Multiple sequence alignment - TraesCS6A01G105500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G105500 chr6A 100.000 3228 0 0 1 3228 73836200 73839427 0.000000e+00 5962.0
1 TraesCS6A01G105500 chr6A 94.413 179 10 0 141 319 73827845 73828023 3.170000e-70 276.0
2 TraesCS6A01G105500 chr6A 71.902 1057 244 33 1112 2134 73686861 73685824 1.150000e-64 257.0
3 TraesCS6A01G105500 chr6A 78.673 211 34 10 1327 1530 73654112 73653906 2.610000e-26 130.0
4 TraesCS6A01G105500 chr6A 100.000 41 0 0 512 552 73836670 73836710 3.450000e-10 76.8
5 TraesCS6A01G105500 chr6A 100.000 41 0 0 471 511 73836711 73836751 3.450000e-10 76.8
6 TraesCS6A01G105500 chr6B 92.764 2225 115 23 141 2357 132160892 132163078 0.000000e+00 3175.0
7 TraesCS6A01G105500 chr6B 93.619 862 50 3 2372 3228 132163040 132163901 0.000000e+00 1282.0
8 TraesCS6A01G105500 chr6D 93.895 1900 84 21 141 2036 58633502 58635373 0.000000e+00 2837.0
9 TraesCS6A01G105500 chr6D 92.913 635 35 2 2257 2891 58636925 58637549 0.000000e+00 915.0
10 TraesCS6A01G105500 chr6D 93.258 356 17 3 2877 3228 58638877 58639229 4.770000e-143 518.0
11 TraesCS6A01G105500 chr6D 76.873 307 62 9 1230 1530 58528780 58528477 7.160000e-37 165.0
12 TraesCS6A01G105500 chrUn 90.625 128 12 0 3 130 101303481 101303354 1.540000e-38 171.0
13 TraesCS6A01G105500 chrUn 89.683 126 13 0 5 130 16950915 16951040 9.270000e-36 161.0
14 TraesCS6A01G105500 chrUn 89.683 126 13 0 5 130 266455161 266455286 9.270000e-36 161.0
15 TraesCS6A01G105500 chrUn 89.683 126 13 0 5 130 282234376 282234251 9.270000e-36 161.0
16 TraesCS6A01G105500 chr3A 90.698 129 11 1 3 130 171182411 171182539 1.540000e-38 171.0
17 TraesCS6A01G105500 chr7A 89.744 117 12 0 1 117 692723013 692723129 2.010000e-32 150.0
18 TraesCS6A01G105500 chr2A 86.260 131 17 1 1 130 35783565 35783695 1.210000e-29 141.0
19 TraesCS6A01G105500 chr2B 91.176 102 9 0 1 102 697445347 697445246 4.340000e-29 139.0
20 TraesCS6A01G105500 chr5B 88.235 102 11 1 30 130 372122859 372122758 1.570000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G105500 chr6A 73836200 73839427 3227 False 2038.533333 5962 100.000000 1 3228 3 chr6A.!!$F2 3227
1 TraesCS6A01G105500 chr6A 73685824 73686861 1037 True 257.000000 257 71.902000 1112 2134 1 chr6A.!!$R2 1022
2 TraesCS6A01G105500 chr6B 132160892 132163901 3009 False 2228.500000 3175 93.191500 141 3228 2 chr6B.!!$F1 3087
3 TraesCS6A01G105500 chr6D 58633502 58639229 5727 False 1423.333333 2837 93.355333 141 3228 3 chr6D.!!$F1 3087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.040514 CGTCGCCATGAAGCAAAACA 60.041 50.0 0.0 0.0 0.00 2.83 F
60 61 0.107945 ACGGAGAAAGCAGAGATGCC 60.108 55.0 0.0 0.0 34.90 4.40 F
138 139 0.165079 GTGGTCGTGGCGTGTATTTG 59.835 55.0 0.0 0.0 0.00 2.32 F
1622 1643 0.179089 CCGATCTCCACAGCCTTCTG 60.179 60.0 0.0 0.0 45.71 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1046 1050 0.827368 AGAAATCGAGGAGGGCAGAC 59.173 55.000 0.00 0.00 0.00 3.51 R
1572 1579 1.260561 GACAACGCTGTTGTCGTCATT 59.739 47.619 26.67 7.94 39.29 2.57 R
1747 1783 1.487482 CATATCGTCAACGCGGATGT 58.513 50.000 12.47 0.00 39.60 3.06 R
2682 4179 0.891904 GCCTAAGGGTTTTCGCCACA 60.892 55.000 0.00 0.00 34.45 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.430862 GCCGTCGCCATGAAGCAA 61.431 61.111 0.00 0.00 0.00 3.91
19 20 2.976840 GCCGTCGCCATGAAGCAAA 61.977 57.895 0.00 0.00 0.00 3.68
20 21 1.578926 CCGTCGCCATGAAGCAAAA 59.421 52.632 0.00 0.00 0.00 2.44
21 22 0.729140 CCGTCGCCATGAAGCAAAAC 60.729 55.000 0.00 0.00 0.00 2.43
22 23 0.040514 CGTCGCCATGAAGCAAAACA 60.041 50.000 0.00 0.00 0.00 2.83
23 24 1.599171 CGTCGCCATGAAGCAAAACAA 60.599 47.619 0.00 0.00 0.00 2.83
24 25 2.468831 GTCGCCATGAAGCAAAACAAA 58.531 42.857 0.00 0.00 0.00 2.83
