Multiple sequence alignment - TraesCS6A01G105200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G105200 chr6A 100.000 3080 0 0 1 3080 73687868 73684789 0.000000e+00 5688.0
1 TraesCS6A01G105200 chr6A 90.485 1093 62 15 2018 3080 73695465 73694385 0.000000e+00 1404.0
2 TraesCS6A01G105200 chr6A 92.410 975 54 4 1532 2493 73696436 73695469 0.000000e+00 1373.0
3 TraesCS6A01G105200 chr6A 86.890 656 63 7 888 1536 73702420 73701781 0.000000e+00 713.0
4 TraesCS6A01G105200 chr6A 71.848 1055 248 29 1008 2045 73837311 73838333 1.100000e-64 257.0
5 TraesCS6A01G105200 chr6A 78.037 214 34 11 1349 1557 73653980 73653775 4.170000e-24 122.0
6 TraesCS6A01G105200 chr6D 91.549 2331 147 20 778 3080 58466832 58464524 0.000000e+00 3168.0
7 TraesCS6A01G105200 chr6D 82.640 962 113 26 1453 2371 58527278 58526328 0.000000e+00 802.0
8 TraesCS6A01G105200 chr6D 80.906 309 52 7 1123 1426 58528780 58528474 1.430000e-58 237.0
9 TraesCS6A01G105200 chr6D 79.273 275 49 7 473 742 18495598 18495327 5.240000e-43 185.0
10 TraesCS6A01G105200 chr6B 90.240 2254 152 21 853 3080 132108803 132106592 0.000000e+00 2881.0
11 TraesCS6A01G105200 chr6B 84.100 478 69 5 1237 1709 132116948 132116473 3.620000e-124 455.0
12 TraesCS6A01G105200 chr6B 87.179 234 28 1 1704 1935 132112463 132112230 6.550000e-67 265.0
13 TraesCS6A01G105200 chr6B 71.608 1113 263 32 950 2045 132161778 132162854 3.940000e-64 255.0
14 TraesCS6A01G105200 chr6B 78.451 297 55 9 486 777 18338176 18338468 5.240000e-43 185.0
15 TraesCS6A01G105200 chr6B 75.610 205 30 12 2403 2590 49946727 49946928 1.970000e-12 84.2
16 TraesCS6A01G105200 chr6B 91.837 49 3 1 2550 2597 127116482 127116434 1.980000e-07 67.6
17 TraesCS6A01G105200 chr6B 100.000 28 0 0 2563 2590 30313195 30313168 6.000000e-03 52.8
18 TraesCS6A01G105200 chr7B 79.032 310 53 11 475 778 57189080 57189383 5.210000e-48 202.0
19 TraesCS6A01G105200 chr7B 79.496 278 48 8 471 742 740074113 740073839 4.050000e-44 189.0
20 TraesCS6A01G105200 chr2B 80.292 274 46 7 474 742 72827901 72827631 1.870000e-47 200.0
21 TraesCS6A01G105200 chr4A 78.451 297 56 7 483 774 110641198 110641491 1.460000e-43 187.0
22 TraesCS6A01G105200 chr7A 78.671 286 52 8 473 752 75396175 75395893 6.780000e-42 182.0
23 TraesCS6A01G105200 chr2A 77.524 307 63 6 473 775 85287570 85287266 2.440000e-41 180.0
24 TraesCS6A01G105200 chr2A 77.244 312 61 9 472 777 738969200 738969507 1.140000e-39 174.0
25 TraesCS6A01G105200 chr3D 90.000 70 7 0 2629 2698 273565073 273565004 1.180000e-14 91.6
26 TraesCS6A01G105200 chr2D 74.884 215 40 11 2396 2597 406200742 406200955 5.470000e-13 86.1
27 TraesCS6A01G105200 chr3B 75.122 205 37 10 2404 2597 162219736 162219535 1.970000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G105200 chr6A 73684789 73687868 3079 True 5688.0 5688 100.0000 1 3080 1 chr6A.!!$R2 3079
1 TraesCS6A01G105200 chr6A 73694385 73696436 2051 True 1388.5 1404 91.4475 1532 3080 2 chr6A.!!$R4 1548
2 TraesCS6A01G105200 chr6A 73701781 73702420 639 True 713.0 713 86.8900 888 1536 1 chr6A.!!$R3 648
3 TraesCS6A01G105200 chr6A 73837311 73838333 1022 False 257.0 257 71.8480 1008 2045 1 chr6A.!!$F1 1037
4 TraesCS6A01G105200 chr6D 58464524 58466832 2308 True 3168.0 3168 91.5490 778 3080 1 chr6D.!!$R2 2302
5 TraesCS6A01G105200 chr6D 58526328 58528780 2452 True 519.5 802 81.7730 1123 2371 2 chr6D.!!$R3 1248
6 TraesCS6A01G105200 chr6B 132106592 132112463 5871 True 1573.0 2881 88.7095 853 3080 2 chr6B.!!$R4 2227
7 TraesCS6A01G105200 chr6B 132161778 132162854 1076 False 255.0 255 71.6080 950 2045 1 chr6B.!!$F3 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 705 0.034896 AAAGGTAGGGTCTGCGTGTG 59.965 55.0 0.00 0.0 0.00 3.82 F
1333 4201 0.031585 CTCGTCCACTTCGTTGGTCA 59.968 55.0 1.34 0.0 37.93 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 5793 0.599204 TTTGTGGTCTCTTCCGTCGC 60.599 55.000 0.0 0.0 0.0 5.19 R
2781 7405 1.346068 GTATGAGGGTCAGGGCATCTC 59.654 57.143 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.512516 GCTGCCATCGGAACCAGC 61.513 66.667 10.63 10.63 43.10 4.85
19 20 2.046023 CTGCCATCGGAACCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
21 22 3.134127 GCCATCGGAACCAGCACC 61.134 66.667 0.00 0.00 0.00 5.01
22 23 2.350895 CCATCGGAACCAGCACCA 59.649 61.111 0.00 0.00 0.00 4.17
23 24 1.746615 CCATCGGAACCAGCACCAG 60.747 63.158 0.00 0.00 0.00 4.00
35 36 2.124983 CACCAGTGCCGGATCCAG 60.125 66.667 13.41 0.36 0.00 3.86
36 37 4.101448 ACCAGTGCCGGATCCAGC 62.101 66.667 13.39 13.39 0.00 4.85
40 41 4.467084 GTGCCGGATCCAGCGGAA 62.467 66.667 15.20 0.10 34.34 4.30
41 42 3.711814 TGCCGGATCCAGCGGAAA 61.712 61.111 15.20 0.00 34.34 3.13
42 43 2.897350 GCCGGATCCAGCGGAAAG 60.897 66.667 13.41 0.00 34.34 2.62
44 45 2.203070 CGGATCCAGCGGAAAGGG 60.203 66.667 13.41 0.00 34.34 3.95
47 48 1.821332 GATCCAGCGGAAAGGGCAG 60.821 63.158 1.44 0.00 34.34 4.85
50 51 4.729918 CAGCGGAAAGGGCAGCCT 62.730 66.667 12.43 0.00 0.00 4.58
51 52 4.416738 AGCGGAAAGGGCAGCCTC 62.417 66.667 12.43 0.18 0.00 4.70
52 53 4.416738 GCGGAAAGGGCAGCCTCT 62.417 66.667 12.43 3.77 0.00 3.69
54 55 2.044551 GGAAAGGGCAGCCTCTGG 60.045 66.667 12.43 0.00 31.21 3.86
55 56 2.606587 GGAAAGGGCAGCCTCTGGA 61.607 63.158 12.43 0.00 31.21 3.86
56 57 1.077858 GAAAGGGCAGCCTCTGGAG 60.078 63.158 12.43 0.00 31.21 3.86
61 62 4.828925 GCAGCCTCTGGAGCGTCC 62.829 72.222 0.00 0.00 36.96 4.79
69 70 2.989639 TGGAGCGTCCAATGGGAG 59.010 61.111 0.00 0.00 45.00 4.30
70 71 2.514824 GGAGCGTCCAATGGGAGC 60.515 66.667 10.90 10.90 46.12 4.70
79 80 4.162690 AATGGGAGCCGCCGAGTC 62.163 66.667 0.00 0.00 37.63 3.36
81 82 3.733507 ATGGGAGCCGCCGAGTCTA 62.734 63.158 0.00 0.00 37.63 2.59
82 83 3.597728 GGGAGCCGCCGAGTCTAG 61.598 72.222 0.00 0.00 37.63 2.43
83 84 2.516460 GGAGCCGCCGAGTCTAGA 60.516 66.667 0.00 0.00 0.00 2.43
84 85 2.548295 GGAGCCGCCGAGTCTAGAG 61.548 68.421 0.00 0.00 0.00 2.43
85 86 1.820481 GAGCCGCCGAGTCTAGAGT 60.820 63.158 0.00 0.00 0.00 3.24
86 87 1.378124 GAGCCGCCGAGTCTAGAGTT 61.378 60.000 0.56 0.00 0.00 3.01
87 88 1.226717 GCCGCCGAGTCTAGAGTTG 60.227 63.158 7.76 7.76 0.00 3.16
90 91 1.817209 GCCGAGTCTAGAGTTGGGG 59.183 63.158 28.34 18.15 36.09 4.96
91 92 0.683504 GCCGAGTCTAGAGTTGGGGA 60.684 60.000 28.34 0.00 36.09 4.81
92 93 1.848652 CCGAGTCTAGAGTTGGGGAA 58.151 55.000 22.30 0.00 32.62 3.97
94 95 2.620886 CCGAGTCTAGAGTTGGGGAAGA 60.621 54.545 22.30 0.00 32.62 2.87
95 96 2.685897 CGAGTCTAGAGTTGGGGAAGAG 59.314 54.545 6.90 0.00 0.00 2.85
96 97 2.429250 GAGTCTAGAGTTGGGGAAGAGC 59.571 54.545 0.56 0.00 0.00 4.09
97 98 1.135333 GTCTAGAGTTGGGGAAGAGCG 59.865 57.143 0.00 0.00 0.00 5.03
98 99 0.179097 CTAGAGTTGGGGAAGAGCGC 60.179 60.000 0.00 0.00 0.00 5.92
116 117 1.595382 CCGCGCAGAAAGGGGATAG 60.595 63.158 8.75 0.00 43.49 2.08
118 119 0.876342 CGCGCAGAAAGGGGATAGAC 60.876 60.000 8.75 0.00 0.00 2.59
119 120 0.876342 GCGCAGAAAGGGGATAGACG 60.876 60.000 0.30 0.00 0.00 4.18
120 121 0.249489 CGCAGAAAGGGGATAGACGG 60.249 60.000 0.00 0.00 0.00 4.79
121 122 1.120530 GCAGAAAGGGGATAGACGGA 58.879 55.000 0.00 0.00 0.00 4.69
123 124 2.667470 CAGAAAGGGGATAGACGGAGA 58.333 52.381 0.00 0.00 0.00 3.71
124 125 2.362717 CAGAAAGGGGATAGACGGAGAC 59.637 54.545 0.00 0.00 0.00 3.36
125 126 1.687660 GAAAGGGGATAGACGGAGACC 59.312 57.143 0.00 0.00 0.00 3.85
127 128 0.186386 AGGGGATAGACGGAGACCAG 59.814 60.000 0.00 0.00 0.00 4.00
128 129 0.185416 GGGGATAGACGGAGACCAGA 59.815 60.000 0.00 0.00 0.00 3.86
129 130 1.611519 GGGATAGACGGAGACCAGAG 58.388 60.000 0.00 0.00 0.00 3.35
130 131 0.955905 GGATAGACGGAGACCAGAGC 59.044 60.000 0.00 0.00 0.00 4.09
131 132 0.589223 GATAGACGGAGACCAGAGCG 59.411 60.000 0.00 0.00 0.00 5.03
132 133 0.180642 ATAGACGGAGACCAGAGCGA 59.819 55.000 0.00 0.00 0.00 4.93
133 134 0.462225 TAGACGGAGACCAGAGCGAG 60.462 60.000 0.00 0.00 0.00 5.03
134 135 2.752238 ACGGAGACCAGAGCGAGG 60.752 66.667 0.00 0.00 0.00 4.63
136 137 2.363147 GGAGACCAGAGCGAGGGT 60.363 66.667 0.00 0.00 40.96 4.34
