Multiple sequence alignment - TraesCS6A01G104300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G104300 chr6A 100.000 3235 0 0 1 3235 73386324 73383090 0.000000e+00 5975.0
1 TraesCS6A01G104300 chr6A 87.234 94 11 1 477 570 50270019 50270111 4.410000e-19 106.0
2 TraesCS6A01G104300 chr6B 92.644 2012 105 24 1106 3081 130318084 130316080 0.000000e+00 2856.0
3 TraesCS6A01G104300 chr6B 93.095 420 19 5 679 1098 130318468 130318059 9.930000e-170 606.0
4 TraesCS6A01G104300 chr6B 81.818 154 22 6 327 476 663688829 663688678 1.220000e-24 124.0
5 TraesCS6A01G104300 chr6B 87.097 93 12 0 477 569 218975452 218975360 4.410000e-19 106.0
6 TraesCS6A01G104300 chr6B 90.000 80 1 1 3163 3235 130316082 130316003 2.660000e-16 97.1
7 TraesCS6A01G104300 chr6D 91.268 1901 94 27 481 2355 58061746 58059892 0.000000e+00 2525.0
8 TraesCS6A01G104300 chr6D 94.595 185 8 2 2757 2940 58049748 58049565 5.280000e-73 285.0
9 TraesCS6A01G104300 chr6D 81.074 391 37 12 2408 2770 58053429 58053048 8.840000e-71 278.0
10 TraesCS6A01G104300 chr6D 80.769 156 25 4 324 476 8153988 8154141 2.040000e-22 117.0
11 TraesCS6A01G104300 chr2A 77.795 653 130 14 1590 2236 465552651 465552008 3.910000e-104 388.0
12 TraesCS6A01G104300 chr2A 82.639 144 19 5 334 473 669425285 669425426 4.380000e-24 122.0
13 TraesCS6A01G104300 chr5A 88.664 247 26 1 1 245 705963699 705963453 1.890000e-77 300.0
14 TraesCS6A01G104300 chr5A 97.826 92 1 1 3074 3165 51547341 51547431 1.200000e-34 158.0
15 TraesCS6A01G104300 chr5B 88.664 247 25 3 1 245 536861038 536860793 6.790000e-77 298.0
16 TraesCS6A01G104300 chr5B 94.000 100 2 4 3078 3175 135750734 135750637 7.230000e-32 148.0
17 TraesCS6A01G104300 chr3D 88.936 235 24 2 1 234 531155355 531155122 4.080000e-74 289.0
18 TraesCS6A01G104300 chrUn 86.992 246 31 1 1 245 108242273 108242518 3.180000e-70 276.0
19 TraesCS6A01G104300 chrUn 82.051 156 23 4 327 478 63609172 63609018 9.420000e-26 128.0
20 TraesCS6A01G104300 chrUn 87.234 94 11 1 477 570 40187573 40187665 4.410000e-19 106.0
21 TraesCS6A01G104300 chr7D 86.235 247 32 2 1 245 45924332 45924086 1.910000e-67 267.0
22 TraesCS6A01G104300 chr7D 84.848 264 19 3 1 245 45430712 45430973 2.490000e-61 246.0
23 TraesCS6A01G104300 chr7D 92.308 104 6 2 3062 3165 195280120 195280221 2.600000e-31 147.0
24 TraesCS6A01G104300 chr7A 85.259 251 30 3 1 245 10421850 10421601 5.360000e-63 252.0
25 TraesCS6A01G104300 chr5D 85.200 250 30 6 1 245 540205661 540205414 1.930000e-62 250.0
26 TraesCS6A01G104300 chr4B 84.615 247 36 2 1 245 665979824 665979578 8.970000e-61 244.0
27 TraesCS6A01G104300 chr4B 93.069 101 3 3 3066 3165 634342539 634342636 9.350000e-31 145.0
28 TraesCS6A01G104300 chr2B 82.443 262 27 11 3 247 51184774 51184515 9.090000e-51 211.0
29 TraesCS6A01G104300 chr2B 83.750 160 22 3 327 483 708671811 708671653 7.230000e-32 148.0
30 TraesCS6A01G104300 chr2B 91.743 109 4 5 3056 3164 232350867 232350970 2.600000e-31 147.0
31 TraesCS6A01G104300 chr2B 82.550 149 22 3 327 472 641653482 641653335 9.420000e-26 128.0
32 TraesCS6A01G104300 chr2B 87.234 94 11 1 477 570 620862324 620862416 4.410000e-19 106.0
33 TraesCS6A01G104300 chr7B 85.714 154 18 3 327 476 41043346 41043499 3.340000e-35 159.0
