Multiple sequence alignment - TraesCS6A01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G106800 chr6A 100.000 3797 0 0 1 3797 74907870 74904074 0.000000e+00 7012
1 TraesCS6A01G106800 chr4D 92.988 3052 143 20 785 3797 133468690 133471709 0.000000e+00 4385
2 TraesCS6A01G106800 chr4D 92.703 603 39 4 33 630 353856717 353856115 0.000000e+00 865
3 TraesCS6A01G106800 chr4D 90.909 132 8 1 629 760 133468470 133468597 1.400000e-39 174
4 TraesCS6A01G106800 chr6D 96.484 2304 56 8 877 3156 58856861 58854559 0.000000e+00 3783
5 TraesCS6A01G106800 chr6D 97.364 645 17 0 3153 3797 58842868 58842224 0.000000e+00 1098
6 TraesCS6A01G106800 chr6D 96.748 123 4 0 621 743 58896146 58896024 4.970000e-49 206
7 TraesCS6A01G106800 chr6D 86.538 156 8 5 728 882 58896012 58895869 3.930000e-35 159
8 TraesCS6A01G106800 chr6B 96.318 2200 49 10 621 2799 132432814 132430626 0.000000e+00 3585
9 TraesCS6A01G106800 chr6B 92.234 837 59 4 2964 3795 132422842 132422007 0.000000e+00 1181
10 TraesCS6A01G106800 chr6B 91.549 71 6 0 2793 2863 132430443 132430373 8.680000e-17 99
11 TraesCS6A01G106800 chr4A 89.701 1971 137 20 1847 3797 428164093 428162169 0.000000e+00 2455
12 TraesCS6A01G106800 chr4A 92.480 984 35 8 624 1572 428260039 428259060 0.000000e+00 1371
13 TraesCS6A01G106800 chr4A 92.397 605 39 5 33 632 639031932 639032534 0.000000e+00 856
14 TraesCS6A01G106800 chr4A 93.885 278 11 1 1568 1845 428253791 428253520 7.590000e-112 414
15 TraesCS6A01G106800 chr1B 92.893 605 38 4 33 632 667804649 667805253 0.000000e+00 874
16 TraesCS6A01G106800 chr5D 92.409 606 39 6 33 632 534056733 534057337 0.000000e+00 857
17 TraesCS6A01G106800 chr7B 92.371 603 43 3 33 632 578214201 578214803 0.000000e+00 856
18 TraesCS6A01G106800 chr7B 92.040 603 45 3 33 632 733408273 733407671 0.000000e+00 845
19 TraesCS6A01G106800 chr7B 78.969 718 114 27 1118 1815 671702156 671702856 4.470000e-124 455
20 TraesCS6A01G106800 chr5A 92.384 604 41 5 33 632 326907535 326906933 0.000000e+00 856
21 TraesCS6A01G106800 chr5A 81.276 721 123 8 2015 2723 626119929 626119209 1.180000e-159 573
22 TraesCS6A01G106800 chr3A 92.053 604 43 5 33 632 725958857 725959459 0.000000e+00 845
23 TraesCS6A01G106800 chr3A 82.065 736 110 13 2003 2718 609687759 609687026 3.240000e-170 608
24 TraesCS6A01G106800 chr3A 80.497 805 126 25 1053 1843 609688715 609687928 4.230000e-164 588
25 TraesCS6A01G106800 chr3A 78.629 248 30 16 3177 3405 174547243 174547486 3.950000e-30 143
26 TraesCS6A01G106800 chr3B 91.874 603 45 4 33 632 106759752 106759151 0.000000e+00 839
