Multiple sequence alignment - TraesCS6A01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G106600 chr6A 100.000 3655 0 0 1 3655 74411232 74414886 0.000000e+00 6750.0
1 TraesCS6A01G106600 chr7D 95.843 2718 84 12 552 3261 63608008 63610704 0.000000e+00 4366.0
2 TraesCS6A01G106600 chr7D 81.276 2163 300 58 672 2767 63642977 63645101 0.000000e+00 1653.0
3 TraesCS6A01G106600 chr7D 87.435 191 23 1 1945 2134 63603687 63603877 6.150000e-53 219.0
4 TraesCS6A01G106600 chr7B 89.949 1781 150 20 1364 3132 4098208 4099971 0.000000e+00 2270.0
5 TraesCS6A01G106600 chr7B 81.486 2220 311 52 608 2767 4147661 4149840 0.000000e+00 1731.0
6 TraesCS6A01G106600 chr7B 90.715 797 47 7 568 1340 4097421 4098214 0.000000e+00 1037.0
7 TraesCS6A01G106600 chr7B 85.864 191 26 1 1945 2134 4092237 4092427 6.190000e-48 202.0
8 TraesCS6A01G106600 chr7B 90.370 135 4 3 3127 3261 4135636 4135761 6.280000e-38 169.0
9 TraesCS6A01G106600 chr7A 88.952 1774 151 28 1364 3102 66427572 66429335 0.000000e+00 2148.0
10 TraesCS6A01G106600 chr7A 81.485 2263 302 66 572 2764 66608735 66610950 0.000000e+00 1749.0
11 TraesCS6A01G106600 chr7A 90.886 801 46 10 559 1340 66426786 66427578 0.000000e+00 1050.0
12 TraesCS6A01G106600 chr7A 86.806 576 47 10 5 555 46281359 46280788 1.870000e-172 616.0
13 TraesCS6A01G106600 chr7A 86.322 541 66 4 16 553 153916191 153915656 1.890000e-162 582.0
14 TraesCS6A01G106600 chr7A 87.848 395 43 2 3259 3652 66431390 66431780 3.330000e-125 459.0
15 TraesCS6A01G106600 chr7A 79.843 382 56 15 969 1339 66420315 66420686 3.620000e-65 259.0
16 TraesCS6A01G106600 chr7A 95.062 81 2 1 3127 3207 66432690 66432768 3.830000e-25 126.0
17 TraesCS6A01G106600 chr4D 88.809 554 53 7 16 564 121350467 121351016 0.000000e+00 671.0
18 TraesCS6A01G106600 chr2D 88.616 571 38 7 8 555 399205458 399206024 0.000000e+00 669.0
19 TraesCS6A01G106600 chr2D 87.265 479 50 7 11 485 6530853 6530382 1.490000e-148 536.0
20 TraesCS6A01G106600 chr3D 89.033 538 47 8 24 555 179871818 179871287 0.000000e+00 656.0
21 TraesCS6A01G106600 chr3D 87.597 516 52 9 17 524 43537802 43537291 4.070000e-164 588.0
22 TraesCS6A01G106600 chrUn 86.796 568 45 9 11 555 96375940 96376500 1.120000e-169 606.0
23 TraesCS6A01G106600 chr5D 86.392 485 56 8 44 524 206092344 206092822 4.180000e-144 521.0
24 TraesCS6A01G106600 chr5D 74.157 979 206 37 1765 2718 519700341 519699385 2.680000e-96 363.0
25 TraesCS6A01G106600 chr5D 79.612 309 56 3 955 1257 519701649 519701342 7.950000e-52 215.0
26 TraesCS6A01G106600 chr2B 85.602 507 46 7 72 555 480109871 480109369 1.170000e-139 507.0
27 TraesCS6A01G106600 chr1A 89.773 176 16 2 388 563 584430690 584430863 1.320000e-54 224.0
28 TraesCS6A01G106600 chr2A 91.837 49 3 1 3022 3070 29727751 29727704 2.360000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G106600 chr6A 74411232 74414886 3654 False 6750.00 6750 100.0000 1 3655 1 chr6A.!!$F1 3654
1 TraesCS6A01G106600 chr7D 63608008 63610704 2696 False 4366.00 4366 95.8430 552 3261 1 chr7D.!!$F2 2709
2 TraesCS6A01G106600 chr7D 63642977 63645101 2124 False 1653.00 1653 81.2760 672 2767 1 chr7D.!!$F3 2095
3 TraesCS6A01G106600 chr7B 4147661 4149840 2179 False 1731.00 1731 81.4860 608 2767 1 chr7B.!!$F3 2159
4 TraesCS6A01G106600 chr7B 4097421 4099971 2550 False 1653.50 2270 90.3320 568 3132 2 chr7B.!!$F4 2564
5 TraesCS6A01G106600 chr7A 66608735 66610950 2215 False 1749.00 1749 81.4850 572 2764 1 chr7A.!!$F2 2192
6 TraesCS6A01G106600 chr7A 66426786 66432768 5982 False 945.75 2148 90.6870 559 3652 4 chr7A.!!$F3 3093
7 TraesCS6A01G106600 chr7A 46280788 46281359 571 True 616.00 616 86.8060 5 555 1 chr7A.!!$R1 550
8 TraesCS6A01G106600 chr7A 153915656 153916191 535 True 582.00 582 86.3220 16 553 1 chr7A.!!$R2 537
9 TraesCS6A01G106600 chr4D 121350467 121351016 549 False 671.00 671 88.8090 16 564 1 chr4D.!!$F1 548
10 TraesCS6A01G106600 chr2D 399205458 399206024 566 False 669.00 669 88.6160 8 555 1 chr2D.!!$F1 547
11 TraesCS6A01G106600 chr3D 179871287 179871818 531 True 656.00 656 89.0330 24 555 1 chr3D.!!$R2 531
12 TraesCS6A01G106600 chr3D 43537291 43537802 511 True 588.00 588 87.5970 17 524 1 chr3D.!!$R1 507
13 TraesCS6A01G106600 chrUn 96375940 96376500 560 False 606.00 606 86.7960 11 555 1 chrUn.!!$F1 544
14 TraesCS6A01G106600 chr5D 519699385 519701649 2264 True 289.00 363 76.8845 955 2718 2 chr5D.!!$R1 1763
15 TraesCS6A01G106600 chr2B 480109369 480109871 502 True 507.00 507 85.6020 72 555 1 chr2B.!!$R1 483


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 396 0.308376 TTGCCCGTTTCTTTGTACGC 59.692 50.0 0.0 0.0 36.49 4.42 F
1071 1147 0.456312 CACTCAAGGTCGTAGGCGTC 60.456 60.0 0.0 0.0 39.49 5.19 F
1072 1148 0.892358 ACTCAAGGTCGTAGGCGTCA 60.892 55.0 0.0 0.0 39.49 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1413 0.181824 AGAGGACTCGTCTCCCTAGC 59.818 60.000 0.00 0.0 34.09 3.42 R
2059 2856 0.475475 CCCATCCTAGCTTCCATGCA 59.525 55.000 0.00 0.0 34.99 3.96 R
3018 3830 2.036346 GCAAGACAATGAGGCCAAACTT 59.964 45.455 5.01 0.0 0.00 2.66 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 283 6.662755 TCTAGGGTGCAATCTTAATCAACAT 58.337 36.000 0.00 0.00 0.00 2.71
323 329 3.758425 TCGGTACTGATCCGGATTATGA 58.242 45.455 20.22 7.32 46.82 2.15
336 342 6.591001 TCCGGATTATGAATGAACATCTCAA 58.409 36.000 0.00 0.00 37.67 3.02
354 361 6.070951 TCTCAACAAATCAGGATTGGAGAT 57.929 37.500 3.46 0.00 0.00 2.75
389 396 0.308376 TTGCCCGTTTCTTTGTACGC 59.692 50.000 0.00 0.00 36.49 4.42
421 450 5.624159 AGAAGACATGTGGAATCTTGAACA 58.376 37.500 1.15 0.00 32.83 3.18
477 506 3.381949 GCCGTAGCTACAAATACTCAGG 58.618 50.000 23.21 13.32 35.50 3.86
508 539 8.560374 AGACCATTTTCTATAAATTAAGAGCGC 58.440 33.333 0.00 0.00 0.00 5.92
566 597 7.665974 GGCCCTTTTGCTAGTGATTAGTAATAT 59.334 37.037 0.00 0.00 34.53 1.28
605 645 6.684686 TGTTCTGTAGGTCAACTATGTGTAC 58.315 40.000 0.00 0.00 33.43 2.90
664 704 4.698780 AGAAAATTAAGTACCCCACGAAGC 59.301 41.667 0.00 0.00 0.00 3.86
737 779 5.358922 AGGGTGAATTGTGTGAACAAAATG 58.641 37.500 0.00 0.00 34.22 2.32
