AutoCloner

Multiple sequence alignment - TraesCS6A01G106200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G106200	chr6A	100.000	5180	0	0	1	5180	74146972	74152151	0.000000e+00	9566.0
1	TraesCS6A01G106200	chr6A	90.609	3450	261	30	1162	4596	52290383	52286982	0.000000e+00	4518.0
2	TraesCS6A01G106200	chr6A	88.080	948	102	10	58	998	52292227	52291284	0.000000e+00	1114.0
3	TraesCS6A01G106200	chr6A	88.422	786	75	12	58	837	52187551	52186776	0.000000e+00	933.0
4	TraesCS6A01G106200	chr7D	96.796	4026	101	14	1160	5180	524311291	524315293	0.000000e+00	6695.0
5	TraesCS6A01G106200	chr7D	96.449	3436	98	12	1162	4592	524303648	524307064	0.000000e+00	5648.0
6	TraesCS6A01G106200	chr7D	95.578	3437	133	10	1162	4593	524248915	524252337	0.000000e+00	5487.0
7	TraesCS6A01G106200	chr7D	94.567	3442	161	16	1162	4593	562196475	562199900	0.000000e+00	5297.0
8	TraesCS6A01G106200	chr7D	94.118	1122	55	8	52	1166	524302015	524303132	0.000000e+00	1696.0
9	TraesCS6A01G106200	chr7D	91.618	1205	61	16	1	1166	524309563	524310766	0.000000e+00	1629.0
10	TraesCS6A01G106200	chr7D	91.719	1123	86	4	1	1117	524246913	524248034	0.000000e+00	1552.0
11	TraesCS6A01G106200	chr7D	91.755	946	73	2	1	942	524254898	524255842	0.000000e+00	1310.0
12	TraesCS6A01G106200	chr7D	86.396	566	51	12	443	1002	562195423	562195968	3.450000e-166	595.0
13	TraesCS6A01G106200	chr7D	90.719	431	39	1	4750	5180	523544636	523545065	1.620000e-159	573.0
14	TraesCS6A01G106200	chr7D	81.739	115	12	3	1052	1157	524256087	524256201	2.570000e-13	87.9
15	TraesCS6A01G106200	chr7A	94.186	3440	183	11	1159	4593	604249779	604253206	0.000000e+00	5228.0
16	TraesCS6A01G106200	chr7A	93.637	3442	204	7	1156	4593	604260556	604263986	0.000000e+00	5129.0
17	TraesCS6A01G106200	chr7A	93.632	3439	201	7	1159	4593	604255182	604258606	0.000000e+00	5121.0
18	TraesCS6A01G106200	chr7A	90.202	990	67	15	12	985	604287816	604288791	0.000000e+00	1264.0
19	TraesCS6A01G106200	chr7A	90.469	682	48	10	317	995	604248461	604249128	0.000000e+00	883.0
20	TraesCS6A01G106200	chr7A	95.463	551	11	4	4630	5180	604379167	604379703	0.000000e+00	867.0
21	TraesCS6A01G106200	chr7A	81.729	717	85	20	1	700	74435002	74434315	1.630000e-154	556.0
22	TraesCS6A01G106200	chr7A	88.462	312	27	3	1159	1470	604221541	604221843	8.190000e-98	368.0
23	TraesCS6A01G106200	chr7A	85.246	366	27	12	816	1166	604254276	604254629	8.250000e-93	351.0
24	TraesCS6A01G106200	chr7A	85.319	361	28	9	816	1164	604259668	604260015	2.970000e-92	350.0
25	TraesCS6A01G106200	chr7A	94.318	88	5	0	2	89	604220050	604220137	9.050000e-28	135.0
26	TraesCS6A01G106200	chr7A	93.182	88	6	0	2	89	604248209	604248296	4.210000e-26	130.0
27	TraesCS6A01G106200	chr6D	91.688	3080	220	19	1528	4596	41624299	41621245	0.000000e+00	4237.0