25 26 2.472488 GTCGCCATGAAGCAAAACAAAG 59.528 45.455 0.00 0.00 0.00 2.77
26 27 2.360483 TCGCCATGAAGCAAAACAAAGA 59.640 40.909 0.00 0.00 0.00 2.52
27 28 2.727798 CGCCATGAAGCAAAACAAAGAG 59.272 45.455 0.00 0.00 0.00 2.85
28 29 3.550639 CGCCATGAAGCAAAACAAAGAGA 60.551 43.478 0.00 0.00 0.00 3.10
29 30 4.563061 GCCATGAAGCAAAACAAAGAGAT 58.437 39.130 0.00 0.00 0.00 2.75
30 31 4.387862 GCCATGAAGCAAAACAAAGAGATG 59.612 41.667 0.00 0.00 0.00 2.90
31 32 4.927425 CCATGAAGCAAAACAAAGAGATGG 59.073 41.667 0.00 0.00 0.00 3.51
32 33 4.589216 TGAAGCAAAACAAAGAGATGGG 57.411 40.909 0.00 0.00 0.00 4.00
33 34 4.214310 TGAAGCAAAACAAAGAGATGGGA 58.786 39.130 0.00 0.00 0.00 4.37
34 35 4.834496 TGAAGCAAAACAAAGAGATGGGAT 59.166 37.500 0.00 0.00 0.00 3.85
35 36 5.047802 TGAAGCAAAACAAAGAGATGGGATC 60.048 40.000 0.00 0.00 0.00 3.36
36 37 3.441572 AGCAAAACAAAGAGATGGGATCG 59.558 43.478 0.00 0.00 0.00 3.69
37 38 3.440173 GCAAAACAAAGAGATGGGATCGA 59.560 43.478 0.00 0.00 0.00 3.59
38 39 4.437930 GCAAAACAAAGAGATGGGATCGAG 60.438 45.833 0.00 0.00 0.00 4.04
39 40 4.826274 AAACAAAGAGATGGGATCGAGA 57.174 40.909 0.00 0.00 0.00 4.04
40 41 4.399004 AACAAAGAGATGGGATCGAGAG 57.601 45.455 0.00 0.00 0.00 3.20
42 43 3.383185 ACAAAGAGATGGGATCGAGAGAC 59.617 47.826 0.00 0.00 46.97 3.36
43 44 1.890876 AGAGATGGGATCGAGAGACG 58.109 55.000 0.00 0.00 46.97 4.18
44 45 0.878416 GAGATGGGATCGAGAGACGG 59.122 60.000 0.00 0.00 46.97 4.79
45 46 0.474614 AGATGGGATCGAGAGACGGA 59.525 55.000 0.00 0.00 46.97 4.69
46 47 0.878416 GATGGGATCGAGAGACGGAG 59.122 60.000 0.00 0.00 46.97 4.63
47 48 0.474614 ATGGGATCGAGAGACGGAGA 59.525 55.000 0.00 0.00 46.97 3.71
48 49 0.255033 TGGGATCGAGAGACGGAGAA 59.745 55.000 0.00 0.00 46.97 2.87
49 50 1.340697 TGGGATCGAGAGACGGAGAAA 60.341 52.381 0.00 0.00 46.97 2.52
50 51 1.335496 GGGATCGAGAGACGGAGAAAG 59.665 57.143 0.00 0.00 46.97 2.62
51 52 1.268845 GGATCGAGAGACGGAGAAAGC 60.269 57.143 0.00 0.00 46.97 3.51
52 53 1.402259 GATCGAGAGACGGAGAAAGCA 59.598 52.381 0.00 0.00 46.97 3.91
53 54 0.805614 TCGAGAGACGGAGAAAGCAG 59.194 55.000 0.00 0.00 42.82 4.24
54 55 0.805614 CGAGAGACGGAGAAAGCAGA 59.194 55.000 0.00 0.00 38.46 4.26
55 56 1.202132 CGAGAGACGGAGAAAGCAGAG 60.202 57.143 0.00 0.00 38.46 3.35
56 57 2.088423 GAGAGACGGAGAAAGCAGAGA 58.912 52.381 0.00 0.00 0.00 3.10
57 58 2.687935 GAGAGACGGAGAAAGCAGAGAT 59.312 50.000 0.00 0.00 0.00 2.75
58 59 2.426738 AGAGACGGAGAAAGCAGAGATG 59.573 50.000 0.00 0.00 0.00 2.90
59 60 1.134848 AGACGGAGAAAGCAGAGATGC 60.135 52.381 0.00 0.00 0.00 3.91
60 61 0.107945 ACGGAGAAAGCAGAGATGCC 60.108 55.000 0.00 0.00 34.90 4.40
61 62 0.813210 CGGAGAAAGCAGAGATGCCC 60.813 60.000 0.00 0.00 34.90 5.36
62 63 0.813210 GGAGAAAGCAGAGATGCCCG 60.813 60.000 0.00 0.00 34.90 6.13
63 64 1.435408 GAGAAAGCAGAGATGCCCGC 61.435 60.000 0.00 0.00 34.90 6.13
64 65 2.817423 GAAAGCAGAGATGCCCGCG 61.817 63.158 0.00 0.00 34.90 6.46
65 66 3.612247 AAAGCAGAGATGCCCGCGT 62.612 57.895 4.92 0.00 34.90 6.01
66 67 4.827087 AGCAGAGATGCCCGCGTG 62.827 66.667 4.92 0.00 34.90 5.34
67 68 4.819761 GCAGAGATGCCCGCGTGA 62.820 66.667 4.92 0.00 0.00 4.35
68 69 2.584418 CAGAGATGCCCGCGTGAG 60.584 66.667 4.92 0.00 0.00 3.51
69 70 2.755876 AGAGATGCCCGCGTGAGA 60.756 61.111 4.92 0.00 0.00 3.27
70 71 2.279120 GAGATGCCCGCGTGAGAG 60.279 66.667 4.92 0.00 0.00 3.20
78 79 4.327885 CGCGTGAGAGGATAAGGC 57.672 61.111 0.00 0.00 0.00 4.35
79 80 1.736586 CGCGTGAGAGGATAAGGCT 59.263 57.895 0.00 0.00 0.00 4.58
80 81 0.952280 CGCGTGAGAGGATAAGGCTA 59.048 55.000 0.00 0.00 0.00 3.93
81 82 1.068885 CGCGTGAGAGGATAAGGCTAG 60.069 57.143 0.00 0.00 0.00 3.42
82 83 1.336424 GCGTGAGAGGATAAGGCTAGC 60.336 57.143 6.04 6.04 0.00 3.42
83 84 1.068885 CGTGAGAGGATAAGGCTAGCG 60.069 57.143 9.00 0.00 0.00 4.26