34 TraesCS6A01G104300 chr7B 83.007 153 22 3 327 476 454795160 454795311 5.630000e-28 135.0
35 TraesCS6A01G104300 chr4A 98.876 89 0 1 3078 3166 340657741 340657654 1.200000e-34 158.0
36 TraesCS6A01G104300 chr4A 94.898 98 3 2 3076 3173 578562626 578562721 5.590000e-33 152.0
37 TraesCS6A01G104300 chr4D 95.789 95 2 2 3079 3173 436376717 436376809 5.590000e-33 152.0
38 TraesCS6A01G104300 chr3A 97.674 86 1 1 3079 3164 330699582 330699666 2.600000e-31 147.0
39 TraesCS6A01G104300 chr1A 81.529 157 25 3 327 480 39883748 39883903 3.390000e-25 126.0
40 TraesCS6A01G104300 chr1A 87.234 94 11 1 477 570 406174852 406174760 4.410000e-19 106.0
41 TraesCS6A01G104300 chr1A 87.234 94 11 1 477 570 583816458 583816550 4.410000e-19 106.0
42 TraesCS6A01G104300 chr1A 86.957 92 11 1 477 568 432019396 432019486 5.710000e-18 102.0
43 TraesCS6A01G104300 chr1A 91.525 59 5 0 2141 2199 513158536 513158478 7.440000e-12 82.4
44 TraesCS6A01G104300 chr3B 87.368 95 11 1 477 571 22126584 22126491 1.230000e-19 108.0
45 TraesCS6A01G104300 chr3B 90.909 44 3 1 2400 2443 43718746 43718704 1.250000e-04 58.4
46 TraesCS6A01G104300 chr1B 89.831 59 6 0 2141 2199 561753080 561753022 3.460000e-10 76.8
47 TraesCS6A01G104300 chr1D 88.136 59 7 0 2141 2199 415435091 415435033 1.610000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G104300 chr6A 73383090 73386324 3234 True 5975.000000 5975 100.0000 1 3235 1 chr6A.!!$R1 3234
1 TraesCS6A01G104300 chr6B 130316003 130318468 2465 True 1186.366667 2856 91.9130 679 3235 3 chr6B.!!$R3 2556
2 TraesCS6A01G104300 chr6D 58059892 58061746 1854 True 2525.000000 2525 91.2680 481 2355 1 chr6D.!!$R1 1874
3 TraesCS6A01G104300 chr6D 58049565 58053429 3864 True 281.500000 285 87.8345 2408 2940 2 chr6D.!!$R2 532
4 TraesCS6A01G104300 chr2A 465552008 465552651 643 True 388.000000 388 77.7950 1590 2236 1 chr2A.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 928 0.041312 GCCTATTTATGCACACCGCG 60.041 55.0 0.0 0.0 46.97 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 2276 0.53065 AGAGCGAGAGAGCGAGAGAG 60.531 60.0 0.0 0.0 43.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.665719 AAAAAGTTGGTGTTCTCATAAAATGTT 57.334 25.926 0.00 0.00 0.00 2.71
52 53 9.665719 AAAAGTTGGTGTTCTCATAAAATGTTT 57.334 25.926 0.00 0.00 0.00 2.83
53 54 8.647143 AAGTTGGTGTTCTCATAAAATGTTTG 57.353 30.769 0.00 0.00 0.00 2.93
54 55 7.781056 AGTTGGTGTTCTCATAAAATGTTTGT 58.219 30.769 0.00 0.00 0.00 2.83
55 56 7.706179 AGTTGGTGTTCTCATAAAATGTTTGTG 59.294 33.333 0.00 0.00 0.00 3.33
56 57 7.340122 TGGTGTTCTCATAAAATGTTTGTGA 57.660 32.000 1.09 1.09 0.00 3.58
57 58 7.776107 TGGTGTTCTCATAAAATGTTTGTGAA 58.224 30.769 2.48 0.00 0.00 3.18
58 59 8.420222 TGGTGTTCTCATAAAATGTTTGTGAAT 58.580 29.630 2.48 0.00 0.00 2.57
59 60 9.260002 GGTGTTCTCATAAAATGTTTGTGAATT 57.740 29.630 2.48 0.00 0.00 2.17
93 94 9.651913 ATGTTTCCTTTCATATTTTATTTGCGT 57.348 25.926 0.00 0.00 0.00 5.24
94 95 9.482627 TGTTTCCTTTCATATTTTATTTGCGTT 57.517 25.926 0.00 0.00 0.00 4.84
120 121 9.587772 TTTTTCGAAAGTGGACATAATTTTCAA 57.412 25.926 10.98 0.00 0.00 2.69
121 122 9.587772 TTTTCGAAAGTGGACATAATTTTCAAA 57.412 25.926 10.98 0.00 0.00 2.69