758 813 4.877282 TGTTCGATCACATGAACTACACA 58.123 39.130 0.00 0.00 43.73 3.72
807 863 7.179338 CCAATGAGCCTATACTACTATGGTCTT 59.821 40.741 0.00 0.00 0.00 3.01
1071 1147 0.456312 CACTCAAGGTCGTAGGCGTC 60.456 60.000 0.00 0.00 39.49 5.19
1072 1148 0.892358 ACTCAAGGTCGTAGGCGTCA 60.892 55.000 0.00 0.00 39.49 4.35
1077 1153 1.760192 AGGTCGTAGGCGTCATACTT 58.240 50.000 0.00 0.00 39.49 2.24
1198 1280 2.813354 GCAGGCAATCATCTAAGAGGGG 60.813 54.545 0.00 0.00 0.00 4.79
1395 1483 6.068010 TGATGAGAGGAGAGGAAAGATAGTC 58.932 44.000 0.00 0.00 0.00 2.59
1465 1553 9.853555 GTGACATCATCATAATTGTTGGTAAAA 57.146 29.630 0.00 0.00 40.28 1.52
1481 1569 9.959749 TGTTGGTAAAATGAATCTTCAAACTAC 57.040 29.630 0.00 0.00 41.13 2.73
1633 1733 6.480320 GCATCCACTAACTATGAAGTTACCAG 59.520 42.308 0.00 0.00 44.26 4.00
1709 2487 7.672983 TTGGTTCTAGATGTGTTCTTCATTC 57.327 36.000 0.00 0.00 35.79 2.67
1725 2503 9.638239 GTTCTTCATTCACCATGCTTTTAATTA 57.362 29.630 0.00 0.00 32.13 1.40
2056 2853 9.403583 GTTGGAATAATATTGAGTAGGGACAAA 57.596 33.333 0.00 0.00 0.00 2.83
2059 2856 9.628500 GGAATAATATTGAGTAGGGACAAAAGT 57.372 33.333 0.00 0.00 0.00 2.66
2336 3140 1.079503 GCTTGAACTCATGGGTCGTC 58.920 55.000 0.00 0.00 33.55 4.20
2813 3623 5.520288 CAGTTTCACTATGACCTGGATAACG 59.480 44.000 0.00 0.00 0.00 3.18
2894 3704 9.632807 CTAGCAGTGTATTCTTAATCCATCTAC 57.367 37.037 0.00 0.00 0.00 2.59
3000 3812 7.938563 TTTTACTTGTTTGTGGTATGCATTC 57.061 32.000 3.54 0.00 0.00 2.67
3014 3826 6.208402 TGGTATGCATTCTTAGCACAGAAAAA 59.792 34.615 3.54 0.00 45.95 1.94
3018 3830 7.213216 TGCATTCTTAGCACAGAAAAATACA 57.787 32.000 2.03 0.00 36.36 2.29
3119 5311 9.372369 CTAATCACTTCTCGGAAGTAGAAAAAT 57.628 33.333 15.86 8.90 32.77 1.82
3171 7312 6.562223 TGGAATGGATTCATTGGTCTCCTATA 59.438 38.462 3.23 0.00 43.08 1.31
3172 7313 7.240405 TGGAATGGATTCATTGGTCTCCTATAT 59.760 37.037 3.23 0.00 43.08 0.86
3217 7358 1.137513 CGTTCTTGTTCCTCGTGGTC 58.862 55.000 2.99 0.00 34.23 4.02
3218 7359 1.269621 CGTTCTTGTTCCTCGTGGTCT 60.270 52.381 2.99 0.00 34.23 3.85
3219 7360 2.030540 CGTTCTTGTTCCTCGTGGTCTA 60.031 50.000 2.99 0.00 34.23 2.59
3220 7361 3.315418 GTTCTTGTTCCTCGTGGTCTAC 58.685 50.000 2.99 1.91 34.23 2.59
3221 7362 2.589720 TCTTGTTCCTCGTGGTCTACA 58.410 47.619 2.99 4.40 34.23 2.74
3222 7363 2.557056 TCTTGTTCCTCGTGGTCTACAG 59.443 50.000 2.99 2.74 34.23 2.74
3223 7364 0.601558 TGTTCCTCGTGGTCTACAGC 59.398 55.000 2.99 0.00 34.23 4.40
3253 7394 2.032860 AATCCGAGCTCCATGACCCG 62.033 60.000 8.47 0.00 0.00 5.28
3261 7402 0.947244 CTCCATGACCCGCAATAAGC 59.053 55.000 0.00 0.00 40.87 3.09
3262 7403 0.546122 TCCATGACCCGCAATAAGCT 59.454 50.000 0.00 0.00 42.61 3.74
3263 7404 0.947244 CCATGACCCGCAATAAGCTC 59.053 55.000 0.00 0.00 42.61 4.09
3264 7405 1.667236 CATGACCCGCAATAAGCTCA 58.333 50.000 0.00 0.00 42.61 4.26
3265 7406 1.331756 CATGACCCGCAATAAGCTCAC 59.668 52.381 0.00 0.00 42.61 3.51
3266 7407 0.323302 TGACCCGCAATAAGCTCACA 59.677 50.000 0.00 0.00 42.61 3.58
3267 7408 0.727398 GACCCGCAATAAGCTCACAC 59.273 55.000 0.00 0.00 42.61 3.82
3268 7409 0.676782 ACCCGCAATAAGCTCACACC 60.677 55.000 0.00 0.00 42.61 4.16
3269 7410 0.676466 CCCGCAATAAGCTCACACCA 60.676 55.000 0.00 0.00 42.61 4.17
3270 7411 0.447801 CCGCAATAAGCTCACACCAC 59.552 55.000 0.00 0.00 42.61 4.16
3271 7412 0.447801 CGCAATAAGCTCACACCACC 59.552 55.000 0.00 0.00 42.61 4.61
3272 7413 0.811281 GCAATAAGCTCACACCACCC 59.189 55.000 0.00 0.00 41.15 4.61
3273 7414 1.463674 CAATAAGCTCACACCACCCC 58.536 55.000 0.00 0.00 0.00 4.95
3274 7415 1.004745 CAATAAGCTCACACCACCCCT 59.995 52.381 0.00 0.00 0.00 4.79
3275 7416 0.620556 ATAAGCTCACACCACCCCTG 59.379 55.000 0.00 0.00 0.00 4.45
3276 7417 1.488705 TAAGCTCACACCACCCCTGG 61.489 60.000 0.00 0.00 44.26 4.45
3278 7419 3.569210 CTCACACCACCCCTGGCA 61.569 66.667 0.00 0.00 42.08 4.92
3279 7420 3.099841 TCACACCACCCCTGGCAA 61.100 61.111 0.00 0.00 42.08 4.52
3280 7421 2.598394 CACACCACCCCTGGCAAG 60.598 66.667 0.00 0.00 42.08 4.01
3281 7422 4.603535 ACACCACCCCTGGCAAGC 62.604 66.667 0.00 0.00 42.08 4.01
3282 7423 4.601794 CACCACCCCTGGCAAGCA 62.602 66.667 0.00 0.00 42.08 3.91
3283 7424 3.831637 ACCACCCCTGGCAAGCAA 61.832 61.111 0.00 0.00 42.08 3.91
3284 7425 2.284112 CCACCCCTGGCAAGCAAT 60.284 61.111 0.00 0.00 0.00 3.56
3285 7426 2.652095 CCACCCCTGGCAAGCAATG 61.652 63.158 0.00 0.00 0.00 2.82
3286 7427 2.284112 ACCCCTGGCAAGCAATGG 60.284 61.111 0.00 0.00 0.00 3.16
3304 7445 3.499737 CAAGCCACCGCCATCGTC 61.500 66.667 0.00 0.00 34.57 4.20
3305 7446 3.706373 AAGCCACCGCCATCGTCT 61.706 61.111 0.00 0.00 34.57 4.18
3306 7447 2.355986 AAGCCACCGCCATCGTCTA 61.356 57.895 0.00 0.00 34.57 2.59
3307 7448 2.573609 AAGCCACCGCCATCGTCTAC 62.574 60.000 0.00 0.00 34.57 2.59
3308 7449 2.889617 CCACCGCCATCGTCTACA 59.110 61.111 0.00 0.00 0.00 2.74
3309 7450 1.216977 CCACCGCCATCGTCTACAA 59.783 57.895 0.00 0.00 0.00 2.41
3310 7451 0.806102 CCACCGCCATCGTCTACAAG 60.806 60.000 0.00 0.00 0.00 3.16
3311 7452 0.172578 CACCGCCATCGTCTACAAGA 59.827 55.000 0.00 0.00 0.00 3.02
3312 7453 0.456221 ACCGCCATCGTCTACAAGAG 59.544 55.000 0.00 0.00 0.00 2.85
3313 7454 0.249073 CCGCCATCGTCTACAAGAGG 60.249 60.000 0.00 0.00 0.00 3.69
3314 7455 0.456221 CGCCATCGTCTACAAGAGGT 59.544 55.000 0.00 0.00 32.36 3.85
3315 7456 1.534175 CGCCATCGTCTACAAGAGGTC 60.534 57.143 0.00 0.00 32.36 3.85
3316 7457 1.202428 GCCATCGTCTACAAGAGGTCC 60.202 57.143 0.00 0.00 32.36 4.46
3317 7458 1.409427 CCATCGTCTACAAGAGGTCCC 59.591 57.143 0.00 0.00 32.36 4.46
3318 7459 1.409427 CATCGTCTACAAGAGGTCCCC 59.591 57.143 0.00 0.00 32.36 4.81
3319 7460 0.679002 TCGTCTACAAGAGGTCCCCG 60.679 60.000 0.00 0.00 32.36 5.73
3320 7461 1.516423 GTCTACAAGAGGTCCCCGC 59.484 63.158 0.00 0.00 0.00 6.13
3321 7462 2.050350 TCTACAAGAGGTCCCCGCG 61.050 63.158 0.00 0.00 0.00 6.46
3322 7463 3.718210 CTACAAGAGGTCCCCGCGC 62.718 68.421 0.00 0.00 0.00 6.86
3339 7480 4.814294 CCGCCTCGCCTACACCAC 62.814 72.222 0.00 0.00 0.00 4.16
3340 7481 3.760035 CGCCTCGCCTACACCACT 61.760 66.667 0.00 0.00 0.00 4.00
