Multiple sequence alignment - TraesCS6A01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G104700 chr6A 100.000 2774 0 0 1 2774 73558755 73561528 0.000000e+00 5123.0
1 TraesCS6A01G104700 chr6A 77.587 1691 270 69 709 2338 73510520 73512162 0.000000e+00 922.0
2 TraesCS6A01G104700 chr6A 83.333 354 43 8 363 709 73500386 73500730 2.070000e-81 313.0
3 TraesCS6A01G104700 chr6A 75.714 630 108 31 598 1193 73379374 73379992 9.790000e-70 274.0
4 TraesCS6A01G104700 chr6A 85.484 186 20 6 531 714 72488764 72488944 1.310000e-43 187.0
5 TraesCS6A01G104700 chr6A 89.908 109 10 1 2458 2565 14212785 14212893 3.730000e-29 139.0
6 TraesCS6A01G104700 chr6A 91.346 104 6 2 2464 2565 66381211 66381313 3.730000e-29 139.0
7 TraesCS6A01G104700 chr6A 87.179 117 11 3 597 711 73063643 73063757 2.240000e-26 130.0
8 TraesCS6A01G104700 chr6D 92.000 1425 73 3 468 1851 58242412 58243836 0.000000e+00 1962.0
9 TraesCS6A01G104700 chr6D 92.432 740 40 6 1836 2567 58243917 58244648 0.000000e+00 1042.0
10 TraesCS6A01G104700 chr6D 80.584 1370 206 29 514 1831 58095154 58096515 0.000000e+00 1002.0
11 TraesCS6A01G104700 chr6D 79.891 1288 183 47 939 2184 58230761 58232014 0.000000e+00 874.0
12 TraesCS6A01G104700 chr6D 80.155 388 59 7 2040 2421 58096653 58097028 9.790000e-70 274.0
13 TraesCS6A01G104700 chr6D 95.349 172 7 1 2559 2730 58244709 58244879 3.520000e-69 272.0
14 TraesCS6A01G104700 chr6D 89.950 199 16 4 519 717 57158792 57158986 1.280000e-63 254.0
15 TraesCS6A01G104700 chr6D 81.121 339 40 14 520 838 57514148 57514482 1.650000e-62 250.0
16 TraesCS6A01G104700 chr6D 90.850 153 13 1 565 717 57171269 57171420 1.300000e-48 204.0
17 TraesCS6A01G104700 chr6D 80.800 125 24 0 708 832 57894243 57894367 6.320000e-17 99.0
18 TraesCS6A01G104700 chr6D 92.063 63 5 0 1147 1209 58247913 58247975 3.810000e-14 89.8
19 TraesCS6A01G104700 chr6B 80.190 1474 195 39 505 1916 77746773 77748211 0.000000e+00 1014.0
20 TraesCS6A01G104700 chr6B 79.956 1357 204 31 514 1820 130324339 130325677 0.000000e+00 937.0
21 TraesCS6A01G104700 chr6B 75.330 908 139 52 1316 2176 130506743 130507612 9.450000e-95 357.0
22 TraesCS6A01G104700 chr6B 75.358 698 127 27 520 1191 129446981 129447659 7.510000e-76 294.0
23 TraesCS6A01G104700 chr6B 90.850 153 13 1 565 717 128016534 128016685 1.300000e-48 204.0
24 TraesCS6A01G104700 chr6B 85.841 113 12 3 597 707 129850444 129850554 1.750000e-22 117.0
25 TraesCS6A01G104700 chr6B 100.000 32 0 0 2307 2338 130565824 130565855 2.980000e-05 60.2
26 TraesCS6A01G104700 chrUn 95.556 90 4 0 2476 2565 419376015 419376104 8.010000e-31 145.0
27 TraesCS6A01G104700 chr7A 92.308 104 5 2 2464 2565 712446469 712446367 8.010000e-31 145.0
28 TraesCS6A01G104700 chr7A 90.090 111 4 4 2462 2565 700712859 700712969 1.340000e-28 137.0
29 TraesCS6A01G104700 chr4A 92.233 103 5 3 2465 2565 733216681 733216580 2.880000e-30 143.0
30 TraesCS6A01G104700 chr5B 88.983 118 7 5 2462 2576 656466859 656466745 1.040000e-29 141.0
31 TraesCS6A01G104700 chr5D 91.346 104 6 2 2464 2565 520803065 520802963 3.730000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G104700 chr6A 73558755 73561528 2773 False 5123.00 5123 100.0000 1 2774 1 chr6A.!!$F8 2773
1 TraesCS6A01G104700 chr6A 73510520 73512162 1642 False 922.00 922 77.5870 709 2338 1 chr6A.!!$F7 1629
2 TraesCS6A01G104700 chr6A 73379374 73379992 618 False 274.00 274 75.7140 598 1193 1 chr6A.!!$F5 595
3 TraesCS6A01G104700 chr6D 58230761 58232014 1253 False 874.00 874 79.8910 939 2184 1 chr6D.!!$F5 1245
4 TraesCS6A01G104700 chr6D 58242412 58247975 5563 False 841.45 1962 92.9610 468 2730 4 chr6D.!!$F7 2262
5 TraesCS6A01G104700 chr6D 58095154 58097028 1874 False 638.00 1002 80.3695 514 2421 2 chr6D.!!$F6 1907
6 TraesCS6A01G104700 chr6B 77746773 77748211 1438 False 1014.00 1014 80.1900 505 1916 1 chr6B.!!$F1 1411
7 TraesCS6A01G104700 chr6B 130324339 130325677 1338 False 937.00 937 79.9560 514 1820 1 chr6B.!!$F5 1306
8 TraesCS6A01G104700 chr6B 130506743 130507612 869 False 357.00 357 75.3300 1316 2176 1 chr6B.!!$F6 860
9 TraesCS6A01G104700 chr6B 129446981 129447659 678 False 294.00 294 75.3580 520 1191 1 chr6B.!!$F3 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.035056 ATTGAGAAAGCCACCGGGAG 60.035 55.0 6.32 0.0 35.59 4.3 F
292 293 0.036294 GGAAGTTTGACCGGGGAGAG 60.036 60.0 6.32 0.0 0.00 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1443 0.109342 ACTCTGTCCAGGCTGGTTTG 59.891 55.000 31.6 21.22 39.03 2.93 R
1779 1895 1.276421 TGACAGCAGGCTTACCTCTTC 59.724 52.381 0.0 0.00 46.34 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.680237 CAAGCCTCACGACGCCCA 62.680 66.667 0.00 0.00 0.00 5.36
18 19 4.681978 AAGCCTCACGACGCCCAC 62.682 66.667 0.00 0.00 0.00 4.61
21 22 4.742201 CCTCACGACGCCCACTGG 62.742 72.222 0.00 0.00 0.00 4.00
22 23 3.680786 CTCACGACGCCCACTGGA 61.681 66.667 0.00 0.00 0.00 3.86
23 24 3.633094 CTCACGACGCCCACTGGAG 62.633 68.421 0.00 0.00 37.48 3.86
27 28 4.314440 GACGCCCACTGGAGCACA 62.314 66.667 0.00 0.00 34.24 4.57
35 36 2.268280 CTGGAGCACAGCAGGAGG 59.732 66.667 0.00 0.00 40.97 4.30
36 37 2.203832 TGGAGCACAGCAGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
37 38 2.267324 GGAGCACAGCAGGAGGAC 59.733 66.667 0.00 0.00 0.00 3.85
38 39 2.125753 GAGCACAGCAGGAGGACG 60.126 66.667 0.00 0.00 0.00 4.79
39 40 4.385405 AGCACAGCAGGAGGACGC 62.385 66.667 0.00 0.00 0.00 5.19
48 49 4.832608 GGAGGACGCGGCCGAATT 62.833 66.667 33.48 8.12 38.29 2.17
49 50 3.564027 GAGGACGCGGCCGAATTG 61.564 66.667 33.48 17.48 38.29 2.32
50 51 4.077184 AGGACGCGGCCGAATTGA 62.077 61.111 33.48 0.00 38.29 2.57
51 52 3.564027 GGACGCGGCCGAATTGAG 61.564 66.667 33.48 14.17 38.29 3.02
52 53 2.508439 GACGCGGCCGAATTGAGA 60.508 61.111 33.48 0.00 38.29 3.27
53 54 2.047655 ACGCGGCCGAATTGAGAA 60.048 55.556 33.48 0.00 38.29 2.87
54 55 1.632046 GACGCGGCCGAATTGAGAAA 61.632 55.000 33.48 0.00 38.29 2.52
55 56 1.060937 CGCGGCCGAATTGAGAAAG 59.939 57.895 33.48 1.73 36.29 2.62
56 57 1.226407 GCGGCCGAATTGAGAAAGC 60.226 57.895 33.48 1.25 0.00 3.51
57 58 1.429423 CGGCCGAATTGAGAAAGCC 59.571 57.895 24.07 0.00 37.03 4.35
58 59 1.305219 CGGCCGAATTGAGAAAGCCA 61.305 55.000 24.07 0.00 40.49 4.75
59 60 0.171231 GGCCGAATTGAGAAAGCCAC 59.829 55.000 0.00 0.00 40.20 5.01
60 61 0.171231 GCCGAATTGAGAAAGCCACC 59.829 55.000 0.00 0.00 0.00 4.61
61 62 0.447801 CCGAATTGAGAAAGCCACCG 59.552 55.000 0.00 0.00 0.00 4.94
62 63 0.447801 CGAATTGAGAAAGCCACCGG 59.552 55.000 0.00 0.00 0.00 5.28
63 64 0.811281 GAATTGAGAAAGCCACCGGG 59.189 55.000 6.32 0.00 37.18 5.73
64 65 0.404040 AATTGAGAAAGCCACCGGGA 59.596 50.000 6.32 0.00 35.59 5.14
65 66 0.035056 ATTGAGAAAGCCACCGGGAG 60.035 55.000 6.32 0.00 35.59 4.30
89 90 4.443266 GCGAGCGCCTCTCAACCT 62.443 66.667 2.29 0.00 41.98 3.50
90 91 2.202676 CGAGCGCCTCTCAACCTC 60.203 66.667 2.29 0.00 41.98 3.85
91 92 2.185608 GAGCGCCTCTCAACCTCC 59.814 66.667 2.29 0.00 41.51 4.30
92 93 3.708220 GAGCGCCTCTCAACCTCCG 62.708 68.421 2.29 0.00 41.51 4.63
93 94 4.070552 GCGCCTCTCAACCTCCGT 62.071 66.667 0.00 0.00 0.00 4.69
