 62.457 66.667 0.00 0.00 0.00 6.46
438 802 1.812922 CTCGCACAGCCACCATCTC 60.813 63.158 0.00 0.00 0.00 2.75
440 804 0.955428 TTTCTCGCACAGCCACCATC 60.955 55.000 0.00 0.00 0.00 3.51
462 826 5.761003 TGTGATCACATTTAACTGCAAGTG 58.239 37.500 24.56 0.00 41.30 3.16
498 863 2.204865 CTACAATTCCACCGCCCCCA 62.205 60.000 0.00 0.00 0.00 4.96
503 868 2.423538 AGCATTTCTACAATTCCACCGC 59.576 45.455 0.00 0.00 0.00 5.68
505 870 7.499232 ACACTATAGCATTTCTACAATTCCACC 59.501 37.037 0.00 0.00 0.00 4.61
546 912 5.008217 CCAAACACCTGTTTCGTAGAAATCA 59.992 40.000 0.23 0.00 45.54 2.57
589 955 6.183360 CCTTGAAAGATTTTGTCCAGTCCTTT 60.183 38.462 0.00 0.00 0.00 3.11
596 962 5.047802 GCAGATCCTTGAAAGATTTTGTCCA 60.048 40.000 0.00 0.00 0.00 4.02
605 971 1.406069 GCCTCGCAGATCCTTGAAAGA 60.406 52.381 0.00 0.00 33.89 2.52
611 977 2.303549 CTTCCGCCTCGCAGATCCTT 62.304 60.000 0.00 0.00 33.89 3.36
621 987 1.885163 TTCCCTCGTTCTTCCGCCTC 61.885 60.000 0.00 0.00 0.00 4.70
626 992 3.404224 AGTTTCTTCCCTCGTTCTTCC 57.596 47.619 0.00 0.00 0.00 3.46
749 1115 6.087522 GCAGACGATTGGATAGTGATACTAC 58.912 44.000 0.00 0.00 32.84 2.73
884 1504 4.939052 TTTCTCAAGGAAGACGAGACTT 57.061 40.909 0.00 0.00 35.58 3.01
885 1505 4.099573 TGTTTTCTCAAGGAAGACGAGACT 59.900 41.667 0.00 0.00 40.57 3.24
954 1574 1.588404 GTGGAGTACGATGATTGCACG 59.412 52.381 0.00 0.00 0.00 5.34
996 1616 0.974010 AATGGTTGGCAGCCATGGAG 60.974 55.000 32.59 8.23 45.21 3.86
1008 1659 3.250744 CAAGAGCAGATGCAAATGGTTG 58.749 45.455 7.68 0.62 45.16 3.77
1059 1858 0.029967 TTTGCGCGCATGAAAAGTCA 59.970 45.000 36.83 14.18 38.41 3.41
1470 2285 4.810661 GAGAAGAGCTGCGCCGCT 62.811 66.667 26.96 26.96 44.33 5.52
1492 2307 1.234821 GCCTTGTTGATGTCGGACAA 58.765 50.000 15.72 0.00 0.00 3.18
1502 2317 3.126703 TTCCCTGCGGCCTTGTTGA 62.127 57.895 0.00 0.00 0.00 3.18
1515 2338 2.036890 ACGAGCCGGTACTTCCCT 59.963 61.111 1.90 0.00 0.00 4.20
1532 2355 0.033504 GTCGTCCTCTTGCTGGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
1573 2396 3.515316 CTGGGTCGTTCGGTGTGCT 62.515 63.158 0.00 0.00 0.00 4.40
1641 2464 2.937873 GCCACTGGTATCAAGGCGTAAA 60.938 50.000 3.57 0.00 35.43 2.01
1644 2467 1.078426 GCCACTGGTATCAAGGCGT 60.078 57.895 3.57 0.00 35.43 5.68
1801 2630 4.760047 GGTCGCACCGCCAGACAT 62.760 66.667 0.00 0.00 36.68 3.06
1816 2657 0.988832 ATGACGGTGGTGGTATTGGT 59.011 50.000 0.00 0.00 0.00 3.67
1834 2675 0.823769 TCGGTGAGAGCGCTCCATAT 60.824 55.000 32.94 15.61 40.55 1.78
1836 2677 2.081425 GATCGGTGAGAGCGCTCCAT 62.081 60.000 32.94 16.85 40.55 3.41
1848 2689 1.300156 ATGGACGCATCGATCGGTG 60.300 57.895 23.99 23.99 0.00 4.94
1899 2743 2.134287 GCTAGGCCGATCCTGGTCA 61.134 63.158 0.00 0.00 46.98 4.02
2036 4666 0.669318 GTTCGGCATGGACTTCACGA 60.669 55.000 0.00 0.00 0.00 4.35
2067 4697 0.247814 CCGCGTCGTACGTTATGTCT 60.248 55.000 16.05 0.00 44.73 3.41