3341 7482 2.663196 GCCTCGCCTACACCACTT 59.337 61.111 0.00 0.00 0.00 3.16
3342 7483 1.003718 GCCTCGCCTACACCACTTT 60.004 57.895 0.00 0.00 0.00 2.66
3343 7484 0.605589 GCCTCGCCTACACCACTTTT 60.606 55.000 0.00 0.00 0.00 2.27
3344 7485 1.439679 CCTCGCCTACACCACTTTTC 58.560 55.000 0.00 0.00 0.00 2.29
3345 7486 1.068474 CTCGCCTACACCACTTTTCG 58.932 55.000 0.00 0.00 0.00 3.46
3346 7487 0.390124 TCGCCTACACCACTTTTCGT 59.610 50.000 0.00 0.00 0.00 3.85
3347 7488 1.202557 TCGCCTACACCACTTTTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
3348 7489 1.070175 CGCCTACACCACTTTTCGTTG 60.070 52.381 0.00 0.00 0.00 4.10
3349 7490 2.215196 GCCTACACCACTTTTCGTTGA 58.785 47.619 0.00 0.00 0.00 3.18
3350 7491 2.812011 GCCTACACCACTTTTCGTTGAT 59.188 45.455 0.00 0.00 0.00 2.57
3351 7492 3.120304 GCCTACACCACTTTTCGTTGATC 60.120 47.826 0.00 0.00 0.00 2.92
3352 7493 4.315803 CCTACACCACTTTTCGTTGATCT 58.684 43.478 0.00 0.00 0.00 2.75
3353 7494 4.755123 CCTACACCACTTTTCGTTGATCTT 59.245 41.667 0.00 0.00 0.00 2.40
3354 7495 4.552166 ACACCACTTTTCGTTGATCTTG 57.448 40.909 0.00 0.00 0.00 3.02
3355 7496 3.945285 ACACCACTTTTCGTTGATCTTGT 59.055 39.130 0.00 0.00 0.00 3.16
3356 7497 4.035208 ACACCACTTTTCGTTGATCTTGTC 59.965 41.667 0.00 0.00 0.00 3.18
3357 7498 4.035091 CACCACTTTTCGTTGATCTTGTCA 59.965 41.667 0.00 0.00 34.25 3.58
3358 7499 4.035208 ACCACTTTTCGTTGATCTTGTCAC 59.965 41.667 0.00 0.00 36.32 3.67
3359 7500 4.273480 CCACTTTTCGTTGATCTTGTCACT 59.727 41.667 0.00 0.00 36.32 3.41
3360 7501 5.200454 CACTTTTCGTTGATCTTGTCACTG 58.800 41.667 0.00 0.00 36.32 3.66
3361 7502 3.878086 TTTCGTTGATCTTGTCACTGC 57.122 42.857 0.00 0.00 36.32 4.40
3362 7503 1.418373 TCGTTGATCTTGTCACTGCG 58.582 50.000 0.00 0.00 36.32 5.18
3363 7504 0.179240 CGTTGATCTTGTCACTGCGC 60.179 55.000 0.00 0.00 36.32 6.09
3364 7505 0.166814 GTTGATCTTGTCACTGCGCC 59.833 55.000 4.18 0.00 36.32 6.53
3365 7506 0.955428 TTGATCTTGTCACTGCGCCC 60.955 55.000 4.18 0.00 36.32 6.13
3366 7507 2.045926 ATCTTGTCACTGCGCCCC 60.046 61.111 4.18 0.00 0.00 5.80
3367 7508 2.803155 GATCTTGTCACTGCGCCCCA 62.803 60.000 4.18 0.00 0.00 4.96
3368 7509 3.357079 CTTGTCACTGCGCCCCAC 61.357 66.667 4.18 0.00 0.00 4.61
3369 7510 4.947147 TTGTCACTGCGCCCCACC 62.947 66.667 4.18 0.00 0.00 4.61
3382 7523 4.298261 CCACCACCACCCATGCCA 62.298 66.667 0.00 0.00 0.00 4.92
3383 7524 2.037687 CACCACCACCCATGCCAT 59.962 61.111 0.00 0.00 0.00 4.40
3384 7525 2.053865 CACCACCACCCATGCCATC 61.054 63.158 0.00 0.00 0.00 3.51
3385 7526 2.829914 CCACCACCCATGCCATCG 60.830 66.667 0.00 0.00 0.00 3.84
3386 7527 2.271821 CACCACCCATGCCATCGA 59.728 61.111 0.00 0.00 0.00 3.59
3387 7528 1.378382 CACCACCCATGCCATCGAA 60.378 57.895 0.00 0.00 0.00 3.71
3388 7529 1.077501 ACCACCCATGCCATCGAAG 60.078 57.895 0.00 0.00 0.00 3.79
3389 7530 1.825191 CCACCCATGCCATCGAAGG 60.825 63.158 1.31 1.31 0.00 3.46
3390 7531 1.224315 CACCCATGCCATCGAAGGA 59.776 57.895 11.67 0.00 0.00 3.36
3391 7532 0.816825 CACCCATGCCATCGAAGGAG 60.817 60.000 11.67 0.00 0.00 3.69
3392 7533 0.982852 ACCCATGCCATCGAAGGAGA 60.983 55.000 11.67 0.00 0.00 3.71
3393 7534 0.250209 CCCATGCCATCGAAGGAGAG 60.250 60.000 11.67 0.00 0.00 3.20
3394 7535 0.883814 CCATGCCATCGAAGGAGAGC 60.884 60.000 11.67 0.00 0.00 4.09
3395 7536 0.179065 CATGCCATCGAAGGAGAGCA 60.179 55.000 11.67 0.94 38.18 4.26
3396 7537 0.106335 ATGCCATCGAAGGAGAGCAG 59.894 55.000 11.67 0.00 37.50 4.24
3397 7538 1.227497 GCCATCGAAGGAGAGCAGG 60.227 63.158 11.67 0.00 0.00 4.85
3398 7539 1.227497 CCATCGAAGGAGAGCAGGC 60.227 63.158 0.00 0.00 0.00 4.85
3399 7540 1.227497 CATCGAAGGAGAGCAGGCC 60.227 63.158 0.00 0.00 0.00 5.19
3400 7541 2.439104 ATCGAAGGAGAGCAGGCCC 61.439 63.158 0.00 0.00 0.00 5.80
3401 7542 2.887738 ATCGAAGGAGAGCAGGCCCT 62.888 60.000 0.00 0.00 0.00 5.19
3402 7543 2.664081 CGAAGGAGAGCAGGCCCTT 61.664 63.158 0.00 0.00 42.53 3.95
3403 7544 1.330655 CGAAGGAGAGCAGGCCCTTA 61.331 60.000 0.00 0.00 40.14 2.69
3404 7545 0.467804 GAAGGAGAGCAGGCCCTTAG 59.532 60.000 0.00 0.00 40.14 2.18
3405 7546 0.252927 AAGGAGAGCAGGCCCTTAGT 60.253 55.000 0.00 0.00 38.43 2.24
3406 7547 0.689412 AGGAGAGCAGGCCCTTAGTC 60.689 60.000 0.00 0.00 0.00 2.59
3407 7548 1.691195 GGAGAGCAGGCCCTTAGTCC 61.691 65.000 0.00 0.00 0.00 3.85
3408 7549 2.022240 GAGAGCAGGCCCTTAGTCCG 62.022 65.000 0.00 0.00 0.00 4.79
3409 7550 2.038975 AGCAGGCCCTTAGTCCGA 59.961 61.111 0.00 0.00 0.00 4.55
3410 7551 2.187163 GCAGGCCCTTAGTCCGAC 59.813 66.667 0.00 0.00 0.00 4.79
3411 7552 2.656069 GCAGGCCCTTAGTCCGACA 61.656 63.158 0.00 0.00 0.00 4.35
3412 7553 1.218316 CAGGCCCTTAGTCCGACAC 59.782 63.158 0.00 0.00 0.00 3.67
3413 7554 1.988406 AGGCCCTTAGTCCGACACC 60.988 63.158 0.00 0.00 0.00 4.16
3414 7555 2.288025 GGCCCTTAGTCCGACACCA 61.288 63.158 0.40 0.00 0.00 4.17
3415 7556 1.079336 GCCCTTAGTCCGACACCAC 60.079 63.158 0.40 0.00 0.00 4.16
3416 7557 1.823169 GCCCTTAGTCCGACACCACA 61.823 60.000 0.40 0.00 0.00 4.17
3417 7558 0.037605 CCCTTAGTCCGACACCACAC 60.038 60.000 0.40 0.00 0.00 3.82
3418 7559 0.677288 CCTTAGTCCGACACCACACA 59.323 55.000 0.40 0.00 0.00 3.72
3419 7560 1.604693 CCTTAGTCCGACACCACACAC 60.605 57.143 0.40 0.00 0.00 3.82
3420 7561 0.031043 TTAGTCCGACACCACACACG 59.969 55.000 0.40 0.00 0.00 4.49
3421 7562 1.798234 TAGTCCGACACCACACACGG 61.798 60.000 0.40 0.00 45.61 4.94
3423 7564 2.355837 CCGACACCACACACGGAG 60.356 66.667 0.00 0.00 46.94 4.63
3424 7565 2.355837 CGACACCACACACGGAGG 60.356 66.667 0.00 0.00 0.00 4.30
3425 7566 2.030562 GACACCACACACGGAGGG 59.969 66.667 0.00 0.00 0.00 4.30
3426 7567 3.530910 GACACCACACACGGAGGGG 62.531 68.421 0.00 0.00 0.00 4.79
3437 7578 3.961414 GGAGGGGCCGGAACACAA 61.961 66.667 5.05 0.00 0.00 3.33
3438 7579 2.671963 GAGGGGCCGGAACACAAC 60.672 66.667 5.05 0.00 0.00 3.32
3439 7580 4.636435 AGGGGCCGGAACACAACG 62.636 66.667 5.05 0.00 0.00 4.10
3443 7584 4.322385 GCCGGAACACAACGCCAC 62.322 66.667 5.05 0.00 0.00 5.01
3444 7585 4.007940 CCGGAACACAACGCCACG 62.008 66.667 0.00 0.00 0.00 4.94
3445 7586 3.266376 CGGAACACAACGCCACGT 61.266 61.111 0.00 0.00 43.97 4.49