94 95 2.182030 CGCCTCTCAACCTCCGTC 59.818 66.667 0.00 0.00 0.00 4.79
95 96 2.579738 GCCTCTCAACCTCCGTCC 59.420 66.667 0.00 0.00 0.00 4.79
96 97 3.020237 GCCTCTCAACCTCCGTCCC 62.020 68.421 0.00 0.00 0.00 4.46
97 98 2.359967 CCTCTCAACCTCCGTCCCC 61.360 68.421 0.00 0.00 0.00 4.81
98 99 2.678934 TCTCAACCTCCGTCCCCG 60.679 66.667 0.00 0.00 0.00 5.73
99 100 2.678934 CTCAACCTCCGTCCCCGA 60.679 66.667 0.00 0.00 35.63 5.14
100 101 2.993264 TCAACCTCCGTCCCCGAC 60.993 66.667 0.00 0.00 35.63 4.79
101 102 4.078516 CAACCTCCGTCCCCGACC 62.079 72.222 0.00 0.00 35.63 4.79
102 103 4.626402 AACCTCCGTCCCCGACCA 62.626 66.667 0.00 0.00 35.63 4.02
108 109 4.373116 CGTCCCCGACCACCACTG 62.373 72.222 0.00 0.00 35.63 3.66
109 110 2.920912 GTCCCCGACCACCACTGA 60.921 66.667 0.00 0.00 0.00 3.41
110 111 2.920912 TCCCCGACCACCACTGAC 60.921 66.667 0.00 0.00 0.00 3.51
111 112 3.238497 CCCCGACCACCACTGACA 61.238 66.667 0.00 0.00 0.00 3.58
112 113 2.813726 CCCCGACCACCACTGACAA 61.814 63.158 0.00 0.00 0.00 3.18
113 114 1.147376 CCCGACCACCACTGACAAA 59.853 57.895 0.00 0.00 0.00 2.83
114 115 0.884704 CCCGACCACCACTGACAAAG 60.885 60.000 0.00 0.00 0.00 2.77
115 116 0.105964 CCGACCACCACTGACAAAGA 59.894 55.000 0.00 0.00 0.00 2.52
116 117 1.474320 CCGACCACCACTGACAAAGAA 60.474 52.381 0.00 0.00 0.00 2.52
117 118 1.867233 CGACCACCACTGACAAAGAAG 59.133 52.381 0.00 0.00 0.00 2.85
118 119 2.483013 CGACCACCACTGACAAAGAAGA 60.483 50.000 0.00 0.00 0.00 2.87
119 120 2.872858 GACCACCACTGACAAAGAAGAC 59.127 50.000 0.00 0.00 0.00 3.01
120 121 2.238646 ACCACCACTGACAAAGAAGACA 59.761 45.455 0.00 0.00 0.00 3.41
121 122 3.117888 ACCACCACTGACAAAGAAGACAT 60.118 43.478 0.00 0.00 0.00 3.06
122 123 3.251729 CCACCACTGACAAAGAAGACATG 59.748 47.826 0.00 0.00 0.00 3.21
123 124 2.880890 ACCACTGACAAAGAAGACATGC 59.119 45.455 0.00 0.00 0.00 4.06
124 125 2.227388 CCACTGACAAAGAAGACATGCC 59.773 50.000 0.00 0.00 0.00 4.40
125 126 2.096069 CACTGACAAAGAAGACATGCCG 60.096 50.000 0.00 0.00 0.00 5.69
126 127 2.224281 ACTGACAAAGAAGACATGCCGA 60.224 45.455 0.00 0.00 0.00 5.54
127 128 2.807967 CTGACAAAGAAGACATGCCGAA 59.192 45.455 0.00 0.00 0.00 4.30
128 129 2.807967 TGACAAAGAAGACATGCCGAAG 59.192 45.455 0.00 0.00 0.00 3.79
129 130 2.808543 GACAAAGAAGACATGCCGAAGT 59.191 45.455 0.00 0.00 0.00 3.01
130 131 2.808543 ACAAAGAAGACATGCCGAAGTC 59.191 45.455 0.00 0.00 35.02 3.01
131 132 2.807967 CAAAGAAGACATGCCGAAGTCA 59.192 45.455 0.00 0.00 37.23 3.41
132 133 2.086054 AGAAGACATGCCGAAGTCAC 57.914 50.000 0.00 0.00 37.23 3.67
133 134 1.344438 AGAAGACATGCCGAAGTCACA 59.656 47.619 0.00 0.00 37.23 3.58
134 135 1.461127 GAAGACATGCCGAAGTCACAC 59.539 52.381 0.00 0.00 37.23 3.82
135 136 0.320771 AGACATGCCGAAGTCACACC 60.321 55.000 0.00 0.00 37.23 4.16
136 137 1.626654 GACATGCCGAAGTCACACCG 61.627 60.000 0.00 0.00 34.93 4.94
137 138 2.742372 ATGCCGAAGTCACACCGC 60.742 61.111 0.00 0.00 0.00 5.68
138 139 3.529341 ATGCCGAAGTCACACCGCA 62.529 57.895 0.00 0.00 0.00 5.69
139 140 3.712881 GCCGAAGTCACACCGCAC 61.713 66.667 0.00 0.00 0.00 5.34
140 141 3.041940 CCGAAGTCACACCGCACC 61.042 66.667 0.00 0.00 0.00 5.01
141 142 3.403057 CGAAGTCACACCGCACCG 61.403 66.667 0.00 0.00 0.00 4.94
142 143 3.712881 GAAGTCACACCGCACCGC 61.713 66.667 0.00 0.00 0.00 5.68
168 169 2.122989 ACACGTGTGTCCCTCCCT 60.123 61.111 22.71 0.00 40.24 4.20
169 170 2.207924 ACACGTGTGTCCCTCCCTC 61.208 63.158 22.71 0.00 40.24 4.30
170 171 2.603776 ACGTGTGTCCCTCCCTCC 60.604 66.667 0.00 0.00 0.00 4.30
171 172 3.391382 CGTGTGTCCCTCCCTCCC 61.391 72.222 0.00 0.00 0.00 4.30
172 173 3.009714 GTGTGTCCCTCCCTCCCC 61.010 72.222 0.00 0.00 0.00 4.81
173 174 4.348495 TGTGTCCCTCCCTCCCCC 62.348 72.222 0.00 0.00 0.00 5.40
174 175 4.348495 GTGTCCCTCCCTCCCCCA 62.348 72.222 0.00 0.00 0.00 4.96
175 176 4.348495 TGTCCCTCCCTCCCCCAC 62.348 72.222 0.00 0.00 0.00 4.61
176 177 4.348495 GTCCCTCCCTCCCCCACA 62.348 72.222 0.00 0.00 0.00 4.17
177 178 4.348495 TCCCTCCCTCCCCCACAC 62.348 72.222 0.00 0.00 0.00 3.82
178 179 4.675303 CCCTCCCTCCCCCACACA 62.675 72.222 0.00 0.00 0.00 3.72
179 180 3.330720 CCTCCCTCCCCCACACAC 61.331 72.222 0.00 0.00 0.00 3.82
180 181 2.529136 CTCCCTCCCCCACACACA 60.529 66.667 0.00 0.00 0.00 3.72
181 182 2.039298 TCCCTCCCCCACACACAA 60.039 61.111 0.00 0.00 0.00 3.33
182 183 1.698116 TCCCTCCCCCACACACAAA 60.698 57.895 0.00 0.00 0.00 2.83
183 184 1.071314 TCCCTCCCCCACACACAAAT 61.071 55.000 0.00 0.00 0.00 2.32
184 185 0.899717 CCCTCCCCCACACACAAATG 60.900 60.000 0.00 0.00 0.00 2.32
185 186 0.899717 CCTCCCCCACACACAAATGG 60.900 60.000 0.00 0.00 35.59 3.16
186 187 0.112218 CTCCCCCACACACAAATGGA 59.888 55.000 0.00 0.00 38.34 3.41
187 188 0.558220 TCCCCCACACACAAATGGAA 59.442 50.000 0.00 0.00 38.34 3.53
188 189 1.062886 TCCCCCACACACAAATGGAAA 60.063 47.619 0.00 0.00 38.34 3.13
189 190 1.344114 CCCCCACACACAAATGGAAAG 59.656 52.381 0.00 0.00 38.34 2.62
190 191 2.315176 CCCCACACACAAATGGAAAGA 58.685 47.619 0.00 0.00 38.34 2.52
191 192 2.035832 CCCCACACACAAATGGAAAGAC 59.964 50.000 0.00 0.00 38.34 3.01
192 193 2.287547 CCCACACACAAATGGAAAGACG 60.288 50.000 0.00 0.00 38.34 4.18
193 194 2.384382 CACACACAAATGGAAAGACGC 58.616 47.619 0.00 0.00 0.00 5.19
194 195 1.336755 ACACACAAATGGAAAGACGCC 59.663 47.619 0.00 0.00 0.00 5.68
195 196 0.958822 ACACAAATGGAAAGACGCCC 59.041 50.000 0.00 0.00 0.00 6.13
196 197 0.243636 CACAAATGGAAAGACGCCCC 59.756 55.000 0.00 0.00 0.00 5.80
197 198 1.241315 ACAAATGGAAAGACGCCCCG 61.241 55.000 0.00 0.00 0.00 5.73
198 199 2.340328 AAATGGAAAGACGCCCCGC 61.340 57.895 0.00 0.00 0.00 6.13
199 200 4.796495 ATGGAAAGACGCCCCGCC 62.796 66.667 0.00 0.00 0.00 6.13
202 203 3.733960 GAAAGACGCCCCGCCAAC 61.734 66.667 0.00 0.00 0.00 3.77
214 215 3.499737 GCCAACGCCAGATCCGTG 61.500 66.667 0.00 0.00 39.13 4.94
215 216 3.499737 CCAACGCCAGATCCGTGC 61.500 66.667 0.00 0.00 39.13 5.34
221 222 4.473520 CCAGATCCGTGCGGGCTT 62.474 66.667 10.94 0.00 34.94 4.35
222 223 2.892425 CAGATCCGTGCGGGCTTC 60.892 66.667 10.94 6.01 34.94 3.86
223 224 4.514577 AGATCCGTGCGGGCTTCG 62.515 66.667 10.94 0.00 42.76 3.79
242 243 2.108362 CCGGCGGGGTCTATTGAC 59.892 66.667 20.56 0.00 42.22 3.18
243 244 2.279252 CGGCGGGGTCTATTGACG 60.279 66.667 0.00 0.00 43.79 4.35
244 245 2.108362 GGCGGGGTCTATTGACGG 59.892 66.667 1.15 0.00 43.79 4.79
245 246 2.588034 GCGGGGTCTATTGACGGC 60.588 66.667 1.15 1.74 43.79 5.68
246 247 2.279252 CGGGGTCTATTGACGGCG 60.279 66.667 4.80 4.80 43.79 6.46
247 248 2.108362 GGGGTCTATTGACGGCGG 59.892 66.667 13.24 0.00 43.79 6.13
248 249 2.728435 GGGGTCTATTGACGGCGGT 61.728 63.158 13.24 0.00 43.79 5.68
249 250 1.394266 GGGGTCTATTGACGGCGGTA 61.394 60.000 13.24 0.00 43.79 4.02
250 251 0.677842 GGGTCTATTGACGGCGGTAT 59.322 55.000 13.24 3.76 43.79 2.73
251 252 1.604693 GGGTCTATTGACGGCGGTATG 60.605 57.143 13.24 0.00 43.79 2.39
252 253 1.338973 GGTCTATTGACGGCGGTATGA 59.661 52.381 13.24 0.00 43.79 2.15
253 254 2.223876 GGTCTATTGACGGCGGTATGAA 60.224 50.000 13.24 0.00 43.79 2.57
254 255 3.050619 GTCTATTGACGGCGGTATGAAG 58.949 50.000 13.24 1.24 33.15 3.02
255 256 2.035449 TCTATTGACGGCGGTATGAAGG 59.965 50.000 13.24 0.00 0.00 3.46