84 85 1.271102 GTGAGAGGATAAGGCTAGCGG 59.729 57.143 9.00 0.00 0.00 5.52
85 86 0.892063 GAGAGGATAAGGCTAGCGGG 59.108 60.000 9.00 0.00 0.00 6.13
86 87 0.483328 AGAGGATAAGGCTAGCGGGA 59.517 55.000 9.00 0.00 0.00 5.14
87 88 0.604073 GAGGATAAGGCTAGCGGGAC 59.396 60.000 9.00 0.00 0.00 4.46
134 135 4.345962 CCGTGGTCGTGGCGTGTA 62.346 66.667 0.00 0.00 35.01 2.90
135 136 2.126228 CGTGGTCGTGGCGTGTAT 60.126 61.111 0.00 0.00 0.00 2.29
136 137 1.735198 CGTGGTCGTGGCGTGTATT 60.735 57.895 0.00 0.00 0.00 1.89
137 138 1.286354 CGTGGTCGTGGCGTGTATTT 61.286 55.000 0.00 0.00 0.00 1.40
138 139 0.165079 GTGGTCGTGGCGTGTATTTG 59.835 55.000 0.00 0.00 0.00 2.32
139 140 1.133869 GGTCGTGGCGTGTATTTGC 59.866 57.895 0.00 0.00 0.00 3.68
168 169 2.037772 AGTTTGTGTCGCCAGATCTCTT 59.962 45.455 0.00 0.00 0.00 2.85
204 205 3.006859 TCCTGACAGTTGGTGTGTCTATG 59.993 47.826 0.93 0.00 44.02 2.23
207 208 4.377021 TGACAGTTGGTGTGTCTATGAAC 58.623 43.478 4.96 0.00 44.02 3.18
222 223 6.871492 TGTCTATGAACGAAAGCAATTGACTA 59.129 34.615 10.34 0.00 30.57 2.59
244 245 2.161609 GCTATTAGTGCGGCAACTTTGT 59.838 45.455 3.23 0.00 0.00 2.83
251 252 1.001487 TGCGGCAACTTTGTCATCTTG 60.001 47.619 0.00 0.00 31.86 3.02
269 270 4.109050 TCTTGTTTCATGTTGTTTTCCGC 58.891 39.130 0.00 0.00 0.00 5.54
333 334 2.840651 TGGTGGGAGAGGAGAGAAAATC 59.159 50.000 0.00 0.00 0.00 2.17
341 342 3.478345 GAGAGAAAATCCGCGCGCG 62.478 63.158 43.73 43.73 39.44 6.86
355 356 1.787057 CGCGCGAGATAGAAGAGGGT 61.787 60.000 28.94 0.00 0.00 4.34
372 373 1.098712 GGTGTTGTGCGTCTCCCAAA 61.099 55.000 0.00 0.00 0.00 3.28
375 376 2.028130 TGTTGTGCGTCTCCCAAAAAT 58.972 42.857 0.00 0.00 0.00 1.82
376 377 3.003897 GTGTTGTGCGTCTCCCAAAAATA 59.996 43.478 0.00 0.00 0.00 1.40
410 411 2.893489 AGCATTGAAAGGGAGTGGTTTC 59.107 45.455 0.00 0.00 33.94 2.78
414 415 0.250770 GAAAGGGAGTGGTTTCGCCT 60.251 55.000 0.00 0.00 38.35 5.52
419 420 1.534729 GGAGTGGTTTCGCCTGAAAT 58.465 50.000 0.00 0.00 45.31 2.17
437 439 3.732048 AATTAGTGTTCGGGACCCAAT 57.268 42.857 12.15 0.00 0.00 3.16
449 451 1.668419 GACCCAATCACTAAGCGCAT 58.332 50.000 11.47 0.00 0.00 4.73
468 470 3.062466 TCGGGCGTCCTCTCTGTG 61.062 66.667 3.66 0.00 0.00 3.66
469 471 4.135153 CGGGCGTCCTCTCTGTGG 62.135 72.222 3.66 0.00 0.00 4.17
470 472 4.459089 GGGCGTCCTCTCTGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
471 473 4.459089 GGCGTCCTCTCTGTGGCC 62.459 72.222 0.00 0.00 0.00 5.36
472 474 4.803426 GCGTCCTCTCTGTGGCCG 62.803 72.222 0.00 0.00 0.00 6.13
473 475 4.803426 CGTCCTCTCTGTGGCCGC 62.803 72.222 10.11 10.11 0.00 6.53
474 476 4.803426 GTCCTCTCTGTGGCCGCG 62.803 72.222 12.58 0.00 0.00 6.46
477 479 4.363990 CTCTCTGTGGCCGCGTGT 62.364 66.667 12.58 0.00 0.00 4.49
478 480 2.986979 TCTCTGTGGCCGCGTGTA 60.987 61.111 12.58 0.00 0.00 2.90
492 494 3.607661 TGTAGGCCGCGTGTGTCA 61.608 61.111 4.92 0.00 0.00 3.58
522 524 3.116531 GTTCCACCGCGTGTAGGC 61.117 66.667 4.92 0.00 0.00 3.93
523 525 4.382320 TTCCACCGCGTGTAGGCC 62.382 66.667 4.92 0.00 0.00 5.19
533 535 3.607661 TGTAGGCCGCGTGTGTCA 61.608 61.111 4.92 0.00 0.00 3.58
534 536 2.809601 GTAGGCCGCGTGTGTCAG 60.810 66.667 4.92 0.00 0.00 3.51
535 537 2.986979 TAGGCCGCGTGTGTCAGA 60.987 61.111 4.92 0.00 0.00 3.27
536 538 2.566570 TAGGCCGCGTGTGTCAGAA 61.567 57.895 4.92 0.00 0.00 3.02
537 539 2.486636 TAGGCCGCGTGTGTCAGAAG 62.487 60.000 4.92 0.00 0.00 2.85
538 540 3.414700 GCCGCGTGTGTCAGAAGG 61.415 66.667 4.92 0.00 0.00 3.46
540 542 2.356313 CGCGTGTGTCAGAAGGCT 60.356 61.111 0.00 0.00 0.00 4.58
541 543 2.375766 CGCGTGTGTCAGAAGGCTC 61.376 63.158 0.00 0.00 0.00 4.70
542 544 2.375766 GCGTGTGTCAGAAGGCTCG 61.376 63.158 0.00 0.00 0.00 5.03
543 545 1.734477 CGTGTGTCAGAAGGCTCGG 60.734 63.158 0.00 0.00 0.00 4.63
544 546 2.029844 GTGTGTCAGAAGGCTCGGC 61.030 63.158 0.00 0.00 0.00 5.54