28	TraesCS6A01G106200	chr6B	88.596	947	99	7	58	1000	95509262	95510203	0.000000e+00	1142.0
29	TraesCS6A01G106200	chr6B	88.471	798	85	5	72	867	95545986	95546778	0.000000e+00	957.0
30	TraesCS6A01G106200	chr7B	94.264	523	24	3	4663	5180	560513760	560514281	0.000000e+00	795.0
31	TraesCS6A01G106200	chr7B	86.601	306	41	0	4875	5180	559630150	559630455	6.420000e-89	339.0
32	TraesCS6A01G106200	chr2B	92.208	77	5	1	12	87	687336435	687336359	1.970000e-19	108.0
33	TraesCS6A01G106200	chr2B	84.043	94	11	3	1	93	640344107	640344197	2.570000e-13	87.9
34	TraesCS6A01G106200	chr3B	87.500	88	8	3	4	89	644321163	644321249	1.190000e-16	99.0
35	TraesCS6A01G106200	chr3B	90.411	73	6	1	12	83	770755265	770755193	1.540000e-15	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G106200	chr6A	74146972	74152151	5179	False	9566.000	9566	100.000000	1	5180	1	chr6A.!!$F1	5179
1	TraesCS6A01G106200	chr6A	52286982	52292227	5245	True	2816.000	4518	89.344500	58	4596	2	chr6A.!!$R2	4538
2	TraesCS6A01G106200	chr6A	52186776	52187551	775	True	933.000	933	88.422000	58	837	1	chr6A.!!$R1	779
3	TraesCS6A01G106200	chr7D	524302015	524315293	13278	False	3917.000	6695	94.745250	1	5180	4	chr7D.!!$F3	5179
4	TraesCS6A01G106200	chr7D	562195423	562199900	4477	False	2946.000	5297	90.481500	443	4593	2	chr7D.!!$F4	4150
5	TraesCS6A01G106200	chr7D	524246913	524256201	9288	False	2109.225	5487	90.197750	1	4593	4	chr7D.!!$F2	4592
6	TraesCS6A01G106200	chr7A	604248209	604263986	15777	False	2456.000	5228	90.810143	2	4593	7	chr7A.!!$F4	4591
7	TraesCS6A01G106200	chr7A	604287816	604288791	975	False	1264.000	1264	90.202000	12	985	1	chr7A.!!$F1	973
8	TraesCS6A01G106200	chr7A	604379167	604379703	536	False	867.000	867	95.463000	4630	5180	1	chr7A.!!$F2	550
9	TraesCS6A01G106200	chr7A	74434315	74435002	687	True	556.000	556	81.729000	1	700	1	chr7A.!!$R1	699
10	TraesCS6A01G106200	chr7A	604220050	604221843	1793	False	251.500	368	91.390000	2	1470	2	chr7A.!!$F3	1468
11	TraesCS6A01G106200	chr6D	41621245	41624299	3054	True	4237.000	4237	91.688000	1528	4596	1	chr6D.!!$R1	3068
12	TraesCS6A01G106200	chr6B	95509262	95510203	941	False	1142.000	1142	88.596000	58	1000	1	chr6B.!!$F1	942
13	TraesCS6A01G106200	chr6B	95545986	95546778	792	False	957.000	957	88.471000	72	867	1	chr6B.!!$F2	795
14	TraesCS6A01G106200	chr7B	560513760	560514281	521	False	795.000	795	94.264000	4663	5180	1	chr7B.!!$F2	517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
89	104	0.036022	GGAGCTATCATGGGAGGCAC	59.964	60.000	0.00	0.00	5.01	F
1009	22481	0.179103	GCAACATAGCATGCAACCCC	60.179	55.000	21.98	42.12	4.95	F
1358	23525	0.618458	ATGCTTCCGCTTTCCCTACA	59.382	50.000	0.00	36.97	2.74	F