2074 4704 4.748679 GCTCACCGCGTCGTACGT 62.749 66.667 16.05 0.00 44.73 3.57
2107 4737 2.048023 ATGCCGCCACACATTCTGG 61.048 57.895 0.00 0.00 0.00 3.86
2380 5037 2.281276 GGCCCTCCGTTTCACGTT 60.281 61.111 0.00 0.00 40.58 3.99
2496 5174 1.079127 GTACGTGGCATGCTCCAGT 60.079 57.895 18.92 14.54 36.67 4.00
2504 5182 1.447838 CGGAAGCAGTACGTGGCAT 60.448 57.895 0.00 0.00 0.00 4.40
2632 5310 2.099405 CACCTCTCTCTGGAACTCCTC 58.901 57.143 0.00 0.00 36.82 3.71
2633 5311 1.894978 GCACCTCTCTCTGGAACTCCT 60.895 57.143 0.00 0.00 36.82 3.69
2724 5402 2.281539 TGAACTCGTACACCAGGAGA 57.718 50.000 0.00 0.00 40.88 3.71
2850 5528 1.203287 CTGCTGAGTTCGTCATGGAGA 59.797 52.381 0.00 0.00 33.51 3.71
2862 5540 3.997064 GATCACGCGGCTGCTGAGT 62.997 63.158 17.03 12.94 39.65 3.41
2885 5563 1.089920 GTTCTGCGGCTTGATGTCAT 58.910 50.000 0.00 0.00 0.00 3.06
3062 5745 0.830648 ACCACGCCATAGCTGTACAT 59.169 50.000 0.00 0.00 36.60 2.29
3088 5771 1.517257 CCTGCACGTCACGATCTCC 60.517 63.158 2.91 0.00 0.00 3.71
3236 5923 3.146828 GCCCAACCTTCACCACCCT 62.147 63.158 0.00 0.00 0.00 4.34
3278 7662 0.824109 TTGATGGACGGCCTAGACTG 59.176 55.000 9.82 0.00 34.31 3.51
3393 8151 4.368315 CGAGTAATTCATCATGTCCCGAA 58.632 43.478 0.00 0.00 0.00 4.30
3398 8156 6.159293 TGATAGCCGAGTAATTCATCATGTC 58.841 40.000 0.00 0.00 0.00 3.06
3409 8167 5.008613 GCATTTCCATTTGATAGCCGAGTAA 59.991 40.000 0.00 0.00 0.00 2.24
3410 8168 4.515191 GCATTTCCATTTGATAGCCGAGTA 59.485 41.667 0.00 0.00 0.00 2.59
3427 8185 4.561105 TCCACCAATTTTAACGGCATTTC 58.439 39.130 0.00 0.00 0.00 2.17
3429 8187 3.576550 ACTCCACCAATTTTAACGGCATT 59.423 39.130 0.00 0.00 0.00 3.56
3453 8211 6.528014 TTTGCATTCATGACAAATGTGTTC 57.472 33.333 0.00 0.00 38.41 3.18
3456 8214 6.530567 GTCATTTGCATTCATGACAAATGTG 58.469 36.000 30.08 18.84 46.86 3.21
3463 8221 4.177783 TGCATGTCATTTGCATTCATGAC 58.822 39.130 19.92 19.92 44.73 3.06
3464 8222 4.457834 TGCATGTCATTTGCATTCATGA 57.542 36.364 15.78 9.38 44.73 3.07
3472 8230 7.933728 TCATTTATATGTGCATGTCATTTGC 57.066 32.000 9.91 0.00 40.55 3.68
3473 8231 9.471084 ACATCATTTATATGTGCATGTCATTTG 57.529 29.630 9.91 3.69 36.24 2.32
3477 8235 9.872721 AAAAACATCATTTATATGTGCATGTCA 57.127 25.926 0.00 0.00 37.62 3.58
3552 8310 9.872757 GATCGTTACTTTGAAAACTTCATAACA 57.127 29.630 9.99 0.00 39.84 2.41
3553 8311 9.872757 TGATCGTTACTTTGAAAACTTCATAAC 57.127 29.630 0.00 0.00 39.84 1.89
3556 8314 9.965824 ATTTGATCGTTACTTTGAAAACTTCAT 57.034 25.926 0.00 0.00 39.84 2.57
3557 8315 9.232082 CATTTGATCGTTACTTTGAAAACTTCA 57.768 29.630 0.00 0.00 38.04 3.02
3558 8316 8.690840 CCATTTGATCGTTACTTTGAAAACTTC 58.309 33.333 0.00 0.00 0.00 3.01
3559 8317 8.194769 ACCATTTGATCGTTACTTTGAAAACTT 58.805 29.630 0.00 0.00 0.00 2.66
3560 8318 7.712797 ACCATTTGATCGTTACTTTGAAAACT 58.287 30.769 0.00 0.00 0.00 2.66
3561 8319 7.646130 TGACCATTTGATCGTTACTTTGAAAAC 59.354 33.333 0.00 0.00 0.00 2.43