565 567 2.220586 TTCCATGGGACGGCTCACA 61.221 57.895 13.02 0.00 33.02 3.58
576 578 4.059459 GCTCACACACGCGTTCGG 62.059 66.667 10.22 4.20 40.69 4.30
679 681 3.035942 GACGTGTTGCTGATGTCAAAAC 58.964 45.455 0.00 2.78 30.87 2.43
687 689 5.885230 TGCTGATGTCAAAACTTAGATGG 57.115 39.130 0.00 0.00 0.00 3.51
788 792 3.557185 CCATTGATGTTCGATCGTGACAT 59.443 43.478 27.38 27.38 0.00 3.06
988 992 7.862873 CACATATATAGAGTATATGGCGGTGTG 59.137 40.741 15.58 5.47 40.43 3.82
990 994 5.889289 TATATAGAGTATATGGCGGTGTGCA 59.111 40.000 0.00 0.00 37.66 4.57
992 996 8.499649 TATATAGAGTATATGGCGGTGTGCACA 61.500 40.741 17.42 17.42 37.66 4.57
1044 1048 9.464714 TTTAGAAAGTCGCTATGTCAATCTATC 57.535 33.333 0.00 0.00 0.00 2.08
1046 1050 4.427096 AGTCGCTATGTCAATCTATCCG 57.573 45.455 0.00 0.00 0.00 4.18
1050 1054 4.083271 TCGCTATGTCAATCTATCCGTCTG 60.083 45.833 0.00 0.00 0.00 3.51
1089 1096 5.813513 TTCCCGGAACTTCTTAACTAAGT 57.186 39.130 0.73 0.00 38.82 2.24
1092 1099 5.305128 TCCCGGAACTTCTTAACTAAGTCAA 59.695 40.000 0.73 0.00 36.17 3.18
1093 1100 6.013984 TCCCGGAACTTCTTAACTAAGTCAAT 60.014 38.462 0.73 0.00 36.17 2.57
1097 1104 6.430000 GGAACTTCTTAACTAAGTCAATGCCA 59.570 38.462 0.00 0.00 36.17 4.92
1276 1283 3.209812 CGGCGACTCCAGGATCGA 61.210 66.667 19.59 0.00 40.86 3.59
1557 1564 3.897239 ACCACCAAACTCATGAAAGACA 58.103 40.909 0.00 0.00 0.00 3.41
1572 1579 2.768253 AGACAATGAAGACGATGGCA 57.232 45.000 0.00 0.00 0.00 4.92
1574 1581 3.614092 AGACAATGAAGACGATGGCAAT 58.386 40.909 0.00 0.00 0.00 3.56
1622 1643 0.179089 CCGATCTCCACAGCCTTCTG 60.179 60.000 0.00 0.00 45.71 3.02
1721 1742 1.009389 CACAGTCTCCGGTCTTTCGC 61.009 60.000 0.00 0.00 0.00 4.70
1747 1783 3.239449 TGGTGGAGAGCAAGAGAAACTA 58.761 45.455 0.00 0.00 0.00 2.24
1787 1823 2.251893 GATGTCAACGTCTTCGAGGTC 58.748 52.381 0.00 0.00 40.62 3.85
1961 1997 2.472695 TAGATGTCAACACAGTGGGC 57.527 50.000 5.31 0.00 35.41 5.36
2120 3553 4.745125 CCACATGTGGTGTACGATATTCTC 59.255 45.833 32.94 0.00 46.44 2.87
2159 3592 2.155924 GCTGTAACTTCGACACTTCTGC 59.844 50.000 0.00 0.00 0.00 4.26
2170 3603 0.874175 CACTTCTGCGTGACACCGAA 60.874 55.000 0.00 0.26 37.06 4.30
2275 3709 6.198687 TCTTTCTACTTTGATGTTTGCAACG 58.801 36.000 0.00 0.00 0.00 4.10
2279 3713 7.017498 TCTACTTTGATGTTTGCAACGTTAA 57.983 32.000 0.00 0.00 31.42 2.01
2304 3738 6.688637 ATTGGCATTATATGATGATGACGG 57.311 37.500 11.46 0.00 37.10 4.79
2308 3742 5.063944 GGCATTATATGATGATGACGGTGAC 59.936 44.000 11.46 0.00 0.00 3.67
2366 3800 8.912988 AGTTTGTATTTTCTTTCAGAACATGGA 58.087 29.630 0.00 0.00 33.26 3.41
2367 3801 9.185192 GTTTGTATTTTCTTTCAGAACATGGAG 57.815 33.333 0.00 0.00 33.26 3.86
2368 3802 8.690203 TTGTATTTTCTTTCAGAACATGGAGA 57.310 30.769 0.00 0.00 33.26 3.71
2369 3803 8.690203 TGTATTTTCTTTCAGAACATGGAGAA 57.310 30.769 0.00 0.00 33.26 2.87
2370 3804 9.130661 TGTATTTTCTTTCAGAACATGGAGAAA 57.869 29.630 0.00 3.71 38.52 2.52
2371 3805 9.965824 GTATTTTCTTTCAGAACATGGAGAAAA 57.034 29.630 16.67 16.67 45.13 2.29
2374 3808 8.876275 TTTCTTTCAGAACATGGAGAAAATTG 57.124 30.769 0.00 0.00 37.94 2.32
2375 3809 6.985117 TCTTTCAGAACATGGAGAAAATTGG 58.015 36.000 0.00 0.00 30.49 3.16
2376 3810 6.777091 TCTTTCAGAACATGGAGAAAATTGGA 59.223 34.615 0.00 0.00 30.49 3.53
2377 3811 7.452501 TCTTTCAGAACATGGAGAAAATTGGAT 59.547 33.333 0.00 0.00 30.49 3.41
2378 3812 7.543359 TTCAGAACATGGAGAAAATTGGATT 57.457 32.000 0.00 0.00 0.00 3.01
2379 3813 7.543359 TCAGAACATGGAGAAAATTGGATTT 57.457 32.000 0.00 0.00 0.00 2.17
2380 3814 8.648698 TCAGAACATGGAGAAAATTGGATTTA 57.351 30.769 0.00 0.00 0.00 1.40
2381 3815 9.258629 TCAGAACATGGAGAAAATTGGATTTAT 57.741 29.630 0.00 0.00 0.00 1.40
2382 3816 9.880157 CAGAACATGGAGAAAATTGGATTTATT 57.120 29.630 0.00 0.00 0.00 1.40
2433 3920 4.321745 CACTTTGACGCTTGCAACATTATC 59.678 41.667 0.00 0.00 0.00 1.75