256 257 0.828022 ATTGACGGCGGTATGAAGGA 59.172 50.000 13.24 0.00 0.00 3.36
257 258 0.174845 TTGACGGCGGTATGAAGGAG 59.825 55.000 13.24 0.00 0.00 3.69
258 259 1.067582 GACGGCGGTATGAAGGAGG 59.932 63.158 13.24 0.00 0.00 4.30
259 260 2.365095 GACGGCGGTATGAAGGAGGG 62.365 65.000 13.24 0.00 0.00 4.30
260 261 2.829592 GGCGGTATGAAGGAGGGG 59.170 66.667 0.00 0.00 0.00 4.79
261 262 2.111251 GCGGTATGAAGGAGGGGC 59.889 66.667 0.00 0.00 0.00 5.80
262 263 2.742116 GCGGTATGAAGGAGGGGCA 61.742 63.158 0.00 0.00 0.00 5.36
263 264 1.447643 CGGTATGAAGGAGGGGCAG 59.552 63.158 0.00 0.00 0.00 4.85
264 265 1.048724 CGGTATGAAGGAGGGGCAGA 61.049 60.000 0.00 0.00 0.00 4.26
265 266 0.761802 GGTATGAAGGAGGGGCAGAG 59.238 60.000 0.00 0.00 0.00 3.35
266 267 0.107643 GTATGAAGGAGGGGCAGAGC 59.892 60.000 0.00 0.00 0.00 4.09
267 268 1.402896 TATGAAGGAGGGGCAGAGCG 61.403 60.000 0.00 0.00 0.00 5.03
268 269 4.168291 GAAGGAGGGGCAGAGCGG 62.168 72.222 0.00 0.00 0.00 5.52
277 278 4.168291 GCAGAGCGGGAGGGGAAG 62.168 72.222 0.00 0.00 0.00 3.46
278 279 2.685380 CAGAGCGGGAGGGGAAGT 60.685 66.667 0.00 0.00 0.00 3.01
279 280 2.122954 AGAGCGGGAGGGGAAGTT 59.877 61.111 0.00 0.00 0.00 2.66
280 281 1.539124 AGAGCGGGAGGGGAAGTTT 60.539 57.895 0.00 0.00 0.00 2.66
281 282 1.377333 GAGCGGGAGGGGAAGTTTG 60.377 63.158 0.00 0.00 0.00 2.93
282 283 1.838073 GAGCGGGAGGGGAAGTTTGA 61.838 60.000 0.00 0.00 0.00 2.69
283 284 1.674651 GCGGGAGGGGAAGTTTGAC 60.675 63.158 0.00 0.00 0.00 3.18
284 285 1.002502 CGGGAGGGGAAGTTTGACC 60.003 63.158 0.00 0.00 0.00 4.02
285 286 1.002502 GGGAGGGGAAGTTTGACCG 60.003 63.158 0.00 0.00 0.00 4.79
286 287 1.002502 GGAGGGGAAGTTTGACCGG 60.003 63.158 0.00 0.00 0.00 5.28
287 288 1.002502 GAGGGGAAGTTTGACCGGG 60.003 63.158 6.32 0.00 0.00 5.73
288 289 2.035155 GGGGAAGTTTGACCGGGG 59.965 66.667 6.32 0.00 0.00 5.73
289 290 2.531601 GGGGAAGTTTGACCGGGGA 61.532 63.158 6.32 0.00 0.00 4.81
290 291 1.002502 GGGAAGTTTGACCGGGGAG 60.003 63.158 6.32 0.00 0.00 4.30
291 292 1.486145 GGGAAGTTTGACCGGGGAGA 61.486 60.000 6.32 0.00 0.00 3.71
292 293 0.036294 GGAAGTTTGACCGGGGAGAG 60.036 60.000 6.32 0.00 0.00 3.20
293 294 0.036294 GAAGTTTGACCGGGGAGAGG 60.036 60.000 6.32 0.00 0.00 3.69
294 295 2.046217 GTTTGACCGGGGAGAGGC 60.046 66.667 6.32 0.00 0.00 4.70
295 296 2.203938 TTTGACCGGGGAGAGGCT 60.204 61.111 6.32 0.00 0.00 4.58
296 297 1.846124 TTTGACCGGGGAGAGGCTT 60.846 57.895 6.32 0.00 0.00 4.35
297 298 0.545787 TTTGACCGGGGAGAGGCTTA 60.546 55.000 6.32 0.00 0.00 3.09
298 299 0.976073 TTGACCGGGGAGAGGCTTAG 60.976 60.000 6.32 0.00 0.00 2.18
299 300 1.381463 GACCGGGGAGAGGCTTAGT 60.381 63.158 6.32 0.00 0.00 2.24
300 301 0.106318 GACCGGGGAGAGGCTTAGTA 60.106 60.000 6.32 0.00 0.00 1.82
301 302 0.561680 ACCGGGGAGAGGCTTAGTAT 59.438 55.000 6.32 0.00 0.00 2.12
302 303 1.062352 ACCGGGGAGAGGCTTAGTATT 60.062 52.381 6.32 0.00 0.00 1.89
303 304 1.619332 CCGGGGAGAGGCTTAGTATTC 59.381 57.143 0.00 0.00 0.00 1.75
304 305 2.599677 CGGGGAGAGGCTTAGTATTCT 58.400 52.381 0.00 0.00 0.00 2.40
305 306 2.559231 CGGGGAGAGGCTTAGTATTCTC 59.441 54.545 0.00 0.00 36.26 2.87
306 307 3.577919 GGGGAGAGGCTTAGTATTCTCA 58.422 50.000 10.24 0.00 38.21 3.27
307 308 4.164204 GGGGAGAGGCTTAGTATTCTCAT 58.836 47.826 10.24 0.00 38.21 2.90
308 309 4.595350 GGGGAGAGGCTTAGTATTCTCATT 59.405 45.833 10.24 0.00 38.21 2.57
309 310 5.512232 GGGGAGAGGCTTAGTATTCTCATTG 60.512 48.000 10.24 0.00 38.21 2.82
310 311 5.305644 GGGAGAGGCTTAGTATTCTCATTGA 59.694 44.000 10.24 0.00 38.21 2.57
311 312 6.220201 GGAGAGGCTTAGTATTCTCATTGAC 58.780 44.000 10.24 0.00 38.21 3.18
312 313 6.183360 GGAGAGGCTTAGTATTCTCATTGACA 60.183 42.308 10.24 0.00 38.21 3.58
313 314 7.372260 AGAGGCTTAGTATTCTCATTGACAT 57.628 36.000 0.00 0.00 0.00 3.06
314 315 7.800092 AGAGGCTTAGTATTCTCATTGACATT 58.200 34.615 0.00 0.00 0.00 2.71
315 316 8.928448 AGAGGCTTAGTATTCTCATTGACATTA 58.072 33.333 0.00 0.00 0.00 1.90
316 317 9.717942 GAGGCTTAGTATTCTCATTGACATTAT 57.282 33.333 0.00 0.00 0.00 1.28
373 374 3.220507 TCTGCAAGATTTCCGCAAATG 57.779 42.857 0.00 0.00 38.67 2.32
374 375 2.094597 TCTGCAAGATTTCCGCAAATGG 60.095 45.455 0.00 0.00 38.67 3.16
375 376 1.617850 TGCAAGATTTCCGCAAATGGT 59.382 42.857 0.00 0.00 31.94 3.55
376 377 1.994779 GCAAGATTTCCGCAAATGGTG 59.005 47.619 0.00 0.00 31.94 4.17
377 378 2.610232 GCAAGATTTCCGCAAATGGTGT 60.610 45.455 0.00 0.00 31.94 4.16
378 379 3.652274 CAAGATTTCCGCAAATGGTGTT 58.348 40.909 0.00 0.00 31.94 3.32
379 380 4.057432 CAAGATTTCCGCAAATGGTGTTT 58.943 39.130 0.00 0.00 31.94 2.83
380 381 4.335400 AGATTTCCGCAAATGGTGTTTT 57.665 36.364 0.00 0.00 31.94 2.43
381 382 4.306600 AGATTTCCGCAAATGGTGTTTTC 58.693 39.130 0.00 0.00 31.94 2.29
382 383 3.810310 TTTCCGCAAATGGTGTTTTCT 57.190 38.095 0.00 0.00 0.00 2.52
383 384 3.810310 TTCCGCAAATGGTGTTTTCTT 57.190 38.095 0.00 0.00 0.00 2.52
384 385 3.810310 TCCGCAAATGGTGTTTTCTTT 57.190 38.095 0.00 0.00 0.00 2.52
385 386 3.712187 TCCGCAAATGGTGTTTTCTTTC 58.288 40.909 0.00 0.00 0.00 2.62
386 387 2.799978 CCGCAAATGGTGTTTTCTTTCC 59.200 45.455 0.00 0.00 0.00 3.13
387 388 3.452474 CGCAAATGGTGTTTTCTTTCCA 58.548 40.909 0.00 0.00 0.00 3.53
388 389 3.245048 CGCAAATGGTGTTTTCTTTCCAC 59.755 43.478 0.00 0.00 32.60 4.02
389 390 4.187694 GCAAATGGTGTTTTCTTTCCACA 58.812 39.130 0.00 0.00 32.60 4.17
390 391 4.633565 GCAAATGGTGTTTTCTTTCCACAA 59.366 37.500 0.00 0.00 32.60 3.33
391 392 5.123027 GCAAATGGTGTTTTCTTTCCACAAA 59.877 36.000 0.00 0.00 32.60 2.83
392 393 6.183360 GCAAATGGTGTTTTCTTTCCACAAAT 60.183 34.615 0.00 0.00 32.60 2.32
393 394 7.628153 GCAAATGGTGTTTTCTTTCCACAAATT 60.628 33.333 0.00 0.00 32.60 1.82
394 395 6.923928 ATGGTGTTTTCTTTCCACAAATTG 57.076 33.333 0.00 0.00 32.60 2.32
395 396 5.799213 TGGTGTTTTCTTTCCACAAATTGT 58.201 33.333 0.00 0.00 0.00 2.71
396 397 6.234177 TGGTGTTTTCTTTCCACAAATTGTT 58.766 32.000 0.00 0.00 0.00 2.83
397 398 6.712547 TGGTGTTTTCTTTCCACAAATTGTTT 59.287 30.769 0.00 0.00 0.00 2.83
398 399 7.229506 TGGTGTTTTCTTTCCACAAATTGTTTT 59.770 29.630 0.00 0.00 0.00 2.43
399 400 8.722394 GGTGTTTTCTTTCCACAAATTGTTTTA 58.278 29.630 0.00 0.00 0.00 1.52
400 401 9.753669 GTGTTTTCTTTCCACAAATTGTTTTAG 57.246 29.630 0.00 0.00 0.00 1.85
401 402 8.447053 TGTTTTCTTTCCACAAATTGTTTTAGC 58.553 29.630 0.00 0.00 0.00 3.09
402 403 8.664798 GTTTTCTTTCCACAAATTGTTTTAGCT 58.335 29.630 0.00 0.00 0.00 3.32
403 404 8.785329 TTTCTTTCCACAAATTGTTTTAGCTT 57.215 26.923 0.00 0.00 0.00 3.74
404 405 9.877178 TTTCTTTCCACAAATTGTTTTAGCTTA 57.123 25.926 0.00 0.00 0.00 3.09
405 406 8.865590 TCTTTCCACAAATTGTTTTAGCTTAC 57.134 30.769 0.00 0.00 0.00 2.34
406 407 8.470805 TCTTTCCACAAATTGTTTTAGCTTACA 58.529 29.630 0.00 0.00 0.00 2.41
407 408 9.260002 CTTTCCACAAATTGTTTTAGCTTACAT 57.740 29.630 0.00 0.00 0.00 2.29
408 409 9.606631 TTTCCACAAATTGTTTTAGCTTACATT 57.393 25.926 0.00 0.00 0.00 2.71
409 410 8.810652 TCCACAAATTGTTTTAGCTTACATTC 57.189 30.769 0.00 0.00 0.00 2.67
410 411 8.637986 TCCACAAATTGTTTTAGCTTACATTCT 58.362 29.630 0.00 0.00 0.00 2.40
411 412 9.260002 CCACAAATTGTTTTAGCTTACATTCTT 57.740 29.630 0.00 0.00 0.00 2.52
421 422 9.855021 TTTTAGCTTACATTCTTGAAATAAGCC 57.145 29.630 23.88 14.47 45.75 4.35