3562 8320 7.708051 TGACCATTTGATCGTTACTTTGAAAA 58.292 30.769 0.00 0.00 0.00 2.29
3563 8321 7.265647 TGACCATTTGATCGTTACTTTGAAA 57.734 32.000 0.00 0.00 0.00 2.69
3564 8322 6.869315 TGACCATTTGATCGTTACTTTGAA 57.131 33.333 0.00 0.00 0.00 2.69
3565 8323 6.869315 TTGACCATTTGATCGTTACTTTGA 57.131 33.333 0.00 0.00 0.00 2.69
3566 8324 6.582295 CCTTTGACCATTTGATCGTTACTTTG 59.418 38.462 0.00 0.00 0.00 2.77
3567 8325 6.294508 CCCTTTGACCATTTGATCGTTACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3568 8326 5.183140 CCCTTTGACCATTTGATCGTTACTT 59.817 40.000 0.00 0.00 0.00 2.24
3569 8327 4.700213 CCCTTTGACCATTTGATCGTTACT 59.300 41.667 0.00 0.00 0.00 2.24
3570 8328 4.674362 GCCCTTTGACCATTTGATCGTTAC 60.674 45.833 0.00 0.00 0.00 2.50
3571 8329 3.442273 GCCCTTTGACCATTTGATCGTTA 59.558 43.478 0.00 0.00 0.00 3.18
3572 8330 2.231235 GCCCTTTGACCATTTGATCGTT 59.769 45.455 0.00 0.00 0.00 3.85
3573 8331 1.818674 GCCCTTTGACCATTTGATCGT 59.181 47.619 0.00 0.00 0.00 3.73
3574 8332 1.818060 TGCCCTTTGACCATTTGATCG 59.182 47.619 0.00 0.00 0.00 3.69
3575 8333 3.959535 TTGCCCTTTGACCATTTGATC 57.040 42.857 0.00 0.00 0.00 2.92
3576 8334 4.102996 ACTTTTGCCCTTTGACCATTTGAT 59.897 37.500 0.00 0.00 0.00 2.57
3577 8335 3.454082 ACTTTTGCCCTTTGACCATTTGA 59.546 39.130 0.00 0.00 0.00 2.69
3578 8336 3.807553 ACTTTTGCCCTTTGACCATTTG 58.192 40.909 0.00 0.00 0.00 2.32
3579 8337 5.823861 ATACTTTTGCCCTTTGACCATTT 57.176 34.783 0.00 0.00 0.00 2.32
3580 8338 6.723977 TCTTATACTTTTGCCCTTTGACCATT 59.276 34.615 0.00 0.00 0.00 3.16
3581 8339 6.252995 TCTTATACTTTTGCCCTTTGACCAT 58.747 36.000 0.00 0.00 0.00 3.55
3582 8340 5.636123 TCTTATACTTTTGCCCTTTGACCA 58.364 37.500 0.00 0.00 0.00 4.02
3583 8341 5.125578 CCTCTTATACTTTTGCCCTTTGACC 59.874 44.000 0.00 0.00 0.00 4.02
3584 8342 5.944007 TCCTCTTATACTTTTGCCCTTTGAC 59.056 40.000 0.00 0.00 0.00 3.18
3585 8343 6.134535 TCCTCTTATACTTTTGCCCTTTGA 57.865 37.500 0.00 0.00 0.00 2.69
3586 8344 5.163612 GCTCCTCTTATACTTTTGCCCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
3587 8345 4.950475 GCTCCTCTTATACTTTTGCCCTTT 59.050 41.667 0.00 0.00 0.00 3.11
3588 8346 4.018415 TGCTCCTCTTATACTTTTGCCCTT 60.018 41.667 0.00 0.00 0.00 3.95
3589 8347 3.523564 TGCTCCTCTTATACTTTTGCCCT 59.476 43.478 0.00 0.00 0.00 5.19
3590 8348 3.886123 TGCTCCTCTTATACTTTTGCCC 58.114 45.455 0.00 0.00 0.00 5.36
3591 8349 5.183140 TGTTTGCTCCTCTTATACTTTTGCC 59.817 40.000 0.00 0.00 0.00 4.52
3592 8350 6.086871 GTGTTTGCTCCTCTTATACTTTTGC 58.913 40.000 0.00 0.00 0.00 3.68
3593 8351 7.041098 AGTGTGTTTGCTCCTCTTATACTTTTG 60.041 37.037 0.00 0.00 0.00 2.44
3594 8352 6.998673 AGTGTGTTTGCTCCTCTTATACTTTT 59.001 34.615 0.00 0.00 0.00 2.27
3595 8353 6.534634 AGTGTGTTTGCTCCTCTTATACTTT 58.465 36.000 0.00 0.00 0.00 2.66
3596 8354 6.115448 AGTGTGTTTGCTCCTCTTATACTT 57.885 37.500 0.00 0.00 0.00 2.24