2437 3924 5.058149 TGACGCTTGCAACATTATCATTT 57.942 34.783 0.00 0.00 0.00 2.32
2446 3933 8.700722 TTGCAACATTATCATTTGTATTGGAC 57.299 30.769 0.00 0.00 0.00 4.02
2447 3934 6.971756 TGCAACATTATCATTTGTATTGGACG 59.028 34.615 0.00 0.00 0.00 4.79
2448 3935 7.148171 TGCAACATTATCATTTGTATTGGACGA 60.148 33.333 0.00 0.00 0.00 4.20
2449 3936 7.862372 GCAACATTATCATTTGTATTGGACGAT 59.138 33.333 0.00 0.00 0.00 3.73
2450 3937 9.172820 CAACATTATCATTTGTATTGGACGATG 57.827 33.333 0.00 0.00 0.00 3.84
2451 3938 8.675705 ACATTATCATTTGTATTGGACGATGA 57.324 30.769 0.00 0.00 37.52 2.92
2452 3939 9.288576 ACATTATCATTTGTATTGGACGATGAT 57.711 29.630 0.00 0.00 42.25 2.45
2453 3940 9.550811 CATTATCATTTGTATTGGACGATGATG 57.449 33.333 12.74 0.00 40.92 3.07
2454 3941 6.564709 ATCATTTGTATTGGACGATGATGG 57.435 37.500 0.00 0.00 40.06 3.51
2464 3960 2.096069 GGACGATGATGGCGATGATTTG 60.096 50.000 0.00 0.00 0.00 2.32
2495 3991 9.187455 GGTAAAAATAACAACAACAATGACGAT 57.813 29.630 0.00 0.00 0.00 3.73
2609 4106 3.119029 GCCATTGTTAATGTGCAGTCCAT 60.119 43.478 0.00 0.00 37.18 3.41
2634 4131 1.395608 ACCACAACTTGTCGTTTGTCG 59.604 47.619 0.00 0.00 41.41 4.35
2642 4139 1.855513 TGTCGTTTGTCGTTGGGTAG 58.144 50.000 0.00 0.00 40.80 3.18
2794 4291 7.391148 ACTATGATGGTTACAAAATCACCAC 57.609 36.000 0.00 0.00 43.44 4.16
2945 5786 0.825010 GCATGAATACTGGCCCTGGG 60.825 60.000 8.86 8.86 0.00 4.45
2985 5826 9.846248 AAGTAAAATTGAAAGAATGATCGGAAG 57.154 29.630 0.00 0.00 0.00 3.46
3028 5871 3.059393 GGTAAGCGTAGACAACAACCAAC 60.059 47.826 0.00 0.00 0.00 3.77
3090 5933 6.119144 ACCTTATGAACATACACGAAATGC 57.881 37.500 0.00 0.00 0.00 3.56
3106 5949 3.407424 AATGCATGCCTAGCTTCGATA 57.593 42.857 16.68 0.00 0.00 2.92
3138 5981 6.592798 AACGAGTGAAAGTTATTCGTCAAA 57.407 33.333 0.00 0.00 42.92 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.470801 TTTTGCTTCATGGCGACGGC 62.471 55.000 15.43 15.43 38.90 5.68
2 3 0.729140 GTTTTGCTTCATGGCGACGG 60.729 55.000 0.00 0.00 34.52 4.79
3 4 0.040514 TGTTTTGCTTCATGGCGACG 60.041 50.000 0.00 0.00 34.52 5.12
4 5 2.132740 TTGTTTTGCTTCATGGCGAC 57.867 45.000 0.00 0.00 34.52 5.19
5 6 2.360483 TCTTTGTTTTGCTTCATGGCGA 59.640 40.909 0.00 0.00 34.52 5.54
6 7 2.727798 CTCTTTGTTTTGCTTCATGGCG 59.272 45.455 0.00 0.00 34.52 5.69
7 8 3.981211 TCTCTTTGTTTTGCTTCATGGC 58.019 40.909 0.00 0.00 0.00 4.40
8 9 4.927425 CCATCTCTTTGTTTTGCTTCATGG 59.073 41.667 0.00 0.00 0.00 3.66
9 10 4.927425 CCCATCTCTTTGTTTTGCTTCATG 59.073 41.667 0.00 0.00 0.00 3.07
10 11 4.834496 TCCCATCTCTTTGTTTTGCTTCAT 59.166 37.500 0.00 0.00 0.00 2.57
11 12 4.214310 TCCCATCTCTTTGTTTTGCTTCA 58.786 39.130 0.00 0.00 0.00 3.02
12 13 4.853924 TCCCATCTCTTTGTTTTGCTTC 57.146 40.909 0.00 0.00 0.00 3.86
13 14 4.082571 CGATCCCATCTCTTTGTTTTGCTT 60.083 41.667 0.00 0.00 0.00 3.91
14 15 3.441572 CGATCCCATCTCTTTGTTTTGCT 59.558 43.478 0.00 0.00 0.00 3.91
15 16 3.440173 TCGATCCCATCTCTTTGTTTTGC 59.560 43.478 0.00 0.00 0.00 3.68
16 17 4.937620 TCTCGATCCCATCTCTTTGTTTTG 59.062 41.667 0.00 0.00 0.00 2.44
17 18 5.046304 TCTCTCGATCCCATCTCTTTGTTTT 60.046 40.000 0.00 0.00 0.00 2.43
18 19 4.467795 TCTCTCGATCCCATCTCTTTGTTT 59.532 41.667 0.00 0.00 0.00 2.83
19 20 4.026744 TCTCTCGATCCCATCTCTTTGTT 58.973 43.478 0.00 0.00 0.00 2.83
20 21 3.383185 GTCTCTCGATCCCATCTCTTTGT 59.617 47.826 0.00 0.00 0.00 2.83
21 22 3.549827 CGTCTCTCGATCCCATCTCTTTG 60.550 52.174 0.00 0.00 42.86 2.77
22 23 2.621055 CGTCTCTCGATCCCATCTCTTT 59.379 50.000 0.00 0.00 42.86 2.52
23 24 2.226330 CGTCTCTCGATCCCATCTCTT 58.774 52.381 0.00 0.00 42.86 2.85
24 25 1.544537 CCGTCTCTCGATCCCATCTCT 60.545 57.143 0.00 0.00 42.86 3.10
25 26 0.878416 CCGTCTCTCGATCCCATCTC 59.122 60.000 0.00 0.00 42.86 2.75
26 27 0.474614 TCCGTCTCTCGATCCCATCT 59.525 55.000 0.00 0.00 42.86 2.90