3446 7587 2.326550 GGAACACAACGCCACGTG 59.673 61.111 9.08 9.08 39.99 4.49
3447 7588 2.326550 GAACACAACGCCACGTGG 59.673 61.111 30.66 30.66 39.99 4.94
3448 7589 2.125065 AACACAACGCCACGTGGA 60.125 55.556 38.30 0.00 39.99 4.02
3449 7590 1.707239 GAACACAACGCCACGTGGAA 61.707 55.000 38.30 0.00 39.99 3.53
3450 7591 1.984321 AACACAACGCCACGTGGAAC 61.984 55.000 38.30 20.03 39.99 3.62
3451 7592 2.898343 ACAACGCCACGTGGAACC 60.898 61.111 38.30 19.26 39.99 3.62
3452 7593 2.897846 CAACGCCACGTGGAACCA 60.898 61.111 38.30 0.00 39.99 3.67
3453 7594 2.898343 AACGCCACGTGGAACCAC 60.898 61.111 38.30 18.48 39.99 4.16
3464 7605 4.629523 GAACCACGTCCCCGCCAA 62.630 66.667 0.00 0.00 37.70 4.52
3465 7606 4.941309 AACCACGTCCCCGCCAAC 62.941 66.667 0.00 0.00 37.70 3.77
3467 7608 3.697747 CCACGTCCCCGCCAACTA 61.698 66.667 0.00 0.00 37.70 2.24
3468 7609 2.125673 CACGTCCCCGCCAACTAG 60.126 66.667 0.00 0.00 37.70 2.57
3469 7610 2.283388 ACGTCCCCGCCAACTAGA 60.283 61.111 0.00 0.00 37.70 2.43
3470 7611 2.348888 ACGTCCCCGCCAACTAGAG 61.349 63.158 0.00 0.00 37.70 2.43
3471 7612 2.050350 CGTCCCCGCCAACTAGAGA 61.050 63.158 0.00 0.00 0.00 3.10
3472 7613 1.601419 CGTCCCCGCCAACTAGAGAA 61.601 60.000 0.00 0.00 0.00 2.87
3473 7614 0.175989 GTCCCCGCCAACTAGAGAAG 59.824 60.000 0.00 0.00 0.00 2.85
3474 7615 1.153349 CCCCGCCAACTAGAGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
3475 7616 1.153349 CCCGCCAACTAGAGAAGCC 60.153 63.158 0.00 0.00 0.00 4.35
3476 7617 1.153349 CCGCCAACTAGAGAAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
3477 7618 1.153349 CGCCAACTAGAGAAGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
3478 7619 1.899437 CGCCAACTAGAGAAGCCCCA 61.899 60.000 0.00 0.00 0.00 4.96
3479 7620 0.393132 GCCAACTAGAGAAGCCCCAC 60.393 60.000 0.00 0.00 0.00 4.61
3480 7621 1.280457 CCAACTAGAGAAGCCCCACT 58.720 55.000 0.00 0.00 0.00 4.00
3481 7622 1.208293 CCAACTAGAGAAGCCCCACTC 59.792 57.143 0.00 0.00 0.00 3.51
3482 7623 1.208293 CAACTAGAGAAGCCCCACTCC 59.792 57.143 0.00 0.00 34.13 3.85
3483 7624 0.413832 ACTAGAGAAGCCCCACTCCA 59.586 55.000 0.00 0.00 34.13 3.86
3484 7625 0.827368 CTAGAGAAGCCCCACTCCAC 59.173 60.000 0.00 0.00 34.13 4.02
3485 7626 0.617820 TAGAGAAGCCCCACTCCACC 60.618 60.000 0.00 0.00 34.13 4.61
3486 7627 1.920835 GAGAAGCCCCACTCCACCT 60.921 63.158 0.00 0.00 0.00 4.00
3487 7628 2.190488 GAGAAGCCCCACTCCACCTG 62.190 65.000 0.00 0.00 0.00 4.00
3488 7629 3.927481 GAAGCCCCACTCCACCTGC 62.927 68.421 0.00 0.00 0.00 4.85
3494 7635 4.007644 CACTCCACCTGCCGCAGA 62.008 66.667 22.35 0.63 32.44 4.26
3495 7636 3.241530 ACTCCACCTGCCGCAGAA 61.242 61.111 22.35 3.53 32.44 3.02
3496 7637 2.270205 CTCCACCTGCCGCAGAAT 59.730 61.111 22.35 6.62 32.44 2.40
3497 7638 2.046023 TCCACCTGCCGCAGAATG 60.046 61.111 22.35 17.75 40.87 2.67
3498 7639 2.046023 CCACCTGCCGCAGAATGA 60.046 61.111 22.35 0.00 39.69 2.57
3499 7640 2.401766 CCACCTGCCGCAGAATGAC 61.402 63.158 22.35 0.00 39.69 3.06
3500 7641 1.672030 CACCTGCCGCAGAATGACA 60.672 57.895 22.35 0.00 39.69 3.58
3501 7642 1.028330 CACCTGCCGCAGAATGACAT 61.028 55.000 22.35 0.00 39.69 3.06
3502 7643 0.322816 ACCTGCCGCAGAATGACATT 60.323 50.000 22.35 0.00 39.69 2.71
3503 7644 0.379669 CCTGCCGCAGAATGACATTC 59.620 55.000 22.35 18.71 39.69 2.67
3504 7645 1.089112 CTGCCGCAGAATGACATTCA 58.911 50.000 26.05 7.68 41.71 2.57
3505 7646 0.804364 TGCCGCAGAATGACATTCAC 59.196 50.000 26.05 17.58 41.71 3.18
3506 7647 0.099436 GCCGCAGAATGACATTCACC 59.901 55.000 26.05 16.27 41.71 4.02
3507 7648 1.452110 CCGCAGAATGACATTCACCA 58.548 50.000 26.05 0.00 41.71 4.17
3508 7649 1.131126 CCGCAGAATGACATTCACCAC 59.869 52.381 26.05 13.12 41.71 4.16
3509 7650 1.131126 CGCAGAATGACATTCACCACC 59.869 52.381 26.05 10.74 41.71 4.61
3510 7651 2.161855 GCAGAATGACATTCACCACCA 58.838 47.619 26.05 0.00 41.71 4.17
3511 7652 2.095059 GCAGAATGACATTCACCACCAC 60.095 50.000 26.05 7.00 41.71 4.16
3512 7653 2.489329 CAGAATGACATTCACCACCACC 59.511 50.000 26.05 0.93 41.71 4.61
3513 7654 1.468520 GAATGACATTCACCACCACCG 59.531 52.381 20.91 0.00 39.09 4.94
3514 7655 0.690192 ATGACATTCACCACCACCGA 59.310 50.000 0.00 0.00 0.00 4.69
3515 7656 0.250124 TGACATTCACCACCACCGAC 60.250 55.000 0.00 0.00 0.00 4.79
3516 7657 0.953960 GACATTCACCACCACCGACC 60.954 60.000 0.00 0.00 0.00 4.79
3517 7658 2.032634 CATTCACCACCACCGACCG 61.033 63.158 0.00 0.00 0.00 4.79
3518 7659 3.248446 ATTCACCACCACCGACCGG 62.248 63.158 6.94 6.94 42.03 5.28
3535 7676 4.643387 GGCCCAACCGTGCTCAGT 62.643 66.667 0.00 0.00 0.00 3.41
3536 7677 3.357079 GCCCAACCGTGCTCAGTG 61.357 66.667 0.00 0.00 0.00 3.66
3537 7678 3.357079 CCCAACCGTGCTCAGTGC 61.357 66.667 0.00 0.00 43.25 4.40
3546 7687 4.285851 GCTCAGTGCACCACTACC 57.714 61.111 14.63 0.00 43.43 3.18
3547 7688 1.738099 GCTCAGTGCACCACTACCG 60.738 63.158 14.63 0.00 43.43 4.02
3548 7689 1.738099 CTCAGTGCACCACTACCGC 60.738 63.158 14.63 0.00 43.43 5.68
3549 7690 2.742372 CAGTGCACCACTACCGCC 60.742 66.667 14.63 0.00 43.43 6.13
3550 7691 3.238497 AGTGCACCACTACCGCCA 61.238 61.111 14.63 0.00 43.46 5.69
3551 7692 3.047877 GTGCACCACTACCGCCAC 61.048 66.667 5.22 0.00 0.00 5.01
3552 7693 4.323477 TGCACCACTACCGCCACC 62.323 66.667 0.00 0.00 0.00 4.61
3554 7695 3.998672 CACCACTACCGCCACCGT 61.999 66.667 0.00 0.00 0.00 4.83
3555 7696 3.998672 ACCACTACCGCCACCGTG 61.999 66.667 0.00 0.00 0.00 4.94
3572 7713 3.909662 GCCGAGTGCACATCCATT 58.090 55.556 21.04 0.00 40.77 3.16
3573 7714 2.183409 GCCGAGTGCACATCCATTT 58.817 52.632 21.04 0.00 40.77 2.32
3574 7715 0.099436 GCCGAGTGCACATCCATTTC 59.901 55.000 21.04 4.70 40.77 2.17
3575 7716 1.742761 CCGAGTGCACATCCATTTCT 58.257 50.000 21.04 0.00 0.00 2.52
3576 7717 1.399440 CCGAGTGCACATCCATTTCTG 59.601 52.381 21.04 0.00 0.00 3.02
3577 7718 1.399440 CGAGTGCACATCCATTTCTGG 59.601 52.381 21.04 0.00 44.64 3.86
3578 7719 1.747355 GAGTGCACATCCATTTCTGGG 59.253 52.381 21.04 0.00 43.34 4.45
3579 7720 1.076024 AGTGCACATCCATTTCTGGGT 59.924 47.619 21.04 0.00 43.34 4.51
3580 7721 1.474077 GTGCACATCCATTTCTGGGTC 59.526 52.381 13.17 0.00 43.34 4.46
3581 7722 0.734889 GCACATCCATTTCTGGGTCG 59.265 55.000 0.00 0.00 43.34 4.79