3597 8355 5.622460 CGAGTGTGTTTGCTCCTCTTATACT 60.622 44.000 0.00 0.00 0.00 2.12
3598 8356 4.563184 CGAGTGTGTTTGCTCCTCTTATAC 59.437 45.833 0.00 0.00 0.00 1.47
3599 8357 4.381612 CCGAGTGTGTTTGCTCCTCTTATA 60.382 45.833 0.00 0.00 0.00 0.98
3600 8358 3.589988 CGAGTGTGTTTGCTCCTCTTAT 58.410 45.455 0.00 0.00 0.00 1.73
3601 8359 2.288825 CCGAGTGTGTTTGCTCCTCTTA 60.289 50.000 0.00 0.00 0.00 2.10
3602 8360 1.541233 CCGAGTGTGTTTGCTCCTCTT 60.541 52.381 0.00 0.00 0.00 2.85
3603 8361 0.034059 CCGAGTGTGTTTGCTCCTCT 59.966 55.000 0.00 0.00 0.00 3.69
3604 8362 0.951040 CCCGAGTGTGTTTGCTCCTC 60.951 60.000 0.00 0.00 0.00 3.71
3605 8363 1.071471 CCCGAGTGTGTTTGCTCCT 59.929 57.895 0.00 0.00 0.00 3.69
3606 8364 2.617274 GCCCGAGTGTGTTTGCTCC 61.617 63.158 0.00 0.00 0.00 4.70
3607 8365 1.444119 TTGCCCGAGTGTGTTTGCTC 61.444 55.000 0.00 0.00 0.00 4.26
3608 8366 1.034838 TTTGCCCGAGTGTGTTTGCT 61.035 50.000 0.00 0.00 0.00 3.91
3609 8367 0.179124 TTTTGCCCGAGTGTGTTTGC 60.179 50.000 0.00 0.00 0.00 3.68
3610 8368 1.134175 AGTTTTGCCCGAGTGTGTTTG 59.866 47.619 0.00 0.00 0.00 2.93
3611 8369 1.134175 CAGTTTTGCCCGAGTGTGTTT 59.866 47.619 0.00 0.00 0.00 2.83
3612 8370 0.738389 CAGTTTTGCCCGAGTGTGTT 59.262 50.000 0.00 0.00 0.00 3.32
3613 8371 0.107410 TCAGTTTTGCCCGAGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
3614 8372 1.238439 ATCAGTTTTGCCCGAGTGTG 58.762 50.000 0.00 0.00 0.00 3.82
3615 8373 1.981256 AATCAGTTTTGCCCGAGTGT 58.019 45.000 0.00 0.00 0.00 3.55
3616 8374 3.369546 AAAATCAGTTTTGCCCGAGTG 57.630 42.857 0.00 0.00 36.24 3.51
3636 8394 6.306837 CGATTTGATTTGCCGCTAGTTAAAAA 59.693 34.615 0.00 0.00 0.00 1.94
3637 8395 5.797934 CGATTTGATTTGCCGCTAGTTAAAA 59.202 36.000 0.00 0.00 0.00 1.52
3638 8396 5.122554 TCGATTTGATTTGCCGCTAGTTAAA 59.877 36.000 0.00 0.00 0.00 1.52
3639 8397 4.632251 TCGATTTGATTTGCCGCTAGTTAA 59.368 37.500 0.00 0.00 0.00 2.01
3640 8398 4.185394 TCGATTTGATTTGCCGCTAGTTA 58.815 39.130 0.00 0.00 0.00 2.24
3641 8399 3.006940 TCGATTTGATTTGCCGCTAGTT 58.993 40.909 0.00 0.00 0.00 2.24
3642 8400 2.627945 TCGATTTGATTTGCCGCTAGT 58.372 42.857 0.00 0.00 0.00 2.57
3643 8401 3.548587 CATCGATTTGATTTGCCGCTAG 58.451 45.455 0.00 0.00 34.13 3.42
3644 8402 2.290367 CCATCGATTTGATTTGCCGCTA 59.710 45.455 0.00 0.00 34.13 4.26
3645 8403 1.066002 CCATCGATTTGATTTGCCGCT 59.934 47.619 0.00 0.00 34.13 5.52
3646 8404 1.480205 CCATCGATTTGATTTGCCGC 58.520 50.000 0.00 0.00 34.13 6.53
3647 8405 1.675483 TCCCATCGATTTGATTTGCCG 59.325 47.619 0.00 0.00 34.13 5.69
3648 8406 4.278170 TGTATCCCATCGATTTGATTTGCC 59.722 41.667 10.73 1.08 34.13 4.52
3649 8407 5.437289 TGTATCCCATCGATTTGATTTGC 57.563 39.130 10.73 4.69 34.13 3.68
3650 8408 7.031226 ACTTGTATCCCATCGATTTGATTTG 57.969 36.000 10.73 0.00 34.13 2.32
3651 8409 7.445402 CCTACTTGTATCCCATCGATTTGATTT 59.555 37.037 10.73 0.00 34.13 2.17