27 TraesCS6A01G106800 chr3B 81.877 767 110 20 1972 2713 620454968 620454206 1.500000e-173 619
28 TraesCS6A01G106800 chr3B 79.627 805 133 25 1053 1843 620455890 620455103 1.990000e-152 549
29 TraesCS6A01G106800 chr4B 88.588 701 62 8 2905 3592 161604399 161603704 0.000000e+00 835
30 TraesCS6A01G106800 chr4B 96.479 426 15 0 2278 2703 161620195 161619770 0.000000e+00 704
31 TraesCS6A01G106800 chr4B 86.728 324 13 6 753 1075 161621305 161621011 2.190000e-87 333
32 TraesCS6A01G106800 chr4B 87.892 223 20 2 3582 3797 161563106 161562884 4.870000e-64 255
33 TraesCS6A01G106800 chr5B 82.632 737 114 10 2000 2723 622605437 622606172 1.150000e-179 640
34 TraesCS6A01G106800 chr3D 81.356 767 114 21 1972 2713 466679145 466678383 7.020000e-167 597
35 TraesCS6A01G106800 chr3D 80.248 805 128 25 1053 1843 466680067 466679280 9.150000e-161 577
36 TraesCS6A01G106800 chr7A 78.492 716 121 27 1118 1815 682899100 682898400 4.500000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G106800 chr6A 74904074 74907870 3796 True 7012.0 7012 100.0000 1 3797 1 chr6A.!!$R1 3796
1 TraesCS6A01G106800 chr4D 133468470 133471709 3239 False 2279.5 4385 91.9485 629 3797 2 chr4D.!!$F1 3168
2 TraesCS6A01G106800 chr4D 353856115 353856717 602 True 865.0 865 92.7030 33 630 1 chr4D.!!$R1 597
3 TraesCS6A01G106800 chr6D 58854559 58856861 2302 True 3783.0 3783 96.4840 877 3156 1 chr6D.!!$R2 2279
4 TraesCS6A01G106800 chr6D 58842224 58842868 644 True 1098.0 1098 97.3640 3153 3797 1 chr6D.!!$R1 644
5 TraesCS6A01G106800 chr6B 132430373 132432814 2441 True 1842.0 3585 93.9335 621 2863 2 chr6B.!!$R2 2242
6 TraesCS6A01G106800 chr6B 132422007 132422842 835 True 1181.0 1181 92.2340 2964 3795 1 chr6B.!!$R1 831
7 TraesCS6A01G106800 chr4A 428162169 428164093 1924 True 2455.0 2455 89.7010 1847 3797 1 chr4A.!!$R1 1950
8 TraesCS6A01G106800 chr4A 428259060 428260039 979 True 1371.0 1371 92.4800 624 1572 1 chr4A.!!$R3 948
9 TraesCS6A01G106800 chr4A 639031932 639032534 602 False 856.0 856 92.3970 33 632 1 chr4A.!!$F1 599
10 TraesCS6A01G106800 chr1B 667804649 667805253 604 False 874.0 874 92.8930 33 632 1 chr1B.!!$F1 599
11 TraesCS6A01G106800 chr5D 534056733 534057337 604 False 857.0 857 92.4090 33 632 1 chr5D.!!$F1 599
12 TraesCS6A01G106800 chr7B 578214201 578214803 602 False 856.0 856 92.3710 33 632 1 chr7B.!!$F1 599
13 TraesCS6A01G106800 chr7B 733407671 733408273 602 True 845.0 845 92.0400 33 632 1 chr7B.!!$R1 599
14 TraesCS6A01G106800 chr7B 671702156 671702856 700 False 455.0 455 78.9690 1118 1815 1 chr7B.!!$F2 697