27 28 0.878416 CTCCGTCTCTCGATCCCATC 59.122 60.000 0.00 0.00 42.86 3.51
28 29 0.474614 TCTCCGTCTCTCGATCCCAT 59.525 55.000 0.00 0.00 42.86 4.00
29 30 0.255033 TTCTCCGTCTCTCGATCCCA 59.745 55.000 0.00 0.00 42.86 4.37
30 31 1.335496 CTTTCTCCGTCTCTCGATCCC 59.665 57.143 0.00 0.00 42.86 3.85
31 32 1.268845 GCTTTCTCCGTCTCTCGATCC 60.269 57.143 0.00 0.00 42.86 3.36
32 33 1.402259 TGCTTTCTCCGTCTCTCGATC 59.598 52.381 0.00 0.00 42.86 3.69
33 34 1.403679 CTGCTTTCTCCGTCTCTCGAT 59.596 52.381 0.00 0.00 42.86 3.59
34 35 0.805614 CTGCTTTCTCCGTCTCTCGA 59.194 55.000 0.00 0.00 42.86 4.04
35 36 0.805614 TCTGCTTTCTCCGTCTCTCG 59.194 55.000 0.00 0.00 39.52 4.04
36 37 2.088423 TCTCTGCTTTCTCCGTCTCTC 58.912 52.381 0.00 0.00 0.00 3.20
37 38 2.208132 TCTCTGCTTTCTCCGTCTCT 57.792 50.000 0.00 0.00 0.00 3.10
38 39 2.808244 CATCTCTGCTTTCTCCGTCTC 58.192 52.381 0.00 0.00 0.00 3.36
39 40 1.134848 GCATCTCTGCTTTCTCCGTCT 60.135 52.381 0.00 0.00 45.32 4.18
40 41 1.285578 GCATCTCTGCTTTCTCCGTC 58.714 55.000 0.00 0.00 45.32 4.79
41 42 3.450028 GCATCTCTGCTTTCTCCGT 57.550 52.632 0.00 0.00 45.32 4.69
51 52 2.584418 CTCACGCGGGCATCTCTG 60.584 66.667 12.47 0.00 0.00 3.35
52 53 2.755876 TCTCACGCGGGCATCTCT 60.756 61.111 12.47 0.00 0.00 3.10
53 54 2.279120 CTCTCACGCGGGCATCTC 60.279 66.667 12.47 0.00 0.00 2.75
54 55 3.842923 CCTCTCACGCGGGCATCT 61.843 66.667 12.47 0.00 0.00 2.90
55 56 1.806461 TATCCTCTCACGCGGGCATC 61.806 60.000 12.47 0.00 0.00 3.91
56 57 1.399744 TTATCCTCTCACGCGGGCAT 61.400 55.000 12.47 0.00 0.00 4.40
57 58 2.016393 CTTATCCTCTCACGCGGGCA 62.016 60.000 12.47 0.00 0.00 5.36
58 59 1.300233 CTTATCCTCTCACGCGGGC 60.300 63.158 12.47 0.00 0.00 6.13
59 60 1.364171 CCTTATCCTCTCACGCGGG 59.636 63.158 12.47 6.51 0.00 6.13
60 61 1.300233 GCCTTATCCTCTCACGCGG 60.300 63.158 12.47 0.00 0.00 6.46
61 62 0.952280 TAGCCTTATCCTCTCACGCG 59.048 55.000 3.53 3.53 0.00 6.01
62 63 1.336424 GCTAGCCTTATCCTCTCACGC 60.336 57.143 2.29 0.00 0.00 5.34
63 64 1.068885 CGCTAGCCTTATCCTCTCACG 60.069 57.143 9.66 0.00 0.00 4.35
64 65 1.271102 CCGCTAGCCTTATCCTCTCAC 59.729 57.143 9.66 0.00 0.00 3.51
65 66 1.621992 CCGCTAGCCTTATCCTCTCA 58.378 55.000 9.66 0.00 0.00 3.27
66 67 0.892063 CCCGCTAGCCTTATCCTCTC 59.108 60.000 9.66 0.00 0.00 3.20
67 68 0.483328 TCCCGCTAGCCTTATCCTCT 59.517 55.000 9.66 0.00 0.00 3.69
68 69 0.604073 GTCCCGCTAGCCTTATCCTC 59.396 60.000 9.66 0.00 0.00 3.71
69 70 1.179814 CGTCCCGCTAGCCTTATCCT 61.180 60.000 9.66 0.00 0.00 3.24
70 71 1.289380 CGTCCCGCTAGCCTTATCC 59.711 63.158 9.66 0.00 0.00 2.59
71 72 4.968197 CGTCCCGCTAGCCTTATC 57.032 61.111 9.66 0.00 0.00 1.75
117 118 3.636313 ATACACGCCACGACCACGG 62.636 63.158 0.00 0.00 44.46 4.94
118 119 1.286354 AAATACACGCCACGACCACG 61.286 55.000 0.00 0.00 45.75 4.94
119 120 0.165079 CAAATACACGCCACGACCAC 59.835 55.000 0.00 0.00 0.00 4.16
120 121 1.570347 GCAAATACACGCCACGACCA 61.570 55.000 0.00 0.00 0.00 4.02
121 122 1.133869 GCAAATACACGCCACGACC 59.866 57.895 0.00 0.00 0.00 4.79
122 123 0.515564 AAGCAAATACACGCCACGAC 59.484 50.000 0.00 0.00 0.00 4.34
123 124 0.515127 CAAGCAAATACACGCCACGA 59.485 50.000 0.00 0.00 0.00 4.35
124 125 0.237235 ACAAGCAAATACACGCCACG 59.763 50.000 0.00 0.00 0.00 4.94
125 126 1.265635 TCACAAGCAAATACACGCCAC 59.734 47.619 0.00 0.00 0.00 5.01
126 127 1.535028 CTCACAAGCAAATACACGCCA 59.465 47.619 0.00 0.00 0.00 5.69
127 128 1.804151 TCTCACAAGCAAATACACGCC 59.196 47.619 0.00 0.00 0.00 5.68
128 129 2.480419 ACTCTCACAAGCAAATACACGC 59.520 45.455 0.00 0.00 0.00 5.34
129 130 4.732285 AACTCTCACAAGCAAATACACG 57.268 40.909 0.00 0.00 0.00 4.49
130 131 5.682862 CACAAACTCTCACAAGCAAATACAC 59.317 40.000 0.00 0.00 0.00 2.90
131 132 5.356751 ACACAAACTCTCACAAGCAAATACA 59.643 36.000 0.00 0.00 0.00 2.29