422 423 6.124088 AGCTTACATTCTTGAAATAAGCCG 57.876 37.500 23.88 5.73 45.75 5.52
423 424 4.735338 GCTTACATTCTTGAAATAAGCCGC 59.265 41.667 20.44 7.49 41.12 6.53
424 425 3.782889 ACATTCTTGAAATAAGCCGCC 57.217 42.857 0.00 0.00 0.00 6.13
425 426 3.356290 ACATTCTTGAAATAAGCCGCCT 58.644 40.909 0.00 0.00 0.00 5.52
426 427 3.763897 ACATTCTTGAAATAAGCCGCCTT 59.236 39.130 0.00 0.00 35.05 4.35
427 428 4.947388 ACATTCTTGAAATAAGCCGCCTTA 59.053 37.500 0.00 0.00 37.90 2.69
428 429 4.957759 TTCTTGAAATAAGCCGCCTTAC 57.042 40.909 0.00 0.00 36.43 2.34
429 430 3.945346 TCTTGAAATAAGCCGCCTTACA 58.055 40.909 0.00 0.00 36.43 2.41
430 431 4.328536 TCTTGAAATAAGCCGCCTTACAA 58.671 39.130 0.00 0.00 36.43 2.41
431 432 4.947388 TCTTGAAATAAGCCGCCTTACAAT 59.053 37.500 0.00 0.00 36.43 2.71
432 433 4.630894 TGAAATAAGCCGCCTTACAATG 57.369 40.909 0.00 0.00 36.43 2.82
433 434 4.265893 TGAAATAAGCCGCCTTACAATGA 58.734 39.130 0.00 0.00 36.43 2.57
434 435 4.702612 TGAAATAAGCCGCCTTACAATGAA 59.297 37.500 0.00 0.00 36.43 2.57
435 436 5.184096 TGAAATAAGCCGCCTTACAATGAAA 59.816 36.000 0.00 0.00 36.43 2.69
436 437 5.852282 AATAAGCCGCCTTACAATGAAAT 57.148 34.783 0.00 0.00 36.43 2.17
437 438 5.852282 ATAAGCCGCCTTACAATGAAATT 57.148 34.783 0.00 0.00 36.43 1.82
438 439 6.952773 ATAAGCCGCCTTACAATGAAATTA 57.047 33.333 0.00 0.00 36.43 1.40
439 440 5.852282 AAGCCGCCTTACAATGAAATTAT 57.148 34.783 0.00 0.00 32.46 1.28
440 441 5.438761 AGCCGCCTTACAATGAAATTATC 57.561 39.130 0.00 0.00 32.46 1.75
441 442 4.278419 AGCCGCCTTACAATGAAATTATCC 59.722 41.667 0.00 0.00 32.46 2.59
442 443 4.037446 GCCGCCTTACAATGAAATTATCCA 59.963 41.667 0.00 0.00 32.46 3.41
443 444 5.451242 GCCGCCTTACAATGAAATTATCCAA 60.451 40.000 0.00 0.00 32.46 3.53
444 445 6.568869 CCGCCTTACAATGAAATTATCCAAA 58.431 36.000 0.00 0.00 32.46 3.28
445 446 6.475402 CCGCCTTACAATGAAATTATCCAAAC 59.525 38.462 0.00 0.00 32.46 2.93
446 447 6.475402 CGCCTTACAATGAAATTATCCAAACC 59.525 38.462 0.00 0.00 32.46 3.27
447 448 7.327214 GCCTTACAATGAAATTATCCAAACCA 58.673 34.615 0.00 0.00 32.46 3.67
448 449 7.986889 GCCTTACAATGAAATTATCCAAACCAT 59.013 33.333 0.00 0.00 32.46 3.55
449 450 9.889128 CCTTACAATGAAATTATCCAAACCATT 57.111 29.630 0.00 0.00 32.46 3.16
453 454 9.790344 ACAATGAAATTATCCAAACCATTCAAA 57.210 25.926 0.00 0.00 32.46 2.69
455 456 8.791327 ATGAAATTATCCAAACCATTCAAACC 57.209 30.769 0.00 0.00 0.00 3.27
456 457 7.739825 TGAAATTATCCAAACCATTCAAACCA 58.260 30.769 0.00 0.00 0.00 3.67
457 458 8.381636 TGAAATTATCCAAACCATTCAAACCAT 58.618 29.630 0.00 0.00 0.00 3.55
458 459 9.230122 GAAATTATCCAAACCATTCAAACCATT 57.770 29.630 0.00 0.00 0.00 3.16
459 460 9.585369 AAATTATCCAAACCATTCAAACCATTT 57.415 25.926 0.00 0.00 0.00 2.32
460 461 9.585369 AATTATCCAAACCATTCAAACCATTTT 57.415 25.926 0.00 0.00 0.00 1.82
461 462 8.614469 TTATCCAAACCATTCAAACCATTTTC 57.386 30.769 0.00 0.00 0.00 2.29
462 463 6.245890 TCCAAACCATTCAAACCATTTTCT 57.754 33.333 0.00 0.00 0.00 2.52
463 464 6.287525 TCCAAACCATTCAAACCATTTTCTC 58.712 36.000 0.00 0.00 0.00 2.87
464 465 6.054295 CCAAACCATTCAAACCATTTTCTCA 58.946 36.000 0.00 0.00 0.00 3.27
465 466 6.711645 CCAAACCATTCAAACCATTTTCTCAT 59.288 34.615 0.00 0.00 0.00 2.90
466 467 7.095102 CCAAACCATTCAAACCATTTTCTCATC 60.095 37.037 0.00 0.00 0.00 2.92
469 470 6.270695 ACCATTCAAACCATTTTCTCATCCTT 59.729 34.615 0.00 0.00 0.00 3.36
478 479 3.430042 TTTCTCATCCTTTGCTCTGCT 57.570 42.857 0.00 0.00 0.00 4.24
500 501 1.215014 CTCGCTCACTTCGCACAACA 61.215 55.000 0.00 0.00 0.00 3.33
760 810 0.466189 GTGGATTCCATCACGCCCAT 60.466 55.000 9.01 0.00 35.28 4.00
918 981 2.282391 TGCAGCTGCCGGTTTGAT 60.282 55.556 34.64 0.00 41.18 2.57
922 985 4.133796 GCTGCCGGTTTGATGCCC 62.134 66.667 1.90 0.00 0.00 5.36
930 993 1.666209 GGTTTGATGCCCATCCGGTG 61.666 60.000 0.00 0.00 37.02 4.94
1018 1090 1.194781 AATGACCGTCCAGCAGGAGT 61.195 55.000 0.00 0.00 46.92 3.85
1068 1156 2.579738 GTTGGCGAGGAGGAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
1072 1160 2.438795 GCGAGGAGGAGGACGAGT 60.439 66.667 0.00 0.00 0.00 4.18
1213 1310 1.454663 GAGCCCTCTTGGAATGGCC 60.455 63.158 0.00 0.00 45.14 5.36
1217 1314 0.040204 CCCTCTTGGAATGGCCTGTT 59.960 55.000 3.32 0.00 37.63 3.16
1289 1386 1.816835 CAAGTTGCTCATGCTGGACAT 59.183 47.619 0.00 0.00 40.66 3.06
1346 1443 1.017387 GGCTACCATGTGCAGCTTAC 58.983 55.000 9.47 0.00 35.60 2.34
1392 1489 4.576053 TGCATGTCTACTATTGTTGATGGC 59.424 41.667 0.00 1.44 31.36 4.40
1422 1526 2.428890 AGCCCTCGAGATGTTTACTCTG 59.571 50.000 15.71 0.00 32.87 3.35
1427 1531 2.159421 TCGAGATGTTTACTCTGGTCGC 60.159 50.000 0.00 0.00 32.87 5.19
1430 1534 2.563179 AGATGTTTACTCTGGTCGCTGT 59.437 45.455 0.00 0.00 0.00 4.40
1446 1550 2.851263 CTGTTTACAGCCCTACCACA 57.149 50.000 0.00 0.00 37.15 4.17
1456 1560 4.137543 CAGCCCTACCACATTTTATCTCC 58.862 47.826 0.00 0.00 0.00 3.71
1469 1573 6.931281 ACATTTTATCTCCATCATACCACTCG 59.069 38.462 0.00 0.00 0.00 4.18
1522 1632 4.800471 GGCAGCTGAAAAATGTTATAGCAC 59.200 41.667 20.43 0.00 33.81 4.40
1538 1648 1.226802 CACTGCCTCCTCGATGTCG 60.227 63.158 0.00 0.00 41.45 4.35
1610 1720 4.218635 TCGAATAGCTCAGTGGGATGATAC 59.781 45.833 0.00 0.00 0.00 2.24
1616 1726 1.136891 TCAGTGGGATGATACTGCACG 59.863 52.381 0.00 0.00 43.02 5.34
1674 1784 2.095461 TCTCTGGATGTCAAGACCTCG 58.905 52.381 0.00 0.00 0.00 4.63
1779 1895 4.027065 CGAAACCGAGTCTATGAACTACG 58.973 47.826 0.00 0.00 0.00 3.51
1895 2111 5.512753 TGCTGTCTTTGTAATGCAGAAAA 57.487 34.783 0.00 0.00 0.00 2.29
1938 2154 5.069119 GGAAAGAACTTGTCAAACCAGGAAT 59.931 40.000 0.00 0.00 0.00 3.01
1956 2172 3.259123 GGAATGGTTGCATGGTTTCTTCT 59.741 43.478 0.00 0.00 0.00 2.85
1976 2197 5.252969 TCTTTATTGATCAGCATTGCCAC 57.747 39.130 4.70 0.00 0.00 5.01
2017 2240 5.865552 AGATCAAAACAATTTCAGGAATGCG 59.134 36.000 0.00 0.00 0.00 4.73
2030 2255 6.114187 TCAGGAATGCGTTTATCCATCTAT 57.886 37.500 0.00 0.00 35.62 1.98
2032 2257 7.676004 TCAGGAATGCGTTTATCCATCTATTA 58.324 34.615 0.00 0.00 35.62 0.98
2110 2335 8.621532 TTTAGCTAACACATCTGAAGAACAAT 57.378 30.769 5.45 0.00 0.00 2.71
2121 2346 7.173907 ACATCTGAAGAACAATAGTGGAAACTG 59.826 37.037 0.00 0.00 0.00 3.16
2188 2429 5.698741 TCACTCACATCTTTATCCCACAT 57.301 39.130 0.00 0.00 0.00 3.21
2189 2430 6.065976 TCACTCACATCTTTATCCCACATT 57.934 37.500 0.00 0.00 0.00 2.71
2190 2431 6.115446 TCACTCACATCTTTATCCCACATTC 58.885 40.000 0.00 0.00 0.00 2.67
2191 2432 5.297776 CACTCACATCTTTATCCCACATTCC 59.702 44.000 0.00 0.00 0.00 3.01
2192 2433 4.792068 TCACATCTTTATCCCACATTCCC 58.208 43.478 0.00 0.00 0.00 3.97
2193 2434 4.229353 TCACATCTTTATCCCACATTCCCA 59.771 41.667 0.00 0.00 0.00 4.37
2194 2435 4.339247 CACATCTTTATCCCACATTCCCAC 59.661 45.833 0.00 0.00 0.00 4.61
2195 2436 4.017591 ACATCTTTATCCCACATTCCCACA 60.018 41.667 0.00 0.00 0.00 4.17
2277 2524 2.061848 TGATTTTCCTGTCCTGGTCCA 58.938 47.619 0.00 0.00 0.00 4.02
2344 2592 1.405105 TGCAACTGTTTGACCAAGCTC 59.595 47.619 0.00 0.00 34.24 4.09
2345 2593 1.678101 GCAACTGTTTGACCAAGCTCT 59.322 47.619 0.00 0.00 34.24 4.09
2369 2617 2.088674 GACGGTGCTGGTCTCAGTGT 62.089 60.000 0.00 0.00 42.78 3.55