122 123 9.587772 TTTCGAAAGTGGACATAATTTTCAAAA 57.412 25.926 6.47 0.00 0.00 2.44
123 124 9.587772 TTCGAAAGTGGACATAATTTTCAAAAA 57.412 25.926 0.00 0.00 0.00 1.94
144 145 7.898014 AAAAACTGTTCAGGTTTCCTAGAAT 57.102 32.000 14.84 0.00 36.09 2.40
145 146 8.990163 AAAAACTGTTCAGGTTTCCTAGAATA 57.010 30.769 14.84 0.00 36.09 1.75
146 147 9.588096 AAAAACTGTTCAGGTTTCCTAGAATAT 57.412 29.630 14.84 0.00 36.09 1.28
147 148 9.588096 AAAACTGTTCAGGTTTCCTAGAATATT 57.412 29.630 9.66 0.00 36.09 1.28
148 149 8.794335 AACTGTTCAGGTTTCCTAGAATATTC 57.206 34.615 7.41 7.41 29.64 1.75
149 150 7.918076 ACTGTTCAGGTTTCCTAGAATATTCA 58.082 34.615 17.56 3.25 29.64 2.57
150 151 8.383175 ACTGTTCAGGTTTCCTAGAATATTCAA 58.617 33.333 17.56 0.25 29.64 2.69
151 152 9.231297 CTGTTCAGGTTTCCTAGAATATTCAAA 57.769 33.333 17.56 6.43 29.64 2.69
152 153 9.581289 TGTTCAGGTTTCCTAGAATATTCAAAA 57.419 29.630 17.56 9.09 29.64 2.44
176 177 8.894768 AAATTTCATACCTTAGAATCTCCTCG 57.105 34.615 0.00 0.00 0.00 4.63
177 178 7.841282 ATTTCATACCTTAGAATCTCCTCGA 57.159 36.000 0.00 0.00 0.00 4.04
178 179 7.841282 TTTCATACCTTAGAATCTCCTCGAT 57.159 36.000 0.00 0.00 0.00 3.59
179 180 7.841282 TTCATACCTTAGAATCTCCTCGATT 57.159 36.000 0.00 0.00 44.87 3.34
180 181 7.220741 TCATACCTTAGAATCTCCTCGATTG 57.779 40.000 0.00 0.00 42.31 2.67
181 182 7.004691 TCATACCTTAGAATCTCCTCGATTGA 58.995 38.462 0.00 0.00 42.31 2.57
182 183 7.505923 TCATACCTTAGAATCTCCTCGATTGAA 59.494 37.037 0.00 0.00 42.31 2.69
183 184 6.546428 ACCTTAGAATCTCCTCGATTGAAA 57.454 37.500 0.00 0.00 42.31 2.69
184 185 6.578023 ACCTTAGAATCTCCTCGATTGAAAG 58.422 40.000 0.00 0.00 42.31 2.62
185 186 5.988561 CCTTAGAATCTCCTCGATTGAAAGG 59.011 44.000 0.00 8.83 42.31 3.11
186 187 6.183360 CCTTAGAATCTCCTCGATTGAAAGGA 60.183 42.308 13.92 0.00 44.29 3.36
187 188 5.885449 AGAATCTCCTCGATTGAAAGGAT 57.115 39.130 0.00 0.00 42.31 3.24
188 189 6.245890 AGAATCTCCTCGATTGAAAGGATT 57.754 37.500 0.00 0.00 42.31 3.01
189 190 6.054295 AGAATCTCCTCGATTGAAAGGATTG 58.946 40.000 8.00 0.00 42.31 2.67
190 191 5.620738 ATCTCCTCGATTGAAAGGATTGA 57.379 39.130 0.00 0.00 40.83 2.57
191 192 5.420725 TCTCCTCGATTGAAAGGATTGAA 57.579 39.130 0.00 0.00 40.83 2.69
192 193 5.804639 TCTCCTCGATTGAAAGGATTGAAA 58.195 37.500 0.00 0.00 40.83 2.69
193 194 5.877012 TCTCCTCGATTGAAAGGATTGAAAG 59.123 40.000 0.00 0.00 40.83 2.62
194 195 4.943705 TCCTCGATTGAAAGGATTGAAAGG 59.056 41.667 0.00 0.00 36.75 3.11
195 196 4.943705 CCTCGATTGAAAGGATTGAAAGGA 59.056 41.667 0.00 0.00 34.35 3.36
196 197 5.415701 CCTCGATTGAAAGGATTGAAAGGAA 59.584 40.000 0.00 0.00 34.35 3.36
197 198 6.404074 CCTCGATTGAAAGGATTGAAAGGAAG 60.404 42.308 0.00 0.00 34.35 3.46
198 199 6.237901 TCGATTGAAAGGATTGAAAGGAAGA 58.762 36.000 0.00 0.00 0.00 2.87
199 200 6.372659 TCGATTGAAAGGATTGAAAGGAAGAG 59.627 38.462 0.00 0.00 0.00 2.85
200 201 6.150140 CGATTGAAAGGATTGAAAGGAAGAGT 59.850 38.462 0.00 0.00 0.00 3.24
201 202 7.334421 CGATTGAAAGGATTGAAAGGAAGAGTA 59.666 37.037 0.00 0.00 0.00 2.59
202 203 7.986085 TTGAAAGGATTGAAAGGAAGAGTAG 57.014 36.000 0.00 0.00 0.00 2.57
203 204 7.316393 TGAAAGGATTGAAAGGAAGAGTAGA 57.684 36.000 0.00 0.00 0.00 2.59
204 205 7.922382 TGAAAGGATTGAAAGGAAGAGTAGAT 58.078 34.615 0.00 0.00 0.00 1.98