3652 8410 6.936900 CCTACTTGTATCCCATCGATTTGATT 59.063 38.462 10.73 0.00 34.13 2.57
3653 8411 6.467677 CCTACTTGTATCCCATCGATTTGAT 58.532 40.000 10.40 10.40 38.01 2.57
3654 8412 5.221641 CCCTACTTGTATCCCATCGATTTGA 60.222 44.000 0.00 0.00 31.92 2.69
3655 8413 4.997395 CCCTACTTGTATCCCATCGATTTG 59.003 45.833 0.00 0.00 31.92 2.32
3656 8414 4.041691 CCCCTACTTGTATCCCATCGATTT 59.958 45.833 0.00 0.00 31.92 2.17
3657 8415 3.583086 CCCCTACTTGTATCCCATCGATT 59.417 47.826 0.00 0.00 31.92 3.34
3658 8416 3.173965 CCCCTACTTGTATCCCATCGAT 58.826 50.000 0.00 0.00 34.73 3.59
3659 8417 2.605257 CCCCTACTTGTATCCCATCGA 58.395 52.381 0.00 0.00 0.00 3.59
3660 8418 1.002087 GCCCCTACTTGTATCCCATCG 59.998 57.143 0.00 0.00 0.00 3.84
3661 8419 2.054799 TGCCCCTACTTGTATCCCATC 58.945 52.381 0.00 0.00 0.00 3.51
3662 8420 2.206322 TGCCCCTACTTGTATCCCAT 57.794 50.000 0.00 0.00 0.00 4.00
3663 8421 2.206322 ATGCCCCTACTTGTATCCCA 57.794 50.000 0.00 0.00 0.00 4.37
3664 8422 4.717279 TTTATGCCCCTACTTGTATCCC 57.283 45.455 0.00 0.00 0.00 3.85
3665 8423 8.700439 TTAATTTTATGCCCCTACTTGTATCC 57.300 34.615 0.00 0.00 0.00 2.59
3671 8429 9.890915 TGGATAATTAATTTTATGCCCCTACTT 57.109 29.630 5.91 0.00 31.13 2.24
3672 8430 9.890915 TTGGATAATTAATTTTATGCCCCTACT 57.109 29.630 5.91 0.00 31.13 2.57
3674 8432 8.811994 GCTTGGATAATTAATTTTATGCCCCTA 58.188 33.333 5.91 0.00 31.13 3.53
3675 8433 7.256655 GGCTTGGATAATTAATTTTATGCCCCT 60.257 37.037 5.91 0.00 31.13 4.79
3676 8434 6.878923 GGCTTGGATAATTAATTTTATGCCCC 59.121 38.462 5.91 0.00 31.13 5.80
3677 8435 7.449247 TGGCTTGGATAATTAATTTTATGCCC 58.551 34.615 5.91 1.07 31.06 5.36
3678 8436 9.154847 GATGGCTTGGATAATTAATTTTATGCC 57.845 33.333 5.91 12.62 31.99 4.40
3679 8437 9.709495 TGATGGCTTGGATAATTAATTTTATGC 57.291 29.630 5.91 0.95 32.37 3.14
3682 8440 8.356657 CGGTGATGGCTTGGATAATTAATTTTA 58.643 33.333 5.91 0.00 0.00 1.52
3683 8441 7.209475 CGGTGATGGCTTGGATAATTAATTTT 58.791 34.615 5.91 0.00 0.00 1.82
3684 8442 6.738453 GCGGTGATGGCTTGGATAATTAATTT 60.738 38.462 5.91 0.00 0.00 1.82
3685 8443 5.278957 GCGGTGATGGCTTGGATAATTAATT 60.279 40.000 5.89 5.89 0.00 1.40
3686 8444 4.218417 GCGGTGATGGCTTGGATAATTAAT 59.782 41.667 0.00 0.00 0.00 1.40
3687 8445 3.568007 GCGGTGATGGCTTGGATAATTAA 59.432 43.478 0.00 0.00 0.00 1.40
3688 8446 3.146066 GCGGTGATGGCTTGGATAATTA 58.854 45.455 0.00 0.00 0.00 1.40
3689 8447 1.956477 GCGGTGATGGCTTGGATAATT 59.044 47.619 0.00 0.00 0.00 1.40
3690 8448 1.609208 GCGGTGATGGCTTGGATAAT 58.391 50.000 0.00 0.00 0.00 1.28
3691 8449 0.465460 GGCGGTGATGGCTTGGATAA 60.465 55.000 0.00 0.00 0.00 1.75
3692 8450 1.148273 GGCGGTGATGGCTTGGATA 59.852 57.895 0.00 0.00 0.00 2.59
3693 8451 2.124151 GGCGGTGATGGCTTGGAT 60.124 61.111 0.00 0.00 0.00 3.41
3694 8452 4.776322 CGGCGGTGATGGCTTGGA 62.776 66.667 0.00 0.00 0.00 3.53