2373 2621 0.387878 GTGCTGGTCTCAGTGTCTCG 60.388 60.000 0.00 0.00 42.78 4.04
2380 2629 1.000163 GTCTCAGTGTCTCGGCTGAAA 60.000 52.381 0.00 0.00 40.68 2.69
2391 2640 4.025313 GTCTCGGCTGAAATATTCAAGCTC 60.025 45.833 17.27 9.77 39.58 4.09
2426 2675 6.530120 TGATTGCAACCTCTAAGAAGTTACA 58.470 36.000 0.00 0.00 0.00 2.41
2543 2795 1.924524 TGCATCTAGACGCGTTTTAGC 59.075 47.619 15.53 13.89 0.00 3.09
2561 2813 7.787935 CGTTTTAGCGTGTATATTCACTCATTC 59.212 37.037 10.32 0.00 36.33 2.67
2621 2941 6.995091 GCAGTCTCAATCTTCTTGGGTATATT 59.005 38.462 0.00 0.00 0.00 1.28
2645 2965 2.621998 ACTTGCTCAATATCATGCTGCC 59.378 45.455 0.00 0.00 0.00 4.85
2646 2966 1.612676 TGCTCAATATCATGCTGCCC 58.387 50.000 0.00 0.00 0.00 5.36
2661 2981 2.736400 GCTGCCCAGATTATTTGTGTGC 60.736 50.000 0.00 0.00 0.00 4.57
2678 2998 2.031245 TGTGCCGAAAGTTTGCTACATG 60.031 45.455 0.00 0.00 0.00 3.21
2683 3003 3.554524 CGAAAGTTTGCTACATGTGTGG 58.445 45.455 9.11 0.00 0.00 4.17
2695 3015 6.094742 TGCTACATGTGTGGTTTAATGTATGG 59.905 38.462 9.11 0.00 35.55 2.74
2724 3044 6.422776 AACACAATAGGCGTCTTTTCATAG 57.577 37.500 0.00 0.00 0.00 2.23
2725 3045 5.730550 ACACAATAGGCGTCTTTTCATAGA 58.269 37.500 0.00 0.00 0.00 1.98
2726 3046 6.349300 ACACAATAGGCGTCTTTTCATAGAT 58.651 36.000 0.00 0.00 0.00 1.98
2727 3047 6.258727 ACACAATAGGCGTCTTTTCATAGATG 59.741 38.462 0.00 0.00 34.86 2.90
2728 3048 6.479990 CACAATAGGCGTCTTTTCATAGATGA 59.520 38.462 0.00 0.00 33.82 2.92
2729 3049 6.703607 ACAATAGGCGTCTTTTCATAGATGAG 59.296 38.462 0.00 0.00 38.19 2.90
2730 3050 4.744795 AGGCGTCTTTTCATAGATGAGT 57.255 40.909 0.00 0.00 38.19 3.41
2731 3051 5.091261 AGGCGTCTTTTCATAGATGAGTT 57.909 39.130 0.00 0.00 38.19 3.01
2732 3052 5.112686 AGGCGTCTTTTCATAGATGAGTTC 58.887 41.667 0.00 0.00 38.19 3.01
2733 3053 4.271291 GGCGTCTTTTCATAGATGAGTTCC 59.729 45.833 0.00 0.00 38.19 3.62
2734 3054 5.112686 GCGTCTTTTCATAGATGAGTTCCT 58.887 41.667 0.00 0.00 38.19 3.36
2735 3055 5.582665 GCGTCTTTTCATAGATGAGTTCCTT 59.417 40.000 0.00 0.00 38.19 3.36
2745 3065 7.039152 TCATAGATGAGTTCCTTGATGAGGATC 60.039 40.741 0.00 0.00 41.97 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.680237 TGGGCGTCGTGAGGCTTG 62.680 66.667 13.49 0.00 41.51 4.01
1 2 4.681978 GTGGGCGTCGTGAGGCTT 62.682 66.667 13.49 0.00 41.51 4.35
4 5 4.742201 CCAGTGGGCGTCGTGAGG 62.742 72.222 0.00 0.00 0.00 3.86
5 6 3.633094 CTCCAGTGGGCGTCGTGAG 62.633 68.421 9.92 0.00 0.00 3.51
6 7 3.680786 CTCCAGTGGGCGTCGTGA 61.681 66.667 9.92 0.00 0.00 4.35
10 11 4.314440 TGTGCTCCAGTGGGCGTC 62.314 66.667 9.92 9.41 0.00 5.19
11 12 4.320456 CTGTGCTCCAGTGGGCGT 62.320 66.667 9.92 0.00 36.37 5.68
13 14 4.648626 TGCTGTGCTCCAGTGGGC 62.649 66.667 9.92 12.32 43.55 5.36
14 15 2.359602 CTGCTGTGCTCCAGTGGG 60.360 66.667 9.92 0.89 43.55 4.61
15 16 2.359602 CCTGCTGTGCTCCAGTGG 60.360 66.667 1.40 1.40 43.55 4.00
16 17 1.375652 CTCCTGCTGTGCTCCAGTG 60.376 63.158 5.96 0.00 43.55 3.66
17 18 2.591072 CCTCCTGCTGTGCTCCAGT 61.591 63.158 5.96 0.00 43.55 4.00
18 19 2.268280 CCTCCTGCTGTGCTCCAG 59.732 66.667 0.20 0.20 44.53 3.86
19 20 2.203832 TCCTCCTGCTGTGCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
20 21 2.267324 GTCCTCCTGCTGTGCTCC 59.733 66.667 0.00 0.00 0.00 4.70
21 22 2.125753 CGTCCTCCTGCTGTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
22 23 4.385405 GCGTCCTCCTGCTGTGCT 62.385 66.667 0.00 0.00 0.00 4.40
31 32 4.832608 AATTCGGCCGCGTCCTCC 62.833 66.667 23.51 0.00 0.00 4.30
32 33 3.564027 CAATTCGGCCGCGTCCTC 61.564 66.667 23.51 0.00 0.00 3.71
33 34 4.077184 TCAATTCGGCCGCGTCCT 62.077 61.111 23.51 0.00 0.00 3.85
34 35 3.564027 CTCAATTCGGCCGCGTCC 61.564 66.667 23.51 0.00 0.00 4.79
35 36 1.632046 TTTCTCAATTCGGCCGCGTC 61.632 55.000 23.51 0.00 0.00 5.19
36 37 1.635663 CTTTCTCAATTCGGCCGCGT 61.636 55.000 23.51 8.52 0.00 6.01
37 38 1.060937 CTTTCTCAATTCGGCCGCG 59.939 57.895 23.51 8.93 0.00 6.46
38 39 1.226407 GCTTTCTCAATTCGGCCGC 60.226 57.895 23.51 0.00 0.00 6.53
39 40 1.305219 TGGCTTTCTCAATTCGGCCG 61.305 55.000 22.12 22.12 42.11 6.13
40 41 0.171231 GTGGCTTTCTCAATTCGGCC 59.829 55.000 0.00 0.00 39.93 6.13
41 42 0.171231 GGTGGCTTTCTCAATTCGGC 59.829 55.000 0.00 0.00 0.00 5.54
42 43 0.447801 CGGTGGCTTTCTCAATTCGG 59.552 55.000 0.00 0.00 0.00 4.30
43 44 0.447801 CCGGTGGCTTTCTCAATTCG 59.552 55.000 0.00 0.00 0.00 3.34
44 45 0.811281 CCCGGTGGCTTTCTCAATTC 59.189 55.000 0.00 0.00 0.00 2.17
45 46 0.404040 TCCCGGTGGCTTTCTCAATT 59.596 50.000 0.00 0.00 0.00 2.32
46 47 0.035056 CTCCCGGTGGCTTTCTCAAT 60.035 55.000 0.00 0.00 0.00 2.57
47 48 1.374947 CTCCCGGTGGCTTTCTCAA 59.625 57.895 0.00 0.00 0.00 3.02
48 49 2.592993 CCTCCCGGTGGCTTTCTCA 61.593 63.158 0.00 0.00 0.00 3.27
49 50 2.245438 CTCCTCCCGGTGGCTTTCTC 62.245 65.000 0.00 0.00 0.00 2.87
50 51 2.203938 TCCTCCCGGTGGCTTTCT 60.204 61.111 0.00 0.00 0.00 2.52
51 52 2.269241 CTCCTCCCGGTGGCTTTC 59.731 66.667 0.00 0.00 0.00 2.62
52 53 3.330720 CCTCCTCCCGGTGGCTTT 61.331 66.667 0.00 0.00 37.16 3.51
74 75 2.185608 GGAGGTTGAGAGGCGCTC 59.814 66.667 11.63 11.63 44.21 5.03
75 76 3.764466 CGGAGGTTGAGAGGCGCT 61.764 66.667 7.64 0.00 0.00 5.92
76 77 3.991536 GACGGAGGTTGAGAGGCGC 62.992 68.421 0.00 0.00 0.00 6.53
77 78 2.182030 GACGGAGGTTGAGAGGCG 59.818 66.667 0.00 0.00 0.00 5.52
78 79 2.579738 GGACGGAGGTTGAGAGGC 59.420 66.667 0.00 0.00 0.00 4.70
79 80 2.359967 GGGGACGGAGGTTGAGAGG 61.360 68.421 0.00 0.00 0.00 3.69
80 81 3.300013 GGGGACGGAGGTTGAGAG 58.700 66.667 0.00 0.00 0.00 3.20
92 93 2.920912 TCAGTGGTGGTCGGGGAC 60.921 66.667 0.00 0.00 0.00 4.46
93 94 2.920912 GTCAGTGGTGGTCGGGGA 60.921 66.667 0.00 0.00 0.00 4.81
94 95 2.332312 TTTGTCAGTGGTGGTCGGGG 62.332 60.000 0.00 0.00 0.00 5.73
95 96 0.884704 CTTTGTCAGTGGTGGTCGGG 60.885 60.000 0.00 0.00 0.00 5.14
96 97 0.105964 TCTTTGTCAGTGGTGGTCGG 59.894 55.000 0.00 0.00 0.00 4.79
97 98 1.867233 CTTCTTTGTCAGTGGTGGTCG 59.133 52.381 0.00 0.00 0.00 4.79
98 99 2.872858 GTCTTCTTTGTCAGTGGTGGTC 59.127 50.000 0.00 0.00 0.00 4.02
99 100 2.238646 TGTCTTCTTTGTCAGTGGTGGT 59.761 45.455 0.00 0.00 0.00 4.16
100 101 2.917933 TGTCTTCTTTGTCAGTGGTGG 58.082 47.619 0.00 0.00 0.00 4.61
101 102 3.304257 GCATGTCTTCTTTGTCAGTGGTG 60.304 47.826 0.00 0.00 0.00 4.17
102 103 2.880890 GCATGTCTTCTTTGTCAGTGGT 59.119 45.455 0.00 0.00 0.00 4.16
103 104 2.227388 GGCATGTCTTCTTTGTCAGTGG 59.773 50.000 0.00 0.00 0.00 4.00
104 105 2.096069 CGGCATGTCTTCTTTGTCAGTG 60.096 50.000 0.00 0.00 0.00 3.66
105 106 2.146342 CGGCATGTCTTCTTTGTCAGT 58.854 47.619 0.00 0.00 0.00 3.41
106 107 2.416747 TCGGCATGTCTTCTTTGTCAG 58.583 47.619 0.00 0.00 0.00 3.51
107 108 2.542020 TCGGCATGTCTTCTTTGTCA 57.458 45.000 0.00 0.00 0.00 3.58
108 109 2.808543 ACTTCGGCATGTCTTCTTTGTC 59.191 45.455 0.00 0.00 0.00 3.18
109 110 2.808543 GACTTCGGCATGTCTTCTTTGT 59.191 45.455 0.00 0.00 0.00 2.83
110 111 2.807967 TGACTTCGGCATGTCTTCTTTG 59.192 45.455 0.00 0.00 34.57 2.77
111 112 2.808543 GTGACTTCGGCATGTCTTCTTT 59.191 45.455 0.00 0.00 34.57 2.52
112 113 2.224281 TGTGACTTCGGCATGTCTTCTT 60.224 45.455 0.00 0.00 34.57 2.52
113 114 1.344438 TGTGACTTCGGCATGTCTTCT 59.656 47.619 0.00 0.00 34.57 2.85