205 206 8.386264 TGAAAGGATTGAAAGGAAGAGTAGATT 58.614 33.333 0.00 0.00 0.00 2.40
206 207 8.572855 AAAGGATTGAAAGGAAGAGTAGATTG 57.427 34.615 0.00 0.00 0.00 2.67
207 208 7.502060 AGGATTGAAAGGAAGAGTAGATTGA 57.498 36.000 0.00 0.00 0.00 2.57
208 209 7.922382 AGGATTGAAAGGAAGAGTAGATTGAA 58.078 34.615 0.00 0.00 0.00 2.69
209 210 8.555729 AGGATTGAAAGGAAGAGTAGATTGAAT 58.444 33.333 0.00 0.00 0.00 2.57
210 211 9.838339 GGATTGAAAGGAAGAGTAGATTGAATA 57.162 33.333 0.00 0.00 0.00 1.75
218 219 9.790344 AGGAAGAGTAGATTGAATAATTCATGG 57.210 33.333 0.00 0.00 39.84 3.66
219 220 9.007901 GGAAGAGTAGATTGAATAATTCATGGG 57.992 37.037 0.00 0.00 39.84 4.00
220 221 7.992754 AGAGTAGATTGAATAATTCATGGGC 57.007 36.000 0.00 0.00 39.84 5.36
221 222 6.944862 AGAGTAGATTGAATAATTCATGGGCC 59.055 38.462 0.00 0.00 39.84 5.80
222 223 6.856757 AGTAGATTGAATAATTCATGGGCCT 58.143 36.000 4.53 0.00 39.84 5.19
223 224 7.300658 AGTAGATTGAATAATTCATGGGCCTT 58.699 34.615 4.53 0.00 39.84 4.35
224 225 6.661304 AGATTGAATAATTCATGGGCCTTC 57.339 37.500 4.53 0.00 39.84 3.46
225 226 6.379579 AGATTGAATAATTCATGGGCCTTCT 58.620 36.000 4.53 0.00 39.84 2.85
226 227 6.492772 AGATTGAATAATTCATGGGCCTTCTC 59.507 38.462 4.53 0.00 39.84 2.87
227 228 5.393068 TGAATAATTCATGGGCCTTCTCT 57.607 39.130 4.53 0.00 34.08 3.10
228 229 5.135383 TGAATAATTCATGGGCCTTCTCTG 58.865 41.667 4.53 0.00 34.08 3.35
229 230 2.449137 AATTCATGGGCCTTCTCTGG 57.551 50.000 4.53 0.00 0.00 3.86
237 238 3.997672 GCCTTCTCTGGCGTATGAT 57.002 52.632 0.00 0.00 43.74 2.45
239 240 3.386768 GCCTTCTCTGGCGTATGATAA 57.613 47.619 0.00 0.00 43.74 1.75
240 241 3.060602 GCCTTCTCTGGCGTATGATAAC 58.939 50.000 0.00 0.00 43.74 1.89
241 242 3.309388 CCTTCTCTGGCGTATGATAACG 58.691 50.000 0.00 0.00 45.58 3.18
242 243 3.243434 CCTTCTCTGGCGTATGATAACGT 60.243 47.826 0.00 0.00 44.64 3.99
243 244 4.023450 CCTTCTCTGGCGTATGATAACGTA 60.023 45.833 0.00 0.00 44.64 3.57
244 245 5.503662 TTCTCTGGCGTATGATAACGTAA 57.496 39.130 0.00 0.00 44.64 3.18
245 246 5.503662 TCTCTGGCGTATGATAACGTAAA 57.496 39.130 0.00 0.00 44.64 2.01
246 247 5.893687 TCTCTGGCGTATGATAACGTAAAA 58.106 37.500 0.00 0.00 44.64 1.52
247 248 5.745294 TCTCTGGCGTATGATAACGTAAAAC 59.255 40.000 0.00 0.00 44.64 2.43
248 249 5.409211 TCTGGCGTATGATAACGTAAAACA 58.591 37.500 0.00 0.00 44.64 2.83
249 250 5.868258 TCTGGCGTATGATAACGTAAAACAA 59.132 36.000 0.00 0.00 44.64 2.83
250 251 6.535865 TCTGGCGTATGATAACGTAAAACAAT 59.464 34.615 0.00 0.00 44.64 2.71
251 252 6.479436 TGGCGTATGATAACGTAAAACAATG 58.521 36.000 0.00 0.00 44.64 2.82
252 253 5.394322 GGCGTATGATAACGTAAAACAATGC 59.606 40.000 0.00 0.00 44.64 3.56
253 254 6.189567 GCGTATGATAACGTAAAACAATGCT 58.810 36.000 0.00 0.00 44.64 3.79
254 255 6.138546 GCGTATGATAACGTAAAACAATGCTG 59.861 38.462 0.00 0.00 44.64 4.41
255 256 7.395645 CGTATGATAACGTAAAACAATGCTGA 58.604 34.615 0.00 0.00 38.07 4.26
256 257 8.061857 CGTATGATAACGTAAAACAATGCTGAT 58.938 33.333 0.00 0.00 38.07 2.90
260 261 9.715123 TGATAACGTAAAACAATGCTGATAATG 57.285 29.630 0.00 0.00 0.00 1.90
261 262 6.869421 AACGTAAAACAATGCTGATAATGC 57.131 33.333 0.00 0.00 0.00 3.56
262 263 5.948588 ACGTAAAACAATGCTGATAATGCA 58.051 33.333 0.00 0.00 44.95 3.96
271 272 5.531122 ATGCTGATAATGCATCTTTGCTT 57.469 34.783 0.00 0.00 46.80 3.91