132 133 5.821204 ACACAAACTCTCACAAGCAAATAC 58.179 37.500 0.00 0.00 0.00 1.89
133 134 5.277297 CGACACAAACTCTCACAAGCAAATA 60.277 40.000 0.00 0.00 0.00 1.40
134 135 4.496341 CGACACAAACTCTCACAAGCAAAT 60.496 41.667 0.00 0.00 0.00 2.32
135 136 3.181511 CGACACAAACTCTCACAAGCAAA 60.182 43.478 0.00 0.00 0.00 3.68
136 137 2.351418 CGACACAAACTCTCACAAGCAA 59.649 45.455 0.00 0.00 0.00 3.91
137 138 1.933181 CGACACAAACTCTCACAAGCA 59.067 47.619 0.00 0.00 0.00 3.91
138 139 1.333258 GCGACACAAACTCTCACAAGC 60.333 52.381 0.00 0.00 0.00 4.01
139 140 1.261619 GGCGACACAAACTCTCACAAG 59.738 52.381 0.00 0.00 0.00 3.16
168 169 1.478510 GTCAGGATTCGAAGAGAGCCA 59.521 52.381 3.35 0.00 38.43 4.75
204 205 4.670227 AGCTAGTCAATTGCTTTCGTTC 57.330 40.909 0.00 0.00 36.53 3.95
207 208 7.340699 CACTAATAGCTAGTCAATTGCTTTCG 58.659 38.462 0.00 0.00 38.92 3.46
222 223 2.403252 AAGTTGCCGCACTAATAGCT 57.597 45.000 0.00 0.00 0.00 3.32
244 245 5.976534 CGGAAAACAACATGAAACAAGATGA 59.023 36.000 0.00 0.00 0.00 2.92
251 252 2.722071 TCGCGGAAAACAACATGAAAC 58.278 42.857 6.13 0.00 0.00 2.78
269 270 2.511600 GATGTGGGAGGCCGTTCG 60.512 66.667 0.00 0.00 0.00 3.95
284 285 1.815421 GTGTGCAGGATTCGCCGAT 60.815 57.895 0.00 0.00 43.43 4.18
341 342 3.526534 GCACAACACCCTCTTCTATCTC 58.473 50.000 0.00 0.00 0.00 2.75
355 356 1.464734 TTTTTGGGAGACGCACAACA 58.535 45.000 0.00 0.00 40.26 3.33
372 373 3.756082 TGCTCCCCTGGTTTGATATTT 57.244 42.857 0.00 0.00 0.00 1.40
375 376 2.580322 TCAATGCTCCCCTGGTTTGATA 59.420 45.455 0.00 0.00 0.00 2.15
376 377 1.358787 TCAATGCTCCCCTGGTTTGAT 59.641 47.619 0.00 0.00 0.00 2.57
410 411 1.396996 CCCGAACACTAATTTCAGGCG 59.603 52.381 0.00 0.00 0.00 5.52
414 415 2.372504 TGGGTCCCGAACACTAATTTCA 59.627 45.455 2.65 0.00 30.14 2.69
419 420 1.979308 TGATTGGGTCCCGAACACTAA 59.021 47.619 0.50 0.00 30.14 2.24
437 439 1.153647 CCCGACATGCGCTTAGTGA 60.154 57.895 9.73 0.00 39.11 3.41
449 451 3.062466 CAGAGAGGACGCCCGACA 61.062 66.667 0.00 0.00 37.58 4.35
461 463 2.986979 TACACGCGGCCACAGAGA 60.987 61.111 12.47 0.00 0.00 3.10
474 476 3.110178 GACACACGCGGCCTACAC 61.110 66.667 12.47 0.00 0.00 2.90
475 477 3.567478 CTGACACACGCGGCCTACA 62.567 63.158 12.47 4.17 0.00 2.74
476 478 2.758770 TTCTGACACACGCGGCCTAC 62.759 60.000 12.47 0.00 0.00 3.18
477 479 2.486636 CTTCTGACACACGCGGCCTA 62.487 60.000 12.47 0.00 0.00 3.93
478 480 3.865929 CTTCTGACACACGCGGCCT 62.866 63.158 12.47 0.00 0.00 5.19
484 486 1.734477 CCGAGCCTTCTGACACACG 60.734 63.158 0.00 0.00 0.00 4.49
516 518 3.567478 CTGACACACGCGGCCTACA 62.567 63.158 12.47 4.17 0.00 2.74
517 519 2.758770 TTCTGACACACGCGGCCTAC 62.759 60.000 12.47 0.00 0.00 3.18
518 520 2.486636 CTTCTGACACACGCGGCCTA 62.487 60.000 12.47 0.00 0.00 3.93
519 521 3.865929 CTTCTGACACACGCGGCCT 62.866 63.158 12.47 0.00 0.00 5.19
522 524 3.414700 GCCTTCTGACACACGCGG 61.415 66.667 12.47 1.27 0.00 6.46
523 525 2.356313 AGCCTTCTGACACACGCG 60.356 61.111 3.53 3.53 0.00 6.01
527 529 2.343758 GCCGAGCCTTCTGACACA 59.656 61.111 0.00 0.00 0.00 3.72
528 530 2.435059 GGCCGAGCCTTCTGACAC 60.435 66.667 7.58 0.00 46.69 3.67
540 542 4.090588 GTCCCATGGAACGGCCGA 62.091 66.667 35.90 10.13 40.66 5.54
544 546 4.096003 AGCCGTCCCATGGAACGG 62.096 66.667 35.91 35.91 43.71 4.44
545 547 2.511600 GAGCCGTCCCATGGAACG 60.512 66.667 17.75 17.75 31.38 3.95
546 548 1.745489 GTGAGCCGTCCCATGGAAC 60.745 63.158 15.22 0.41 31.38 3.62
547 549 2.220586 TGTGAGCCGTCCCATGGAA 61.221 57.895 15.22 0.00 31.38 3.53
548 550 2.606213 TGTGAGCCGTCCCATGGA 60.606 61.111 15.22 0.00 0.00 3.41
549 551 2.436646 GTGTGAGCCGTCCCATGG 60.437 66.667 4.14 4.14 0.00 3.66
595 597 8.417106 TCTGTTTCCAAATGTTTAATAGTGCAA 58.583 29.630 0.00 0.00 0.00 4.08
640 642 2.101415 CGTCAGATGAGACAAGCCCATA 59.899 50.000 0.00 0.00 38.43 2.74