15 TraesCS6A01G106800 chr5A 326906933 326907535 602 True 856.0 856 92.3840 33 632 1 chr5A.!!$R1 599
16 TraesCS6A01G106800 chr5A 626119209 626119929 720 True 573.0 573 81.2760 2015 2723 1 chr5A.!!$R2 708
17 TraesCS6A01G106800 chr3A 725958857 725959459 602 False 845.0 845 92.0530 33 632 1 chr3A.!!$F2 599
18 TraesCS6A01G106800 chr3A 609687026 609688715 1689 True 598.0 608 81.2810 1053 2718 2 chr3A.!!$R1 1665
19 TraesCS6A01G106800 chr3B 106759151 106759752 601 True 839.0 839 91.8740 33 632 1 chr3B.!!$R1 599
20 TraesCS6A01G106800 chr3B 620454206 620455890 1684 True 584.0 619 80.7520 1053 2713 2 chr3B.!!$R2 1660
21 TraesCS6A01G106800 chr4B 161603704 161604399 695 True 835.0 835 88.5880 2905 3592 1 chr4B.!!$R2 687
22 TraesCS6A01G106800 chr4B 161619770 161621305 1535 True 518.5 704 91.6035 753 2703 2 chr4B.!!$R3 1950
23 TraesCS6A01G106800 chr5B 622605437 622606172 735 False 640.0 640 82.6320 2000 2723 1 chr5B.!!$F1 723
24 TraesCS6A01G106800 chr3D 466678383 466680067 1684 True 587.0 597 80.8020 1053 2713 2 chr3D.!!$R1 1660
25 TraesCS6A01G106800 chr7A 682898400 682899100 700 True 438.0 438 78.4920 1118 1815 1 chr7A.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.393132 GCCCTCCACTTCTAAGGTGC 60.393 60.000 0.00 0.0 33.78 5.01 F
1095 1236 3.055719 CGGTGGTTCATGGCGCTT 61.056 61.111 7.64 0.0 0.00 4.68 F
1821 1985 1.045350 TCATCCTTCCCCTGCTCTCG 61.045 60.000 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1826 0.321919 AGCAGAAGAAAGCGCCATCA 60.322 50.0 2.29 0.00 35.48 3.07 R
2122 2339 0.389296 ATGTTGTCGATCGCCGTCAA 60.389 50.0 11.09 10.03 42.24 3.18 R
3448 4609 0.546122 ATATTCCTTGGACTGCGCCA 59.454 50.0 4.18 0.00 35.78 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.994250 TCTCACCCCTTCTATCTCAAAATG 58.006 41.667 0.00 0.00 0.00 2.32
24 25 5.488919 TCTCACCCCTTCTATCTCAAAATGT 59.511 40.000 0.00 0.00 0.00 2.71
25 26 5.745227 TCACCCCTTCTATCTCAAAATGTC 58.255 41.667 0.00 0.00 0.00 3.06
26 27 4.884164 CACCCCTTCTATCTCAAAATGTCC 59.116 45.833 0.00 0.00 0.00 4.02
27 28 4.540099 ACCCCTTCTATCTCAAAATGTCCA 59.460 41.667 0.00 0.00 0.00 4.02
28 29 5.194537 ACCCCTTCTATCTCAAAATGTCCAT 59.805 40.000 0.00 0.00 0.00 3.41
29 30 5.533903 CCCCTTCTATCTCAAAATGTCCATG 59.466 44.000 0.00 0.00 0.00 3.66
30 31 5.533903 CCCTTCTATCTCAAAATGTCCATGG 59.466 44.000 4.97 4.97 0.00 3.66
31 32 6.125029 CCTTCTATCTCAAAATGTCCATGGT 58.875 40.000 12.58 0.00 0.00 3.55
167 168 2.408050 ACTGAAGCTGAGTACAAAGCG 58.592 47.619 12.51 3.49 44.34 4.68
215 216 6.721668 TCATATGGGTACAGTCTCTATTGAGG 59.278 42.308 2.13 0.00 40.58 3.86
246 247 4.154347 CTCCAGCTCGCCCTCCAC 62.154 72.222 0.00 0.00 0.00 4.02