1452	23619	1.502231	CGCTAAATGGGATGTCTCGG	58.498	55.000	0.00	0.00	4.63	F
2301	24479	1.758440	AAGAGCAAGGTCCGCTGTGA	61.758	55.000	0.00	40.63	3.58	F
2370	24548	2.840576	GTGGCCAGTGGTGGGTAA	59.159	61.111	5.11	45.17	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1432	23599	0.861837	CGAGACATCCCATTTAGCGC	59.138	55.000	0.00	0.00	0.00	5.92	R
2568	24746	0.108186	CTTGTACCCGCTGCTGATGA	60.108	55.000	0.00	0.00	0.00	2.92	R
2698	24876	0.937304	GCGTCAAGTTGTCAGCTTCA	59.063	50.000	2.11	0.00	0.00	3.02	R
2816	24997	2.203070	GACAAGCCGGCGGATGAT	60.203	61.111	33.44	16.22	0.00	2.45	R
3564	25749	1.270412	ACTGCGTTTGACGGGTTATCA	60.270	47.619	2.48	0.00	42.82	2.15	R
4362	26555	0.456653	GCGGCGCATGAAAGAAACAT	60.457	50.000	29.21	0.00	0.00	2.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	104	0.036022	GGAGCTATCATGGGAGGCAC	59.964	60.000	0.00	0.00	0.00	5.01
139	160	1.760613	TGAGTTTTGGGTCTCTCGTGT	59.239	47.619	0.00	0.00	0.00	4.49
148	169	0.244994	GTCTCTCGTGTGAGGCATGT	59.755	55.000	0.00	0.00	42.79	3.21
168	191	0.535335	GAGCAACTCCGGGTGACATA	59.465	55.000	0.00	0.00	0.00	2.29
248	271	1.198713	ATGAACACCATCCGAGCTCT	58.801	50.000	12.85	0.00	0.00	4.09
249	272	0.247460	TGAACACCATCCGAGCTCTG	59.753	55.000	12.85	5.31	0.00	3.35
262	285	1.066422	GCTCTGGATGACGATGCGA	59.934	57.895	0.00	0.00	0.00	5.10
267	290	2.296480	GGATGACGATGCGACGCTC	61.296	63.158	22.08	14.32	36.70	5.03
293	319	5.428184	AATGAAGAGGAGGAAGAATCGTT	57.572	39.130	0.00	0.00	0.00	3.85
310	336	2.500098	TCGTTTTCGGATGAGGAGGAAT	59.500	45.455	0.00	0.00	44.25	3.01
313	339	4.270325	CGTTTTCGGATGAGGAGGAATAAC	59.730	45.833	0.00	0.00	39.94	1.89
320	346	2.764269	TGAGGAGGAATAACCAGAGGG	58.236	52.381	0.00	0.00	42.04	4.30
428	490	3.190535	GGTGATTTTGAACTATGCCGTGT	59.809	43.478	0.00	0.00	0.00	4.49
499	14347	7.894708	TGAAACATCACCATATTGTCAAATGT	58.105	30.769	0.00	0.00	0.00	2.71
525	14373	6.314400	ACATGTGAAAATCATATTTGCAAGCC	59.686	34.615	0.00	0.00	0.00	4.35
526	14374	6.040209	TGTGAAAATCATATTTGCAAGCCT	57.960	33.333	0.00	0.00	0.00	4.58
602	14450	2.358898	CCATATTTTACTGCGGCTGCTT	59.641	45.455	20.27	8.30	43.34	3.91
622	14470	2.190578	GCCAGCGCCCTACTTCAT	59.809	61.111	2.29	0.00	0.00	2.57
837	22308	1.153127	AAGCCACACCGAACCGAAA	60.153	52.632	0.00	0.00	0.00	3.46
854	22325	1.580704	GAAATCAGTACGTACGTGCCG	59.419	52.381	30.25	21.30	0.00	5.69
985	22456	1.602851	CTATACAGCACGTAGGTCGCT	59.397	52.381	6.66	6.66	44.19	4.93
1009	22481	0.179103	GCAACATAGCATGCAACCCC	60.179	55.000	21.98	0.00	42.12	4.95
1050	22522	1.153628	GTTCAGCGTATCTGCCGGT	60.154	57.895	1.90	0.00	42.56	5.28
1052	22524	2.279517	CAGCGTATCTGCCGGTCC	60.280	66.667	1.90	0.00	35.78	4.46
1053	22525	3.900892	AGCGTATCTGCCGGTCCG	61.901	66.667	3.60	3.60	34.65	4.79