3721 8479 1.048724 TCATCACTAGGAAGCGGGGG 61.049 60.000 0.00 0.00 0.00 5.40
3722 8480 0.830648 TTCATCACTAGGAAGCGGGG 59.169 55.000 0.00 0.00 0.00 5.73
3723 8481 1.482593 AGTTCATCACTAGGAAGCGGG 59.517 52.381 0.00 0.00 31.97 6.13
3724 8482 2.969628 AGTTCATCACTAGGAAGCGG 57.030 50.000 0.00 0.00 31.97 5.52
3725 8483 4.245660 TGAAAGTTCATCACTAGGAAGCG 58.754 43.478 0.00 0.00 32.94 4.68
3726 8484 7.712639 TGATATGAAAGTTCATCACTAGGAAGC 59.287 37.037 9.76 0.00 44.17 3.86
3727 8485 9.775854 ATGATATGAAAGTTCATCACTAGGAAG 57.224 33.333 9.76 0.00 44.17 3.46
3728 8486 9.770097 GATGATATGAAAGTTCATCACTAGGAA 57.230 33.333 9.76 0.00 44.17 3.36
3729 8487 8.370940 GGATGATATGAAAGTTCATCACTAGGA 58.629 37.037 9.76 0.00 44.17 2.94
3730 8488 8.152898 TGGATGATATGAAAGTTCATCACTAGG 58.847 37.037 9.76 0.00 44.17 3.02
3731 8489 9.551734 TTGGATGATATGAAAGTTCATCACTAG 57.448 33.333 9.76 0.00 44.17 2.57
3732 8490 9.551734 CTTGGATGATATGAAAGTTCATCACTA 57.448 33.333 9.76 0.00 44.17 2.74
3733 8491 8.051535 ACTTGGATGATATGAAAGTTCATCACT 58.948 33.333 9.76 0.00 44.17 3.41
3734 8492 8.218338 ACTTGGATGATATGAAAGTTCATCAC 57.782 34.615 9.76 6.62 44.17 3.06
3735 8493 7.225341 CGACTTGGATGATATGAAAGTTCATCA 59.775 37.037 9.76 4.99 44.17 3.07
3736 8494 7.571026 CGACTTGGATGATATGAAAGTTCATC 58.429 38.462 9.76 4.03 44.17 2.92
3738 8496 5.294306 GCGACTTGGATGATATGAAAGTTCA 59.706 40.000 0.00 0.00 42.14 3.18
3739 8497 5.525378 AGCGACTTGGATGATATGAAAGTTC 59.475 40.000 0.00 0.00 31.45 3.01
3740 8498 5.431765 AGCGACTTGGATGATATGAAAGTT 58.568 37.500 0.00 0.00 31.45 2.66
3741 8499 5.028549 AGCGACTTGGATGATATGAAAGT 57.971 39.130 0.00 0.00 33.91 2.66
3742 8500 4.149571 CGAGCGACTTGGATGATATGAAAG 59.850 45.833 0.00 0.00 0.00 2.62
3743 8501 4.051237 CGAGCGACTTGGATGATATGAAA 58.949 43.478 0.00 0.00 0.00 2.69
3744 8502 3.552890 CCGAGCGACTTGGATGATATGAA 60.553 47.826 7.20 0.00 37.20 2.57
3745 8503 2.029918 CCGAGCGACTTGGATGATATGA 60.030 50.000 7.20 0.00 37.20 2.15
3746 8504 2.029918 TCCGAGCGACTTGGATGATATG 60.030 50.000 10.68 0.00 38.98 1.78
3747 8505 2.239400 TCCGAGCGACTTGGATGATAT 58.761 47.619 10.68 0.00 38.98 1.63
3748 8506 1.687563 TCCGAGCGACTTGGATGATA 58.312 50.000 10.68 0.00 38.98 2.15
3749 8507 0.824109 TTCCGAGCGACTTGGATGAT 59.176 50.000 14.25 0.00 42.95 2.45
3750 8508 0.108804 GTTCCGAGCGACTTGGATGA 60.109 55.000 14.25 1.44 42.95 2.92
3751 8509 0.389817 TGTTCCGAGCGACTTGGATG 60.390 55.000 14.25 0.00 42.95 3.51
3752 8510 0.537188 ATGTTCCGAGCGACTTGGAT 59.463 50.000 14.25 0.86 42.95 3.41
3753 8511 0.108804 GATGTTCCGAGCGACTTGGA 60.109 55.000 10.68 10.68 41.88 3.53
3754 8512 0.389817 TGATGTTCCGAGCGACTTGG 60.390 55.000 6.76 6.76 36.39 3.61
3755 8513 1.325640 CATGATGTTCCGAGCGACTTG 59.674 52.381 0.00 0.00 0.00 3.16
3756 8514 1.204704 TCATGATGTTCCGAGCGACTT 59.795 47.619 0.00 0.00 0.00 3.01