251 252 1.000486 AGCTCGCCCTCCACTTCTA 60.000 57.895 0.00 0.00 0.00 2.10
252 253 0.614979 AGCTCGCCCTCCACTTCTAA 60.615 55.000 0.00 0.00 0.00 2.10
257 258 0.393132 GCCCTCCACTTCTAAGGTGC 60.393 60.000 0.00 0.00 33.78 5.01
300 301 8.840321 CATATCTTTCATCTAATCCGGTGTTTT 58.160 33.333 0.00 0.00 0.00 2.43
304 305 8.044309 TCTTTCATCTAATCCGGTGTTTTATGA 58.956 33.333 0.00 7.97 0.00 2.15
394 395 4.336889 TCAAGTTCATCTCGTCAAAGGT 57.663 40.909 0.00 0.00 0.00 3.50
444 445 4.590918 TCTTCCACAACCACAGTTTGTAA 58.409 39.130 0.00 0.00 32.45 2.41
643 649 4.915704 ACACTGTTTTATTGTGAACCGTG 58.084 39.130 8.54 8.54 42.74 4.94
685 697 6.252233 TCATCCACAAGGGTTTATGAATGAA 58.748 36.000 0.00 0.00 38.11 2.57
740 752 6.657875 CCTCCCACAAAGAGAAGATTAATCT 58.342 40.000 12.37 12.37 39.22 2.40
743 755 8.567285 TCCCACAAAGAGAAGATTAATCTTTC 57.433 34.615 27.24 23.49 46.47 2.62
769 781 6.357579 AGTTGATTATTGCCATTGTCCAAA 57.642 33.333 0.00 0.00 0.00 3.28
806 898 8.420945 CAATAGTAGTAATCAAATCGCTCGAAG 58.579 37.037 0.00 0.00 0.00 3.79
1095 1236 3.055719 CGGTGGTTCATGGCGCTT 61.056 61.111 7.64 0.00 0.00 4.68
1665 1826 1.226888 GCCGCCTAGACGAAACGAT 60.227 57.895 0.00 0.00 34.06 3.73
1821 1985 1.045350 TCATCCTTCCCCTGCTCTCG 61.045 60.000 0.00 0.00 0.00 4.04
1952 2157 4.090057 GCCAACCGCTGAAGTCGC 62.090 66.667 0.00 0.00 0.00 5.19
2850 4001 1.066143 CGTGGCTAGGTCTCAATTGGT 60.066 52.381 5.42 0.00 0.00 3.67
2851 4002 2.615493 CGTGGCTAGGTCTCAATTGGTT 60.615 50.000 5.42 0.00 0.00 3.67
2871 4022 8.635765 TTGGTTGAGACTTAAGCAAATCTAAT 57.364 30.769 18.85 0.00 41.05 1.73
2892 4043 9.194972 TCTAATTCAAATGGTATGGCATGTAAA 57.805 29.630 10.98 0.00 0.00 2.01
2973 4124 5.184479 ACGAATATAACATCGGCTAAGGCTA 59.816 40.000 9.73 0.00 43.11 3.93
2984 4135 5.554070 TCGGCTAAGGCTAGTTTAAGTTTT 58.446 37.500 0.00 0.00 38.73 2.43
3125 4279 0.318784 GAAGTGACTCGTCCGCAACT 60.319 55.000 0.00 0.00 0.00 3.16
3133 4287 2.743752 CGTCCGCAACTGCCTCATG 61.744 63.158 0.00 0.00 37.91 3.07
3270 4430 8.755018 GGTGCATGTTTAATCTTTATGTTATGC 58.245 33.333 0.00 0.00 38.07 3.14
3328 4488 9.424319 TCTACTTTGAATCAATCACAGTACTTC 57.576 33.333 0.00 0.00 45.09 3.01
3354 4515 9.679596 CTTATGTTTCAATTTCGATTTGCATTC 57.320 29.630 0.00 0.00 0.00 2.67
3367 4528 6.970613 TCGATTTGCATTCTGAATCTCATTTG 59.029 34.615 0.00 0.00 0.00 2.32
3424 4585 2.844195 TTGCTCTGCCCATGGTGGT 61.844 57.895 11.73 0.00 35.17 4.16
3519 4701 7.076842 AGGACATGAATTTTGATAGACGTTG 57.923 36.000 0.00 0.00 0.00 4.10
3611 4796 9.764363 CTATGTAGGAAAGCATATACTTCAACA 57.236 33.333 0.00 0.00 0.00 3.33