3582 7723 1.950484 GCACATCCATTTCTGGGTCGT 60.950 52.381 0.00 0.00 43.34 4.34
3583 7724 2.679639 GCACATCCATTTCTGGGTCGTA 60.680 50.000 0.00 0.00 43.34 3.43
3584 7725 3.605634 CACATCCATTTCTGGGTCGTAA 58.394 45.455 0.00 0.00 43.34 3.18
3585 7726 3.374058 CACATCCATTTCTGGGTCGTAAC 59.626 47.826 0.00 0.00 43.34 2.50
3586 7727 3.008594 ACATCCATTTCTGGGTCGTAACA 59.991 43.478 0.00 0.00 43.34 2.41
3587 7728 3.048337 TCCATTTCTGGGTCGTAACAC 57.952 47.619 0.00 0.00 43.34 3.32
3588 7729 2.635915 TCCATTTCTGGGTCGTAACACT 59.364 45.455 0.00 0.00 43.34 3.55
3589 7730 2.742053 CCATTTCTGGGTCGTAACACTG 59.258 50.000 0.00 0.00 39.04 3.66
3590 7731 1.873698 TTTCTGGGTCGTAACACTGC 58.126 50.000 0.00 0.00 0.00 4.40
3591 7732 0.034337 TTCTGGGTCGTAACACTGCC 59.966 55.000 0.00 0.00 0.00 4.85
3592 7733 0.830444 TCTGGGTCGTAACACTGCCT 60.830 55.000 0.00 0.00 0.00 4.75
3593 7734 0.389948 CTGGGTCGTAACACTGCCTC 60.390 60.000 0.00 0.00 0.00 4.70
3594 7735 1.079336 GGGTCGTAACACTGCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
3595 7736 1.079336 GGTCGTAACACTGCCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
3596 7737 1.079336 GTCGTAACACTGCCTCCCC 60.079 63.158 0.00 0.00 0.00 4.81
3597 7738 2.125673 CGTAACACTGCCTCCCCG 60.126 66.667 0.00 0.00 0.00 5.73
3598 7739 2.939261 CGTAACACTGCCTCCCCGT 61.939 63.158 0.00 0.00 0.00 5.28
3599 7740 1.079336 GTAACACTGCCTCCCCGTC 60.079 63.158 0.00 0.00 0.00 4.79
3600 7741 2.288025 TAACACTGCCTCCCCGTCC 61.288 63.158 0.00 0.00 0.00 4.79
3601 7742 2.741878 TAACACTGCCTCCCCGTCCT 62.742 60.000 0.00 0.00 0.00 3.85
3602 7743 2.363795 CACTGCCTCCCCGTCCTA 60.364 66.667 0.00 0.00 0.00 2.94
3603 7744 2.363925 ACTGCCTCCCCGTCCTAC 60.364 66.667 0.00 0.00 0.00 3.18
3604 7745 2.363795 CTGCCTCCCCGTCCTACA 60.364 66.667 0.00 0.00 0.00 2.74
3605 7746 1.762460 CTGCCTCCCCGTCCTACAT 60.762 63.158 0.00 0.00 0.00 2.29
3606 7747 1.749334 CTGCCTCCCCGTCCTACATC 61.749 65.000 0.00 0.00 0.00 3.06
3607 7748 1.457831 GCCTCCCCGTCCTACATCT 60.458 63.158 0.00 0.00 0.00 2.90
3608 7749 1.465200 GCCTCCCCGTCCTACATCTC 61.465 65.000 0.00 0.00 0.00 2.75
3609 7750 0.106167 CCTCCCCGTCCTACATCTCA 60.106 60.000 0.00 0.00 0.00 3.27
3610 7751 1.481428 CCTCCCCGTCCTACATCTCAT 60.481 57.143 0.00 0.00 0.00 2.90
3611 7752 1.615883 CTCCCCGTCCTACATCTCATG 59.384 57.143 0.00 0.00 0.00 3.07
3612 7753 1.063190 TCCCCGTCCTACATCTCATGT 60.063 52.381 0.00 0.00 46.92 3.21
3613 7754 1.069204 CCCCGTCCTACATCTCATGTG 59.931 57.143 0.00 0.00 44.60 3.21
3614 7755 1.757118 CCCGTCCTACATCTCATGTGT 59.243 52.381 0.00 0.00 44.60 3.72
3615 7756 2.168521 CCCGTCCTACATCTCATGTGTT 59.831 50.000 0.00 0.00 44.60 3.32
3616 7757 3.448686 CCGTCCTACATCTCATGTGTTC 58.551 50.000 0.00 0.00 44.60 3.18
3617 7758 3.108881 CGTCCTACATCTCATGTGTTCG 58.891 50.000 0.00 0.00 44.60 3.95
3618 7759 2.860735 GTCCTACATCTCATGTGTTCGC 59.139 50.000 0.00 0.00 44.60 4.70
3619 7760 2.495669 TCCTACATCTCATGTGTTCGCA 59.504 45.455 0.00 0.00 44.60 5.10
3620 7761 2.604914 CCTACATCTCATGTGTTCGCAC 59.395 50.000 0.00 0.00 44.60 5.34
3628 7769 2.860293 GTGTTCGCACACCCATCG 59.140 61.111 7.12 0.00 46.84 3.84
3629 7770 3.047280 TGTTCGCACACCCATCGC 61.047 61.111 0.00 0.00 0.00 4.58
3630 7771 3.799755 GTTCGCACACCCATCGCC 61.800 66.667 0.00 0.00 0.00 5.54
3653 7794 4.489771 CCCCGCCAGATCCCACAC 62.490 72.222 0.00 0.00 0.00 3.82
3654 7795 4.489771 CCCGCCAGATCCCACACC 62.490 72.222 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.086522 GCATGACGGACTAAGAATACCTATTTA 58.913 37.037 0.00 0.00 0.00 1.40
277 283 4.500127 TGAAAGAAAGACGGATAATGCGA 58.500 39.130 0.00 0.00 34.49 5.10
323 329 7.713734 ATCCTGATTTGTTGAGATGTTCATT 57.286 32.000 0.00 0.00 35.27 2.57
336 342 7.729124 AATTTCATCTCCAATCCTGATTTGT 57.271 32.000 0.00 0.00 0.00 2.83
354 361 4.764823 ACGGGCAAGTGATCTTTAATTTCA 59.235 37.500 0.00 0.00 0.00 2.69
451 480 2.038387 ATTTGTAGCTACGGCCCAAG 57.962 50.000 18.74 0.00 39.73 3.61
492 521 6.946229 ATACCACGCGCTCTTAATTTATAG 57.054 37.500 5.73 0.00 0.00 1.31
508 539 5.878116 TGTAATGGGAGAAAAGAATACCACG 59.122 40.000 0.00 0.00 0.00 4.94
566 597 8.284435 ACCTACAGAACAAGTGTACCCTATATA 58.716 37.037 0.00 0.00 0.00 0.86
605 645 1.246649 TTGCAGCCAACCACTATGTG 58.753 50.000 0.00 0.00 0.00 3.21
737 779 5.576774 TGATGTGTAGTTCATGTGATCGAAC 59.423 40.000 0.00 3.74 41.48 3.95
740 782 5.970879 CATGATGTGTAGTTCATGTGATCG 58.029 41.667 5.04 0.00 42.67 3.69
758 813 2.889045 ACCGCGTACCTACATACATGAT 59.111 45.455 4.92 0.00 0.00 2.45
807 863 0.037697 AAGCTGGCGTTGTATCACGA 60.038 50.000 0.00 0.00 43.15 4.35
1004 1080 8.623903 GCAATGTCTCCATTCTAATATGTTCAA 58.376 33.333 0.00 0.00 39.28 2.69
1071 1147 4.196626 TGTACCTCCAACCGAAAGTATG 57.803 45.455 0.00 0.00 0.00 2.39
1072 1148 4.895668 TTGTACCTCCAACCGAAAGTAT 57.104 40.909 0.00 0.00 0.00 2.12
1077 1153 1.349688 AGCATTGTACCTCCAACCGAA 59.650 47.619 0.00 0.00 0.00 4.30
1121 1197 2.224670 ACGGGTTTCCAAAGATGCAGTA 60.225 45.455 0.00 0.00 0.00 2.74
1198 1280 2.951642 TGCTGCCTACCAAGAATATTGC 59.048 45.455 0.00 0.00 0.00 3.56
1329 1413 0.181824 AGAGGACTCGTCTCCCTAGC 59.818 60.000 0.00 0.00 34.09 3.42
1395 1483 3.379240 CATGCAAGTAGATCTCTCCACG 58.621 50.000 0.00 0.00 0.00 4.94
1465 1553 9.620259 GGGAGATAAAGTAGTTTGAAGATTCAT 57.380 33.333 5.77 0.00 37.00 2.57
1481 1569 3.869065 TGGCACGTTTAGGGAGATAAAG 58.131 45.455 0.00 0.00 0.00 1.85
1516 1605 7.147976 ACAAATTAAAGCTGACAATGAAGACC 58.852 34.615 0.00 0.00 0.00 3.85
1593 1688 6.079712 AGTGGATGCTAACTAGGGAAAAAT 57.920 37.500 0.00 0.00 0.00 1.82
1619 1719 4.159135 ACGGTGGTACTGGTAACTTCATAG 59.841 45.833 0.00 0.00 37.61 2.23
1703 2481 9.421806 CAACTAATTAAAAGCATGGTGAATGAA 57.578 29.630 0.00 0.00 38.72 2.57
1709 2487 9.853555 TTACATCAACTAATTAAAAGCATGGTG 57.146 29.630 0.00 6.41 0.00 4.17
1725 2503 5.494724 AGATGCACACTGATTACATCAACT 58.505 37.500 0.00 0.00 39.64 3.16
1939 2736 5.885230 TCATAACCTTTGACTGCATGAAG 57.115 39.130 0.00 0.00 0.00 3.02
2056 2853 2.422519 CCATCCTAGCTTCCATGCACTT 60.423 50.000 0.00 0.00 34.99 3.16