272 273 6.644248 ATGCTGATAATGCATCTTTGCTTA 57.356 33.333 0.00 0.00 46.80 3.09
273 274 6.678878 ATGCTGATAATGCATCTTTGCTTAG 58.321 36.000 0.00 0.00 46.80 2.18
274 275 6.294564 ATGCTGATAATGCATCTTTGCTTAGG 60.295 38.462 0.00 0.00 46.80 2.69
275 276 9.137100 ATGCTGATAATGCATCTTTGCTTAGGG 62.137 40.741 0.00 0.00 46.80 3.53
285 286 3.276281 TGCTTAGGGTAGCACTCGA 57.724 52.632 0.00 0.00 45.72 4.04
286 287 0.815734 TGCTTAGGGTAGCACTCGAC 59.184 55.000 0.00 0.00 45.72 4.20
287 288 0.248539 GCTTAGGGTAGCACTCGACG 60.249 60.000 0.00 0.00 40.89 5.12
288 289 1.093159 CTTAGGGTAGCACTCGACGT 58.907 55.000 0.00 0.00 0.00 4.34
289 290 1.471684 CTTAGGGTAGCACTCGACGTT 59.528 52.381 0.00 0.00 0.00 3.99
290 291 1.538047 TAGGGTAGCACTCGACGTTT 58.462 50.000 0.00 0.00 0.00 3.60
291 292 0.677842 AGGGTAGCACTCGACGTTTT 59.322 50.000 0.00 0.00 0.00 2.43
292 293 1.066136 GGGTAGCACTCGACGTTTTC 58.934 55.000 0.00 0.00 0.00 2.29
293 294 1.336609 GGGTAGCACTCGACGTTTTCT 60.337 52.381 0.00 0.00 0.00 2.52
294 295 1.719780 GGTAGCACTCGACGTTTTCTG 59.280 52.381 0.00 0.00 0.00 3.02
295 296 2.606308 GGTAGCACTCGACGTTTTCTGA 60.606 50.000 0.00 0.00 0.00 3.27
296 297 1.488527 AGCACTCGACGTTTTCTGAC 58.511 50.000 0.00 0.00 0.00 3.51
297 298 1.202371 AGCACTCGACGTTTTCTGACA 60.202 47.619 0.00 0.00 0.00 3.58
298 299 1.071436 GCACTCGACGTTTTCTGACAC 60.071 52.381 0.00 0.00 0.00 3.67
299 300 2.460918 CACTCGACGTTTTCTGACACT 58.539 47.619 0.00 0.00 0.00 3.55
300 301 2.468040 CACTCGACGTTTTCTGACACTC 59.532 50.000 0.00 0.00 0.00 3.51
301 302 1.709203 CTCGACGTTTTCTGACACTCG 59.291 52.381 0.00 0.00 0.00 4.18
302 303 1.331447 TCGACGTTTTCTGACACTCGA 59.669 47.619 0.00 0.00 0.00 4.04
303 304 1.447201 CGACGTTTTCTGACACTCGAC 59.553 52.381 0.00 0.00 0.00 4.20
304 305 1.447201 GACGTTTTCTGACACTCGACG 59.553 52.381 0.00 0.00 35.39 5.12
305 306 0.158928 CGTTTTCTGACACTCGACGC 59.841 55.000 0.00 0.00 0.00 5.19
306 307 1.205657 GTTTTCTGACACTCGACGCA 58.794 50.000 0.00 0.00 0.00 5.24
307 308 1.190323 GTTTTCTGACACTCGACGCAG 59.810 52.381 0.00 0.00 0.00 5.18
308 309 0.318699 TTTCTGACACTCGACGCAGG 60.319 55.000 0.00 0.00 0.00 4.85
309 310 2.126307 CTGACACTCGACGCAGGG 60.126 66.667 0.00 0.00 0.00 4.45
310 311 2.910479 TGACACTCGACGCAGGGT 60.910 61.111 2.47 2.47 30.33 4.34
311 312 2.430921 GACACTCGACGCAGGGTG 60.431 66.667 8.92 8.92 26.55 4.61
312 313 3.208884 GACACTCGACGCAGGGTGT 62.209 63.158 15.07 15.07 44.18 4.16
313 314 1.859427 GACACTCGACGCAGGGTGTA 61.859 60.000 15.11 0.00 42.01 2.90
314 315 1.287815 CACTCGACGCAGGGTGTAA 59.712 57.895 0.00 0.00 0.00 2.41
315 316 0.108804 CACTCGACGCAGGGTGTAAT 60.109 55.000 0.00 0.00 0.00 1.89
316 317 0.606604 ACTCGACGCAGGGTGTAATT 59.393 50.000 0.00 0.00 0.00 1.40
317 318 1.278238 CTCGACGCAGGGTGTAATTC 58.722 55.000 0.00 0.00 0.00 2.17
318 319 0.892755 TCGACGCAGGGTGTAATTCT 59.107 50.000 0.00 0.00 0.00 2.40
319 320 2.093890 TCGACGCAGGGTGTAATTCTA 58.906 47.619 0.00 0.00 0.00 2.10
320 321 2.098607 TCGACGCAGGGTGTAATTCTAG 59.901 50.000 0.00 0.00 0.00 2.43
321 322 2.159282 CGACGCAGGGTGTAATTCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
322 323 3.065786 CGACGCAGGGTGTAATTCTAGTA 59.934 47.826 0.00 0.00 0.00 1.82