137 138 1.985116 GGAGACCAGAGCGAGGGTT 60.985 63.158 0.00 0.00 37.57 4.11
138 139 0.683504 GGAGACCAGAGCGAGGGTTA 60.684 60.000 0.00 0.00 37.57 2.85
140 141 0.684805 AGACCAGAGCGAGGGTTAGG 60.685 60.000 0.00 0.00 37.57 2.69
142 143 1.381327 CCAGAGCGAGGGTTAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
143 144 1.395826 CCAGAGCGAGGGTTAGGGAG 61.396 65.000 0.00 0.00 0.00 4.30
144 145 1.758906 AGAGCGAGGGTTAGGGAGC 60.759 63.158 0.00 0.00 0.00 4.70
146 147 3.459063 GCGAGGGTTAGGGAGCGT 61.459 66.667 0.00 0.00 0.00 5.07
149 150 1.684734 GAGGGTTAGGGAGCGTGGA 60.685 63.158 0.00 0.00 0.00 4.02
150 151 1.677637 GAGGGTTAGGGAGCGTGGAG 61.678 65.000 0.00 0.00 0.00 3.86
151 152 2.732619 GGGTTAGGGAGCGTGGAGG 61.733 68.421 0.00 0.00 0.00 4.30
153 154 2.365105 TTAGGGAGCGTGGAGGGG 60.365 66.667 0.00 0.00 0.00 4.79
154 155 3.995809 TTAGGGAGCGTGGAGGGGG 62.996 68.421 0.00 0.00 0.00 5.40
158 159 3.917760 GAGCGTGGAGGGGGATCG 61.918 72.222 0.00 0.00 0.00 3.69
162 163 2.190578 GTGGAGGGGGATCGCAAG 59.809 66.667 12.32 0.00 0.00 4.01
163 164 3.797353 TGGAGGGGGATCGCAAGC 61.797 66.667 12.32 0.00 37.18 4.01
183 184 4.918201 GGATGGCGCGAGGGGAAG 62.918 72.222 12.10 0.00 0.00 3.46
205 206 4.692475 GCCGCTACCAACCACCGT 62.692 66.667 0.00 0.00 0.00 4.83
206 207 2.740826 CCGCTACCAACCACCGTG 60.741 66.667 0.00 0.00 0.00 4.94
208 209 2.359478 GCTACCAACCACCGTGGG 60.359 66.667 21.77 6.63 43.37 4.61
209 210 2.349755 CTACCAACCACCGTGGGG 59.650 66.667 21.77 15.72 43.37 4.96
256 257 4.465446 CGGGGGAGGAGAGAGCCA 62.465 72.222 0.00 0.00 0.00 4.75
258 259 2.445654 GGGGAGGAGAGAGCCAGG 60.446 72.222 0.00 0.00 0.00 4.45
260 261 1.457455 GGGAGGAGAGAGCCAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
261 262 1.457455 GGAGGAGAGAGCCAGGAGG 60.457 68.421 0.00 0.00 38.23 4.30
262 263 1.618030 GAGGAGAGAGCCAGGAGGA 59.382 63.158 0.00 0.00 36.89 3.71
263 264 0.468029 GAGGAGAGAGCCAGGAGGAG 60.468 65.000 0.00 0.00 36.89 3.69
264 265 1.457455 GGAGAGAGCCAGGAGGAGG 60.457 68.421 0.00 0.00 36.89 4.30
271 272 4.120755 CCAGGAGGAGGGGCTTGC 62.121 72.222 0.00 0.00 36.89 4.01
272 273 3.333219 CAGGAGGAGGGGCTTGCA 61.333 66.667 0.00 0.00 0.00 4.08
273 274 3.334054 AGGAGGAGGGGCTTGCAC 61.334 66.667 0.00 0.00 0.00 4.57
275 276 4.785453 GAGGAGGGGCTTGCACGG 62.785 72.222 0.00 0.00 0.00 4.94
289 290 4.446413 ACGGCGGCTAGGGTTTCG 62.446 66.667 13.24 0.00 0.00 3.46
320 321 4.225340 CGAGGAGGACGACGCGAG 62.225 72.222 15.93 9.24 0.00 5.03
340 341 3.721706 GGAGGGTGGTGGCCTCAG 61.722 72.222 3.32 0.00 32.77 3.35
341 342 4.416738 GAGGGTGGTGGCCTCAGC 62.417 72.222 16.78 16.78 41.42 4.26
342 343 4.990910 AGGGTGGTGGCCTCAGCT 62.991 66.667 21.67 10.18 41.59 4.24
343 344 3.009115 GGGTGGTGGCCTCAGCTA 61.009 66.667 21.67 0.20 41.59 3.32
344 345 2.586792 GGTGGTGGCCTCAGCTAG 59.413 66.667 17.46 0.00 41.59 3.42
359 360 2.104170 AGCTAGGCTGTCTTCACTACC 58.896 52.381 0.00 0.00 37.57 3.18
360 361 2.104170 GCTAGGCTGTCTTCACTACCT 58.896 52.381 0.00 0.00 34.17 3.08
361 362 2.100087 GCTAGGCTGTCTTCACTACCTC 59.900 54.545 0.00 0.00 32.57 3.85
362 363 1.562783 AGGCTGTCTTCACTACCTCC 58.437 55.000 0.00 0.00 0.00 4.30
363 364 1.077993 AGGCTGTCTTCACTACCTCCT 59.922 52.381 0.00 0.00 0.00 3.69
364 365 1.478916 GGCTGTCTTCACTACCTCCTC 59.521 57.143 0.00 0.00 0.00 3.71
367 368 3.379057 GCTGTCTTCACTACCTCCTCTAC 59.621 52.174 0.00 0.00 0.00 2.59
368 369 4.850680 CTGTCTTCACTACCTCCTCTACT 58.149 47.826 0.00 0.00 0.00 2.57
369 370 4.590918 TGTCTTCACTACCTCCTCTACTG 58.409 47.826 0.00 0.00 0.00 2.74
371 372 4.637091 GTCTTCACTACCTCCTCTACTGTC 59.363 50.000 0.00 0.00 0.00 3.51
374 375 3.200385 TCACTACCTCCTCTACTGTCTCC 59.800 52.174 0.00 0.00 0.00 3.71
376 377 3.457012 ACTACCTCCTCTACTGTCTCCTC 59.543 52.174 0.00 0.00 0.00 3.71
377 378 2.280103 ACCTCCTCTACTGTCTCCTCA 58.720 52.381 0.00 0.00 0.00 3.86
378 379 2.241176 ACCTCCTCTACTGTCTCCTCAG 59.759 54.545 0.00 0.00 40.80 3.35
379 380 2.297701 CTCCTCTACTGTCTCCTCAGC 58.702 57.143 0.00 0.00 38.84 4.26
380 381 1.636003 TCCTCTACTGTCTCCTCAGCA 59.364 52.381 0.00 0.00 38.84 4.41
382 383 2.426738 CCTCTACTGTCTCCTCAGCAAG 59.573 54.545 0.00 0.00 38.84 4.01
383 384 1.821753 TCTACTGTCTCCTCAGCAAGC 59.178 52.381 0.00 0.00 38.84 4.01
384 385 0.898320 TACTGTCTCCTCAGCAAGCC 59.102 55.000 0.00 0.00 38.84 4.35
386 387 0.035881 CTGTCTCCTCAGCAAGCCAA 59.964 55.000 0.00 0.00 0.00 4.52
387 388 0.250467 TGTCTCCTCAGCAAGCCAAC 60.250 55.000 0.00 0.00 0.00 3.77
389 390 0.694771 TCTCCTCAGCAAGCCAACAT 59.305 50.000 0.00 0.00 0.00 2.71
390 391 0.809385 CTCCTCAGCAAGCCAACATG 59.191 55.000 0.00 0.00 0.00 3.21
391 392 1.214589 CCTCAGCAAGCCAACATGC 59.785 57.895 0.00 0.00 40.80 4.06
394 395 0.970640 TCAGCAAGCCAACATGCATT 59.029 45.000 0.00 0.00 42.93 3.56
396 397 2.561858 TCAGCAAGCCAACATGCATTAA 59.438 40.909 0.00 0.00 42.93 1.40
398 399 3.123959 CAGCAAGCCAACATGCATTAAAC 59.876 43.478 0.00 0.00 42.93 2.01
399 400 3.007182 AGCAAGCCAACATGCATTAAACT 59.993 39.130 0.00 0.00 42.93 2.66
401 402 4.213906 GCAAGCCAACATGCATTAAACTTT 59.786 37.500 0.00 0.00 40.23 2.66
404 405 5.857268 AGCCAACATGCATTAAACTTTCTT 58.143 33.333 0.00 0.00 0.00 2.52
405 406 6.290605 AGCCAACATGCATTAAACTTTCTTT 58.709 32.000 0.00 0.00 0.00 2.52
406 407 6.424812 AGCCAACATGCATTAAACTTTCTTTC 59.575 34.615 0.00 0.00 0.00 2.62
408 409 7.095102 GCCAACATGCATTAAACTTTCTTTCAT 60.095 33.333 0.00 0.00 0.00 2.57
409 410 9.421806 CCAACATGCATTAAACTTTCTTTCATA 57.578 29.630 0.00 0.00 0.00 2.15
422 423 8.974060 ACTTTCTTTCATAAGTAGGTTTGTCA 57.026 30.769 0.00 0.00 33.06 3.58
427 428 9.162764 TCTTTCATAAGTAGGTTTGTCATTAGC 57.837 33.333 0.00 0.00 32.98 3.09
428 429 7.534085 TTCATAAGTAGGTTTGTCATTAGCG 57.466 36.000 0.00 0.00 0.00 4.26
430 431 6.755141 TCATAAGTAGGTTTGTCATTAGCGAC 59.245 38.462 0.00 0.00 36.40 5.19
433 434 2.423577 AGGTTTGTCATTAGCGACACC 58.576 47.619 0.00 0.00 45.36 4.16
434 435 2.147958 GGTTTGTCATTAGCGACACCA 58.852 47.619 0.00 0.00 45.36 4.17
436 437 3.190535 GGTTTGTCATTAGCGACACCAAT 59.809 43.478 0.00 0.00 45.36 3.16
437 438 4.393680 GGTTTGTCATTAGCGACACCAATA 59.606 41.667 0.00 0.00 45.36 1.90
438 439 5.106475 GGTTTGTCATTAGCGACACCAATAA 60.106 40.000 0.00 0.00 45.36 1.40
439 440 5.794687 TTGTCATTAGCGACACCAATAAG 57.205 39.130 0.00 0.00 45.36 1.73
440 441 4.188462 TGTCATTAGCGACACCAATAAGG 58.812 43.478 0.00 0.00 40.94 2.69
455 456 5.462405 CCAATAAGGTGACTAGTATCGAGC 58.538 45.833 0.00 0.00 42.68 5.03
457 458 6.294787 CCAATAAGGTGACTAGTATCGAGCAT 60.295 42.308 0.00 0.00 42.68 3.79
458 459 7.094334 CCAATAAGGTGACTAGTATCGAGCATA 60.094 40.741 0.00 0.00 42.68 3.14
459 460 7.997773 ATAAGGTGACTAGTATCGAGCATAA 57.002 36.000 0.00 0.00 42.68 1.90
460 461 6.902771 AAGGTGACTAGTATCGAGCATAAT 57.097 37.500 0.00 0.00 42.68 1.28
461 462 6.260870 AGGTGACTAGTATCGAGCATAATG 57.739 41.667 0.00 0.00 40.61 1.90
462 463 5.184096 AGGTGACTAGTATCGAGCATAATGG 59.816 44.000 0.00 0.00 40.61 3.16
463 464 5.183331 GGTGACTAGTATCGAGCATAATGGA 59.817 44.000 0.00 0.00 0.00 3.41
464 465 6.087522 GTGACTAGTATCGAGCATAATGGAC 58.912 44.000 0.00 0.00 0.00 4.02
465 466 5.183331 TGACTAGTATCGAGCATAATGGACC 59.817 44.000 0.00 0.00 0.00 4.46
468 469 2.910688 ATCGAGCATAATGGACCGTT 57.089 45.000 3.96 3.96 0.00 4.44
469 470 2.684001 TCGAGCATAATGGACCGTTT 57.316 45.000 3.77 0.00 0.00 3.60
470 471 2.980568 TCGAGCATAATGGACCGTTTT 58.019 42.857 3.77 0.00 0.00 2.43
471 472 2.675844 TCGAGCATAATGGACCGTTTTG 59.324 45.455 3.77 8.33 0.00 2.44
473 474 1.476488 AGCATAATGGACCGTTTTGGC 59.524 47.619 15.95 11.90 43.94 4.52
475 476 1.740585 CATAATGGACCGTTTTGGCGA 59.259 47.619 3.77 0.00 43.94 5.54
477 478 0.312729 AATGGACCGTTTTGGCGAAC 59.687 50.000 0.00 0.00 43.94 3.95
478 479 1.520600 ATGGACCGTTTTGGCGAACC 61.521 55.000 0.00 0.00 43.94 3.62
503 504 7.483307 CAATATGTGGTTGGATGGTTAGAAAG 58.517 38.462 0.00 0.00 0.00 2.62
504 505 4.715534 TGTGGTTGGATGGTTAGAAAGA 57.284 40.909 0.00 0.00 0.00 2.52
505 506 4.394729 TGTGGTTGGATGGTTAGAAAGAC 58.605 43.478 0.00 0.00 0.00 3.01
506 507 4.141367 TGTGGTTGGATGGTTAGAAAGACA 60.141 41.667 0.00 0.00 0.00 3.41