2059 2856 0.475475 CCCATCCTAGCTTCCATGCA 59.525 55.000 0.00 0.00 34.99 3.96
2306 3110 6.064060 CCATGAGTTCAAGCTATATTTCCCA 58.936 40.000 0.00 0.00 0.00 4.37
2347 3151 2.138542 ACATTGGAGGATATGCTGGGT 58.861 47.619 0.00 0.00 0.00 4.51
2813 3623 4.058124 GGATGTTGGTTTCTTTTTGCTCC 58.942 43.478 0.00 0.00 0.00 4.70
2984 3796 5.095490 GTGCTAAGAATGCATACCACAAAC 58.905 41.667 0.00 0.00 42.69 2.93
3000 3812 7.096065 GCCAAACTTGTATTTTTCTGTGCTAAG 60.096 37.037 0.00 0.00 0.00 2.18
3014 3826 4.666512 AGACAATGAGGCCAAACTTGTAT 58.333 39.130 5.01 3.62 30.63 2.29
3018 3830 2.036346 GCAAGACAATGAGGCCAAACTT 59.964 45.455 5.01 0.00 0.00 2.66
3119 5311 4.997395 CAGAGCCTAAGAAGCTTTTGTACA 59.003 41.667 0.00 0.00 41.75 2.90
3171 7312 5.084818 TCACGAGGACATGTGTAAATCAT 57.915 39.130 1.15 0.00 37.38 2.45
3172 7313 4.529109 TCACGAGGACATGTGTAAATCA 57.471 40.909 1.15 0.00 37.38 2.57
3223 7364 0.249657 GCTCGGATTCTGCCTGTAGG 60.250 60.000 0.00 0.00 38.53 3.18
3253 7394 0.811281 GGGTGGTGTGAGCTTATTGC 59.189 55.000 0.00 0.00 43.29 3.56
3261 7402 3.132029 TTGCCAGGGGTGGTGTGAG 62.132 63.158 0.00 0.00 0.00 3.51
3262 7403 3.099841 TTGCCAGGGGTGGTGTGA 61.100 61.111 0.00 0.00 0.00 3.58
3263 7404 2.598394 CTTGCCAGGGGTGGTGTG 60.598 66.667 0.00 0.00 0.00 3.82
3264 7405 4.603535 GCTTGCCAGGGGTGGTGT 62.604 66.667 0.00 0.00 0.00 4.16
3265 7406 4.601794 TGCTTGCCAGGGGTGGTG 62.602 66.667 0.00 0.00 0.00 4.17
3266 7407 3.164610 ATTGCTTGCCAGGGGTGGT 62.165 57.895 0.00 0.00 0.00 4.16
3267 7408 2.284112 ATTGCTTGCCAGGGGTGG 60.284 61.111 0.00 0.00 0.00 4.61
3268 7409 2.652095 CCATTGCTTGCCAGGGGTG 61.652 63.158 0.00 0.00 0.00 4.61
3269 7410 2.284112 CCATTGCTTGCCAGGGGT 60.284 61.111 0.00 0.00 0.00 4.95
3270 7411 3.777910 GCCATTGCTTGCCAGGGG 61.778 66.667 0.00 0.00 33.53 4.79
3271 7412 2.515996 CTTGCCATTGCTTGCCAGGG 62.516 60.000 0.00 0.00 38.71 4.45
3272 7413 1.079405 CTTGCCATTGCTTGCCAGG 60.079 57.895 0.00 0.00 38.71 4.45
3273 7414 1.740296 GCTTGCCATTGCTTGCCAG 60.740 57.895 0.00 0.00 38.71 4.85
3274 7415 2.344500 GCTTGCCATTGCTTGCCA 59.656 55.556 0.00 0.00 38.71 4.92
3275 7416 2.435410 GGCTTGCCATTGCTTGCC 60.435 61.111 6.79 9.12 44.48 4.52
3276 7417 2.030958 GTGGCTTGCCATTGCTTGC 61.031 57.895 17.86 0.00 38.71 4.01
3277 7418 1.375013 GGTGGCTTGCCATTGCTTG 60.375 57.895 17.86 0.00 38.71 4.01
3278 7419 2.934570 CGGTGGCTTGCCATTGCTT 61.935 57.895 17.86 0.00 38.71 3.91
3279 7420 3.376078 CGGTGGCTTGCCATTGCT 61.376 61.111 17.86 0.00 38.71 3.91
3287 7428 2.572095 TAGACGATGGCGGTGGCTTG 62.572 60.000 0.00 0.00 43.17 4.01
3288 7429 2.355986 TAGACGATGGCGGTGGCTT 61.356 57.895 0.00 0.00 43.17 4.35
3289 7430 2.758327 TAGACGATGGCGGTGGCT 60.758 61.111 0.00 0.00 43.17 4.75
3290 7431 2.585247 GTAGACGATGGCGGTGGC 60.585 66.667 0.00 0.00 43.17 5.01
3291 7432 0.806102 CTTGTAGACGATGGCGGTGG 60.806 60.000 0.00 0.00 43.17 4.61
3292 7433 0.172578 TCTTGTAGACGATGGCGGTG 59.827 55.000 0.00 0.00 43.17 4.94
3293 7434 0.456221 CTCTTGTAGACGATGGCGGT 59.544 55.000 0.00 0.00 43.17 5.68
3294 7435 0.249073 CCTCTTGTAGACGATGGCGG 60.249 60.000 0.00 0.00 43.17 6.13
3295 7436 0.456221 ACCTCTTGTAGACGATGGCG 59.544 55.000 0.00 0.00 44.79 5.69
3296 7437 1.202428 GGACCTCTTGTAGACGATGGC 60.202 57.143 0.00 0.00 0.00 4.40
3297 7438 1.409427 GGGACCTCTTGTAGACGATGG 59.591 57.143 0.00 0.00 0.00 3.51
3298 7439 2.873133 GGGACCTCTTGTAGACGATG 57.127 55.000 0.00 0.00 0.00 3.84
3322 7463 4.814294 GTGGTGTAGGCGAGGCGG 62.814 72.222 0.00 0.00 0.00 6.13
3323 7464 2.781595 AAAGTGGTGTAGGCGAGGCG 62.782 60.000 0.00 0.00 0.00 5.52
3324 7465 0.605589 AAAAGTGGTGTAGGCGAGGC 60.606 55.000 0.00 0.00 0.00 4.70
3325 7466 1.439679 GAAAAGTGGTGTAGGCGAGG 58.560 55.000 0.00 0.00 0.00 4.63
3326 7467 1.068474 CGAAAAGTGGTGTAGGCGAG 58.932 55.000 0.00 0.00 0.00 5.03
3327 7468 0.390124 ACGAAAAGTGGTGTAGGCGA 59.610 50.000 0.00 0.00 0.00 5.54
3328 7469 1.070175 CAACGAAAAGTGGTGTAGGCG 60.070 52.381 0.00 0.00 0.00 5.52
3329 7470 2.215196 TCAACGAAAAGTGGTGTAGGC 58.785 47.619 0.00 0.00 0.00 3.93
3330 7471 4.315803 AGATCAACGAAAAGTGGTGTAGG 58.684 43.478 0.00 0.00 0.00 3.18
3331 7472 5.236478 ACAAGATCAACGAAAAGTGGTGTAG 59.764 40.000 0.00 0.00 0.00 2.74
3332 7473 5.120399 ACAAGATCAACGAAAAGTGGTGTA 58.880 37.500 0.00 0.00 0.00 2.90
3333 7474 3.945285 ACAAGATCAACGAAAAGTGGTGT 59.055 39.130 0.00 0.00 0.00 4.16
3334 7475 4.035091 TGACAAGATCAACGAAAAGTGGTG 59.965 41.667 0.00 0.00 33.02 4.17
3335 7476 4.035208 GTGACAAGATCAACGAAAAGTGGT 59.965 41.667 0.00 0.00 39.72 4.16
3336 7477 4.273480 AGTGACAAGATCAACGAAAAGTGG 59.727 41.667 0.00 0.00 39.72 4.00
3337 7478 5.200454 CAGTGACAAGATCAACGAAAAGTG 58.800 41.667 0.00 0.00 39.72 3.16
3338 7479 4.260784 GCAGTGACAAGATCAACGAAAAGT 60.261 41.667 0.00 0.00 39.72 2.66
3339 7480 4.214437 GCAGTGACAAGATCAACGAAAAG 58.786 43.478 0.00 0.00 39.72 2.27
3340 7481 3.303066 CGCAGTGACAAGATCAACGAAAA 60.303 43.478 0.00 0.00 39.72 2.29
3341 7482 2.220824 CGCAGTGACAAGATCAACGAAA 59.779 45.455 0.00 0.00 39.72 3.46
3342 7483 1.792367 CGCAGTGACAAGATCAACGAA 59.208 47.619 0.00 0.00 39.72 3.85
3343 7484 1.418373 CGCAGTGACAAGATCAACGA 58.582 50.000 0.00 0.00 39.72 3.85
3344 7485 0.179240 GCGCAGTGACAAGATCAACG 60.179 55.000 0.30 0.00 39.72 4.10
3345 7486 0.166814 GGCGCAGTGACAAGATCAAC 59.833 55.000 10.83 0.00 39.72 3.18
3346 7487 0.955428 GGGCGCAGTGACAAGATCAA 60.955 55.000 10.83 0.00 39.72 2.57
3347 7488 1.375908 GGGCGCAGTGACAAGATCA 60.376 57.895 10.83 0.00 33.79 2.92
3348 7489 2.109126 GGGGCGCAGTGACAAGATC 61.109 63.158 10.83 0.00 0.00 2.75
3349 7490 2.045926 GGGGCGCAGTGACAAGAT 60.046 61.111 10.83 0.00 0.00 2.40
3350 7491 3.555324 TGGGGCGCAGTGACAAGA 61.555 61.111 10.83 0.00 0.00 3.02
3351 7492 3.357079 GTGGGGCGCAGTGACAAG 61.357 66.667 10.83 0.00 0.00 3.16
3352 7493 4.947147 GGTGGGGCGCAGTGACAA 62.947 66.667 10.83 0.00 0.00 3.18
3365 7506 3.605412 ATGGCATGGGTGGTGGTGG 62.605 63.158 0.00 0.00 0.00 4.61
3366 7507 2.037687 ATGGCATGGGTGGTGGTG 59.962 61.111 0.00 0.00 0.00 4.17
3367 7508 2.360191 GATGGCATGGGTGGTGGT 59.640 61.111 3.81 0.00 0.00 4.16
3368 7509 2.829914 CGATGGCATGGGTGGTGG 60.830 66.667 3.81 0.00 0.00 4.61