3757 8515 0.817654 TCATGATGTTCCGAGCGACT 59.182 50.000 0.00 0.00 0.00 4.18
3758 8516 1.324736 GTTCATGATGTTCCGAGCGAC 59.675 52.381 0.00 0.00 0.00 5.19
3759 8517 1.067213 TGTTCATGATGTTCCGAGCGA 60.067 47.619 0.00 0.00 0.00 4.93
3760 8518 1.358877 TGTTCATGATGTTCCGAGCG 58.641 50.000 0.00 0.00 0.00 5.03
3761 8519 2.744202 AGTTGTTCATGATGTTCCGAGC 59.256 45.455 0.00 0.00 0.00 5.03
3762 8520 4.378770 CCAAGTTGTTCATGATGTTCCGAG 60.379 45.833 0.00 0.00 0.00 4.63
3763 8521 3.501828 CCAAGTTGTTCATGATGTTCCGA 59.498 43.478 0.00 0.00 0.00 4.55
3764 8522 3.825308 CCAAGTTGTTCATGATGTTCCG 58.175 45.455 0.00 0.00 0.00 4.30
3765 8523 3.256631 AGCCAAGTTGTTCATGATGTTCC 59.743 43.478 0.00 0.00 0.00 3.62
3766 8524 4.510038 AGCCAAGTTGTTCATGATGTTC 57.490 40.909 0.00 0.00 0.00 3.18
3767 8525 5.711506 TGATAGCCAAGTTGTTCATGATGTT 59.288 36.000 0.00 0.00 0.00 2.71
3768 8526 5.255687 TGATAGCCAAGTTGTTCATGATGT 58.744 37.500 0.00 0.00 0.00 3.06
3769 8527 5.823209 TGATAGCCAAGTTGTTCATGATG 57.177 39.130 0.00 0.00 0.00 3.07
3770 8528 6.839124 TTTGATAGCCAAGTTGTTCATGAT 57.161 33.333 0.00 0.00 35.94 2.45
3771 8529 6.839124 ATTTGATAGCCAAGTTGTTCATGA 57.161 33.333 1.45 0.00 35.94 3.07
3772 8530 9.888878 CTATATTTGATAGCCAAGTTGTTCATG 57.111 33.333 1.45 0.00 35.94 3.07
3773 8531 9.851686 TCTATATTTGATAGCCAAGTTGTTCAT 57.148 29.630 1.45 0.00 35.94 2.57
3774 8532 9.851686 ATCTATATTTGATAGCCAAGTTGTTCA 57.148 29.630 1.45 0.00 35.94 3.18
3776 8534 8.571336 GCATCTATATTTGATAGCCAAGTTGTT 58.429 33.333 1.45 0.00 35.94 2.83
3777 8535 7.175641 GGCATCTATATTTGATAGCCAAGTTGT 59.824 37.037 16.93 0.00 37.69 3.32
3778 8536 7.533426 GGCATCTATATTTGATAGCCAAGTTG 58.467 38.462 16.93 0.00 37.69 3.16
3779 8537 6.372659 CGGCATCTATATTTGATAGCCAAGTT 59.627 38.462 19.17 0.00 37.66 2.66
3780 8538 5.877012 CGGCATCTATATTTGATAGCCAAGT 59.123 40.000 19.17 0.00 37.66 3.16
3781 8539 5.877012 ACGGCATCTATATTTGATAGCCAAG 59.123 40.000 19.17 12.57 37.66 3.61
3782 8540 5.804639 ACGGCATCTATATTTGATAGCCAA 58.195 37.500 19.17 0.00 37.66 4.52
3783 8541 5.420725 ACGGCATCTATATTTGATAGCCA 57.579 39.130 19.17 0.00 37.66 4.75
3784 8542 7.843490 TTAACGGCATCTATATTTGATAGCC 57.157 36.000 14.45 14.45 36.12 3.93
3788 8546 9.912634 CCAATTTTAACGGCATCTATATTTGAT 57.087 29.630 0.00 0.00 0.00 2.57
3789 8547 8.908903 ACCAATTTTAACGGCATCTATATTTGA 58.091 29.630 0.00 0.00 0.00 2.69
3790 8548 8.967218 CACCAATTTTAACGGCATCTATATTTG 58.033 33.333 0.00 0.00 0.00 2.32
3791 8549 8.141268 CCACCAATTTTAACGGCATCTATATTT 58.859 33.333 0.00 0.00 0.00 1.40
3792 8550 7.504238 TCCACCAATTTTAACGGCATCTATATT 59.496 33.333 0.00 0.00 0.00 1.28
3793 8551 7.001674 TCCACCAATTTTAACGGCATCTATAT 58.998 34.615 0.00 0.00 0.00 0.86
3794 8552 6.358178 TCCACCAATTTTAACGGCATCTATA 58.642 36.000 0.00 0.00 0.00 1.31
3795 8553 5.197451 TCCACCAATTTTAACGGCATCTAT 58.803 37.500 0.00 0.00 0.00 1.98