507 508 4.455877 GTGGTTGGATGGTTAGAAAGACAG 59.544 45.833 0.00 0.00 0.00 3.51
508 509 4.104102 TGGTTGGATGGTTAGAAAGACAGT 59.896 41.667 0.00 0.00 0.00 3.55
510 511 5.305585 GTTGGATGGTTAGAAAGACAGTGA 58.694 41.667 0.00 0.00 0.00 3.41
512 513 6.867519 TGGATGGTTAGAAAGACAGTGATA 57.132 37.500 0.00 0.00 0.00 2.15
514 515 7.103641 TGGATGGTTAGAAAGACAGTGATAAC 58.896 38.462 0.00 0.00 0.00 1.89
516 517 5.801380 TGGTTAGAAAGACAGTGATAACCC 58.199 41.667 0.00 0.00 40.82 4.11
517 518 5.546499 TGGTTAGAAAGACAGTGATAACCCT 59.454 40.000 0.00 0.00 40.82 4.34
518 519 6.727231 TGGTTAGAAAGACAGTGATAACCCTA 59.273 38.462 0.00 0.00 40.82 3.53
519 520 7.093465 TGGTTAGAAAGACAGTGATAACCCTAG 60.093 40.741 0.00 0.00 40.82 3.02
520 521 5.346181 AGAAAGACAGTGATAACCCTAGC 57.654 43.478 0.00 0.00 0.00 3.42
521 522 5.026790 AGAAAGACAGTGATAACCCTAGCT 58.973 41.667 0.00 0.00 0.00 3.32
522 523 5.128008 AGAAAGACAGTGATAACCCTAGCTC 59.872 44.000 0.00 0.00 0.00 4.09
524 525 4.551671 AGACAGTGATAACCCTAGCTCAT 58.448 43.478 0.00 0.00 0.00 2.90
525 526 4.965532 AGACAGTGATAACCCTAGCTCATT 59.034 41.667 0.00 0.00 0.00 2.57
526 527 6.136857 AGACAGTGATAACCCTAGCTCATTA 58.863 40.000 0.00 0.00 0.00 1.90
527 528 6.266558 AGACAGTGATAACCCTAGCTCATTAG 59.733 42.308 0.00 0.00 0.00 1.73
528 529 5.305644 ACAGTGATAACCCTAGCTCATTAGG 59.694 44.000 0.00 0.00 39.99 2.69
536 537 4.762289 CCTAGCTCATTAGGGTTCAAGT 57.238 45.455 0.00 0.00 37.20 3.16
537 538 5.871396 CCTAGCTCATTAGGGTTCAAGTA 57.129 43.478 0.00 0.00 37.20 2.24
539 540 5.364157 CCTAGCTCATTAGGGTTCAAGTACT 59.636 44.000 0.00 0.00 37.20 2.73
541 542 6.869206 AGCTCATTAGGGTTCAAGTACTAA 57.131 37.500 0.00 0.00 0.00 2.24
542 543 7.439108 AGCTCATTAGGGTTCAAGTACTAAT 57.561 36.000 0.00 0.00 36.78 1.73
544 545 6.017852 GCTCATTAGGGTTCAAGTACTAATGC 60.018 42.308 14.96 4.80 46.12 3.56
546 547 7.272978 TCATTAGGGTTCAAGTACTAATGCTC 58.727 38.462 14.96 0.00 46.12 4.26
547 548 4.124851 AGGGTTCAAGTACTAATGCTCG 57.875 45.455 0.00 0.00 0.00 5.03
548 549 2.608090 GGGTTCAAGTACTAATGCTCGC 59.392 50.000 0.00 0.00 0.00 5.03
549 550 3.259064 GGTTCAAGTACTAATGCTCGCA 58.741 45.455 0.00 0.00 0.00 5.10
551 552 4.332819 GGTTCAAGTACTAATGCTCGCATT 59.667 41.667 19.60 19.60 46.85 3.56
553 554 6.202954 GGTTCAAGTACTAATGCTCGCATTAT 59.797 38.462 20.79 14.49 44.69 1.28
554 555 7.254795 GGTTCAAGTACTAATGCTCGCATTATT 60.255 37.037 20.79 18.05 44.69 1.40
556 557 7.851508 TCAAGTACTAATGCTCGCATTATTTC 58.148 34.615 20.79 14.50 44.69 2.17
557 558 7.710907 TCAAGTACTAATGCTCGCATTATTTCT 59.289 33.333 20.79 16.07 44.69 2.52
558 559 7.413475 AGTACTAATGCTCGCATTATTTCTG 57.587 36.000 20.79 13.10 44.69 3.02
560 561 5.368145 ACTAATGCTCGCATTATTTCTGGA 58.632 37.500 20.79 2.85 44.69 3.86
561 562 6.000219 ACTAATGCTCGCATTATTTCTGGAT 59.000 36.000 20.79 0.00 44.69 3.41
562 563 5.779529 AATGCTCGCATTATTTCTGGATT 57.220 34.783 14.92 0.00 43.92 3.01
563 564 5.779529 ATGCTCGCATTATTTCTGGATTT 57.220 34.783 0.00 0.00 31.82 2.17
565 566 6.882610 TGCTCGCATTATTTCTGGATTTAT 57.117 33.333 0.00 0.00 0.00 1.40
566 567 7.275888 TGCTCGCATTATTTCTGGATTTATT 57.724 32.000 0.00 0.00 0.00 1.40
567 568 7.715657 TGCTCGCATTATTTCTGGATTTATTT 58.284 30.769 0.00 0.00 0.00 1.40
568 569 8.196771 TGCTCGCATTATTTCTGGATTTATTTT 58.803 29.630 0.00 0.00 0.00 1.82
569 570 9.677567 GCTCGCATTATTTCTGGATTTATTTTA 57.322 29.630 0.00 0.00 0.00 1.52
581 582 9.712305 TCTGGATTTATTTTAAAATTTTGGCGA 57.288 25.926 18.14 5.76 0.00 5.54
584 585 9.220635 GGATTTATTTTAAAATTTTGGCGATGC 57.779 29.630 18.14 5.17 0.00 3.91
585 586 9.986833 GATTTATTTTAAAATTTTGGCGATGCT 57.013 25.926 18.14 0.00 0.00 3.79
586 587 9.986833 ATTTATTTTAAAATTTTGGCGATGCTC 57.013 25.926 18.14 0.00 0.00 4.26
587 588 5.508124 TTTTAAAATTTTGGCGATGCTCG 57.492 34.783 13.76 1.80 43.89 5.03
591 592 1.164411 ATTTTGGCGATGCTCGTTCA 58.836 45.000 7.27 4.38 42.81 3.18
592 593 0.516877 TTTTGGCGATGCTCGTTCAG 59.483 50.000 7.27 0.00 42.81 3.02
593 594 0.602638 TTTGGCGATGCTCGTTCAGT 60.603 50.000 7.27 0.00 42.81 3.41
595 596 2.456119 GGCGATGCTCGTTCAGTGG 61.456 63.158 7.27 0.00 42.81 4.00
596 597 2.456119 GCGATGCTCGTTCAGTGGG 61.456 63.158 7.27 0.00 42.81 4.61
598 599 0.803768 CGATGCTCGTTCAGTGGGAG 60.804 60.000 0.00 0.00 34.72 4.30
600 601 0.904865 ATGCTCGTTCAGTGGGAGGA 60.905 55.000 8.26 6.28 32.63 3.71
601 602 1.216710 GCTCGTTCAGTGGGAGGAG 59.783 63.158 10.74 10.74 33.45 3.69
602 603 1.251527 GCTCGTTCAGTGGGAGGAGA 61.252 60.000 16.27 0.00 32.57 3.71
603 604 0.528470 CTCGTTCAGTGGGAGGAGAC 59.472 60.000 9.94 0.00 32.57 3.36
604 605 1.213013 CGTTCAGTGGGAGGAGACG 59.787 63.158 0.00 0.00 0.00 4.18
609 610 1.343465 TCAGTGGGAGGAGACGTTTTC 59.657 52.381 0.00 0.00 0.00 2.29
623 624 3.813073 CGTTTTCGTCGACTATAAGGC 57.187 47.619 14.70 2.05 38.65 4.35
624 625 3.173599 CGTTTTCGTCGACTATAAGGCA 58.826 45.455 14.70 0.00 38.65 4.75
625 626 3.795101 CGTTTTCGTCGACTATAAGGCAT 59.205 43.478 14.70 0.00 38.65 4.40
626 627 4.971830 CGTTTTCGTCGACTATAAGGCATA 59.028 41.667 14.70 0.00 38.65 3.14
627 628 5.628193 CGTTTTCGTCGACTATAAGGCATAT 59.372 40.000 14.70 0.00 38.65 1.78
628 629 6.398621 CGTTTTCGTCGACTATAAGGCATATG 60.399 42.308 14.70 0.00 38.65 1.78
629 630 5.700722 TTCGTCGACTATAAGGCATATGT 57.299 39.130 14.70 0.00 0.00 2.29
630 631 5.043189 TCGTCGACTATAAGGCATATGTG 57.957 43.478 14.70 0.00 0.00 3.21
631 632 4.517832 TCGTCGACTATAAGGCATATGTGT 59.482 41.667 14.70 0.00 0.00 3.72
633 634 5.117135 CGTCGACTATAAGGCATATGTGTTG 59.883 44.000 14.70 0.00 0.00 3.33
635 636 6.868864 GTCGACTATAAGGCATATGTGTTGAT 59.131 38.462 8.70 0.00 31.20 2.57
636 637 7.062371 GTCGACTATAAGGCATATGTGTTGATC 59.938 40.741 8.70 0.00 31.20 2.92
638 639 7.600375 CGACTATAAGGCATATGTGTTGATCTT 59.400 37.037 4.29 1.08 0.00 2.40
639 640 8.613060 ACTATAAGGCATATGTGTTGATCTTG 57.387 34.615 4.29 0.00 0.00 3.02
641 642 5.824904 AAGGCATATGTGTTGATCTTGTC 57.175 39.130 4.29 0.00 0.00 3.18
642 643 4.847198 AGGCATATGTGTTGATCTTGTCA 58.153 39.130 4.29 0.00 34.25 3.58
643 644 5.255687 AGGCATATGTGTTGATCTTGTCAA 58.744 37.500 4.29 0.00 44.36 3.18
661 662 3.743396 GTCAATCTCAAGACGATATGCCC 59.257 47.826 0.00 0.00 0.00 5.36
663 664 1.399714 TCTCAAGACGATATGCCCGT 58.600 50.000 0.00 0.00 43.56 5.28
672 673 4.111375 ACGATATGCCCGTCAATCTATC 57.889 45.455 0.00 0.00 34.97 2.08
673 674 3.108881 CGATATGCCCGTCAATCTATCG 58.891 50.000 0.00 0.00 33.85 2.92
674 675 3.427638 CGATATGCCCGTCAATCTATCGT 60.428 47.826 0.00 0.00 35.00 3.73
678 679 2.626266 TGCCCGTCAATCTATCGTATGT 59.374 45.455 0.00 0.00 0.00 2.29
679 680 2.987149 GCCCGTCAATCTATCGTATGTG 59.013 50.000 0.00 0.00 0.00 3.21
680 681 2.987149 CCCGTCAATCTATCGTATGTGC 59.013 50.000 0.00 0.00 0.00 4.57
681 682 3.305403 CCCGTCAATCTATCGTATGTGCT 60.305 47.826 0.00 0.00 0.00 4.40
682 683 4.299155 CCGTCAATCTATCGTATGTGCTT 58.701 43.478 0.00 0.00 0.00 3.91
684 685 6.093404 CCGTCAATCTATCGTATGTGCTTAT 58.907 40.000 0.00 0.00 0.00 1.73
686 687 7.753580 CCGTCAATCTATCGTATGTGCTTATAA 59.246 37.037 0.00 0.00 0.00 0.98
689 690 9.639601 TCAATCTATCGTATGTGCTTATAAAGG 57.360 33.333 0.00 0.00 0.00 3.11
690 691 9.424319 CAATCTATCGTATGTGCTTATAAAGGT 57.576 33.333 0.00 0.00 0.00 3.50
693 694 8.737175 TCTATCGTATGTGCTTATAAAGGTAGG 58.263 37.037 0.00 0.00 0.00 3.18
694 695 6.092955 TCGTATGTGCTTATAAAGGTAGGG 57.907 41.667 0.00 0.00 0.00 3.53
695 696 5.599656 TCGTATGTGCTTATAAAGGTAGGGT 59.400 40.000 0.00 0.00 0.00 4.34
696 697 5.924825 CGTATGTGCTTATAAAGGTAGGGTC 59.075 44.000 0.00 0.00 0.00 4.46
698 699 5.353394 TGTGCTTATAAAGGTAGGGTCTG 57.647 43.478 0.00 0.00 0.00 3.51
699 700 4.127907 GTGCTTATAAAGGTAGGGTCTGC 58.872 47.826 0.00 0.00 0.00 4.26
700 701 3.181469 TGCTTATAAAGGTAGGGTCTGCG 60.181 47.826 0.00 0.00 0.00 5.18
702 703 2.981859 ATAAAGGTAGGGTCTGCGTG 57.018 50.000 0.00 0.00 0.00 5.34
704 705 0.034896 AAAGGTAGGGTCTGCGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
706 707 1.374252 GGTAGGGTCTGCGTGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