323 324 4.608951 GACGCAGGGTGTAATTCTAGTAG 58.391 47.826 0.00 0.00 0.00 2.57
324 325 4.021916 ACGCAGGGTGTAATTCTAGTAGT 58.978 43.478 0.00 0.00 0.00 2.73
325 326 4.142227 ACGCAGGGTGTAATTCTAGTAGTG 60.142 45.833 0.00 0.00 0.00 2.74
326 327 4.142227 CGCAGGGTGTAATTCTAGTAGTGT 60.142 45.833 0.00 0.00 0.00 3.55
327 328 5.623824 CGCAGGGTGTAATTCTAGTAGTGTT 60.624 44.000 0.00 0.00 0.00 3.32
328 329 6.405065 CGCAGGGTGTAATTCTAGTAGTGTTA 60.405 42.308 0.00 0.00 0.00 2.41
329 330 7.325694 GCAGGGTGTAATTCTAGTAGTGTTAA 58.674 38.462 0.00 0.00 0.00 2.01
330 331 7.277319 GCAGGGTGTAATTCTAGTAGTGTTAAC 59.723 40.741 0.00 0.00 0.00 2.01
331 332 8.308931 CAGGGTGTAATTCTAGTAGTGTTAACA 58.691 37.037 3.59 3.59 0.00 2.41
332 333 8.309656 AGGGTGTAATTCTAGTAGTGTTAACAC 58.690 37.037 27.72 27.72 46.77 3.32
346 347 6.795098 GTGTTAACACAATATGTCTCACCA 57.205 37.500 29.46 0.00 42.31 4.17
347 348 6.599437 GTGTTAACACAATATGTCTCACCAC 58.401 40.000 29.46 0.00 42.31 4.16
348 349 6.426937 GTGTTAACACAATATGTCTCACCACT 59.573 38.462 29.46 0.00 42.31 4.00
349 350 6.995686 TGTTAACACAATATGTCTCACCACTT 59.004 34.615 3.59 0.00 42.31 3.16
350 351 7.500892 TGTTAACACAATATGTCTCACCACTTT 59.499 33.333 3.59 0.00 42.31 2.66
351 352 6.959639 AACACAATATGTCTCACCACTTTT 57.040 33.333 0.00 0.00 42.31 2.27
352 353 6.959639 ACACAATATGTCTCACCACTTTTT 57.040 33.333 0.00 0.00 36.54 1.94
353 354 8.458573 AACACAATATGTCTCACCACTTTTTA 57.541 30.769 0.00 0.00 42.31 1.52
354 355 8.458573 ACACAATATGTCTCACCACTTTTTAA 57.541 30.769 0.00 0.00 36.54 1.52
355 356 8.567948 ACACAATATGTCTCACCACTTTTTAAG 58.432 33.333 0.00 0.00 36.54 1.85
356 357 8.783093 CACAATATGTCTCACCACTTTTTAAGA 58.217 33.333 0.00 0.00 0.00 2.10
357 358 9.349713 ACAATATGTCTCACCACTTTTTAAGAA 57.650 29.630 0.00 0.00 0.00 2.52
361 362 7.435068 TGTCTCACCACTTTTTAAGAATAGC 57.565 36.000 0.00 0.00 0.00 2.97
362 363 7.224297 TGTCTCACCACTTTTTAAGAATAGCT 58.776 34.615 0.00 0.00 0.00 3.32
363 364 8.372459 TGTCTCACCACTTTTTAAGAATAGCTA 58.628 33.333 0.00 0.00 0.00 3.32
364 365 8.874816 GTCTCACCACTTTTTAAGAATAGCTAG 58.125 37.037 0.00 0.00 0.00 3.42
365 366 8.594550 TCTCACCACTTTTTAAGAATAGCTAGT 58.405 33.333 0.00 0.00 0.00 2.57
366 367 9.220767 CTCACCACTTTTTAAGAATAGCTAGTT 57.779 33.333 0.00 0.00 0.00 2.24
435 436 8.681486 TTCTCATATCCAAATCACATACAAGG 57.319 34.615 0.00 0.00 0.00 3.61
436 437 6.712095 TCTCATATCCAAATCACATACAAGGC 59.288 38.462 0.00 0.00 0.00 4.35
437 438 6.604171 TCATATCCAAATCACATACAAGGCT 58.396 36.000 0.00 0.00 0.00 4.58
438 439 7.062322 TCATATCCAAATCACATACAAGGCTT 58.938 34.615 0.00 0.00 0.00 4.35
439 440 8.217111 TCATATCCAAATCACATACAAGGCTTA 58.783 33.333 0.00 0.00 0.00 3.09
440 441 8.849168 CATATCCAAATCACATACAAGGCTTAA 58.151 33.333 0.00 0.00 0.00 1.85
441 442 6.509418 TCCAAATCACATACAAGGCTTAAC 57.491 37.500 0.00 0.00 0.00 2.01
442 443 6.007076 TCCAAATCACATACAAGGCTTAACA 58.993 36.000 0.00 0.00 0.00 2.41
443 444 6.663093 TCCAAATCACATACAAGGCTTAACAT 59.337 34.615 0.00 0.00 0.00 2.71
444 445 7.831690 TCCAAATCACATACAAGGCTTAACATA 59.168 33.333 0.00 0.00 0.00 2.29
445 446 8.131100 CCAAATCACATACAAGGCTTAACATAG 58.869 37.037 0.00 0.00 0.00 2.23
446 447 8.892723 CAAATCACATACAAGGCTTAACATAGA 58.107 33.333 0.00 0.00 0.00 1.98