3369 7510 1.378382 TTCGATGGCATGGGTGGTG 60.378 57.895 3.81 0.00 0.00 4.17
3370 7511 1.077501 CTTCGATGGCATGGGTGGT 60.078 57.895 3.81 0.00 0.00 4.16
3371 7512 1.825191 CCTTCGATGGCATGGGTGG 60.825 63.158 3.81 6.01 0.00 4.61
3372 7513 0.816825 CTCCTTCGATGGCATGGGTG 60.817 60.000 3.81 0.06 0.00 4.61
3373 7514 0.982852 TCTCCTTCGATGGCATGGGT 60.983 55.000 3.81 0.00 0.00 4.51
3374 7515 0.250209 CTCTCCTTCGATGGCATGGG 60.250 60.000 3.81 1.77 0.00 4.00
3375 7516 0.883814 GCTCTCCTTCGATGGCATGG 60.884 60.000 3.81 3.19 0.00 3.66
3376 7517 0.179065 TGCTCTCCTTCGATGGCATG 60.179 55.000 3.81 5.66 0.00 4.06
3377 7518 0.106335 CTGCTCTCCTTCGATGGCAT 59.894 55.000 12.42 0.00 0.00 4.40
3378 7519 1.519246 CTGCTCTCCTTCGATGGCA 59.481 57.895 12.42 6.19 0.00 4.92
3379 7520 1.227497 CCTGCTCTCCTTCGATGGC 60.227 63.158 12.42 1.76 0.00 4.40
3380 7521 1.227497 GCCTGCTCTCCTTCGATGG 60.227 63.158 11.07 11.07 0.00 3.51
3381 7522 1.227497 GGCCTGCTCTCCTTCGATG 60.227 63.158 0.00 0.00 0.00 3.84
3382 7523 2.439104 GGGCCTGCTCTCCTTCGAT 61.439 63.158 0.84 0.00 0.00 3.59
3383 7524 3.077556 GGGCCTGCTCTCCTTCGA 61.078 66.667 0.84 0.00 0.00 3.71
3384 7525 1.330655 TAAGGGCCTGCTCTCCTTCG 61.331 60.000 6.92 0.00 40.86 3.79
3385 7526 0.467804 CTAAGGGCCTGCTCTCCTTC 59.532 60.000 6.92 0.00 40.86 3.46
3386 7527 0.252927 ACTAAGGGCCTGCTCTCCTT 60.253 55.000 6.92 0.00 42.79 3.36
3387 7528 0.689412 GACTAAGGGCCTGCTCTCCT 60.689 60.000 6.92 0.00 0.00 3.69
3388 7529 1.691195 GGACTAAGGGCCTGCTCTCC 61.691 65.000 6.92 5.37 0.00 3.71
3389 7530 1.826709 GGACTAAGGGCCTGCTCTC 59.173 63.158 6.92 0.00 0.00 3.20
3390 7531 2.060980 CGGACTAAGGGCCTGCTCT 61.061 63.158 6.92 0.00 0.00 4.09
3391 7532 2.058595 TCGGACTAAGGGCCTGCTC 61.059 63.158 6.92 1.28 0.00 4.26
3392 7533 2.038975 TCGGACTAAGGGCCTGCT 59.961 61.111 6.92 0.00 0.00 4.24
3393 7534 2.187163 GTCGGACTAAGGGCCTGC 59.813 66.667 6.92 0.00 0.00 4.85
3394 7535 1.218316 GTGTCGGACTAAGGGCCTG 59.782 63.158 6.92 0.00 0.00 4.85
3395 7536 1.988406 GGTGTCGGACTAAGGGCCT 60.988 63.158 0.00 0.00 0.00 5.19
3396 7537 2.288025 TGGTGTCGGACTAAGGGCC 61.288 63.158 9.88 0.00 0.00 5.80
3397 7538 1.079336 GTGGTGTCGGACTAAGGGC 60.079 63.158 9.88 0.00 0.00 5.19
3398 7539 0.037605 GTGTGGTGTCGGACTAAGGG 60.038 60.000 9.88 0.00 0.00 3.95
3399 7540 0.677288 TGTGTGGTGTCGGACTAAGG 59.323 55.000 9.88 0.00 0.00 2.69
3400 7541 1.779569 GTGTGTGGTGTCGGACTAAG 58.220 55.000 9.88 0.00 0.00 2.18
3401 7542 0.031043 CGTGTGTGGTGTCGGACTAA 59.969 55.000 9.88 0.00 0.00 2.24
3402 7543 1.655885 CGTGTGTGGTGTCGGACTA 59.344 57.895 9.88 0.00 0.00 2.59
3403 7544 2.415843 CGTGTGTGGTGTCGGACT 59.584 61.111 9.88 0.00 0.00 3.85
3404 7545 2.660552 CCGTGTGTGGTGTCGGAC 60.661 66.667 0.00 0.00 44.86 4.79
3406 7547 2.355837 CTCCGTGTGTGGTGTCGG 60.356 66.667 0.00 0.00 43.65 4.79
3407 7548 2.355837 CCTCCGTGTGTGGTGTCG 60.356 66.667 0.00 0.00 0.00 4.35
3408 7549 2.030562 CCCTCCGTGTGTGGTGTC 59.969 66.667 0.00 0.00 0.00 3.67
3409 7550 3.556306 CCCCTCCGTGTGTGGTGT 61.556 66.667 0.00 0.00 0.00 4.16
3420 7561 3.961414 TTGTGTTCCGGCCCCTCC 61.961 66.667 0.00 0.00 0.00 4.30
3421 7562 2.671963 GTTGTGTTCCGGCCCCTC 60.672 66.667 0.00 0.00 0.00 4.30
3422 7563 4.636435 CGTTGTGTTCCGGCCCCT 62.636 66.667 0.00 0.00 0.00 4.79
3427 7568 4.007940 CGTGGCGTTGTGTTCCGG 62.008 66.667 0.00 0.00 0.00 5.14
3428 7569 3.266376 ACGTGGCGTTGTGTTCCG 61.266 61.111 0.00 0.00 36.35 4.30
3429 7570 2.326550 CACGTGGCGTTGTGTTCC 59.673 61.111 7.95 0.00 38.32 3.62
3430 7571 1.707239 TTCCACGTGGCGTTGTGTTC 61.707 55.000 30.25 0.00 38.32 3.18
3431 7572 1.745864 TTCCACGTGGCGTTGTGTT 60.746 52.632 30.25 0.00 38.32 3.32
3432 7573 2.125065 TTCCACGTGGCGTTGTGT 60.125 55.556 30.25 0.00 38.32 3.72
3433 7574 2.326550 GTTCCACGTGGCGTTGTG 59.673 61.111 30.25 4.40 38.32 3.33
3434 7575 2.898343 GGTTCCACGTGGCGTTGT 60.898 61.111 30.25 0.00 38.32 3.32
3435 7576 2.897846 TGGTTCCACGTGGCGTTG 60.898 61.111 30.25 6.02 38.32 4.10
3436 7577 2.898343 GTGGTTCCACGTGGCGTT 60.898 61.111 30.25 0.00 38.32 4.84
3454 7595 0.175989 CTTCTCTAGTTGGCGGGGAC 59.824 60.000 0.00 0.00 0.00 4.46
3455 7596 1.614241 GCTTCTCTAGTTGGCGGGGA 61.614 60.000 0.00 0.00 0.00 4.81
3456 7597 1.153349 GCTTCTCTAGTTGGCGGGG 60.153 63.158 0.00 0.00 0.00 5.73
3457 7598 1.153349 GGCTTCTCTAGTTGGCGGG 60.153 63.158 0.00 0.00 0.00 6.13
3458 7599 1.153349 GGGCTTCTCTAGTTGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
3459 7600 1.153349 GGGGCTTCTCTAGTTGGCG 60.153 63.158 0.00 0.00 0.00 5.69
3460 7601 0.393132 GTGGGGCTTCTCTAGTTGGC 60.393 60.000 0.00 0.00 0.00 4.52
3461 7602 1.208293 GAGTGGGGCTTCTCTAGTTGG 59.792 57.143 0.00 0.00 0.00 3.77
3462 7603 1.208293 GGAGTGGGGCTTCTCTAGTTG 59.792 57.143 0.00 0.00 0.00 3.16
3463 7604 1.203313 TGGAGTGGGGCTTCTCTAGTT 60.203 52.381 0.00 0.00 0.00 2.24
3464 7605 0.413832 TGGAGTGGGGCTTCTCTAGT 59.586 55.000 0.00 0.00 0.00 2.57
3465 7606 0.827368 GTGGAGTGGGGCTTCTCTAG 59.173 60.000 0.00 0.00 0.00 2.43
3466 7607 0.617820 GGTGGAGTGGGGCTTCTCTA 60.618 60.000 0.00 0.00 0.00 2.43
3467 7608 1.920835 GGTGGAGTGGGGCTTCTCT 60.921 63.158 0.00 0.00 0.00 3.10
3468 7609 1.920835 AGGTGGAGTGGGGCTTCTC 60.921 63.158 0.00 0.00 0.00 2.87
3469 7610 2.208349 AGGTGGAGTGGGGCTTCT 59.792 61.111 0.00 0.00 0.00 2.85
3470 7611 2.352805 CAGGTGGAGTGGGGCTTC 59.647 66.667 0.00 0.00 0.00 3.86
3471 7612 3.971702 GCAGGTGGAGTGGGGCTT 61.972 66.667 0.00 0.00 0.00 4.35
3477 7618 2.809861 ATTCTGCGGCAGGTGGAGTG 62.810 60.000 28.18 2.62 31.51 3.51
3478 7619 2.596851 ATTCTGCGGCAGGTGGAGT 61.597 57.895 28.18 4.69 31.51 3.85
3479 7620 2.110967 CATTCTGCGGCAGGTGGAG 61.111 63.158 28.18 11.40 31.51 3.86
3480 7621 2.046023 CATTCTGCGGCAGGTGGA 60.046 61.111 28.18 13.25 31.51 4.02
3481 7622 2.046023 TCATTCTGCGGCAGGTGG 60.046 61.111 28.18 17.43 31.51 4.61
3482 7623 1.028330 ATGTCATTCTGCGGCAGGTG 61.028 55.000 28.18 24.64 31.51 4.00
3483 7624 0.322816 AATGTCATTCTGCGGCAGGT 60.323 50.000 28.18 15.45 31.51 4.00
3484 7625 0.379669 GAATGTCATTCTGCGGCAGG 59.620 55.000 28.18 13.65 36.37 4.85