1091	22698	1.607148	CACCGGTTTTCAGAAGGTTCC	59.393	52.381	2.97	0.00	32.04	3.62
1097	22704	3.951680	GGTTTTCAGAAGGTTCCAGAACA	59.048	43.478	12.32	0.00	42.85	3.18
1207	23374	8.854979	TTTTAATTCCGTCAGCATTTATCATG	57.145	30.769	0.00	0.00	0.00	3.07
1358	23525	0.618458	ATGCTTCCGCTTTCCCTACA	59.382	50.000	0.00	0.00	36.97	2.74
1445	23612	1.865865	CGTACAGCGCTAAATGGGAT	58.134	50.000	10.99	0.00	0.00	3.85
1452	23619	1.502231	CGCTAAATGGGATGTCTCGG	58.498	55.000	0.00	0.00	0.00	4.63
1958	24135	8.267620	TCAGGATAAATACATATGAAATGCCG	57.732	34.615	10.38	0.21	0.00	5.69
2099	24277	6.329460	GGAGGTAACATATAAAGAGGGGTCTT	59.671	42.308	0.00	0.00	41.41	3.01
2208	24386	4.069869	GCAAGCAGCAGTCTCCAA	57.930	55.556	0.00	0.00	44.79	3.53
2230	24408	2.258591	CTGGCTTGCTGCTGCTTG	59.741	61.111	17.00	10.08	42.39	4.01
2301	24479	1.758440	AAGAGCAAGGTCCGCTGTGA	61.758	55.000	0.00	0.00	40.63	3.58
2370	24548	2.840576	GTGGCCAGTGGTGGGTAA	59.159	61.111	5.11	0.00	45.17	2.85
2401	24579	2.904866	GTGGTCAACAAGCCGGCA	60.905	61.111	31.54	2.66	0.00	5.69
3248	25429	7.446106	TCAAGGGCCTAGATTGAATTTAGTA	57.554	36.000	6.41	0.00	30.33	1.82
3249	25430	7.280356	TCAAGGGCCTAGATTGAATTTAGTAC	58.720	38.462	6.41	0.00	30.33	2.73
3564	25749	3.023832	GGGCATAATATTAGCGGCCATT	58.976	45.455	25.04	0.00	43.09	3.16
3645	25830	4.344865	GCCAAGGCGGTGGAGGAA	62.345	66.667	13.68	0.00	41.65	3.36
3717	25902	2.679059	GCAGCTCAACTATCTCAAGGCA	60.679	50.000	0.00	0.00	0.00	4.75
3735	25920	1.334419	GCATGCATACGTGAGGCATTC	60.334	52.381	14.21	11.23	45.34	2.67
4097	26282	0.459237	AATCTCAGCGAGTCCAAGCG	60.459	55.000	5.66	0.00	38.61	4.68
4107	26292	0.179018	AGTCCAAGCGCAACCTCTTT	60.179	50.000	11.47	0.00	0.00	2.52
4362	26555	1.000233	GTTTCACGTACGAGCGAGCA	61.000	55.000	24.41	3.53	35.59	4.26
4363	26556	0.109458	TTTCACGTACGAGCGAGCAT	60.109	50.000	24.41	0.00	35.59	3.79
4382	26575	2.145905	GTTTCTTTCATGCGCCGCG	61.146	57.895	8.83	8.83	0.00	6.46
4436	26629	4.575885	ACAGTACGTGATAGGCAAACAAT	58.424	39.130	0.00	0.00	0.00	2.71
4602	26800	1.271271	GGGCAGCATAGAAGATGAGGG	60.271	57.143	0.00	0.00	0.00	4.30
4603	26801	1.419387	GGCAGCATAGAAGATGAGGGT	59.581	52.381	0.00	0.00	0.00	4.34
4604	26802	2.158696	GGCAGCATAGAAGATGAGGGTT	60.159	50.000	0.00	0.00	0.00	4.11
4606	26804	3.950395	GCAGCATAGAAGATGAGGGTTTT	59.050	43.478	0.00	0.00	0.00	2.43
4679	26877	0.319211	CCTGTGCGTTTGGTCGAGTA	60.319	55.000	0.00	0.00	0.00	2.59
4700	26898	7.334844	AGTATCACAATGAGAGACGTATTCA	57.665	36.000	0.24	0.00	32.75	2.57
4701	26899	7.946207	AGTATCACAATGAGAGACGTATTCAT	58.054	34.615	0.24	0.00	32.75	2.57
4702	26900	8.079203	AGTATCACAATGAGAGACGTATTCATC	58.921	37.037	8.74	0.00	32.75	2.92