447 448 9.461312 AAATCACATACAAGGCTTAACATAGAA 57.539 29.630 0.00 0.00 0.00 2.10
448 449 7.843490 TCACATACAAGGCTTAACATAGAAC 57.157 36.000 0.00 0.00 0.00 3.01
449 450 7.620880 TCACATACAAGGCTTAACATAGAACT 58.379 34.615 0.00 0.00 0.00 3.01
450 451 7.549134 TCACATACAAGGCTTAACATAGAACTG 59.451 37.037 0.00 0.00 0.00 3.16
451 452 7.334421 CACATACAAGGCTTAACATAGAACTGT 59.666 37.037 0.00 0.00 0.00 3.55
452 453 7.549488 ACATACAAGGCTTAACATAGAACTGTC 59.451 37.037 0.00 0.00 0.00 3.51
453 454 6.115448 ACAAGGCTTAACATAGAACTGTCT 57.885 37.500 0.00 0.00 37.95 3.41
454 455 6.534634 ACAAGGCTTAACATAGAACTGTCTT 58.465 36.000 0.00 0.00 35.12 3.01
455 456 7.676947 ACAAGGCTTAACATAGAACTGTCTTA 58.323 34.615 0.00 0.00 35.12 2.10
456 457 8.322091 ACAAGGCTTAACATAGAACTGTCTTAT 58.678 33.333 0.00 0.00 35.12 1.73
457 458 8.821894 CAAGGCTTAACATAGAACTGTCTTATC 58.178 37.037 0.00 0.00 35.12 1.75
458 459 8.079211 AGGCTTAACATAGAACTGTCTTATCA 57.921 34.615 0.00 0.00 35.12 2.15
459 460 8.540388 AGGCTTAACATAGAACTGTCTTATCAA 58.460 33.333 0.00 0.00 35.12 2.57
460 461 8.604890 GGCTTAACATAGAACTGTCTTATCAAC 58.395 37.037 0.00 0.00 35.12 3.18
461 462 8.604890 GCTTAACATAGAACTGTCTTATCAACC 58.395 37.037 0.00 0.00 35.12 3.77
462 463 9.653287 CTTAACATAGAACTGTCTTATCAACCA 57.347 33.333 0.00 0.00 35.12 3.67
463 464 7.907214 AACATAGAACTGTCTTATCAACCAC 57.093 36.000 0.00 0.00 35.12 4.16
464 465 7.246171 ACATAGAACTGTCTTATCAACCACT 57.754 36.000 0.00 0.00 35.12 4.00
465 466 7.099764 ACATAGAACTGTCTTATCAACCACTG 58.900 38.462 0.00 0.00 35.12 3.66
466 467 4.319177 AGAACTGTCTTATCAACCACTGC 58.681 43.478 0.00 0.00 0.00 4.40
467 468 3.769739 ACTGTCTTATCAACCACTGCA 57.230 42.857 0.00 0.00 0.00 4.41
468 469 3.403038 ACTGTCTTATCAACCACTGCAC 58.597 45.455 0.00 0.00 0.00 4.57
469 470 2.744202 CTGTCTTATCAACCACTGCACC 59.256 50.000 0.00 0.00 0.00 5.01
470 471 2.371841 TGTCTTATCAACCACTGCACCT 59.628 45.455 0.00 0.00 0.00 4.00
471 472 2.744202 GTCTTATCAACCACTGCACCTG 59.256 50.000 0.00 0.00 0.00 4.00
472 473 1.470098 CTTATCAACCACTGCACCTGC 59.530 52.381 0.00 0.00 42.50 4.85
473 474 0.322456 TATCAACCACTGCACCTGCC 60.322 55.000 0.00 0.00 41.18 4.85
474 475 3.297620 CAACCACTGCACCTGCCC 61.298 66.667 0.00 0.00 41.18 5.36
475 476 3.501911 AACCACTGCACCTGCCCT 61.502 61.111 0.00 0.00 41.18 5.19
476 477 3.073599 AACCACTGCACCTGCCCTT 62.074 57.895 0.00 0.00 41.18 3.95
477 478 1.715019 AACCACTGCACCTGCCCTTA 61.715 55.000 0.00 0.00 41.18 2.69
478 479 1.304282 CCACTGCACCTGCCCTTAT 59.696 57.895 0.00 0.00 41.18 1.73
479 480 0.546122 CCACTGCACCTGCCCTTATA 59.454 55.000 0.00 0.00 41.18 0.98
483 484 2.308866 ACTGCACCTGCCCTTATAACTT 59.691 45.455 0.00 0.00 41.18 2.66
487 488 4.887071 TGCACCTGCCCTTATAACTTATTG 59.113 41.667 0.00 0.00 41.18 1.90
490 491 6.204882 GCACCTGCCCTTATAACTTATTGTAG 59.795 42.308 0.00 0.00 34.31 2.74
517 518 9.167311 ACATACTTTTACTCTCATGTCCAAATC 57.833 33.333 0.00 0.00 0.00 2.17
527 528 4.443913 CATGTCCAAATCACATGCAAGA 57.556 40.909 0.00 0.00 43.48 3.02
528 529 3.921119 TGTCCAAATCACATGCAAGAC 57.079 42.857 0.00 0.00 0.00 3.01
538 539 9.499585 CAAATCACATGCAAGACTTAAGATAAG 57.500 33.333 10.09 0.00 0.00 1.73
540 541 7.834068 TCACATGCAAGACTTAAGATAAGAC 57.166 36.000 10.09 0.00 0.00 3.01