3752 4943 9.814899 TCAAATCAAACTAATCAAAGCAAAGAA 57.185 25.926 0.00 0.00 0.00 2.52
3766 4957 7.390162 TCAAAGCAAAGAAGAACACCAAAAATT 59.610 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.488919 ACATTTTGAGATAGAAGGGGTGAGA 59.511 40.000 0.00 0.00 0.00 3.27
1 2 5.749462 ACATTTTGAGATAGAAGGGGTGAG 58.251 41.667 0.00 0.00 0.00 3.51
2 3 5.339200 GGACATTTTGAGATAGAAGGGGTGA 60.339 44.000 0.00 0.00 0.00 4.02
3 4 4.884164 GGACATTTTGAGATAGAAGGGGTG 59.116 45.833 0.00 0.00 0.00 4.61
4 5 4.540099 TGGACATTTTGAGATAGAAGGGGT 59.460 41.667 0.00 0.00 0.00 4.95
5 6 5.116084 TGGACATTTTGAGATAGAAGGGG 57.884 43.478 0.00 0.00 0.00 4.79
6 7 5.533903 CCATGGACATTTTGAGATAGAAGGG 59.466 44.000 5.56 0.00 0.00 3.95
7 8 6.125029 ACCATGGACATTTTGAGATAGAAGG 58.875 40.000 21.47 0.00 0.00 3.46
8 9 8.206867 TCTACCATGGACATTTTGAGATAGAAG 58.793 37.037 21.47 0.00 0.00 2.85
9 10 8.089625 TCTACCATGGACATTTTGAGATAGAA 57.910 34.615 21.47 0.00 0.00 2.10
10 11 7.675161 TCTACCATGGACATTTTGAGATAGA 57.325 36.000 21.47 7.47 0.00 1.98
11 12 8.781196 CAATCTACCATGGACATTTTGAGATAG 58.219 37.037 21.47 5.00 0.00 2.08
12 13 7.720957 CCAATCTACCATGGACATTTTGAGATA 59.279 37.037 21.47 0.00 39.12 1.98
13 14 6.548622 CCAATCTACCATGGACATTTTGAGAT 59.451 38.462 21.47 9.50 39.12 2.75
14 15 5.887598 CCAATCTACCATGGACATTTTGAGA 59.112 40.000 21.47 7.65 39.12 3.27
15 16 5.068198 CCCAATCTACCATGGACATTTTGAG 59.932 44.000 21.47 2.78 39.12 3.02
16 17 4.955450 CCCAATCTACCATGGACATTTTGA 59.045 41.667 21.47 1.96 39.12 2.69
17 18 4.441913 GCCCAATCTACCATGGACATTTTG 60.442 45.833 21.47 14.17 39.12 2.44
18 19 3.706086 GCCCAATCTACCATGGACATTTT 59.294 43.478 21.47 2.28 39.12 1.82
19 20 3.052642 AGCCCAATCTACCATGGACATTT 60.053 43.478 21.47 3.80 39.12 2.32
20 21 2.515429 AGCCCAATCTACCATGGACATT 59.485 45.455 21.47 10.08 39.12 2.71
21 22 2.138542 AGCCCAATCTACCATGGACAT 58.861 47.619 21.47 3.74 39.12 3.06
22 23 1.212688 CAGCCCAATCTACCATGGACA 59.787 52.381 21.47 4.53 39.12 4.02
23 24 1.477558 CCAGCCCAATCTACCATGGAC 60.478 57.143 21.47 0.00 39.12 4.02
24 25 0.846015 CCAGCCCAATCTACCATGGA 59.154 55.000 21.47 0.67 39.12 3.41
25 26 0.552848 ACCAGCCCAATCTACCATGG 59.447 55.000 11.19 11.19 36.42 3.66
26 27 2.439507 ACTACCAGCCCAATCTACCATG 59.560 50.000 0.00 0.00 0.00 3.66
27 28 2.706190 GACTACCAGCCCAATCTACCAT 59.294 50.000 0.00 0.00 0.00 3.55
28 29 2.116238 GACTACCAGCCCAATCTACCA 58.884 52.381 0.00 0.00 0.00 3.25
29 30 1.416772 GGACTACCAGCCCAATCTACC 59.583 57.143 0.00 0.00 35.97 3.18
30 31 2.103263 CAGGACTACCAGCCCAATCTAC 59.897 54.545 0.00 0.00 38.94 2.59
31 32 2.023404 TCAGGACTACCAGCCCAATCTA 60.023 50.000 0.00 0.00 38.94 1.98