114 115 1.461127 GTGTGACTTCGGCATGTCTTC 59.539 52.381 0.00 0.00 34.57 2.87
115 116 1.512926 GTGTGACTTCGGCATGTCTT 58.487 50.000 0.00 0.00 34.57 3.01
116 117 0.320771 GGTGTGACTTCGGCATGTCT 60.321 55.000 0.00 0.00 34.57 3.41
117 118 1.626654 CGGTGTGACTTCGGCATGTC 61.627 60.000 0.00 0.00 0.00 3.06
118 119 1.667830 CGGTGTGACTTCGGCATGT 60.668 57.895 0.00 0.00 0.00 3.21
119 120 3.027170 GCGGTGTGACTTCGGCATG 62.027 63.158 0.00 0.00 0.00 4.06
120 121 2.742372 GCGGTGTGACTTCGGCAT 60.742 61.111 6.18 0.00 0.00 4.40
121 122 4.228567 TGCGGTGTGACTTCGGCA 62.229 61.111 8.69 8.69 37.51 5.69
122 123 3.712881 GTGCGGTGTGACTTCGGC 61.713 66.667 1.23 3.07 0.00 5.54
123 124 3.041940 GGTGCGGTGTGACTTCGG 61.042 66.667 1.23 0.00 0.00 4.30
124 125 3.403057 CGGTGCGGTGTGACTTCG 61.403 66.667 0.00 0.00 0.00 3.79
125 126 3.712881 GCGGTGCGGTGTGACTTC 61.713 66.667 0.00 0.00 0.00 3.01
152 153 2.657237 GAGGGAGGGACACACGTG 59.343 66.667 15.48 15.48 0.00 4.49
153 154 2.603776 GGAGGGAGGGACACACGT 60.604 66.667 0.00 0.00 0.00 4.49
154 155 3.391382 GGGAGGGAGGGACACACG 61.391 72.222 0.00 0.00 0.00 4.49
155 156 3.009714 GGGGAGGGAGGGACACAC 61.010 72.222 0.00 0.00 0.00 3.82
156 157 4.348495 GGGGGAGGGAGGGACACA 62.348 72.222 0.00 0.00 0.00 3.72
157 158 4.348495 TGGGGGAGGGAGGGACAC 62.348 72.222 0.00 0.00 0.00 3.67
158 159 4.348495 GTGGGGGAGGGAGGGACA 62.348 72.222 0.00 0.00 0.00 4.02
159 160 4.348495 TGTGGGGGAGGGAGGGAC 62.348 72.222 0.00 0.00 0.00 4.46
160 161 4.348495 GTGTGGGGGAGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
161 162 4.675303 TGTGTGGGGGAGGGAGGG 62.675 72.222 0.00 0.00 0.00 4.30
162 163 3.330720 GTGTGTGGGGGAGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
163 164 1.715019 TTTGTGTGTGGGGGAGGGAG 61.715 60.000 0.00 0.00 0.00 4.30
164 165 1.071314 ATTTGTGTGTGGGGGAGGGA 61.071 55.000 0.00 0.00 0.00 4.20
165 166 0.899717 CATTTGTGTGTGGGGGAGGG 60.900 60.000 0.00 0.00 0.00 4.30
166 167 0.899717 CCATTTGTGTGTGGGGGAGG 60.900 60.000 0.00 0.00 0.00 4.30
167 168 0.112218 TCCATTTGTGTGTGGGGGAG 59.888 55.000 0.00 0.00 36.15 4.30
168 169 0.558220 TTCCATTTGTGTGTGGGGGA 59.442 50.000 0.00 0.00 36.15 4.81
169 170 1.344114 CTTTCCATTTGTGTGTGGGGG 59.656 52.381 0.00 0.00 36.15 5.40
170 171 2.035832 GTCTTTCCATTTGTGTGTGGGG 59.964 50.000 0.00 0.00 36.15 4.96
171 172 2.287547 CGTCTTTCCATTTGTGTGTGGG 60.288 50.000 0.00 0.00 36.15 4.61
172 173 2.858260 GCGTCTTTCCATTTGTGTGTGG 60.858 50.000 0.00 0.00 36.82 4.17
173 174 2.384382 GCGTCTTTCCATTTGTGTGTG 58.616 47.619 0.00 0.00 0.00 3.82
174 175 1.336755 GGCGTCTTTCCATTTGTGTGT 59.663 47.619 0.00 0.00 0.00 3.72
175 176 1.335872 GGGCGTCTTTCCATTTGTGTG 60.336 52.381 0.00 0.00 0.00 3.82
176 177 0.958822 GGGCGTCTTTCCATTTGTGT 59.041 50.000 0.00 0.00 0.00 3.72
177 178 0.243636 GGGGCGTCTTTCCATTTGTG 59.756 55.000 0.00 0.00 0.00 3.33
178 179 1.241315 CGGGGCGTCTTTCCATTTGT 61.241 55.000 0.00 0.00 0.00 2.83
179 180 1.506262 CGGGGCGTCTTTCCATTTG 59.494 57.895 0.00 0.00 0.00 2.32
180 181 2.340328 GCGGGGCGTCTTTCCATTT 61.340 57.895 0.00 0.00 0.00 2.32
181 182 2.750237 GCGGGGCGTCTTTCCATT 60.750 61.111 0.00 0.00 0.00 3.16
182 183 4.796495 GGCGGGGCGTCTTTCCAT 62.796 66.667 0.00 0.00 0.00 3.41
185 186 3.733960 GTTGGCGGGGCGTCTTTC 61.734 66.667 0.00 0.00 30.55 2.62
197 198 3.499737 CACGGATCTGGCGTTGGC 61.500 66.667 6.47 0.00 38.90 4.52
198 199 3.499737 GCACGGATCTGGCGTTGG 61.500 66.667 6.47 0.00 0.00 3.77
199 200 3.853330 CGCACGGATCTGGCGTTG 61.853 66.667 21.94 7.23 45.27 4.10
204 205 4.473520 AAGCCCGCACGGATCTGG 62.474 66.667 11.42 0.00 37.50 3.86
205 206 2.892425 GAAGCCCGCACGGATCTG 60.892 66.667 11.42 0.00 37.50 2.90
206 207 4.514577 CGAAGCCCGCACGGATCT 62.515 66.667 11.42 4.32 37.50 2.75
225 226 2.108362 GTCAATAGACCCCGCCGG 59.892 66.667 0.00 0.00 38.89 6.13
226 227 2.279252 CGTCAATAGACCCCGCCG 60.279 66.667 0.00 0.00 41.87 6.46
227 228 2.108362 CCGTCAATAGACCCCGCC 59.892 66.667 0.00 0.00 41.87 6.13
228 229 2.588034 GCCGTCAATAGACCCCGC 60.588 66.667 0.00 0.00 41.87 6.13
229 230 2.279252 CGCCGTCAATAGACCCCG 60.279 66.667 0.00 0.00 41.87 5.73
230 231 1.394266 TACCGCCGTCAATAGACCCC 61.394 60.000 0.00 0.00 41.87 4.95
231 232 0.677842 ATACCGCCGTCAATAGACCC 59.322 55.000 0.00 0.00 41.87 4.46
232 233 1.338973 TCATACCGCCGTCAATAGACC 59.661 52.381 0.00 0.00 41.87 3.85
233 234 2.787601 TCATACCGCCGTCAATAGAC 57.212 50.000 0.00 0.00 41.46 2.59
234 235 2.035449 CCTTCATACCGCCGTCAATAGA 59.965 50.000 0.00 0.00 0.00 1.98
235 236 2.035449 TCCTTCATACCGCCGTCAATAG 59.965 50.000 0.00 0.00 0.00 1.73
236 237 2.033372 TCCTTCATACCGCCGTCAATA 58.967 47.619 0.00 0.00 0.00 1.90
237 238 0.828022 TCCTTCATACCGCCGTCAAT 59.172 50.000 0.00 0.00 0.00 2.57
238 239 0.174845 CTCCTTCATACCGCCGTCAA 59.825 55.000 0.00 0.00 0.00 3.18
239 240 1.672854 CCTCCTTCATACCGCCGTCA 61.673 60.000 0.00 0.00 0.00 4.35
240 241 1.067582 CCTCCTTCATACCGCCGTC 59.932 63.158 0.00 0.00 0.00 4.79
241 242 2.432300 CCCTCCTTCATACCGCCGT 61.432 63.158 0.00 0.00 0.00 5.68
242 243 2.421739 CCCTCCTTCATACCGCCG 59.578 66.667 0.00 0.00 0.00 6.46
243 244 2.829592 CCCCTCCTTCATACCGCC 59.170 66.667 0.00 0.00 0.00 6.13
244 245 2.111251 GCCCCTCCTTCATACCGC 59.889 66.667 0.00 0.00 0.00 5.68
245 246 1.048724 TCTGCCCCTCCTTCATACCG 61.049 60.000 0.00 0.00 0.00 4.02
246 247 0.761802 CTCTGCCCCTCCTTCATACC 59.238 60.000 0.00 0.00 0.00 2.73
247 248 0.107643 GCTCTGCCCCTCCTTCATAC 59.892 60.000 0.00 0.00 0.00 2.39
248 249 1.402896 CGCTCTGCCCCTCCTTCATA 61.403 60.000 0.00 0.00 0.00 2.15
249 250 2.739996 CGCTCTGCCCCTCCTTCAT 61.740 63.158 0.00 0.00 0.00 2.57
250 251 3.393970 CGCTCTGCCCCTCCTTCA 61.394 66.667 0.00 0.00 0.00 3.02
251 252 4.168291 CCGCTCTGCCCCTCCTTC 62.168 72.222 0.00 0.00 0.00 3.46
260 261 4.168291 CTTCCCCTCCCGCTCTGC 62.168 72.222 0.00 0.00 0.00 4.26
261 262 1.842381 AAACTTCCCCTCCCGCTCTG 61.842 60.000 0.00 0.00 0.00 3.35
262 263 1.539124 AAACTTCCCCTCCCGCTCT 60.539 57.895 0.00 0.00 0.00 4.09
263 264 1.377333 CAAACTTCCCCTCCCGCTC 60.377 63.158 0.00 0.00 0.00 5.03
264 265 1.846124 TCAAACTTCCCCTCCCGCT 60.846 57.895 0.00 0.00 0.00 5.52
265 266 1.674651 GTCAAACTTCCCCTCCCGC 60.675 63.158 0.00 0.00 0.00 6.13
266 267 1.002502 GGTCAAACTTCCCCTCCCG 60.003 63.158 0.00 0.00 0.00 5.14
267 268 1.002502 CGGTCAAACTTCCCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
268 269 1.002502 CCGGTCAAACTTCCCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
269 270 1.002502 CCCGGTCAAACTTCCCCTC 60.003 63.158 0.00 0.00 0.00 4.30
270 271 2.535331 CCCCGGTCAAACTTCCCCT 61.535 63.158 0.00 0.00 0.00 4.79
271 272 2.035155 CCCCGGTCAAACTTCCCC 59.965 66.667 0.00 0.00 0.00 4.81
272 273 1.002502 CTCCCCGGTCAAACTTCCC 60.003 63.158 0.00 0.00 0.00 3.97
273 274 0.036294 CTCTCCCCGGTCAAACTTCC 60.036 60.000 0.00 0.00 0.00 3.46
274 275 0.036294 CCTCTCCCCGGTCAAACTTC 60.036 60.000 0.00 0.00 0.00 3.01
275 276 2.067197 CCTCTCCCCGGTCAAACTT 58.933 57.895 0.00 0.00 0.00 2.66
276 277 2.593956 GCCTCTCCCCGGTCAAACT 61.594 63.158 0.00 0.00 0.00 2.66
277 278 2.046217 GCCTCTCCCCGGTCAAAC 60.046 66.667 0.00 0.00 0.00 2.93
278 279 0.545787 TAAGCCTCTCCCCGGTCAAA 60.546 55.000 0.00 0.00 0.00 2.69