710 711 0.393808 AGGGTCTGCGTGTGTGTTTT 60.394 50.000 0.00 0.00 0.00 2.43
711 712 0.454196 GGGTCTGCGTGTGTGTTTTT 59.546 50.000 0.00 0.00 0.00 1.94
712 713 1.671845 GGGTCTGCGTGTGTGTTTTTA 59.328 47.619 0.00 0.00 0.00 1.52
713 714 2.292292 GGGTCTGCGTGTGTGTTTTTAT 59.708 45.455 0.00 0.00 0.00 1.40
715 716 4.378046 GGGTCTGCGTGTGTGTTTTTATAG 60.378 45.833 0.00 0.00 0.00 1.31
716 717 4.449743 GGTCTGCGTGTGTGTTTTTATAGA 59.550 41.667 0.00 0.00 0.00 1.98
717 718 5.389516 GGTCTGCGTGTGTGTTTTTATAGAG 60.390 44.000 0.00 0.00 0.00 2.43
720 721 6.090763 TCTGCGTGTGTGTTTTTATAGAGATG 59.909 38.462 0.00 0.00 0.00 2.90
722 723 6.090763 TGCGTGTGTGTTTTTATAGAGATGAG 59.909 38.462 0.00 0.00 0.00 2.90
723 724 6.090898 GCGTGTGTGTTTTTATAGAGATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
724 725 7.448228 CGTGTGTGTTTTTATAGAGATGAGTG 58.552 38.462 0.00 0.00 0.00 3.51
725 726 7.116376 CGTGTGTGTTTTTATAGAGATGAGTGT 59.884 37.037 0.00 0.00 0.00 3.55
726 727 9.419297 GTGTGTGTTTTTATAGAGATGAGTGTA 57.581 33.333 0.00 0.00 0.00 2.90
729 730 9.098355 TGTGTTTTTATAGAGATGAGTGTATGC 57.902 33.333 0.00 0.00 0.00 3.14
731 732 7.042725 TGTTTTTATAGAGATGAGTGTATGCGC 60.043 37.037 0.00 0.00 0.00 6.09
733 734 4.797800 ATAGAGATGAGTGTATGCGCAT 57.202 40.909 28.23 28.23 0.00 4.73
734 735 5.904362 ATAGAGATGAGTGTATGCGCATA 57.096 39.130 25.78 25.78 0.00 3.14
736 737 5.904362 AGAGATGAGTGTATGCGCATATA 57.096 39.130 31.14 26.17 0.00 0.86
738 739 7.573968 AGAGATGAGTGTATGCGCATATATA 57.426 36.000 31.14 18.91 0.00 0.86
739 740 8.175925 AGAGATGAGTGTATGCGCATATATAT 57.824 34.615 31.14 22.08 0.00 0.86
740 741 8.081025 AGAGATGAGTGTATGCGCATATATATG 58.919 37.037 31.14 17.01 36.78 1.78
741 742 7.945134 AGATGAGTGTATGCGCATATATATGA 58.055 34.615 31.14 16.52 35.75 2.15
742 743 8.416329 AGATGAGTGTATGCGCATATATATGAA 58.584 33.333 31.14 15.06 35.75 2.57
743 744 7.755582 TGAGTGTATGCGCATATATATGAAC 57.244 36.000 31.14 19.26 35.75 3.18
744 745 6.756542 TGAGTGTATGCGCATATATATGAACC 59.243 38.462 31.14 16.06 35.75 3.62
745 746 6.049149 AGTGTATGCGCATATATATGAACCC 58.951 40.000 31.14 15.38 35.75 4.11
746 747 5.236478 GTGTATGCGCATATATATGAACCCC 59.764 44.000 31.14 14.90 35.75 4.95
747 748 4.778213 ATGCGCATATATATGAACCCCT 57.222 40.909 24.02 0.00 35.75 4.79
749 750 3.263170 TGCGCATATATATGAACCCCTGT 59.737 43.478 24.06 0.00 35.75 4.00
750 751 3.623060 GCGCATATATATGAACCCCTGTG 59.377 47.826 24.06 6.00 35.75 3.66
751 752 4.832248 CGCATATATATGAACCCCTGTGT 58.168 43.478 24.06 0.00 35.75 3.72
752 753 4.870426 CGCATATATATGAACCCCTGTGTC 59.130 45.833 24.06 3.36 35.75 3.67
753 754 5.186198 GCATATATATGAACCCCTGTGTCC 58.814 45.833 24.06 0.56 35.75 4.02
754 755 5.745227 CATATATATGAACCCCTGTGTCCC 58.255 45.833 16.44 0.00 35.75 4.46
756 757 2.953093 TATGAACCCCTGTGTCCCTA 57.047 50.000 0.00 0.00 0.00 3.53
757 758 1.584724 ATGAACCCCTGTGTCCCTAG 58.415 55.000 0.00 0.00 0.00 3.02
758 759 0.192566 TGAACCCCTGTGTCCCTAGT 59.807 55.000 0.00 0.00 0.00 2.57
759 760 0.613777 GAACCCCTGTGTCCCTAGTG 59.386 60.000 0.00 0.00 0.00 2.74
761 762 0.104620 ACCCCTGTGTCCCTAGTGTT 60.105 55.000 0.00 0.00 0.00 3.32
762 763 1.064825 CCCCTGTGTCCCTAGTGTTT 58.935 55.000 0.00 0.00 0.00 2.83
763 764 1.423921 CCCCTGTGTCCCTAGTGTTTT 59.576 52.381 0.00 0.00 0.00 2.43
764 765 2.552373 CCCCTGTGTCCCTAGTGTTTTC 60.552 54.545 0.00 0.00 0.00 2.29
766 767 3.181443 CCCTGTGTCCCTAGTGTTTTCTT 60.181 47.826 0.00 0.00 0.00 2.52
768 769 5.455612 CCCTGTGTCCCTAGTGTTTTCTTAA 60.456 44.000 0.00 0.00 0.00 1.85
769 770 6.059484 CCTGTGTCCCTAGTGTTTTCTTAAA 58.941 40.000 0.00 0.00 0.00 1.52
789 790 2.863401 AAAAAGACCGTTCTGTTGCC 57.137 45.000 0.00 0.00 28.82 4.52
791 792 0.182775 AAAGACCGTTCTGTTGCCCT 59.817 50.000 0.00 0.00 29.98 5.19
793 794 1.671379 GACCGTTCTGTTGCCCTCC 60.671 63.158 0.00 0.00 0.00 4.30
795 796 1.376037 CCGTTCTGTTGCCCTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
796 797 1.371183 CGTTCTGTTGCCCTCCTCA 59.629 57.895 0.00 0.00 0.00 3.86
797 798 0.951040 CGTTCTGTTGCCCTCCTCAC 60.951 60.000 0.00 0.00 0.00 3.51
798 799 0.951040 GTTCTGTTGCCCTCCTCACG 60.951 60.000 0.00 0.00 0.00 4.35
799 800 1.407656 TTCTGTTGCCCTCCTCACGT 61.408 55.000 0.00 0.00 0.00 4.49
801 802 1.821061 CTGTTGCCCTCCTCACGTCT 61.821 60.000 0.00 0.00 0.00 4.18
802 803 1.374758 GTTGCCCTCCTCACGTCTG 60.375 63.158 0.00 0.00 0.00 3.51
803 804 1.837051 TTGCCCTCCTCACGTCTGT 60.837 57.895 0.00 0.00 0.00 3.41
817 818 3.839293 ACGTCTGTGATAAGCAAGAGAC 58.161 45.455 0.00 0.00 35.98 3.36
819 820 3.182967 GTCTGTGATAAGCAAGAGACCG 58.817 50.000 0.00 0.00 34.44 4.79
820 821 2.166459 TCTGTGATAAGCAAGAGACCGG 59.834 50.000 0.00 0.00 0.00 5.28
821 822 1.291132 GTGATAAGCAAGAGACCGGC 58.709 55.000 0.00 0.00 0.00 6.13
823 824 1.491505 GATAAGCAAGAGACCGGCGC 61.492 60.000 0.00 0.00 0.00 6.53
825 826 2.835701 TAAGCAAGAGACCGGCGCAG 62.836 60.000 10.83 4.65 0.00 5.18
828 829 3.311110 AAGAGACCGGCGCAGGAA 61.311 61.111 33.66 0.00 34.73 3.36
829 830 2.879233 AAGAGACCGGCGCAGGAAA 61.879 57.895 33.66 0.00 34.73 3.13
830 831 3.119096 GAGACCGGCGCAGGAAAC 61.119 66.667 33.66 21.36 34.73 2.78
834 835 3.055719 CCGGCGCAGGAAACACAT 61.056 61.111 23.19 0.00 0.00 3.21
836 837 2.877691 GGCGCAGGAAACACATCC 59.122 61.111 10.83 0.00 39.96 3.51
837 838 2.480555 GCGCAGGAAACACATCCG 59.519 61.111 0.30 0.00 44.60 4.18
838 839 2.325082 GCGCAGGAAACACATCCGT 61.325 57.895 0.30 0.00 44.60 4.69
841 842 0.727398 GCAGGAAACACATCCGTAGC 59.273 55.000 0.00 0.00 44.60 3.58
842 843 0.999406 CAGGAAACACATCCGTAGCG 59.001 55.000 0.00 0.00 44.60 4.26
843 844 0.892755 AGGAAACACATCCGTAGCGA 59.107 50.000 0.00 0.00 44.60 4.93
844 845 1.480954 AGGAAACACATCCGTAGCGAT 59.519 47.619 0.00 0.00 44.60 4.58
845 846 2.093658 AGGAAACACATCCGTAGCGATT 60.094 45.455 0.00 0.00 44.60 3.34
846 847 3.131577 AGGAAACACATCCGTAGCGATTA 59.868 43.478 0.00 0.00 44.60 1.75
848 849 4.260091 GGAAACACATCCGTAGCGATTAAC 60.260 45.833 0.00 0.00 0.00 2.01
849 850 3.513680 ACACATCCGTAGCGATTAACA 57.486 42.857 0.00 0.00 0.00 2.41
851 852 3.863424 ACACATCCGTAGCGATTAACAAG 59.137 43.478 0.00 0.00 0.00 3.16
852 853 3.863424 CACATCCGTAGCGATTAACAAGT 59.137 43.478 0.00 0.00 0.00 3.16
857 858 3.795101 CCGTAGCGATTAACAAGTACCAG 59.205 47.826 0.00 0.00 0.00 4.00
858 859 3.242248 CGTAGCGATTAACAAGTACCAGC 59.758 47.826 0.00 0.00 0.00 4.85
867 3722 0.744414 CAAGTACCAGCATCCGGGTG 60.744 60.000 11.44 11.44 39.95 4.61
891 3746 1.855978 CTCCGACAAATATACGCGCAA 59.144 47.619 5.73 0.00 0.00 4.85
1012 3875 2.414785 GCCGCCATGGTAACCAAGG 61.415 63.158 14.67 0.00 44.37 3.61
1021 3884 0.696501 GGTAACCAAGGCCTCCTCAA 59.303 55.000 5.23 0.00 30.89 3.02
1074 3937 4.736896 GTCGTCGGCCACTCCACC 62.737 72.222 2.24 0.00 34.01 4.61
1091 3957 2.364632 CACCATCACGGGCAAGATTAA 58.635 47.619 0.00 0.00 40.22 1.40
1156 4022 1.597797 CCTGTACTACCCGAACGGCA 61.598 60.000 7.80 0.00 33.26 5.69
1159 4025 0.737367 GTACTACCCGAACGGCAACC 60.737 60.000 7.80 0.00 33.26 3.77
1164 4030 2.818274 CCGAACGGCAACCCTAGC 60.818 66.667 0.00 0.00 0.00 3.42
1167 4033 1.670083 GAACGGCAACCCTAGCGTT 60.670 57.895 3.67 3.67 33.71 4.84
1251 4117 2.439880 GGCCTACTATTCCTTCTGCCTT 59.560 50.000 0.00 0.00 34.83 4.35
1291 4157 1.813862 CGACAGGGGAGAAGCACAAAA 60.814 52.381 0.00 0.00 0.00 2.44
1296 4162 2.108952 AGGGGAGAAGCACAAAATCAGT 59.891 45.455 0.00 0.00 0.00 3.41
1298 4164 3.321968 GGGGAGAAGCACAAAATCAGTTT 59.678 43.478 0.00 0.00 0.00 2.66
1324 4190 0.317479 CCCGAAGTTCTCGTCCACTT 59.683 55.000 0.56 0.00 46.65 3.16
1325 4193 1.669211 CCCGAAGTTCTCGTCCACTTC 60.669 57.143 0.56 11.14 46.65 3.01
1333 4201 0.031585 CTCGTCCACTTCGTTGGTCA 59.968 55.000 1.34 0.00 37.93 4.02
1365 4233 2.061740 AGTTCGTGAGTAAAGCCGAC 57.938 50.000 0.00 0.00 0.00 4.79
1397 4265 1.204146 GGGTGCCTCAAGGATGACTA 58.796 55.000 0.00 0.00 37.39 2.59
1398 4266 1.771255 GGGTGCCTCAAGGATGACTAT 59.229 52.381 0.00 0.00 37.39 2.12
1401 4269 3.244044 GGTGCCTCAAGGATGACTATCTC 60.244 52.174 0.00 0.00 37.39 2.75
1669 5715 1.210538 AGGAAGCAGCATCCTCATCA 58.789 50.000 13.73 0.00 44.01 3.07