5015	27217	0.679505	CACCTTCCTCTTCGACACCA	59.320	55.000	0.00	0.00	0.00	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	2.356278	GAAGCCACCCATGCCTCA	59.644	61.111	0.00	0.00	0.00	3.86
77	91	3.716195	CACCCGTGCCTCCCATGA	61.716	66.667	0.00	0.00	31.89	3.07
111	126	2.108952	AGACCCAAAACTCATGCCTTCT	59.891	45.455	0.00	0.00	0.00	2.85
139	160	0.321919	GGAGTTGCTCACATGCCTCA	60.322	55.000	0.00	0.00	31.08	3.86
148	169	1.480212	ATGTCACCCGGAGTTGCTCA	61.480	55.000	0.73	0.81	31.08	4.26
168	191	1.194781	AGGAAGACATGCGTCCACCT	61.195	55.000	18.66	8.28	46.29	4.00
248	271	2.582226	GCGTCGCATCGTCATCCA	60.582	61.111	13.44	0.00	0.00	3.41
249	272	2.278857	AGCGTCGCATCGTCATCC	60.279	61.111	21.09	0.00	0.00	3.51
262	285	2.611518	CTCCTCTTCATTTTCGAGCGT	58.388	47.619	0.00	0.00	0.00	5.07
267	290	5.006165	CGATTCTTCCTCCTCTTCATTTTCG	59.994	44.000	0.00	0.00	0.00	3.46
293	319	3.778075	TGGTTATTCCTCCTCATCCGAAA	59.222	43.478	0.00	0.00	37.07	3.46
310	336	2.620886	CGTCCTCTTCTCCCTCTGGTTA	60.621	54.545	0.00	0.00	0.00	2.85
313	339	0.033991	TCGTCCTCTTCTCCCTCTGG	60.034	60.000	0.00	0.00	0.00	3.86
320	346	3.629855	TCACTCATCATCGTCCTCTTCTC	59.370	47.826	0.00	0.00	0.00	2.87
428	490	9.502091	AAACAAAGACATAGCATAGTTCACTTA	57.498	29.630	0.00	0.00	0.00	2.24
499	14347	7.492020	GGCTTGCAAATATGATTTTCACATGTA	59.508	33.333	0.00	0.00	0.00	2.29
602	14450	3.003173	AAGTAGGGCGCTGGCTCA	61.003	61.111	14.51	0.00	44.30	4.26
854	22325	1.198637	GTCCAAGCACATGCAGAACTC	59.801	52.381	6.64	0.00	45.16	3.01
1052	22524	2.097153	GTGGCAAAATAAACCGCAAACG	60.097	45.455	0.00	0.00	39.67	3.60
1053	22525	2.222213	GGTGGCAAAATAAACCGCAAAC	59.778	45.455	0.00	0.00	35.62	2.93
1091	22698	4.568152	AAACGGTTCTGGAAATGTTCTG	57.432	40.909	0.00	0.00	0.00	3.02
1286	23453	7.531857	TGTTTTCCATTGTAAGGCTAATTCA	57.468	32.000	0.00	0.00	0.00	2.57
1432	23599	0.861837	CGAGACATCCCATTTAGCGC	59.138	55.000	0.00	0.00	0.00	5.92
1445	23612	1.834188	TGAGATGCTACACCGAGACA	58.166	50.000	0.00	0.00	0.00	3.41
1452	23619	3.496130	CGGGATTCAATGAGATGCTACAC	59.504	47.826	0.00	0.00	0.00	2.90
1948	24125	5.342433	CACATTTATCACACGGCATTTCAT	58.658	37.500	0.00	0.00	0.00	2.57
1958	24135	6.035220	TCGATCGTTTACCACATTTATCACAC	59.965	38.462	15.94	0.00	0.00	3.82
2230	24408	1.968540	GAGCAGCTGGGACACAACC	60.969	63.158	17.12	0.00	0.00	3.77
2301	24479	1.734477	GTCGCTGATGAGCACGTGT	60.734	57.895	18.38	3.69	46.62	4.49
2370	24548	3.402681	CCACCATCTCGGGCAGGT	61.403	66.667	0.00	0.00	40.22	4.00
2401	24579	0.880278	CGCGATGGATCCAACGGAAT	60.880	55.000	36.05	14.27	41.45	3.01
2568	24746	0.108186	CTTGTACCCGCTGCTGATGA	60.108	55.000	0.00	0.00	0.00	2.92
2698	24876	0.937304	GCGTCAAGTTGTCAGCTTCA	59.063	50.000	2.11	0.00	0.00	3.02
2816	24997	2.203070	GACAAGCCGGCGGATGAT	60.203	61.111	33.44	16.22	0.00	2.45
3248	25429	2.208872	AGGACTATGAGGCAATTGGGT	58.791	47.619	7.72	0.00	0.00	4.51