279 280 0.976073 CTAAGCCTCTCCCCGGTCAA 60.976 60.000 0.00 0.00 0.00 3.18
280 281 1.381327 CTAAGCCTCTCCCCGGTCA 60.381 63.158 0.00 0.00 0.00 4.02
281 282 0.106318 TACTAAGCCTCTCCCCGGTC 60.106 60.000 0.00 0.00 0.00 4.79
282 283 0.561680 ATACTAAGCCTCTCCCCGGT 59.438 55.000 0.00 0.00 0.00 5.28
283 284 1.619332 GAATACTAAGCCTCTCCCCGG 59.381 57.143 0.00 0.00 0.00 5.73
284 285 2.559231 GAGAATACTAAGCCTCTCCCCG 59.441 54.545 0.00 0.00 0.00 5.73
285 286 3.577919 TGAGAATACTAAGCCTCTCCCC 58.422 50.000 0.00 0.00 34.62 4.81
286 287 5.305644 TCAATGAGAATACTAAGCCTCTCCC 59.694 44.000 0.00 0.00 34.62 4.30
287 288 6.183360 TGTCAATGAGAATACTAAGCCTCTCC 60.183 42.308 0.00 0.00 34.62 3.71
288 289 6.810911 TGTCAATGAGAATACTAAGCCTCTC 58.189 40.000 0.00 0.00 35.82 3.20
289 290 6.798427 TGTCAATGAGAATACTAAGCCTCT 57.202 37.500 0.00 0.00 0.00 3.69
290 291 9.717942 ATAATGTCAATGAGAATACTAAGCCTC 57.282 33.333 0.00 0.00 0.00 4.70
345 346 5.160641 GCGGAAATCTTGCAGATGTAAAAA 58.839 37.500 0.00 0.00 34.65 1.94
346 347 4.217334 TGCGGAAATCTTGCAGATGTAAAA 59.783 37.500 0.00 0.00 34.65 1.52
347 348 3.755905 TGCGGAAATCTTGCAGATGTAAA 59.244 39.130 0.00 0.00 34.65 2.01
348 349 3.342719 TGCGGAAATCTTGCAGATGTAA 58.657 40.909 0.00 0.00 34.65 2.41
349 350 2.984562 TGCGGAAATCTTGCAGATGTA 58.015 42.857 0.00 0.00 34.65 2.29
350 351 1.825090 TGCGGAAATCTTGCAGATGT 58.175 45.000 0.00 0.00 34.65 3.06
351 352 2.925578 TTGCGGAAATCTTGCAGATG 57.074 45.000 0.00 0.00 40.15 2.90
352 353 3.429822 CCATTTGCGGAAATCTTGCAGAT 60.430 43.478 12.36 0.00 40.15 2.90
353 354 2.094597 CCATTTGCGGAAATCTTGCAGA 60.095 45.455 12.36 0.00 40.15 4.26
354 355 2.264813 CCATTTGCGGAAATCTTGCAG 58.735 47.619 12.36 0.18 40.15 4.41
355 356 1.617850 ACCATTTGCGGAAATCTTGCA 59.382 42.857 12.36 0.00 36.72 4.08
356 357 1.994779 CACCATTTGCGGAAATCTTGC 59.005 47.619 12.36 0.00 28.65 4.01
357 358 3.302365 ACACCATTTGCGGAAATCTTG 57.698 42.857 12.36 13.76 28.65 3.02
358 359 4.335400 AAACACCATTTGCGGAAATCTT 57.665 36.364 12.36 0.00 28.65 2.40
359 360 4.039124 AGAAAACACCATTTGCGGAAATCT 59.961 37.500 12.36 2.06 28.65 2.40
360 361 4.306600 AGAAAACACCATTTGCGGAAATC 58.693 39.130 12.36 0.00 28.65 2.17
361 362 4.335400 AGAAAACACCATTTGCGGAAAT 57.665 36.364 9.31 9.31 31.52 2.17
362 363 3.810310 AGAAAACACCATTTGCGGAAA 57.190 38.095 4.04 4.04 0.00 3.13
363 364 3.810310 AAGAAAACACCATTTGCGGAA 57.190 38.095 0.00 0.00 0.00 4.30
364 365 3.491792 GGAAAGAAAACACCATTTGCGGA 60.492 43.478 0.00 0.00 0.00 5.54
365 366 2.799978 GGAAAGAAAACACCATTTGCGG 59.200 45.455 0.00 0.00 0.00 5.69
366 367 3.245048 GTGGAAAGAAAACACCATTTGCG 59.755 43.478 0.00 0.00 34.87 4.85
367 368 4.187694 TGTGGAAAGAAAACACCATTTGC 58.812 39.130 0.00 0.00 34.87 3.68
368 369 6.734104 TTTGTGGAAAGAAAACACCATTTG 57.266 33.333 0.00 0.00 34.87 2.32
369 370 7.392953 ACAATTTGTGGAAAGAAAACACCATTT 59.607 29.630 0.15 0.00 34.87 2.32
370 371 6.883756 ACAATTTGTGGAAAGAAAACACCATT 59.116 30.769 0.15 0.00 34.87 3.16
371 372 6.413892 ACAATTTGTGGAAAGAAAACACCAT 58.586 32.000 0.15 0.00 34.87 3.55
372 373 5.799213 ACAATTTGTGGAAAGAAAACACCA 58.201 33.333 0.15 0.00 34.33 4.17
373 374 6.735678 AACAATTTGTGGAAAGAAAACACC 57.264 33.333 2.13 0.00 34.33 4.16
374 375 9.753669 CTAAAACAATTTGTGGAAAGAAAACAC 57.246 29.630 2.13 0.00 35.75 3.32
375 376 8.447053 GCTAAAACAATTTGTGGAAAGAAAACA 58.553 29.630 2.13 0.00 0.00 2.83
376 377 8.664798 AGCTAAAACAATTTGTGGAAAGAAAAC 58.335 29.630 2.13 0.00 0.00 2.43
377 378 8.785329 AGCTAAAACAATTTGTGGAAAGAAAA 57.215 26.923 2.13 0.00 0.00 2.29
378 379 8.785329 AAGCTAAAACAATTTGTGGAAAGAAA 57.215 26.923 2.13 0.00 0.00 2.52
379 380 9.308318 GTAAGCTAAAACAATTTGTGGAAAGAA 57.692 29.630 2.13 0.00 0.00 2.52
380 381 8.470805 TGTAAGCTAAAACAATTTGTGGAAAGA 58.529 29.630 2.13 0.00 0.00 2.52
381 382 8.641499 TGTAAGCTAAAACAATTTGTGGAAAG 57.359 30.769 2.13 0.69 0.00 2.62
382 383 9.606631 AATGTAAGCTAAAACAATTTGTGGAAA 57.393 25.926 2.13 0.00 0.00 3.13
383 384 9.255304 GAATGTAAGCTAAAACAATTTGTGGAA 57.745 29.630 2.13 0.00 0.00 3.53
384 385 8.637986 AGAATGTAAGCTAAAACAATTTGTGGA 58.362 29.630 2.13 0.00 0.00 4.02
385 386 8.816640 AGAATGTAAGCTAAAACAATTTGTGG 57.183 30.769 2.13 0.00 0.00 4.17
395 396 9.855021 GGCTTATTTCAAGAATGTAAGCTAAAA 57.145 29.630 24.05 0.00 40.63 1.52
396 397 8.181573 CGGCTTATTTCAAGAATGTAAGCTAAA 58.818 33.333 24.05 0.00 40.63 1.85
397 398 7.678690 GCGGCTTATTTCAAGAATGTAAGCTAA 60.679 37.037 24.05 0.00 40.63 3.09
398 399 6.238374 GCGGCTTATTTCAAGAATGTAAGCTA 60.238 38.462 24.05 0.00 40.63 3.32
399 400 5.449177 GCGGCTTATTTCAAGAATGTAAGCT 60.449 40.000 24.05 0.00 40.63 3.74
400 401 4.735338 GCGGCTTATTTCAAGAATGTAAGC 59.265 41.667 20.58 20.58 40.38 3.09
401 402 5.066505 AGGCGGCTTATTTCAAGAATGTAAG 59.933 40.000 5.25 9.38 0.00 2.34
402 403 4.947388 AGGCGGCTTATTTCAAGAATGTAA 59.053 37.500 5.25 0.00 0.00 2.41
403 404 4.523083 AGGCGGCTTATTTCAAGAATGTA 58.477 39.130 5.25 0.00 0.00 2.29
404 405 3.356290 AGGCGGCTTATTTCAAGAATGT 58.644 40.909 5.25 0.00 0.00 2.71
405 406 4.376340 AAGGCGGCTTATTTCAAGAATG 57.624 40.909 24.31 0.00 0.00 2.67
406 407 4.947388 TGTAAGGCGGCTTATTTCAAGAAT 59.053 37.500 30.98 5.69 0.00 2.40
407 408 4.328536 TGTAAGGCGGCTTATTTCAAGAA 58.671 39.130 30.98 7.81 0.00 2.52
408 409 3.945346 TGTAAGGCGGCTTATTTCAAGA 58.055 40.909 30.98 8.61 0.00 3.02
409 410 4.695217 TTGTAAGGCGGCTTATTTCAAG 57.305 40.909 30.98 0.00 0.00 3.02
410 411 4.702612 TCATTGTAAGGCGGCTTATTTCAA 59.297 37.500 30.98 27.69 0.00 2.69
411 412 4.265893 TCATTGTAAGGCGGCTTATTTCA 58.734 39.130 30.98 22.05 0.00 2.69
412 413 4.893424 TCATTGTAAGGCGGCTTATTTC 57.107 40.909 30.98 19.91 0.00 2.17
413 414 5.652994 TTTCATTGTAAGGCGGCTTATTT 57.347 34.783 30.98 17.36 0.00 1.40
414 415 5.852282 ATTTCATTGTAAGGCGGCTTATT 57.148 34.783 30.98 17.68 0.00 1.40
415 416 5.852282 AATTTCATTGTAAGGCGGCTTAT 57.148 34.783 30.98 16.25 0.00 1.73
416 417 6.016610 GGATAATTTCATTGTAAGGCGGCTTA 60.017 38.462 25.92 25.92 0.00 3.09
417 418 5.221244 GGATAATTTCATTGTAAGGCGGCTT 60.221 40.000 28.23 28.23 0.00 4.35
418 419 4.278419 GGATAATTTCATTGTAAGGCGGCT 59.722 41.667 5.25 5.25 0.00 5.52
419 420 4.037446 TGGATAATTTCATTGTAAGGCGGC 59.963 41.667 0.00 0.00 0.00 6.53
420 421 5.766150 TGGATAATTTCATTGTAAGGCGG 57.234 39.130 0.00 0.00 0.00 6.13
421 422 6.475402 GGTTTGGATAATTTCATTGTAAGGCG 59.525 38.462 0.00 0.00 0.00 5.52
422 423 7.327214 TGGTTTGGATAATTTCATTGTAAGGC 58.673 34.615 0.00 0.00 0.00 4.35
423 424 9.889128 AATGGTTTGGATAATTTCATTGTAAGG 57.111 29.630 0.00 0.00 0.00 2.69
427 428 9.790344 TTTGAATGGTTTGGATAATTTCATTGT 57.210 25.926 0.00 0.00 0.00 2.71
429 430 9.230122 GGTTTGAATGGTTTGGATAATTTCATT 57.770 29.630 0.00 0.00 0.00 2.57
430 431 8.381636 TGGTTTGAATGGTTTGGATAATTTCAT 58.618 29.630 0.00 0.00 0.00 2.57
431 432 7.739825 TGGTTTGAATGGTTTGGATAATTTCA 58.260 30.769 0.00 0.00 0.00 2.69
432 433 8.791327 ATGGTTTGAATGGTTTGGATAATTTC 57.209 30.769 0.00 0.00 0.00 2.17
433 434 9.585369 AAATGGTTTGAATGGTTTGGATAATTT 57.415 25.926 0.00 0.00 0.00 1.82
434 435 9.585369 AAAATGGTTTGAATGGTTTGGATAATT 57.415 25.926 0.00 0.00 0.00 1.40