1698 5744 7.378181 ACATAAATGCAAAGGTTTTCGAGATT 58.622 30.769 0.00 0.00 0.00 2.40
1699 5745 7.329226 ACATAAATGCAAAGGTTTTCGAGATTG 59.671 33.333 0.00 0.00 0.00 2.67
1743 5789 1.959985 CGTCTGCCAGAGTCTATGGAT 59.040 52.381 17.94 0.00 40.51 3.41
1747 5793 2.299582 CTGCCAGAGTCTATGGATGAGG 59.700 54.545 17.94 0.00 40.51 3.86
1749 5795 1.271934 CCAGAGTCTATGGATGAGGCG 59.728 57.143 7.84 0.00 40.51 5.52
1780 5826 1.670674 CCACAAACATGGTGCAGCATC 60.671 52.381 27.77 0.00 34.77 3.91
1815 5861 3.591023 TGATCGTTACGCAATGGAAAGA 58.409 40.909 0.00 0.00 0.00 2.52
1835 5881 5.720371 AGACTAAAGCTGATATGCGAGAT 57.280 39.130 0.00 0.00 38.13 2.75
1836 5882 5.468592 AGACTAAAGCTGATATGCGAGATG 58.531 41.667 0.00 0.00 38.13 2.90
1840 5886 2.246469 AGCTGATATGCGAGATGAGGT 58.754 47.619 0.00 0.00 38.13 3.85
1919 5965 0.809385 CATTGTCAGCAGCTCAAGGG 59.191 55.000 0.00 0.00 0.00 3.95
2048 6094 7.201732 CGATATTCTTGGACAAGTTATTGCCTT 60.202 37.037 11.44 0.00 40.27 4.35
2049 6095 9.120538 GATATTCTTGGACAAGTTATTGCCTTA 57.879 33.333 11.44 0.00 40.27 2.69
2050 6096 7.775053 ATTCTTGGACAAGTTATTGCCTTAA 57.225 32.000 11.44 0.00 40.27 1.85
2051 6097 7.775053 TTCTTGGACAAGTTATTGCCTTAAT 57.225 32.000 11.44 0.00 40.27 1.40
2123 6169 4.645535 TCTTGAAAGCAGAAGCACATACT 58.354 39.130 0.00 0.00 45.49 2.12
2153 6228 9.817809 TTGTTGATCTCTATGTATTTACTGGTC 57.182 33.333 0.00 0.00 0.00 4.02
2506 7121 1.775385 TCATAGACCATCCAGCGACA 58.225 50.000 0.00 0.00 0.00 4.35
2613 7228 7.840931 AGCCATCGTATTGTAGATAATGATGA 58.159 34.615 5.22 0.00 35.22 2.92
2781 7405 3.670625 TCGGTTTGGTGAAGATAGTTGG 58.329 45.455 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.134127 GGTGCTGGTTCCGATGGC 61.134 66.667 0.00 0.00 0.00 4.40
5 6 1.746615 CTGGTGCTGGTTCCGATGG 60.747 63.158 0.00 0.00 0.00 3.51
6 7 1.003355 ACTGGTGCTGGTTCCGATG 60.003 57.895 0.00 0.00 0.00 3.84
7 8 1.003355 CACTGGTGCTGGTTCCGAT 60.003 57.895 0.00 0.00 0.00 4.18
8 9 2.425592 CACTGGTGCTGGTTCCGA 59.574 61.111 0.00 0.00 0.00 4.55
18 19 2.124983 CTGGATCCGGCACTGGTG 60.125 66.667 7.89 0.00 0.00 4.17
19 20 4.101448 GCTGGATCCGGCACTGGT 62.101 66.667 36.00 0.00 46.81 4.00
27 28 2.203070 CCCTTTCCGCTGGATCCG 60.203 66.667 7.39 3.14 0.00 4.18
28 29 2.517166 GCCCTTTCCGCTGGATCC 60.517 66.667 4.20 4.20 0.00 3.36
31 32 4.722700 GCTGCCCTTTCCGCTGGA 62.723 66.667 0.00 0.00 0.00 3.86
34 35 4.416738 GAGGCTGCCCTTTCCGCT 62.417 66.667 16.57 0.00 43.12 5.52
35 36 4.416738 AGAGGCTGCCCTTTCCGC 62.417 66.667 16.57 0.00 43.12 5.54
36 37 2.437359 CAGAGGCTGCCCTTTCCG 60.437 66.667 16.57 0.00 43.12 4.30
40 41 3.726144 GCTCCAGAGGCTGCCCTT 61.726 66.667 16.57 0.00 43.12 3.95
44 45 4.828925 GGACGCTCCAGAGGCTGC 62.829 72.222 0.00 0.00 36.28 5.25
52 53 2.989639 CTCCCATTGGACGCTCCA 59.010 61.111 3.62 3.02 46.61 3.86
54 55 2.514824 GGCTCCCATTGGACGCTC 60.515 66.667 3.62 0.00 35.03 5.03
55 56 4.473520 CGGCTCCCATTGGACGCT 62.474 66.667 3.62 0.00 35.03 5.07
61 62 4.473520 ACTCGGCGGCTCCCATTG 62.474 66.667 7.21 0.00 0.00 2.82
64 65 4.435970 TAGACTCGGCGGCTCCCA 62.436 66.667 7.21 0.00 0.00 4.37
65 66 3.597728 CTAGACTCGGCGGCTCCC 61.598 72.222 7.21 0.00 0.00 4.30
66 67 2.516460 TCTAGACTCGGCGGCTCC 60.516 66.667 7.21 0.00 0.00 4.70
69 70 1.226717 CAACTCTAGACTCGGCGGC 60.227 63.158 7.21 0.00 0.00 6.53
70 71 1.433879 CCAACTCTAGACTCGGCGG 59.566 63.158 7.21 0.00 0.00 6.13
73 74 1.751924 CTTCCCCAACTCTAGACTCGG 59.248 57.143 0.00 0.00 0.00 4.63
75 76 2.429250 GCTCTTCCCCAACTCTAGACTC 59.571 54.545 0.00 0.00 0.00 3.36
76 77 2.462723 GCTCTTCCCCAACTCTAGACT 58.537 52.381 0.00 0.00 0.00 3.24
77 78 1.135333 CGCTCTTCCCCAACTCTAGAC 59.865 57.143 0.00 0.00 0.00 2.59
79 80 0.179097 GCGCTCTTCCCCAACTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
80 81 1.614241 GGCGCTCTTCCCCAACTCTA 61.614 60.000 7.64 0.00 0.00 2.43
81 82 2.665603 GCGCTCTTCCCCAACTCT 59.334 61.111 0.00 0.00 0.00 3.24
82 83 2.436824 GGCGCTCTTCCCCAACTC 60.437 66.667 7.64 0.00 0.00 3.01
83 84 4.394712 CGGCGCTCTTCCCCAACT 62.395 66.667 7.64 0.00 0.00 3.16
97 98 3.750373 TATCCCCTTTCTGCGCGGC 62.750 63.158 12.58 0.00 0.00 6.53
98 99 1.595382 CTATCCCCTTTCTGCGCGG 60.595 63.158 10.86 10.86 0.00 6.46
99 100 0.876342 GTCTATCCCCTTTCTGCGCG 60.876 60.000 0.00 0.00 0.00 6.86
100 101 0.876342 CGTCTATCCCCTTTCTGCGC 60.876 60.000 0.00 0.00 0.00 6.09
101 102 0.249489 CCGTCTATCCCCTTTCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
102 103 1.069358 CTCCGTCTATCCCCTTTCTGC 59.931 57.143 0.00 0.00 0.00 4.26
103 104 2.362717 GTCTCCGTCTATCCCCTTTCTG 59.637 54.545 0.00 0.00 0.00 3.02
105 106 1.687660 GGTCTCCGTCTATCCCCTTTC 59.312 57.143 0.00 0.00 0.00 2.62
106 107 1.007963 TGGTCTCCGTCTATCCCCTTT 59.992 52.381 0.00 0.00 0.00 3.11
107 108 0.635009 TGGTCTCCGTCTATCCCCTT 59.365 55.000 0.00 0.00 0.00 3.95
109 110 0.185416 TCTGGTCTCCGTCTATCCCC 59.815 60.000 0.00 0.00 0.00 4.81
110 111 1.611519 CTCTGGTCTCCGTCTATCCC 58.388 60.000 0.00 0.00 0.00 3.85
113 114 0.180642 TCGCTCTGGTCTCCGTCTAT 59.819 55.000 0.00 0.00 0.00 1.98
116 117 2.766400 CCTCGCTCTGGTCTCCGTC 61.766 68.421 0.00 0.00 0.00 4.79
118 119 3.522731 CCCTCGCTCTGGTCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
119 120 0.683504 TAACCCTCGCTCTGGTCTCC 60.684 60.000 0.00 0.00 32.40 3.71
120 121 0.741915 CTAACCCTCGCTCTGGTCTC 59.258 60.000 0.00 0.00 32.40 3.36
121 122 0.684805 CCTAACCCTCGCTCTGGTCT 60.685 60.000 0.00 0.00 32.40 3.85
123 124 1.686110 CCCTAACCCTCGCTCTGGT 60.686 63.158 0.00 0.00 36.06 4.00
124 125 1.381327 TCCCTAACCCTCGCTCTGG 60.381 63.158 0.00 0.00 0.00 3.86
125 126 2.022240 GCTCCCTAACCCTCGCTCTG 62.022 65.000 0.00 0.00 0.00 3.35
127 128 2.816012 GCTCCCTAACCCTCGCTC 59.184 66.667 0.00 0.00 0.00 5.03
128 129 3.148279 CGCTCCCTAACCCTCGCT 61.148 66.667 0.00 0.00 0.00 4.93
129 130 3.459063 ACGCTCCCTAACCCTCGC 61.459 66.667 0.00 0.00 0.00 5.03
130 131 2.494918 CACGCTCCCTAACCCTCG 59.505 66.667 0.00 0.00 0.00 4.63
131 132 1.677637 CTCCACGCTCCCTAACCCTC 61.678 65.000 0.00 0.00 0.00 4.30
132 133 1.686110 CTCCACGCTCCCTAACCCT 60.686 63.158 0.00 0.00 0.00 4.34
133 134 2.732619 CCTCCACGCTCCCTAACCC 61.733 68.421 0.00 0.00 0.00 4.11
134 135 2.732619 CCCTCCACGCTCCCTAACC 61.733 68.421 0.00 0.00 0.00 2.85
136 137 2.365105 CCCCTCCACGCTCCCTAA 60.365 66.667 0.00 0.00 0.00 2.69
137 138 4.475444 CCCCCTCCACGCTCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
140 141 3.551407 GATCCCCCTCCACGCTCC 61.551 72.222 0.00 0.00 0.00 4.70
144 145 3.740128 CTTGCGATCCCCCTCCACG 62.740 68.421 0.00 0.00 0.00 4.94
146 147 3.797353 GCTTGCGATCCCCCTCCA 61.797 66.667 0.00 0.00 0.00 3.86
149 150 3.854669 CTCGCTTGCGATCCCCCT 61.855 66.667 18.05 0.00 0.00 4.79
150 151 4.918201 CCTCGCTTGCGATCCCCC 62.918 72.222 18.05 0.00 0.00 5.40
151 152 3.170490 ATCCTCGCTTGCGATCCCC 62.170 63.158 18.05 0.00 0.00 4.81
153 154 1.958205 CCATCCTCGCTTGCGATCC 60.958 63.158 18.05 0.00 0.00 3.36
154 155 2.602322 GCCATCCTCGCTTGCGATC 61.602 63.158 18.05 0.99 0.00 3.69
155 156 2.590007 GCCATCCTCGCTTGCGAT 60.590 61.111 18.05 0.80 0.00 4.58
189 190 2.740826 CACGGTGGTTGGTAGCGG 60.741 66.667 0.00 0.00 42.74 5.52
190 191 2.740826 CCACGGTGGTTGGTAGCG 60.741 66.667 19.15 0.00 43.90 4.26
191 192 2.359478 CCCACGGTGGTTGGTAGC 60.359 66.667 24.70 0.00 35.17 3.58
192 193 2.349755 CCCCACGGTGGTTGGTAG 59.650 66.667 24.70 8.94 35.17 3.18
193 194 3.250734 CCCCCACGGTGGTTGGTA 61.251 66.667 24.70 0.00 35.17 3.25
239 240 4.465446 TGGCTCTCTCCTCCCCCG 62.465 72.222 0.00 0.00 0.00 5.73
240 241 2.445654 CTGGCTCTCTCCTCCCCC 60.446 72.222 0.00 0.00 0.00 5.40
241 242 2.445654 CCTGGCTCTCTCCTCCCC 60.446 72.222 0.00 0.00 0.00 4.81
244 245 0.468029 CTCCTCCTGGCTCTCTCCTC 60.468 65.000 0.00 0.00 0.00 3.71
245 246 1.620259 CTCCTCCTGGCTCTCTCCT 59.380 63.158 0.00 0.00 0.00 3.69
246 247 1.457455 CCTCCTCCTGGCTCTCTCC 60.457 68.421 0.00 0.00 0.00 3.71
247 248 1.457455 CCCTCCTCCTGGCTCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
248 249 2.695597 CCCTCCTCCTGGCTCTCT 59.304 66.667 0.00 0.00 0.00 3.10