167 168 2.037136 AGCAGTCGCATCAGCAACC 61.037 57.895 0.00 0.00 42.27 3.77
215 216 1.476488 GCTGGAGAGACTCTCAACTCC 59.524 57.143 29.17 15.87 45.12 3.85
246 247 2.345641 CGATGTTGTCGCACCTTAGAAG 59.654 50.000 0.00 0.00 44.33 2.85
300 301 3.123050 CAATGTGCTTCGTCCGATCATA 58.877 45.455 0.00 0.00 0.00 2.15
304 305 1.645034 CTCAATGTGCTTCGTCCGAT 58.355 50.000 0.00 0.00 0.00 4.18
350 351 3.434637 ACAAAGTAGCTTTTGTGCAACG 58.565 40.909 14.28 0.00 46.44 4.10
359 360 8.854614 AGATGAACTTGATACAAAGTAGCTTT 57.145 30.769 0.00 0.00 39.48 3.51
394 395 3.248363 CGTGAAGATGTCAGCAAGTTGAA 59.752 43.478 7.16 0.00 36.74 2.69
444 445 2.093447 AGTTAAGATTGCGCCTACAGCT 60.093 45.455 4.18 0.00 40.39 4.24
580 583 4.827789 ACCCTAAATGAGGTGGCTATCTA 58.172 43.478 0.00 0.00 45.03 1.98
591 594 2.093973 ACTGCTCGACACCCTAAATGAG 60.094 50.000 0.00 0.00 0.00 2.90
592 595 1.899814 ACTGCTCGACACCCTAAATGA 59.100 47.619 0.00 0.00 0.00 2.57
594 597 3.335579 GAAACTGCTCGACACCCTAAAT 58.664 45.455 0.00 0.00 0.00 1.40
643 649 2.699954 TGAGACGAAAGGATGAAAGGC 58.300 47.619 0.00 0.00 0.00 4.35
685 697 4.021719 CAGACTGCACCCATGATTTTCTTT 60.022 41.667 0.00 0.00 0.00 2.52
740 752 6.767456 ACAATGGCAATAATCAACTTGGAAA 58.233 32.000 0.00 0.00 0.00 3.13
743 755 5.111293 GGACAATGGCAATAATCAACTTGG 58.889 41.667 0.00 0.00 0.00 3.61
769 781 8.500753 TGATTACTACTATTGTTTTTGCCGAT 57.499 30.769 0.00 0.00 0.00 4.18
1095 1236 3.709633 AGGATGAGCAGGCACGCA 61.710 61.111 1.66 0.00 0.00 5.24
1665 1826 0.321919 AGCAGAAGAAAGCGCCATCA 60.322 50.000 2.29 0.00 35.48 3.07
1952 2157 2.758089 GGATGCTCTGCCACTTGCG 61.758 63.158 0.00 0.00 45.60 4.85
2121 2338 0.597898 TGTTGTCGATCGCCGTCAAA 60.598 50.000 11.09 0.00 44.90 2.69
2122 2339 0.389296 ATGTTGTCGATCGCCGTCAA 60.389 50.000 11.09 10.03 42.24 3.18
2973 4124 9.543783 AAATCTCAGTCGACTAAAACTTAAACT 57.456 29.630 19.57 0.00 0.00 2.66
2984 4135 9.355215 GAGAATTTGTTAAATCTCAGTCGACTA 57.645 33.333 19.57 2.81 31.35 2.59
3133 4287 3.412408 GTGCCTCCTTCCTCCCCC 61.412 72.222 0.00 0.00 0.00 5.40
3328 4488 9.679596 GAATGCAAATCGAAATTGAAACATAAG 57.320 29.630 16.00 0.00 0.00 1.73
3354 4515 7.149973 ACCACAATTTGTCAAATGAGATTCAG 58.850 34.615 11.54 0.00 0.00 3.02
3367 4528 6.852345 GCATCATTTCAAAACCACAATTTGTC 59.148 34.615 0.00 0.00 38.57 3.18
3448 4609 0.546122 ATATTCCTTGGACTGCGCCA 59.454 50.000 4.18 0.00 35.78 5.69
3632 4817 6.266323 TGACATAAGAGTTACGAGATTCTGC 58.734 40.000 0.00 0.00 0.00 4.26
3752 4943 7.287696 AGTTCTACCATGAATTTTTGGTGTTCT 59.712 33.333 18.58 10.97 45.68 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.