435 436 9.230122 GAAAATGGTTTGAATGGTTTGGATAAT 57.770 29.630 0.00 0.00 0.00 1.28
436 437 8.435982 AGAAAATGGTTTGAATGGTTTGGATAA 58.564 29.630 0.00 0.00 0.00 1.75
437 438 7.972301 AGAAAATGGTTTGAATGGTTTGGATA 58.028 30.769 0.00 0.00 0.00 2.59
438 439 6.840527 AGAAAATGGTTTGAATGGTTTGGAT 58.159 32.000 0.00 0.00 0.00 3.41
439 440 6.126940 TGAGAAAATGGTTTGAATGGTTTGGA 60.127 34.615 0.00 0.00 0.00 3.53
440 441 6.054295 TGAGAAAATGGTTTGAATGGTTTGG 58.946 36.000 0.00 0.00 0.00 3.28
441 442 7.095102 GGATGAGAAAATGGTTTGAATGGTTTG 60.095 37.037 0.00 0.00 0.00 2.93
442 443 6.936335 GGATGAGAAAATGGTTTGAATGGTTT 59.064 34.615 0.00 0.00 0.00 3.27
443 444 6.270695 AGGATGAGAAAATGGTTTGAATGGTT 59.729 34.615 0.00 0.00 0.00 3.67
444 445 5.781818 AGGATGAGAAAATGGTTTGAATGGT 59.218 36.000 0.00 0.00 0.00 3.55
445 446 6.290294 AGGATGAGAAAATGGTTTGAATGG 57.710 37.500 0.00 0.00 0.00 3.16
446 447 7.360607 GCAAAGGATGAGAAAATGGTTTGAATG 60.361 37.037 0.00 0.00 0.00 2.67
447 448 6.652062 GCAAAGGATGAGAAAATGGTTTGAAT 59.348 34.615 0.00 0.00 0.00 2.57
448 449 5.990996 GCAAAGGATGAGAAAATGGTTTGAA 59.009 36.000 0.00 0.00 0.00 2.69
449 450 5.305128 AGCAAAGGATGAGAAAATGGTTTGA 59.695 36.000 0.00 0.00 0.00 2.69
450 451 5.544650 AGCAAAGGATGAGAAAATGGTTTG 58.455 37.500 0.00 0.00 0.00 2.93
451 452 5.541484 AGAGCAAAGGATGAGAAAATGGTTT 59.459 36.000 0.00 0.00 0.00 3.27
452 453 5.047519 CAGAGCAAAGGATGAGAAAATGGTT 60.048 40.000 0.00 0.00 0.00 3.67
453 454 4.461781 CAGAGCAAAGGATGAGAAAATGGT 59.538 41.667 0.00 0.00 0.00 3.55
454 455 4.677250 GCAGAGCAAAGGATGAGAAAATGG 60.677 45.833 0.00 0.00 0.00 3.16
455 456 4.158025 AGCAGAGCAAAGGATGAGAAAATG 59.842 41.667 0.00 0.00 0.00 2.32
456 457 4.342359 AGCAGAGCAAAGGATGAGAAAAT 58.658 39.130 0.00 0.00 0.00 1.82
457 458 3.755378 GAGCAGAGCAAAGGATGAGAAAA 59.245 43.478 0.00 0.00 0.00 2.29
458 459 3.341823 GAGCAGAGCAAAGGATGAGAAA 58.658 45.455 0.00 0.00 0.00 2.52
459 460 2.676176 CGAGCAGAGCAAAGGATGAGAA 60.676 50.000 0.00 0.00 0.00 2.87
460 461 1.134877 CGAGCAGAGCAAAGGATGAGA 60.135 52.381 0.00 0.00 0.00 3.27
461 462 1.288350 CGAGCAGAGCAAAGGATGAG 58.712 55.000 0.00 0.00 0.00 2.90
462 463 0.742281 GCGAGCAGAGCAAAGGATGA 60.742 55.000 0.00 0.00 34.19 2.92
463 464 0.743701 AGCGAGCAGAGCAAAGGATG 60.744 55.000 0.00 0.00 37.01 3.51
464 465 0.461693 GAGCGAGCAGAGCAAAGGAT 60.462 55.000 0.00 0.00 37.01 3.24
465 466 1.079543 GAGCGAGCAGAGCAAAGGA 60.080 57.895 0.00 0.00 37.01 3.36
466 467 2.451167 CGAGCGAGCAGAGCAAAGG 61.451 63.158 0.00 0.00 37.01 3.11
469 470 3.978723 GAGCGAGCGAGCAGAGCAA 62.979 63.158 9.01 0.00 40.15 3.91
478 479 4.038080 TGCGAAGTGAGCGAGCGA 62.038 61.111 0.00 0.00 37.44 4.93
721 768 2.505819 ACCTTTGTCGATGGCTAATCCT 59.494 45.455 0.00 0.00 35.26 3.24
760 810 1.526887 GGCGGAGGGATGATGTTCA 59.473 57.895 0.00 0.00 0.00 3.18
918 981 2.033448 GTGAACACCGGATGGGCA 59.967 61.111 9.46 2.83 40.62 5.36
922 985 1.535462 GAGGTTTGTGAACACCGGATG 59.465 52.381 9.46 5.32 38.21 3.51
1018 1090 2.257980 CGCAAATTCGGCAAGGCA 59.742 55.556 3.37 0.00 0.00 4.75
1072 1160 1.186200 CAGATGACCCTGAACGAGGA 58.814 55.000 0.00 0.00 46.33 3.71
1201 1294 0.322456 CGGAACAGGCCATTCCAAGA 60.322 55.000 28.84 0.00 45.15 3.02
1213 1310 2.348218 GCACGTAGTTGAAACGGAACAG 60.348 50.000 0.00 0.00 41.61 3.16
1217 1314 0.248990 ACGCACGTAGTTGAAACGGA 60.249 50.000 0.00 0.00 41.61 4.69
1346 1443 0.109342 ACTCTGTCCAGGCTGGTTTG 59.891 55.000 31.60 21.22 39.03 2.93
1392 1489 3.423162 CTCGAGGGCTCCTTCTGCG 62.423 68.421 3.91 0.00 31.76 5.18
1427 1531 2.851263 TGTGGTAGGGCTGTAAACAG 57.149 50.000 5.73 5.73 46.40 3.16
1430 1534 6.727394 AGATAAAATGTGGTAGGGCTGTAAA 58.273 36.000 0.00 0.00 0.00 2.01
1446 1550 7.155328 GTCGAGTGGTATGATGGAGATAAAAT 58.845 38.462 0.00 0.00 0.00 1.82
1456 1560 5.382303 GTTGTTTTGTCGAGTGGTATGATG 58.618 41.667 0.00 0.00 0.00 3.07
1469 1573 2.571206 GAGATTCGCCGTTGTTTTGTC 58.429 47.619 0.00 0.00 0.00 3.18
1522 1632 1.448119 TAGCGACATCGAGGAGGCAG 61.448 60.000 16.47 0.27 43.02 4.85
1610 1720 2.026014 GCAACAACCCACGTGCAG 59.974 61.111 10.91 6.12 0.00 4.41
1674 1784 4.249661 CTCTGCAGACCTTCTTAAGTTCC 58.750 47.826 13.74 0.00 0.00 3.62
1779 1895 1.276421 TGACAGCAGGCTTACCTCTTC 59.724 52.381 0.00 0.00 46.34 2.87
1895 2111 7.118723 TCTTTCCAGTAGCATGAACCATTAAT 58.881 34.615 0.00 0.00 0.00 1.40
1938 2154 6.041409 TCAATAAAGAAGAAACCATGCAACCA 59.959 34.615 0.00 0.00 0.00 3.67
1956 2172 3.443329 ACGTGGCAATGCTGATCAATAAA 59.557 39.130 4.82 0.00 0.00 1.40
1976 2197 6.968131 TTGATCTTTATTTCCAGAGTCACG 57.032 37.500 0.00 0.00 0.00 4.35
2073 2298 5.180492 TGTGTTAGCTAAAACTATGCACACC 59.820 40.000 24.02 2.26 35.43 4.16
2110 2335 7.721842 TGAATTTATGTTGTCCAGTTTCCACTA 59.278 33.333 0.00 0.00 0.00 2.74
2121 2346 8.816640 AATTTCACTGTGAATTTATGTTGTCC 57.183 30.769 22.60 0.00 36.11 4.02
2188 2429 2.380249 TGATGGGTATTGGTTGTGGGAA 59.620 45.455 0.00 0.00 0.00 3.97
2189 2430 1.996291 TGATGGGTATTGGTTGTGGGA 59.004 47.619 0.00 0.00 0.00 4.37
2190 2431 2.378038 CTGATGGGTATTGGTTGTGGG 58.622 52.381 0.00 0.00 0.00 4.61
2191 2432 1.750778 GCTGATGGGTATTGGTTGTGG 59.249 52.381 0.00 0.00 0.00 4.17
2192 2433 2.726821 AGCTGATGGGTATTGGTTGTG 58.273 47.619 0.00 0.00 0.00 3.33
2193 2434 3.091545 CAAGCTGATGGGTATTGGTTGT 58.908 45.455 0.00 0.00 33.27 3.32
2194 2435 2.428171 CCAAGCTGATGGGTATTGGTTG 59.572 50.000 0.00 0.00 36.48 3.77
2195 2436 2.738743 CCAAGCTGATGGGTATTGGTT 58.261 47.619 0.00 0.00 36.48 3.67
2277 2524 3.611766 AAGTTATCTGGCTTACGCACT 57.388 42.857 0.00 0.00 38.10 4.40
2295 2543 1.676006 ACTCAAACGCAAGGACCAAAG 59.324 47.619 0.00 0.00 46.39 2.77
2344 2592 1.214062 GACCAGCACCGTCAGAGAG 59.786 63.158 0.00 0.00 0.00 3.20
2345 2593 1.228583 AGACCAGCACCGTCAGAGA 60.229 57.895 0.00 0.00 32.41 3.10
2369 2617 4.122776 GAGCTTGAATATTTCAGCCGAGA 58.877 43.478 13.54 0.00 41.38 4.04
2373 2621 5.530171 TGAGATGAGCTTGAATATTTCAGCC 59.470 40.000 13.54 8.04 41.38 4.85
2391 2640 3.444916 GGTTGCAATCAAGCATGAGATG 58.555 45.455 4.39 0.63 46.74 2.90
2451 2702 7.503902 GGAGCAGGGAAGTATTTGATAATTTCT 59.496 37.037 0.00 0.00 0.00 2.52
2468 2719 7.633018 AACATCTTATATTTAGGAGCAGGGA 57.367 36.000 0.00 0.00 0.00 4.20
2519 2771 1.755161 AACGCGTCTAGATGCATACG 58.245 50.000 31.01 19.38 43.26 3.06
2543 2795 8.703336 CATGGTTAGAATGAGTGAATATACACG 58.297 37.037 0.00 0.00 44.35 4.49
2561 2813 8.617290 ACTAGGTTTTTCTACAACATGGTTAG 57.383 34.615 0.00 0.00 26.60 2.34
2621 2941 3.881089 CAGCATGATATTGAGCAAGTCCA 59.119 43.478 0.00 0.00 39.69 4.02
2645 2965 4.082787 ACTTTCGGCACACAAATAATCTGG 60.083 41.667 0.00 0.00 0.00 3.86
2646 2966 5.046910 ACTTTCGGCACACAAATAATCTG 57.953 39.130 0.00 0.00 0.00 2.90
2661 2981 3.554524 CACACATGTAGCAAACTTTCGG 58.445 45.455 0.00 0.00 0.00 4.30
2733 3053 3.641434 AACCACCTGATCCTCATCAAG 57.359 47.619 0.00 0.00 38.63 3.02
2734 3054 4.081406 CAAAACCACCTGATCCTCATCAA 58.919 43.478 0.00 0.00 38.63 2.57
2735 3055 3.689347 CAAAACCACCTGATCCTCATCA 58.311 45.455 0.00 0.00 36.62 3.07
2745 3065 1.069596 GGGCAAGCAAAACCACCTG 59.930 57.895 0.00 0.00 0.00 4.00
2748 3068 0.392336 TCATGGGCAAGCAAAACCAC 59.608 50.000 0.00 0.00 35.52 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.