249 250 2.445654 CCCCTCCTCCTGGCTCTC 60.446 72.222 0.00 0.00 0.00 3.20
250 251 4.814041 GCCCCTCCTCCTGGCTCT 62.814 72.222 0.00 0.00 42.01 4.09
253 254 4.120755 CAAGCCCCTCCTCCTGGC 62.121 72.222 0.00 0.00 45.70 4.85
254 255 4.120755 GCAAGCCCCTCCTCCTGG 62.121 72.222 0.00 0.00 0.00 4.45
256 257 3.334054 GTGCAAGCCCCTCCTCCT 61.334 66.667 0.00 0.00 0.00 3.69
258 259 4.785453 CCGTGCAAGCCCCTCCTC 62.785 72.222 0.00 0.00 0.00 3.71
271 272 2.818274 GAAACCCTAGCCGCCGTG 60.818 66.667 0.00 0.00 0.00 4.94
272 273 4.446413 CGAAACCCTAGCCGCCGT 62.446 66.667 0.00 0.00 0.00 5.68
303 304 4.225340 CTCGCGTCGTCCTCCTCG 62.225 72.222 5.77 0.00 0.00 4.63
304 305 3.878519 CCTCGCGTCGTCCTCCTC 61.879 72.222 5.77 0.00 0.00 3.71
323 324 3.721706 CTGAGGCCACCACCCTCC 61.722 72.222 5.01 0.00 46.69 4.30
325 326 3.562681 TAGCTGAGGCCACCACCCT 62.563 63.158 5.01 2.45 39.73 4.34
326 327 3.009115 TAGCTGAGGCCACCACCC 61.009 66.667 5.01 0.00 39.73 4.61
327 328 2.586792 CTAGCTGAGGCCACCACC 59.413 66.667 5.01 0.00 39.73 4.61
328 329 2.586792 CCTAGCTGAGGCCACCAC 59.413 66.667 5.01 0.00 38.96 4.16
339 340 2.104170 GGTAGTGAAGACAGCCTAGCT 58.896 52.381 0.00 0.00 40.77 3.32
340 341 2.100087 GAGGTAGTGAAGACAGCCTAGC 59.900 54.545 0.00 0.00 0.00 3.42
341 342 2.691011 GGAGGTAGTGAAGACAGCCTAG 59.309 54.545 0.00 0.00 0.00 3.02
342 343 2.312140 AGGAGGTAGTGAAGACAGCCTA 59.688 50.000 0.00 0.00 0.00 3.93
343 344 1.077993 AGGAGGTAGTGAAGACAGCCT 59.922 52.381 0.00 0.00 0.00 4.58
344 345 1.478916 GAGGAGGTAGTGAAGACAGCC 59.521 57.143 0.00 0.00 0.00 4.85
345 346 2.452505 AGAGGAGGTAGTGAAGACAGC 58.547 52.381 0.00 0.00 0.00 4.40
347 348 4.043059 ACAGTAGAGGAGGTAGTGAAGACA 59.957 45.833 0.00 0.00 0.00 3.41
348 349 4.591929 ACAGTAGAGGAGGTAGTGAAGAC 58.408 47.826 0.00 0.00 0.00 3.01
350 351 4.850680 AGACAGTAGAGGAGGTAGTGAAG 58.149 47.826 0.00 0.00 0.00 3.02
351 352 4.324408 GGAGACAGTAGAGGAGGTAGTGAA 60.324 50.000 0.00 0.00 0.00 3.18
352 353 3.200385 GGAGACAGTAGAGGAGGTAGTGA 59.800 52.174 0.00 0.00 0.00 3.41
353 354 3.201266 AGGAGACAGTAGAGGAGGTAGTG 59.799 52.174 0.00 0.00 0.00 2.74
354 355 3.457012 GAGGAGACAGTAGAGGAGGTAGT 59.543 52.174 0.00 0.00 0.00 2.73
356 357 3.456644 CTGAGGAGACAGTAGAGGAGGTA 59.543 52.174 0.00 0.00 33.73 3.08
357 358 2.241176 CTGAGGAGACAGTAGAGGAGGT 59.759 54.545 0.00 0.00 33.73 3.85
359 360 2.297701 GCTGAGGAGACAGTAGAGGAG 58.702 57.143 0.00 0.00 39.73 3.69
360 361 1.636003 TGCTGAGGAGACAGTAGAGGA 59.364 52.381 0.00 0.00 39.73 3.71
361 362 2.136298 TGCTGAGGAGACAGTAGAGG 57.864 55.000 0.00 0.00 39.73 3.69
362 363 2.159254 GCTTGCTGAGGAGACAGTAGAG 60.159 54.545 0.00 0.00 39.73 2.43
363 364 1.821753 GCTTGCTGAGGAGACAGTAGA 59.178 52.381 0.00 0.00 39.73 2.59
364 365 1.134848 GGCTTGCTGAGGAGACAGTAG 60.135 57.143 0.00 0.00 39.73 2.57
367 368 0.035881 TTGGCTTGCTGAGGAGACAG 59.964 55.000 0.00 0.00 40.43 3.51
368 369 0.250467 GTTGGCTTGCTGAGGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
369 370 0.250467 TGTTGGCTTGCTGAGGAGAC 60.250 55.000 0.00 0.00 0.00 3.36
371 372 0.809385 CATGTTGGCTTGCTGAGGAG 59.191 55.000 0.00 0.00 0.00 3.69
374 375 0.530744 ATGCATGTTGGCTTGCTGAG 59.469 50.000 0.00 0.00 43.58 3.35
376 377 2.658373 TAATGCATGTTGGCTTGCTG 57.342 45.000 0.00 0.00 43.58 4.41
377 378 3.007182 AGTTTAATGCATGTTGGCTTGCT 59.993 39.130 0.00 0.00 43.58 3.91
378 379 3.328505 AGTTTAATGCATGTTGGCTTGC 58.671 40.909 0.00 0.00 43.51 4.01
379 380 5.697633 AGAAAGTTTAATGCATGTTGGCTTG 59.302 36.000 0.00 0.00 34.04 4.01
380 381 5.857268 AGAAAGTTTAATGCATGTTGGCTT 58.143 33.333 0.00 0.00 34.04 4.35
382 383 6.202570 TGAAAGAAAGTTTAATGCATGTTGGC 59.797 34.615 0.00 0.00 0.00 4.52
383 384 7.712264 TGAAAGAAAGTTTAATGCATGTTGG 57.288 32.000 0.00 0.00 0.00 3.77
396 397 9.403583 TGACAAACCTACTTATGAAAGAAAGTT 57.596 29.630 0.00 0.00 37.19 2.66
401 402 9.162764 GCTAATGACAAACCTACTTATGAAAGA 57.837 33.333 0.00 0.00 36.50 2.52
404 405 7.277098 GTCGCTAATGACAAACCTACTTATGAA 59.723 37.037 0.00 0.00 38.75 2.57
405 406 6.755141 GTCGCTAATGACAAACCTACTTATGA 59.245 38.462 0.00 0.00 38.75 2.15
406 407 6.533723 TGTCGCTAATGACAAACCTACTTATG 59.466 38.462 0.00 0.00 45.40 1.90
408 409 6.028146 TGTCGCTAATGACAAACCTACTTA 57.972 37.500 0.00 0.00 45.40 2.24
409 410 4.890088 TGTCGCTAATGACAAACCTACTT 58.110 39.130 0.00 0.00 45.40 2.24
410 411 4.530710 TGTCGCTAATGACAAACCTACT 57.469 40.909 0.00 0.00 45.40 2.57
419 420 4.795970 CCTTATTGGTGTCGCTAATGAC 57.204 45.455 5.32 0.00 39.37 3.06
433 434 6.073327 TGCTCGATACTAGTCACCTTATTG 57.927 41.667 0.00 0.00 0.00 1.90
434 435 6.902771 ATGCTCGATACTAGTCACCTTATT 57.097 37.500 0.00 0.00 0.00 1.40
436 437 7.094334 CCATTATGCTCGATACTAGTCACCTTA 60.094 40.741 0.00 0.00 0.00 2.69
437 438 6.294787 CCATTATGCTCGATACTAGTCACCTT 60.295 42.308 0.00 0.00 0.00 3.50
438 439 5.184096 CCATTATGCTCGATACTAGTCACCT 59.816 44.000 0.00 0.00 0.00 4.00
439 440 5.183331 TCCATTATGCTCGATACTAGTCACC 59.817 44.000 0.00 0.00 0.00 4.02
440 441 6.087522 GTCCATTATGCTCGATACTAGTCAC 58.912 44.000 0.00 0.00 0.00 3.67
441 442 5.183331 GGTCCATTATGCTCGATACTAGTCA 59.817 44.000 0.00 0.00 0.00 3.41
442 443 5.642686 GGTCCATTATGCTCGATACTAGTC 58.357 45.833 0.00 0.00 0.00 2.59
443 444 4.156190 CGGTCCATTATGCTCGATACTAGT 59.844 45.833 0.00 0.00 0.00 2.57
444 445 4.156190 ACGGTCCATTATGCTCGATACTAG 59.844 45.833 6.96 0.00 0.00 2.57
445 446 4.077108 ACGGTCCATTATGCTCGATACTA 58.923 43.478 6.96 0.00 0.00 1.82
447 448 3.299340 ACGGTCCATTATGCTCGATAC 57.701 47.619 6.96 0.00 0.00 2.24
449 450 2.910688 AACGGTCCATTATGCTCGAT 57.089 45.000 6.96 0.00 0.00 3.59
453 454 1.476488 GCCAAAACGGTCCATTATGCT 59.524 47.619 0.00 0.00 36.97 3.79
454 455 1.797348 CGCCAAAACGGTCCATTATGC 60.797 52.381 0.00 0.00 36.97 3.14
455 456 1.740585 TCGCCAAAACGGTCCATTATG 59.259 47.619 0.00 0.00 36.97 1.90
457 458 1.536331 GTTCGCCAAAACGGTCCATTA 59.464 47.619 0.00 0.00 36.97 1.90
458 459 0.312729 GTTCGCCAAAACGGTCCATT 59.687 50.000 0.00 0.00 36.97 3.16
459 460 1.520600 GGTTCGCCAAAACGGTCCAT 61.521 55.000 0.00 0.00 36.97 3.41
460 461 2.188161 GGTTCGCCAAAACGGTCCA 61.188 57.895 0.00 0.00 36.97 4.02
461 462 2.188161 TGGTTCGCCAAAACGGTCC 61.188 57.895 0.00 0.00 45.88 4.46
462 463 3.423179 TGGTTCGCCAAAACGGTC 58.577 55.556 0.00 0.00 45.88 4.79
478 479 7.339212 TCTTTCTAACCATCCAACCACATATTG 59.661 37.037 0.00 0.00 0.00 1.90
481 482 6.177610 GTCTTTCTAACCATCCAACCACATA 58.822 40.000 0.00 0.00 0.00 2.29
482 483 5.010282 GTCTTTCTAACCATCCAACCACAT 58.990 41.667 0.00 0.00 0.00 3.21
483 484 4.141367 TGTCTTTCTAACCATCCAACCACA 60.141 41.667 0.00 0.00 0.00 4.17
484 485 4.394729 TGTCTTTCTAACCATCCAACCAC 58.605 43.478 0.00 0.00 0.00 4.16
485 486 4.104102 ACTGTCTTTCTAACCATCCAACCA 59.896 41.667 0.00 0.00 0.00 3.67
488 489 5.560722 TCACTGTCTTTCTAACCATCCAA 57.439 39.130 0.00 0.00 0.00 3.53
489 490 5.762179 ATCACTGTCTTTCTAACCATCCA 57.238 39.130 0.00 0.00 0.00 3.41
493 494 5.546499 AGGGTTATCACTGTCTTTCTAACCA 59.454 40.000 10.47 0.00 39.76 3.67
494 495 6.051179 AGGGTTATCACTGTCTTTCTAACC 57.949 41.667 0.00 0.00 38.12 2.85
495 496 6.757478 GCTAGGGTTATCACTGTCTTTCTAAC 59.243 42.308 0.00 0.00 0.00 2.34
497 498 6.195700 AGCTAGGGTTATCACTGTCTTTCTA 58.804 40.000 0.00 0.00 0.00 2.10
498 499 5.026790 AGCTAGGGTTATCACTGTCTTTCT 58.973 41.667 0.00 0.00 0.00 2.52
501 502 4.353777 TGAGCTAGGGTTATCACTGTCTT 58.646 43.478 0.00 0.00 0.00 3.01
503 504 4.946478 ATGAGCTAGGGTTATCACTGTC 57.054 45.455 0.00 0.00 0.00 3.51
504 505 5.305644 CCTAATGAGCTAGGGTTATCACTGT 59.694 44.000 0.00 0.00 35.67 3.55
505 506 5.788450 CCTAATGAGCTAGGGTTATCACTG 58.212 45.833 0.00 0.00 35.67 3.66
516 517 6.472686 AGTACTTGAACCCTAATGAGCTAG 57.527 41.667 0.00 0.00 0.00 3.42
517 518 7.966339 TTAGTACTTGAACCCTAATGAGCTA 57.034 36.000 0.00 0.00 0.00 3.32
518 519 6.869206 TTAGTACTTGAACCCTAATGAGCT 57.131 37.500 0.00 0.00 0.00 4.09
519 520 6.017852 GCATTAGTACTTGAACCCTAATGAGC 60.018 42.308 17.77 4.42 44.76 4.26
520 521 7.275920 AGCATTAGTACTTGAACCCTAATGAG 58.724 38.462 17.77 0.00 44.76 2.90