3796 8554 4.590918 TCCACCAATTTTAACGGCATCTA 58.409 39.130 0.00 0.00 0.00 1.98
3797 8555 3.426615 TCCACCAATTTTAACGGCATCT 58.573 40.909 0.00 0.00 0.00 2.90
3798 8556 3.859411 TCCACCAATTTTAACGGCATC 57.141 42.857 0.00 0.00 0.00 3.91
3799 8557 3.056179 CCTTCCACCAATTTTAACGGCAT 60.056 43.478 0.00 0.00 0.00 4.40
3800 8558 2.297597 CCTTCCACCAATTTTAACGGCA 59.702 45.455 0.00 0.00 0.00 5.69
3801 8559 2.297880 ACCTTCCACCAATTTTAACGGC 59.702 45.455 0.00 0.00 0.00 5.68
3802 8560 4.519730 TGTACCTTCCACCAATTTTAACGG 59.480 41.667 0.00 0.00 0.00 4.44
3803 8561 5.692613 TGTACCTTCCACCAATTTTAACG 57.307 39.130 0.00 0.00 0.00 3.18
3804 8562 8.896320 ATTTTGTACCTTCCACCAATTTTAAC 57.104 30.769 0.00 0.00 0.00 2.01
3805 8563 9.984190 GTATTTTGTACCTTCCACCAATTTTAA 57.016 29.630 0.00 0.00 0.00 1.52
3806 8564 9.144298 TGTATTTTGTACCTTCCACCAATTTTA 57.856 29.630 0.00 0.00 0.00 1.52
3807 8565 8.024145 TGTATTTTGTACCTTCCACCAATTTT 57.976 30.769 0.00 0.00 0.00 1.82
3808 8566 7.604657 TGTATTTTGTACCTTCCACCAATTT 57.395 32.000 0.00 0.00 0.00 1.82
3809 8567 7.604657 TTGTATTTTGTACCTTCCACCAATT 57.395 32.000 0.00 0.00 0.00 2.32
3810 8568 7.070074 TGTTTGTATTTTGTACCTTCCACCAAT 59.930 33.333 0.00 0.00 0.00 3.16
3811 8569 6.380274 TGTTTGTATTTTGTACCTTCCACCAA 59.620 34.615 0.00 0.00 0.00 3.67
3812 8570 5.892119 TGTTTGTATTTTGTACCTTCCACCA 59.108 36.000 0.00 0.00 0.00 4.17
3813 8571 6.183360 TGTGTTTGTATTTTGTACCTTCCACC 60.183 38.462 0.00 0.00 0.00 4.61
3814 8572 6.797454 TGTGTTTGTATTTTGTACCTTCCAC 58.203 36.000 0.00 0.00 0.00 4.02
3815 8573 6.039941 CCTGTGTTTGTATTTTGTACCTTCCA 59.960 38.462 0.00 0.00 0.00 3.53
3816 8574 6.443792 CCTGTGTTTGTATTTTGTACCTTCC 58.556 40.000 0.00 0.00 0.00 3.46
3817 8575 6.040054 ACCCTGTGTTTGTATTTTGTACCTTC 59.960 38.462 0.00 0.00 0.00 3.46
3818 8576 5.894964 ACCCTGTGTTTGTATTTTGTACCTT 59.105 36.000 0.00 0.00 0.00 3.50
3819 8577 5.451354 ACCCTGTGTTTGTATTTTGTACCT 58.549 37.500 0.00 0.00 0.00 3.08
3838 8599 7.578458 TCCTTCCAAAAGTAATAGTAACCCT 57.422 36.000 0.00 0.00 0.00 4.34
3870 8633 9.640952 TTGAGGGTTTAATATATCCTTTTCCAG 57.359 33.333 0.00 0.00 0.00 3.86
3871 8634 9.640952 CTTGAGGGTTTAATATATCCTTTTCCA 57.359 33.333 0.00 0.00 0.00 3.53
3873 8636 9.862149 TCCTTGAGGGTTTAATATATCCTTTTC 57.138 33.333 0.00 0.00 36.25 2.29
3947 9117 3.188786 CCGCGAAGGAGCTTTCCG 61.189 66.667 8.23 0.00 45.00 4.30
3948 9118 3.500642 GCCGCGAAGGAGCTTTCC 61.501 66.667 8.23 0.00 45.00 3.13
4043 9216 2.513738 CCACCATTAGAATTCCTGGGGA 59.486 50.000 18.50 0.00 33.86 4.81
4084 9259 0.873312 CTCGAGCATGGATGTCGTGG 60.873 60.000 0.00 4.01 34.92 4.94
4181 9356 2.737376 GAGGCGTCGACCCACAAC 60.737 66.667 20.68 8.81 0.00 3.32
4235 9410 2.355756 CGAGTTATAGTTTCGTCCCGGA 59.644 50.000 0.73 0.00 0.00 5.14
4298 9474 8.855110 TGTATTTCCTTTAGCTGACAATTCAAA 58.145 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.