3249	25430	3.136443	TGTAGGACTATGAGGCAATTGGG	59.864	47.826	7.72	0.00	0.00	4.12
3564	25749	1.270412	ACTGCGTTTGACGGGTTATCA	60.270	47.619	2.48	0.00	42.82	2.15
3665	25850	2.356313	CTTGCACCAGTCGCTCGT	60.356	61.111	0.00	0.00	0.00	4.18
4362	26555	0.456653	GCGGCGCATGAAAGAAACAT	60.457	50.000	29.21	0.00	0.00	2.71
4363	26556	1.081509	GCGGCGCATGAAAGAAACA	60.082	52.632	29.21	0.00	0.00	2.83
4382	26575	0.389757	GACAAGCCTAGGACGATCCC	59.610	60.000	14.75	0.00	37.19	3.85
4436	26629	8.553153	TGTCCAAAATTAATACTAGATGGGTGA	58.447	33.333	0.00	0.00	0.00	4.02
4482	26677	9.494271	GTTGGTGATATAAAGAGCATCATCTTA	57.506	33.333	0.00	0.00	38.59	2.10
4608	26806	6.595682	ACTTCTCATCTTCTCACCTCAAAAA	58.404	36.000	0.00	0.00	0.00	1.94
4609	26807	6.179906	ACTTCTCATCTTCTCACCTCAAAA	57.820	37.500	0.00	0.00	0.00	2.44
4610	26808	5.279708	GGACTTCTCATCTTCTCACCTCAAA	60.280	44.000	0.00	0.00	0.00	2.69
4611	26809	4.221703	GGACTTCTCATCTTCTCACCTCAA	59.778	45.833	0.00	0.00	0.00	3.02
4612	26810	3.766591	GGACTTCTCATCTTCTCACCTCA	59.233	47.826	0.00	0.00	0.00	3.86
4613	26811	3.181491	CGGACTTCTCATCTTCTCACCTC	60.181	52.174	0.00	0.00	0.00	3.85
4615	26813	2.159170	CCGGACTTCTCATCTTCTCACC	60.159	54.545	0.00	0.00	0.00	4.02
4616	26814	2.494073	ACCGGACTTCTCATCTTCTCAC	59.506	50.000	9.46	0.00	0.00	3.51
4617	26815	2.808919	ACCGGACTTCTCATCTTCTCA	58.191	47.619	9.46	0.00	0.00	3.27
4618	26816	3.193691	TCAACCGGACTTCTCATCTTCTC	59.806	47.826	9.46	0.00	0.00	2.87
4619	26817	3.165875	TCAACCGGACTTCTCATCTTCT	58.834	45.455	9.46	0.00	0.00	2.85
4620	26818	3.594603	TCAACCGGACTTCTCATCTTC	57.405	47.619	9.46	0.00	0.00	2.87
4621	26819	4.351874	TTTCAACCGGACTTCTCATCTT	57.648	40.909	9.46	0.00	0.00	2.40
4622	26820	4.065789	GTTTTCAACCGGACTTCTCATCT	58.934	43.478	9.46	0.00	0.00	2.90
4623	26821	3.813166	TGTTTTCAACCGGACTTCTCATC	59.187	43.478	9.46	0.00	0.00	2.92
4624	26822	3.815401	CTGTTTTCAACCGGACTTCTCAT	59.185	43.478	9.46	0.00	0.00	2.90
4625	26823	3.118555	TCTGTTTTCAACCGGACTTCTCA	60.119	43.478	9.46	0.00	0.00	3.27
4626	26824	3.247886	GTCTGTTTTCAACCGGACTTCTC	59.752	47.826	9.46	0.00	33.43	2.87
4627	26825	3.203716	GTCTGTTTTCAACCGGACTTCT	58.796	45.455	9.46	0.00	33.43	2.85
4628	26826	2.940410	TGTCTGTTTTCAACCGGACTTC	59.060	45.455	9.46	0.00	35.57	3.01
4679	26877	6.809869	TGATGAATACGTCTCTCATTGTGAT	58.190	36.000	0.00	0.00	33.61	3.06
4700	26898	2.507058	TCTGTTTAGCTGCCCATCTGAT	59.493	45.455	0.00	0.00	0.00	2.90
4701	26899	1.908619	TCTGTTTAGCTGCCCATCTGA	59.091	47.619	0.00	0.00	0.00	3.27
4702	26900	2.408271	TCTGTTTAGCTGCCCATCTG	57.592	50.000	0.00	0.00	0.00	2.90
4760	26962	1.080974	GACGAAGAAAGACGGCCGA	60.081	57.895	35.90	0.00	0.00	5.54

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.