521 522 7.195374 AGCATTAGTACTTGAACCCTAATGA 57.805 36.000 17.77 0.00 44.76 2.57
522 523 6.201044 CGAGCATTAGTACTTGAACCCTAATG 59.799 42.308 0.00 11.86 44.77 1.90
524 525 5.657474 CGAGCATTAGTACTTGAACCCTAA 58.343 41.667 0.00 0.00 0.00 2.69
525 526 4.441079 GCGAGCATTAGTACTTGAACCCTA 60.441 45.833 0.00 0.00 0.00 3.53
526 527 3.679083 GCGAGCATTAGTACTTGAACCCT 60.679 47.826 0.00 0.00 0.00 4.34
527 528 2.608090 GCGAGCATTAGTACTTGAACCC 59.392 50.000 0.00 0.00 0.00 4.11
528 529 3.259064 TGCGAGCATTAGTACTTGAACC 58.741 45.455 0.00 0.00 0.00 3.62
529 530 5.470845 AATGCGAGCATTAGTACTTGAAC 57.529 39.130 20.27 0.00 43.92 3.18
541 542 5.779529 AAATCCAGAAATAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
542 543 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
558 559 9.220635 GCATCGCCAAAATTTTAAAATAAATCC 57.779 29.630 13.68 3.08 0.00 3.01
560 561 9.986833 GAGCATCGCCAAAATTTTAAAATAAAT 57.013 25.926 13.68 1.52 0.00 1.40
580 581 0.460987 CCTCCCACTGAACGAGCATC 60.461 60.000 0.00 0.00 0.00 3.91
581 582 0.904865 TCCTCCCACTGAACGAGCAT 60.905 55.000 0.00 0.00 0.00 3.79
583 584 1.216710 CTCCTCCCACTGAACGAGC 59.783 63.158 0.00 0.00 0.00 5.03
584 585 0.528470 GTCTCCTCCCACTGAACGAG 59.472 60.000 0.00 0.00 0.00 4.18
585 586 1.241990 CGTCTCCTCCCACTGAACGA 61.242 60.000 0.00 0.00 0.00 3.85
586 587 1.213013 CGTCTCCTCCCACTGAACG 59.787 63.158 0.00 0.00 0.00 3.95
587 588 0.680061 AACGTCTCCTCCCACTGAAC 59.320 55.000 0.00 0.00 0.00 3.18
591 592 0.317479 CGAAAACGTCTCCTCCCACT 59.683 55.000 0.00 0.00 0.00 4.00
592 593 0.033090 ACGAAAACGTCTCCTCCCAC 59.967 55.000 0.00 0.00 0.00 4.61
593 594 0.316204 GACGAAAACGTCTCCTCCCA 59.684 55.000 14.10 0.00 36.12 4.37
595 596 0.239347 TCGACGAAAACGTCTCCTCC 59.761 55.000 17.92 0.00 36.81 4.30
596 597 1.069364 AGTCGACGAAAACGTCTCCTC 60.069 52.381 10.46 7.74 36.81 3.71
598 599 2.601481 TAGTCGACGAAAACGTCTCC 57.399 50.000 10.46 9.73 36.81 3.71
600 601 4.656041 CCTTATAGTCGACGAAAACGTCT 58.344 43.478 10.46 0.00 36.81 4.18
601 602 3.239254 GCCTTATAGTCGACGAAAACGTC 59.761 47.826 10.46 11.84 35.73 4.34
602 603 3.174375 GCCTTATAGTCGACGAAAACGT 58.826 45.455 10.46 0.00 0.00 3.99
603 604 3.173599 TGCCTTATAGTCGACGAAAACG 58.826 45.455 10.46 0.00 0.00 3.60
604 605 6.420008 ACATATGCCTTATAGTCGACGAAAAC 59.580 38.462 10.46 0.00 0.00 2.43
609 610 4.795268 ACACATATGCCTTATAGTCGACG 58.205 43.478 10.46 0.00 0.00 5.12
611 612 6.399639 TCAACACATATGCCTTATAGTCGA 57.600 37.500 1.58 0.00 0.00 4.20
612 613 7.093354 AGATCAACACATATGCCTTATAGTCG 58.907 38.462 1.58 0.00 0.00 4.18
614 615 8.213679 ACAAGATCAACACATATGCCTTATAGT 58.786 33.333 1.58 0.00 0.00 2.12
615 616 8.613060 ACAAGATCAACACATATGCCTTATAG 57.387 34.615 1.58 0.00 0.00 1.31
616 617 8.210265 TGACAAGATCAACACATATGCCTTATA 58.790 33.333 1.58 0.00 33.02 0.98
620 621 4.847198 TGACAAGATCAACACATATGCCT 58.153 39.130 1.58 0.00 33.02 4.75
621 622 5.565592 TTGACAAGATCAACACATATGCC 57.434 39.130 1.58 0.00 42.62 4.40
636 637 5.050499 GGCATATCGTCTTGAGATTGACAAG 60.050 44.000 0.00 0.00 43.92 3.16
638 639 4.371786 GGCATATCGTCTTGAGATTGACA 58.628 43.478 0.00 0.00 33.18 3.58
639 640 3.743396 GGGCATATCGTCTTGAGATTGAC 59.257 47.826 0.00 0.00 0.00 3.18
641 642 2.733552 CGGGCATATCGTCTTGAGATTG 59.266 50.000 0.00 0.00 0.00 2.67
642 643 2.365617 ACGGGCATATCGTCTTGAGATT 59.634 45.455 0.00 0.00 35.87 2.40
643 644 1.964223 ACGGGCATATCGTCTTGAGAT 59.036 47.619 0.00 0.00 35.87 2.75
644 645 1.399714 ACGGGCATATCGTCTTGAGA 58.600 50.000 0.00 0.00 35.87 3.27
645 646 3.967886 ACGGGCATATCGTCTTGAG 57.032 52.632 0.00 0.00 35.87 3.02
650 651 7.603039 ACGATAGATTGACGGGCATATCGTC 62.603 48.000 19.87 9.32 43.66 4.20
652 653 3.108881 CGATAGATTGACGGGCATATCG 58.891 50.000 10.05 10.05 34.87 2.92
653 654 4.111375 ACGATAGATTGACGGGCATATC 57.889 45.455 0.00 0.00 41.38 1.63
655 656 4.461431 ACATACGATAGATTGACGGGCATA 59.539 41.667 0.00 0.00 41.38 3.14
658 659 2.987149 CACATACGATAGATTGACGGGC 59.013 50.000 0.00 0.00 41.38 6.13
661 662 8.669394 TTATAAGCACATACGATAGATTGACG 57.331 34.615 0.00 0.00 41.38 4.35
663 664 9.639601 CCTTTATAAGCACATACGATAGATTGA 57.360 33.333 0.00 0.00 41.38 2.57
664 665 9.424319 ACCTTTATAAGCACATACGATAGATTG 57.576 33.333 0.00 0.00 41.38 2.67
668 669 7.974501 CCCTACCTTTATAAGCACATACGATAG 59.025 40.741 0.00 0.00 46.19 2.08
670 671 6.269307 ACCCTACCTTTATAAGCACATACGAT 59.731 38.462 0.00 0.00 0.00 3.73
672 673 5.850614 ACCCTACCTTTATAAGCACATACG 58.149 41.667 0.00 0.00 0.00 3.06
673 674 6.929606 CAGACCCTACCTTTATAAGCACATAC 59.070 42.308 0.00 0.00 0.00 2.39
674 675 6.463897 GCAGACCCTACCTTTATAAGCACATA 60.464 42.308 0.00 0.00 0.00 2.29
678 679 3.181469 CGCAGACCCTACCTTTATAAGCA 60.181 47.826 0.00 0.00 0.00 3.91
679 680 3.181468 ACGCAGACCCTACCTTTATAAGC 60.181 47.826 0.00 0.00 0.00 3.09
680 681 4.142004 ACACGCAGACCCTACCTTTATAAG 60.142 45.833 0.00 0.00 0.00 1.73
681 682 3.770933 ACACGCAGACCCTACCTTTATAA 59.229 43.478 0.00 0.00 0.00 0.98
682 683 3.131577 CACACGCAGACCCTACCTTTATA 59.868 47.826 0.00 0.00 0.00 0.98
684 685 1.274167 CACACGCAGACCCTACCTTTA 59.726 52.381 0.00 0.00 0.00 1.85
686 687 1.119574 ACACACGCAGACCCTACCTT 61.120 55.000 0.00 0.00 0.00 3.50
688 689 1.374252 CACACACGCAGACCCTACC 60.374 63.158 0.00 0.00 0.00 3.18
689 690 0.249741 AACACACACGCAGACCCTAC 60.250 55.000 0.00 0.00 0.00 3.18
690 691 0.466543 AAACACACACGCAGACCCTA 59.533 50.000 0.00 0.00 0.00 3.53
691 692 0.393808 AAAACACACACGCAGACCCT 60.394 50.000 0.00 0.00 0.00 4.34
693 694 3.619233 ATAAAAACACACACGCAGACC 57.381 42.857 0.00 0.00 0.00 3.85
694 695 5.404366 TCTCTATAAAAACACACACGCAGAC 59.596 40.000 0.00 0.00 0.00 3.51
695 696 5.534407 TCTCTATAAAAACACACACGCAGA 58.466 37.500 0.00 0.00 0.00 4.26
696 697 5.839262 TCTCTATAAAAACACACACGCAG 57.161 39.130 0.00 0.00 0.00 5.18
698 699 6.090898 ACTCATCTCTATAAAAACACACACGC 59.909 38.462 0.00 0.00 0.00 5.34
699 700 7.116376 ACACTCATCTCTATAAAAACACACACG 59.884 37.037 0.00 0.00 0.00 4.49
700 701 8.311650 ACACTCATCTCTATAAAAACACACAC 57.688 34.615 0.00 0.00 0.00 3.82
704 705 8.269424 CGCATACACTCATCTCTATAAAAACAC 58.731 37.037 0.00 0.00 0.00 3.32
706 707 7.042725 TGCGCATACACTCATCTCTATAAAAAC 60.043 37.037 5.66 0.00 0.00 2.43
710 711 5.705609 TGCGCATACACTCATCTCTATAA 57.294 39.130 5.66 0.00 0.00 0.98
711 712 5.904362 ATGCGCATACACTCATCTCTATA 57.096 39.130 24.02 0.00 0.00 1.31
712 713 4.797800 ATGCGCATACACTCATCTCTAT 57.202 40.909 24.02 0.00 0.00 1.98
713 714 5.904362 ATATGCGCATACACTCATCTCTA 57.096 39.130 31.17 7.71 0.00 2.43
715 716 8.078596 TCATATATATGCGCATACACTCATCTC 58.921 37.037 31.17 0.00 33.76 2.75
716 717 7.945134 TCATATATATGCGCATACACTCATCT 58.055 34.615 31.17 15.68 33.76 2.90
717 718 8.483218 GTTCATATATATGCGCATACACTCATC 58.517 37.037 31.17 14.68 33.76 2.92
720 721 6.201044 GGGTTCATATATATGCGCATACACTC 59.799 42.308 31.17 14.94 33.76 3.51
722 723 5.236478 GGGGTTCATATATATGCGCATACAC 59.764 44.000 31.17 19.46 33.76 2.90
723 724 5.130311 AGGGGTTCATATATATGCGCATACA 59.870 40.000 31.17 22.05 33.76 2.29
724 725 5.466728 CAGGGGTTCATATATATGCGCATAC 59.533 44.000 31.17 18.43 33.76 2.39
725 726 5.130311 ACAGGGGTTCATATATATGCGCATA 59.870 40.000 30.72 30.72 33.76 3.14
726 727 4.080356 ACAGGGGTTCATATATATGCGCAT 60.080 41.667 28.23 28.23 33.76 4.73
728 729 3.623060 CACAGGGGTTCATATATATGCGC 59.377 47.826 16.59 0.00 33.76 6.09
729 730 4.832248 ACACAGGGGTTCATATATATGCG 58.168 43.478 16.59 0.00 33.76 4.73
731 732 5.488919 AGGGACACAGGGGTTCATATATATG 59.511 44.000 15.47 15.47 35.04 1.78
733 734 5.101254 AGGGACACAGGGGTTCATATATA 57.899 43.478 0.00 0.00 0.00 0.86
734 735 3.954662 AGGGACACAGGGGTTCATATAT 58.045 45.455 0.00 0.00 0.00 0.86
736 737 2.286935 AGGGACACAGGGGTTCATAT 57.713 50.000 0.00 0.00 0.00 1.78
738 739 1.203440 ACTAGGGACACAGGGGTTCAT 60.203 52.381 0.00 0.00 0.00 2.57
739 740 0.192566 ACTAGGGACACAGGGGTTCA 59.807 55.000 0.00 0.00 0.00 3.18
740 741 0.613777 CACTAGGGACACAGGGGTTC 59.386 60.000 0.00 0.00 0.00 3.62
741 742 0.104620 ACACTAGGGACACAGGGGTT 60.105 55.000 0.00 0.00 0.00 4.11