641 643 1.134580 CGTCAGATGAGACAAGCCCAT 60.135 52.381 0.00 0.00 38.43 4.00
990 994 3.196207 ATGGACAGGGCACGCTTGT 62.196 57.895 0.00 0.49 0.00 3.16
992 996 2.045926 GATGGACAGGGCACGCTT 60.046 61.111 0.00 0.00 0.00 4.68
1044 1048 1.961180 AAATCGAGGAGGGCAGACGG 61.961 60.000 0.00 0.00 0.00 4.79
1046 1050 0.827368 AGAAATCGAGGAGGGCAGAC 59.173 55.000 0.00 0.00 0.00 3.51
1050 1054 2.017782 GGAAAAGAAATCGAGGAGGGC 58.982 52.381 0.00 0.00 0.00 5.19
1276 1283 3.836176 GACGTGAACTGCCCGTCGT 62.836 63.158 0.00 0.00 41.12 4.34
1447 1454 6.523840 TCGGCTTTACTAACAAACTTAGGAA 58.476 36.000 0.00 0.00 0.00 3.36
1557 1564 2.352651 CGTCATTGCCATCGTCTTCATT 59.647 45.455 0.00 0.00 0.00 2.57
1572 1579 1.260561 GACAACGCTGTTGTCGTCATT 59.739 47.619 26.67 7.94 39.29 2.57
1574 1581 2.293765 GACAACGCTGTTGTCGTCA 58.706 52.632 26.67 0.00 39.29 4.35
1622 1643 2.817396 GGCTTGAGCTCGCTGTCC 60.817 66.667 9.64 2.00 41.70 4.02
1747 1783 1.487482 CATATCGTCAACGCGGATGT 58.513 50.000 12.47 0.00 39.60 3.06
1961 1997 6.808008 TTCTCTGCAAGATCCAAAGTTAAG 57.192 37.500 0.00 0.00 45.62 1.85
2120 3553 8.774586 AGTTACAGCTTGTCAATAACTTTACTG 58.225 33.333 4.25 0.00 24.97 2.74
2139 3572 2.405357 CGCAGAAGTGTCGAAGTTACAG 59.595 50.000 0.00 0.00 0.00 2.74
2159 3592 0.031585 TCACTTCCTTCGGTGTCACG 59.968 55.000 0.00 0.00 35.26 4.35
2279 3713 7.994911 ACCGTCATCATCATATAATGCCAATAT 59.005 33.333 0.00 0.00 0.00 1.28
2351 3785 6.777091 TCCAATTTTCTCCATGTTCTGAAAGA 59.223 34.615 0.00 0.00 44.68 2.52
2352 3786 6.985117 TCCAATTTTCTCCATGTTCTGAAAG 58.015 36.000 0.00 0.00 31.37 2.62
2353 3787 6.975196 TCCAATTTTCTCCATGTTCTGAAA 57.025 33.333 0.00 0.00 0.00 2.69
2354 3788 7.543359 AATCCAATTTTCTCCATGTTCTGAA 57.457 32.000 0.00 0.00 0.00 3.02
2355 3789 7.543359 AAATCCAATTTTCTCCATGTTCTGA 57.457 32.000 0.00 0.00 0.00 3.27
2356 3790 9.880157 AATAAATCCAATTTTCTCCATGTTCTG 57.120 29.630 0.00 0.00 33.82 3.02
2433 3920 4.539870 GCCATCATCGTCCAATACAAATG 58.460 43.478 0.00 0.00 0.00 2.32
2437 3924 1.410882 TCGCCATCATCGTCCAATACA 59.589 47.619 0.00 0.00 0.00 2.29
2446 3933 2.545106 TCACAAATCATCGCCATCATCG 59.455 45.455 0.00 0.00 0.00 3.84
2447 3934 4.473199 CATCACAAATCATCGCCATCATC 58.527 43.478 0.00 0.00 0.00 2.92
2448 3935 3.254903 CCATCACAAATCATCGCCATCAT 59.745 43.478 0.00 0.00 0.00 2.45
2449 3936 2.619646 CCATCACAAATCATCGCCATCA 59.380 45.455 0.00 0.00 0.00 3.07
2450 3937 2.620115 ACCATCACAAATCATCGCCATC 59.380 45.455 0.00 0.00 0.00 3.51
2451 3938 2.658285 ACCATCACAAATCATCGCCAT 58.342 42.857 0.00 0.00 0.00 4.40
2452 3939 2.127271 ACCATCACAAATCATCGCCA 57.873 45.000 0.00 0.00 0.00 5.69
2453 3940 4.630894 TTTACCATCACAAATCATCGCC 57.369 40.909 0.00 0.00 0.00 5.54
2454 3941 8.531530 GTTATTTTTACCATCACAAATCATCGC 58.468 33.333 0.00 0.00 0.00 4.58
2530 4026 4.584327 ACACCACTTCTTTTTGTATGCC 57.416 40.909 0.00 0.00 0.00 4.40
2609 4106 1.821759 CGACAAGTTGTGGTGGCCA 60.822 57.895 14.57 0.00 0.00 5.36
2642 4139 3.122971 GTTCACTAACCGGGCGCC 61.123 66.667 21.18 21.18 0.00 6.53
2675 4172 2.039879 AGGGTTTTCGCCACAGTATTCT 59.960 45.455 0.00 0.00 0.00 2.40
2682 4179 0.891904 GCCTAAGGGTTTTCGCCACA 60.892 55.000 0.00 0.00 34.45 4.17
2739 4236 5.818678 ATCAGGACACTAGGTACAAAACA 57.181 39.130 0.00 0.00 30.17 2.83
2794 4291 4.142988 ACGTTTACATTGACTAACGCATGG 60.143 41.667 16.43 0.00 45.12 3.66
2845 4342 5.654650 TCACAAAAATTGGTAGACAGGTTGT 59.345 36.000 0.00 0.00 34.12 3.32
2915 5754 7.148239 GGGCCAGTATTCATGCATAAGTTATAC 60.148 40.741 4.39 3.65 0.00 1.47
2945 5786 9.974980 TTCAATTTTACTTTTATGAACAGGGAC 57.025 29.630 0.00 0.00 0.00 4.46
3090 5933 5.900425 ACTCATATATCGAAGCTAGGCATG 58.100 41.667 0.00 0.00 0.00 4.06
3186 6029 9.755804 CTTGTCTATAGAGCAATGATGAAACTA 57.244 33.333 1.64 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.