3485 7626 1.089112 TGAATGTCATTCTGCGGCAG 58.911 50.000 23.72 23.72 39.96 4.85
3486 7627 0.804364 GTGAATGTCATTCTGCGGCA 59.196 50.000 22.89 1.29 39.96 5.69
3487 7628 0.099436 GGTGAATGTCATTCTGCGGC 59.901 55.000 22.89 10.18 39.96 6.53
3488 7629 1.131126 GTGGTGAATGTCATTCTGCGG 59.869 52.381 22.89 0.00 39.96 5.69
3489 7630 1.131126 GGTGGTGAATGTCATTCTGCG 59.869 52.381 22.89 0.00 39.96 5.18
3490 7631 2.095059 GTGGTGGTGAATGTCATTCTGC 60.095 50.000 22.89 16.09 39.96 4.26
3491 7632 2.489329 GGTGGTGGTGAATGTCATTCTG 59.511 50.000 22.89 0.00 39.96 3.02
3492 7633 2.795329 GGTGGTGGTGAATGTCATTCT 58.205 47.619 22.89 0.00 39.96 2.40
3493 7634 1.468520 CGGTGGTGGTGAATGTCATTC 59.531 52.381 17.21 17.21 39.70 2.67
3494 7635 1.073125 TCGGTGGTGGTGAATGTCATT 59.927 47.619 0.00 0.00 0.00 2.57
3495 7636 0.690192 TCGGTGGTGGTGAATGTCAT 59.310 50.000 0.00 0.00 0.00 3.06
3496 7637 0.250124 GTCGGTGGTGGTGAATGTCA 60.250 55.000 0.00 0.00 0.00 3.58
3497 7638 0.953960 GGTCGGTGGTGGTGAATGTC 60.954 60.000 0.00 0.00 0.00 3.06
3498 7639 1.072505 GGTCGGTGGTGGTGAATGT 59.927 57.895 0.00 0.00 0.00 2.71
3499 7640 2.032634 CGGTCGGTGGTGGTGAATG 61.033 63.158 0.00 0.00 0.00 2.67
3500 7641 2.345991 CGGTCGGTGGTGGTGAAT 59.654 61.111 0.00 0.00 0.00 2.57
3501 7642 3.931247 CCGGTCGGTGGTGGTGAA 61.931 66.667 0.55 0.00 0.00 3.18
3518 7659 4.643387 ACTGAGCACGGTTGGGCC 62.643 66.667 0.00 0.00 30.63 5.80
3519 7660 3.357079 CACTGAGCACGGTTGGGC 61.357 66.667 0.00 0.00 32.77 5.36
3520 7661 3.357079 GCACTGAGCACGGTTGGG 61.357 66.667 0.00 0.00 44.79 4.12
3529 7670 1.738099 CGGTAGTGGTGCACTGAGC 60.738 63.158 17.98 8.19 45.01 4.26
3530 7671 1.738099 GCGGTAGTGGTGCACTGAG 60.738 63.158 17.98 2.99 45.01 3.35
3531 7672 2.342279 GCGGTAGTGGTGCACTGA 59.658 61.111 17.98 0.26 45.01 3.41
3532 7673 2.742372 GGCGGTAGTGGTGCACTG 60.742 66.667 17.98 0.00 45.01 3.66
3534 7675 3.047877 GTGGCGGTAGTGGTGCAC 61.048 66.667 8.80 8.80 34.10 4.57
3535 7676 4.323477 GGTGGCGGTAGTGGTGCA 62.323 66.667 0.00 0.00 0.00 4.57
3537 7678 3.998672 ACGGTGGCGGTAGTGGTG 61.999 66.667 0.00 0.00 0.00 4.17
3538 7679 3.998672 CACGGTGGCGGTAGTGGT 61.999 66.667 0.00 0.00 0.00 4.16
3555 7696 0.099436 GAAATGGATGTGCACTCGGC 59.901 55.000 19.41 4.41 45.13 5.54
3556 7697 1.399440 CAGAAATGGATGTGCACTCGG 59.601 52.381 19.41 2.02 0.00 4.63
3557 7698 1.399440 CCAGAAATGGATGTGCACTCG 59.601 52.381 19.41 2.27 0.00 4.18
3558 7699 1.747355 CCCAGAAATGGATGTGCACTC 59.253 52.381 19.41 12.55 0.00 3.51
3559 7700 1.076024 ACCCAGAAATGGATGTGCACT 59.924 47.619 19.41 3.19 0.00 4.40
3560 7701 1.474077 GACCCAGAAATGGATGTGCAC 59.526 52.381 10.75 10.75 0.00 4.57
3561 7702 1.838112 GACCCAGAAATGGATGTGCA 58.162 50.000 0.00 0.00 0.00 4.57
3562 7703 0.734889 CGACCCAGAAATGGATGTGC 59.265 55.000 0.00 0.00 0.00 4.57
3563 7704 2.113860 ACGACCCAGAAATGGATGTG 57.886 50.000 0.00 0.00 0.00 3.21
3564 7705 3.008594 TGTTACGACCCAGAAATGGATGT 59.991 43.478 0.00 0.00 0.00 3.06
3565 7706 3.374058 GTGTTACGACCCAGAAATGGATG 59.626 47.826 0.00 0.00 0.00 3.51
3566 7707 3.263425 AGTGTTACGACCCAGAAATGGAT 59.737 43.478 0.00 0.00 0.00 3.41
3567 7708 2.635915 AGTGTTACGACCCAGAAATGGA 59.364 45.455 0.00 0.00 0.00 3.41
3568 7709 2.742053 CAGTGTTACGACCCAGAAATGG 59.258 50.000 0.00 0.00 0.00 3.16
3569 7710 2.159627 GCAGTGTTACGACCCAGAAATG 59.840 50.000 0.00 0.00 0.00 2.32
3570 7711 2.423577 GCAGTGTTACGACCCAGAAAT 58.576 47.619 0.00 0.00 0.00 2.17
3571 7712 1.541670 GGCAGTGTTACGACCCAGAAA 60.542 52.381 0.00 0.00 0.00 2.52
3572 7713 0.034337 GGCAGTGTTACGACCCAGAA 59.966 55.000 0.00 0.00 0.00 3.02
3573 7714 0.830444 AGGCAGTGTTACGACCCAGA 60.830 55.000 0.00 0.00 0.00 3.86
3574 7715 0.389948 GAGGCAGTGTTACGACCCAG 60.390 60.000 0.00 0.00 0.00 4.45
3575 7716 1.669440 GAGGCAGTGTTACGACCCA 59.331 57.895 0.00 0.00 0.00 4.51
3576 7717 1.079336 GGAGGCAGTGTTACGACCC 60.079 63.158 0.00 0.00 0.00 4.46
3577 7718 1.079336 GGGAGGCAGTGTTACGACC 60.079 63.158 0.00 0.00 0.00 4.79
3578 7719 1.079336 GGGGAGGCAGTGTTACGAC 60.079 63.158 0.00 0.00 0.00 4.34
3579 7720 2.642254 CGGGGAGGCAGTGTTACGA 61.642 63.158 0.00 0.00 0.00 3.43
3580 7721 2.125673 CGGGGAGGCAGTGTTACG 60.126 66.667 0.00 0.00 0.00 3.18
3581 7722 1.079336 GACGGGGAGGCAGTGTTAC 60.079 63.158 0.00 0.00 0.00 2.50
3582 7723 2.288025 GGACGGGGAGGCAGTGTTA 61.288 63.158 0.00 0.00 0.00 2.41
3583 7724 2.741878 TAGGACGGGGAGGCAGTGTT 62.742 60.000 0.00 0.00 0.00 3.32
3584 7725 3.233919 TAGGACGGGGAGGCAGTGT 62.234 63.158 0.00 0.00 0.00 3.55
3585 7726 2.363795 TAGGACGGGGAGGCAGTG 60.364 66.667 0.00 0.00 0.00 3.66
3586 7727 2.363925 GTAGGACGGGGAGGCAGT 60.364 66.667 0.00 0.00 0.00 4.40
3587 7728 1.749334 GATGTAGGACGGGGAGGCAG 61.749 65.000 0.00 0.00 0.00 4.85
3588 7729 1.760875 GATGTAGGACGGGGAGGCA 60.761 63.158 0.00 0.00 0.00 4.75
3589 7730 1.457831 AGATGTAGGACGGGGAGGC 60.458 63.158 0.00 0.00 0.00 4.70
3590 7731 0.106167 TGAGATGTAGGACGGGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
3591 7732 1.615883 CATGAGATGTAGGACGGGGAG 59.384 57.143 0.00 0.00 0.00 4.30
3592 7733 1.063190 ACATGAGATGTAGGACGGGGA 60.063 52.381 0.00 0.00 42.78 4.81
3593 7734 1.069204 CACATGAGATGTAGGACGGGG 59.931 57.143 0.00 0.00 42.70 5.73
3594 7735 1.757118 ACACATGAGATGTAGGACGGG 59.243 52.381 0.00 0.00 42.70 5.28
3595 7736 3.448686 GAACACATGAGATGTAGGACGG 58.551 50.000 0.00 0.00 42.70 4.79
3596 7737 3.108881 CGAACACATGAGATGTAGGACG 58.891 50.000 0.00 0.00 42.70 4.79
3597 7738 2.860735 GCGAACACATGAGATGTAGGAC 59.139 50.000 0.00 0.00 42.70 3.85
3598 7739 2.495669 TGCGAACACATGAGATGTAGGA 59.504 45.455 0.00 0.00 42.70 2.94
3599 7740 2.604914 GTGCGAACACATGAGATGTAGG 59.395 50.000 0.00 0.00 46.61 3.18
3600 7741 3.914555 GTGCGAACACATGAGATGTAG 57.085 47.619 0.00 0.00 46.61 2.74
3612 7753 3.047280 GCGATGGGTGTGCGAACA 61.047 61.111 0.00 0.00 0.00 3.18
3613 7754 3.799755 GGCGATGGGTGTGCGAAC 61.800 66.667 0.00 0.00 0.00 3.95
3636 7777 4.489771 GTGTGGGATCTGGCGGGG 62.490 72.222 0.00 0.00 0.00 5.73
3637 7778 4.489771 GGTGTGGGATCTGGCGGG 62.490 72.222 0.00 0.00 0.00 6.13



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.