742 743 0.104620 AACACTAGGGACACAGGGGT 60.105 55.000 0.00 0.00 0.00 4.95
743 744 1.064825 AAACACTAGGGACACAGGGG 58.935 55.000 0.00 0.00 0.00 4.79
744 745 2.372172 AGAAAACACTAGGGACACAGGG 59.628 50.000 0.00 0.00 0.00 4.45
745 746 3.771577 AGAAAACACTAGGGACACAGG 57.228 47.619 0.00 0.00 0.00 4.00
746 747 7.562454 TTTTAAGAAAACACTAGGGACACAG 57.438 36.000 0.00 0.00 0.00 3.66
747 748 7.941431 TTTTTAAGAAAACACTAGGGACACA 57.059 32.000 0.00 0.00 30.07 3.72
772 773 0.182775 AGGGCAACAGAACGGTCTTT 59.817 50.000 0.00 0.00 39.74 2.52
773 774 0.250338 GAGGGCAACAGAACGGTCTT 60.250 55.000 0.00 0.00 39.74 3.01
776 777 2.113243 GAGGAGGGCAACAGAACGGT 62.113 60.000 0.00 0.00 39.74 4.83
777 778 1.376037 GAGGAGGGCAACAGAACGG 60.376 63.158 0.00 0.00 39.74 4.44
778 779 0.951040 GTGAGGAGGGCAACAGAACG 60.951 60.000 0.00 0.00 39.74 3.95
779 780 0.951040 CGTGAGGAGGGCAACAGAAC 60.951 60.000 0.00 0.00 39.74 3.01
780 781 1.371183 CGTGAGGAGGGCAACAGAA 59.629 57.895 0.00 0.00 39.74 3.02
781 782 1.816863 GACGTGAGGAGGGCAACAGA 61.817 60.000 0.00 0.00 39.74 3.41
782 783 1.374758 GACGTGAGGAGGGCAACAG 60.375 63.158 0.00 0.00 39.74 3.16
784 785 1.374758 CAGACGTGAGGAGGGCAAC 60.375 63.158 0.00 0.00 0.00 4.17
785 786 1.837051 ACAGACGTGAGGAGGGCAA 60.837 57.895 0.00 0.00 0.00 4.52
786 787 2.203640 ACAGACGTGAGGAGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
787 788 2.262915 CACAGACGTGAGGAGGGC 59.737 66.667 0.00 0.00 46.80 5.19
795 796 3.610242 GTCTCTTGCTTATCACAGACGTG 59.390 47.826 0.00 0.00 45.08 4.49
796 797 3.367498 GGTCTCTTGCTTATCACAGACGT 60.367 47.826 0.00 0.00 36.43 4.34
797 798 3.182967 GGTCTCTTGCTTATCACAGACG 58.817 50.000 0.00 0.00 36.43 4.18
798 799 3.182967 CGGTCTCTTGCTTATCACAGAC 58.817 50.000 0.00 0.00 35.52 3.51
799 800 2.166459 CCGGTCTCTTGCTTATCACAGA 59.834 50.000 0.00 0.00 0.00 3.41
801 802 1.405526 GCCGGTCTCTTGCTTATCACA 60.406 52.381 1.90 0.00 0.00 3.58
802 803 1.291132 GCCGGTCTCTTGCTTATCAC 58.709 55.000 1.90 0.00 0.00 3.06
803 804 0.179111 CGCCGGTCTCTTGCTTATCA 60.179 55.000 1.90 0.00 0.00 2.15
804 805 1.491505 GCGCCGGTCTCTTGCTTATC 61.492 60.000 1.90 0.00 0.00 1.75
805 806 1.521681 GCGCCGGTCTCTTGCTTAT 60.522 57.895 1.90 0.00 0.00 1.73
806 807 2.125673 GCGCCGGTCTCTTGCTTA 60.126 61.111 1.90 0.00 0.00 3.09
811 812 2.879233 TTTCCTGCGCCGGTCTCTT 61.879 57.895 17.97 0.00 0.00 2.85
812 813 3.311110 TTTCCTGCGCCGGTCTCT 61.311 61.111 17.97 0.00 0.00 3.10
813 814 3.119096 GTTTCCTGCGCCGGTCTC 61.119 66.667 17.97 5.59 0.00 3.36
815 816 3.723348 GTGTTTCCTGCGCCGGTC 61.723 66.667 17.97 10.02 0.00 4.79
817 818 3.039202 GATGTGTTTCCTGCGCCGG 62.039 63.158 12.26 12.26 0.00 6.13
819 820 2.877691 GGATGTGTTTCCTGCGCC 59.122 61.111 4.18 0.00 32.68 6.53
820 821 1.017177 TACGGATGTGTTTCCTGCGC 61.017 55.000 0.00 0.00 33.30 6.09
821 822 0.999406 CTACGGATGTGTTTCCTGCG 59.001 55.000 0.00 0.00 33.30 5.18
823 824 0.999406 CGCTACGGATGTGTTTCCTG 59.001 55.000 0.00 0.00 33.30 3.86
825 826 1.935933 ATCGCTACGGATGTGTTTCC 58.064 50.000 0.00 0.00 0.00 3.13
826 827 4.327898 TGTTAATCGCTACGGATGTGTTTC 59.672 41.667 0.00 0.00 0.00 2.78
828 829 3.852286 TGTTAATCGCTACGGATGTGTT 58.148 40.909 0.00 0.00 0.00 3.32
829 830 3.513680 TGTTAATCGCTACGGATGTGT 57.486 42.857 0.00 0.00 0.00 3.72
830 831 3.863424 ACTTGTTAATCGCTACGGATGTG 59.137 43.478 0.00 0.00 0.00 3.21
834 835 3.443329 TGGTACTTGTTAATCGCTACGGA 59.557 43.478 0.00 0.00 0.00 4.69
836 837 3.242248 GCTGGTACTTGTTAATCGCTACG 59.758 47.826 0.00 0.00 0.00 3.51
837 838 4.178540 TGCTGGTACTTGTTAATCGCTAC 58.821 43.478 0.00 0.00 0.00 3.58
838 839 4.459390 TGCTGGTACTTGTTAATCGCTA 57.541 40.909 0.00 0.00 0.00 4.26
841 842 3.245284 CGGATGCTGGTACTTGTTAATCG 59.755 47.826 0.00 0.00 0.00 3.34
842 843 3.560068 CCGGATGCTGGTACTTGTTAATC 59.440 47.826 0.00 0.00 0.00 1.75
843 844 3.541632 CCGGATGCTGGTACTTGTTAAT 58.458 45.455 0.00 0.00 0.00 1.40
844 845 2.355310 CCCGGATGCTGGTACTTGTTAA 60.355 50.000 0.73 0.00 0.00 2.01
845 846 1.208535 CCCGGATGCTGGTACTTGTTA 59.791 52.381 0.73 0.00 0.00 2.41
846 847 0.035439 CCCGGATGCTGGTACTTGTT 60.035 55.000 0.73 0.00 0.00 2.83
848 849 0.744414 CACCCGGATGCTGGTACTTG 60.744 60.000 0.73 0.00 32.32 3.16
849 850 0.907704 TCACCCGGATGCTGGTACTT 60.908 55.000 0.73 0.00 32.32 2.24
851 852 0.180406 ATTCACCCGGATGCTGGTAC 59.820 55.000 0.73 0.00 32.32 3.34
852 853 0.468226 GATTCACCCGGATGCTGGTA 59.532 55.000 0.73 0.00 32.32 3.25
857 858 1.595382 CGGAGATTCACCCGGATGC 60.595 63.158 0.73 0.00 41.89 3.91
858 859 0.249489 GTCGGAGATTCACCCGGATG 60.249 60.000 0.73 0.00 45.36 3.51
867 3722 3.181543 GCGCGTATATTTGTCGGAGATTC 60.182 47.826 8.43 0.00 40.67 2.52
877 3732 7.725371 CGATGTTTTTAATTGCGCGTATATTTG 59.275 33.333 8.43 0.00 0.00 2.32
884 3739 3.190314 TCGATGTTTTTAATTGCGCGT 57.810 38.095 8.43 0.00 0.00 6.01
885 3740 3.122483 CGATCGATGTTTTTAATTGCGCG 60.122 43.478 10.26 0.00 0.00 6.86
1021 3884 4.922026 GGCGTGAACCACCACCGT 62.922 66.667 0.00 0.00 33.67 4.83
1074 3937 2.289002 GAGCTTAATCTTGCCCGTGATG 59.711 50.000 0.00 0.00 0.00 3.07
1091 3957 1.270358 GGAAAGTGTCGGAAGTGAGCT 60.270 52.381 0.00 0.00 0.00 4.09
1156 4022 1.080974 CGTCGACAACGCTAGGGTT 60.081 57.895 18.71 18.71 45.76 4.11
1167 4033 0.742505 AACTGAACTGGTCGTCGACA 59.257 50.000 25.64 11.66 33.68 4.35
1222 4088 1.761198 GGAATAGTAGGCCGTGACCTT 59.239 52.381 0.00 0.00 41.50 3.50
1291 4157 0.179004 TTCGGGGTGTGCAAACTGAT 60.179 50.000 7.04 0.00 0.00 2.90
1296 4162 0.106918 AGAACTTCGGGGTGTGCAAA 60.107 50.000 0.00 0.00 0.00 3.68
1298 4164 1.070786 GAGAACTTCGGGGTGTGCA 59.929 57.895 0.00 0.00 0.00 4.57
1299 4165 2.027625 CGAGAACTTCGGGGTGTGC 61.028 63.158 0.00 0.00 45.54 4.57
1300 4166 4.261888 CGAGAACTTCGGGGTGTG 57.738 61.111 0.00 0.00 45.54 3.82
1324 4190 2.277591 CGGTACCCCTGACCAACGA 61.278 63.158 6.25 0.00 36.72 3.85
1325 4193 2.263540 CGGTACCCCTGACCAACG 59.736 66.667 6.25 0.00 36.72 4.10
1333 4201 1.969862 CGAACTTGTCGGTACCCCT 59.030 57.895 6.25 0.00 46.45 4.79
1342 4210 2.155155 CGGCTTTACTCACGAACTTGTC 59.845 50.000 0.00 0.00 0.00 3.18
1350 4218 1.068474 CCAAGTCGGCTTTACTCACG 58.932 55.000 0.00 0.00 31.49 4.35
1397 4265 1.737029 CGGTGCACTTGATCACGAGAT 60.737 52.381 17.98 0.00 37.13 2.75
1398 4266 0.388520 CGGTGCACTTGATCACGAGA 60.389 55.000 17.98 0.00 34.20 4.04
1401 4269 1.781555 GACGGTGCACTTGATCACG 59.218 57.895 17.98 12.16 34.20 4.35
1430 4307 1.092348 CAGTCGGTCGTCCATCAGTA 58.908 55.000 0.00 0.00 0.00 2.74
1540 5586 1.407299 CCAGCCGATCTTGATGGTCAA 60.407 52.381 7.92 0.00 34.79 3.18
1633 5679 1.129917 CCTCTGCTCTCCATCATGGT 58.870 55.000 2.79 0.00 39.03 3.55
1664 5710 5.716228 ACCTTTGCATTTATGTCCTTGATGA 59.284 36.000 0.00 0.00 0.00 2.92
1669 5715 5.925969 CGAAAACCTTTGCATTTATGTCCTT 59.074 36.000 0.00 0.00 0.00 3.36
1677 5723 5.463061 CACAATCTCGAAAACCTTTGCATTT 59.537 36.000 0.00 0.00 0.00 2.32
1678 5724 4.984161 CACAATCTCGAAAACCTTTGCATT 59.016 37.500 0.00 0.00 0.00 3.56
1683 5729 3.550842 GCAGCACAATCTCGAAAACCTTT 60.551 43.478 0.00 0.00 0.00 3.11
1743 5789 2.341101 GGTCTCTTCCGTCGCCTCA 61.341 63.158 0.00 0.00 0.00 3.86
1747 5793 0.599204 TTTGTGGTCTCTTCCGTCGC 60.599 55.000 0.00 0.00 0.00 5.19
1749 5795 2.234300 TGTTTGTGGTCTCTTCCGTC 57.766 50.000 0.00 0.00 0.00 4.79
1815 5861 5.459536 TCATCTCGCATATCAGCTTTAGT 57.540 39.130 0.00 0.00 0.00 2.24
1835 5881 2.669569 GCGCCTTGCTCAACCTCA 60.670 61.111 0.00 0.00 41.73 3.86
1919 5965 5.011090 TGTCATATACCTGAGACAGCAAC 57.989 43.478 0.00 0.00 36.20 4.17
1990 6036 3.065648 TGTGGTTGGTTTCGCTTTAGTTC 59.934 43.478 0.00 0.00 0.00 3.01
2048 6094 7.390823 TGACATGACTAAGTTGCCAGTAATTA 58.609 34.615 0.00 0.00 0.00 1.40
2049 6095 6.237901 TGACATGACTAAGTTGCCAGTAATT 58.762 36.000 0.00 0.00 0.00 1.40
2050 6096 5.804639 TGACATGACTAAGTTGCCAGTAAT 58.195 37.500 0.00 0.00 0.00 1.89
2051 6097 5.222079 TGACATGACTAAGTTGCCAGTAA 57.778 39.130 0.00 0.00 0.00 2.24
2506 7121 1.602377 GCACGGTTGACTGCTTTAGTT 59.398 47.619 0.00 0.00 40.53 2.24
2781 7405 1.346068 GTATGAGGGTCAGGGCATCTC 59.654 57.143 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.