545 546 6.398918 TGCAAGACTTAAGATAAGACTGTCC 58.601 40.000 10.09 0.00 0.00 4.02
551 552 9.875708 AGACTTAAGATAAGACTGTCCTATCAT 57.124 33.333 22.10 15.58 0.00 2.45
556 557 6.619464 AGATAAGACTGTCCTATCATCCACT 58.381 40.000 22.10 4.27 0.00 4.00
579 580 6.710744 ACTATACATGCCCTTATACACTTTGC 59.289 38.462 0.00 0.00 0.00 3.68
598 599 2.213280 CCCAATGCATGAATGGGCA 58.787 52.632 19.64 0.00 46.77 5.36
618 619 3.074412 CAGATTTGTACAGAAACCGCCT 58.926 45.455 0.00 0.00 0.00 5.52
622 623 3.756933 TTGTACAGAAACCGCCTTACT 57.243 42.857 0.00 0.00 0.00 2.24
673 674 8.429641 CCTACAACCTGCTTCCTTTAATATAGA 58.570 37.037 0.00 0.00 0.00 1.98
674 675 9.482627 CTACAACCTGCTTCCTTTAATATAGAG 57.517 37.037 0.00 0.00 0.00 2.43
677 678 6.292150 ACCTGCTTCCTTTAATATAGAGTGC 58.708 40.000 0.00 0.00 0.00 4.40
695 696 1.397390 GCCATTCCATCTTGCCCTGG 61.397 60.000 0.00 0.00 0.00 4.45
711 712 3.081409 GGCCCGGGCTAGACTTGA 61.081 66.667 42.70 0.00 41.60 3.02
744 745 3.430098 CCTTCATCCAGAGACGAAGAAGG 60.430 52.174 7.27 7.27 43.02 3.46
869 871 0.667184 CATGCAACTGCCGTTTTCCC 60.667 55.000 0.00 0.00 41.18 3.97
901 903 0.463654 ACTTGGTGAAACGAGCAGCA 60.464 50.000 0.00 0.00 41.46 4.41
926 928 0.041312 GCCTATTTATGCACACCGCG 60.041 55.000 0.00 0.00 46.97 6.46
945 947 1.375396 TCACAAATCTCGGGCGGTG 60.375 57.895 0.00 0.00 0.00 4.94
946 948 1.671054 CACAAATCTCGGGCGGTGT 60.671 57.895 0.00 0.00 0.00 4.16
947 949 0.390603 CACAAATCTCGGGCGGTGTA 60.391 55.000 0.00 0.00 0.00 2.90
948 950 0.390735 ACAAATCTCGGGCGGTGTAC 60.391 55.000 0.00 0.00 0.00 2.90
976 978 2.266055 GGTGGTTCCGGCTCAGAG 59.734 66.667 0.00 0.00 0.00 3.35
982 984 2.055042 TTCCGGCTCAGAGCTCTCC 61.055 63.158 21.99 11.70 41.99 3.71
985 987 2.489275 CGGCTCAGAGCTCTCCCTC 61.489 68.421 21.99 3.26 41.99 4.30
986 988 1.076044 GGCTCAGAGCTCTCCCTCT 60.076 63.158 21.99 0.00 42.75 3.69
987 989 1.109323 GGCTCAGAGCTCTCCCTCTC 61.109 65.000 21.99 0.00 40.11 3.20
988 990 0.106519 GCTCAGAGCTCTCCCTCTCT 60.107 60.000 14.96 0.00 40.11 3.10
989 991 1.972872 CTCAGAGCTCTCCCTCTCTC 58.027 60.000 14.96 0.00 40.11 3.20
990 992 1.492176 CTCAGAGCTCTCCCTCTCTCT 59.508 57.143 14.96 0.00 40.11 3.10
991 993 1.683943 CAGAGCTCTCCCTCTCTCTG 58.316 60.000 14.96 4.05 44.18 3.35
992 994 1.064463 CAGAGCTCTCCCTCTCTCTGT 60.064 57.143 14.96 0.00 44.43 3.41
1110 1112 2.683933 CCACCCGCTACACCTCCT 60.684 66.667 0.00 0.00 0.00 3.69
1117 1119 3.528370 CTACACCTCCTCCGGCGG 61.528 72.222 22.51 22.51 0.00 6.13
1370 1372 4.969484 GGTAAGTACCATCCATTACCCTG 58.031 47.826 2.47 0.00 45.73 4.45
1384 1392 1.923356 ACCCTGTACTTTTGCCATGG 58.077 50.000 7.63 7.63 0.00 3.66
1535 1560 2.896443 GAGGAGCTCAAGACGGGG 59.104 66.667 17.19 0.00 0.00 5.73
1769 1794 2.202987 GAGAGCATGGTGAGCCGG 60.203 66.667 0.00 0.00 37.67 6.13
2258 2283 4.732923 CGATAGCAAGTTTCTTCTCTCTCG 59.267 45.833 0.00 0.00 0.00 4.04
2266 2291 1.934589 TCTTCTCTCTCGCTCTCTCG 58.065 55.000 0.00 0.00 0.00 4.04
2277 2302 1.221414 GCTCTCTCGCTCTCTCTCTC 58.779 60.000 0.00 0.00 0.00 3.20
2279 2304 2.748605 CTCTCTCGCTCTCTCTCTCTC 58.251 57.143 0.00 0.00 0.00 3.20
2280 2305 2.363680 CTCTCTCGCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
2281 2306 2.766263 TCTCTCGCTCTCTCTCTCTCTT 59.234 50.000 0.00 0.00 0.00 2.85
2307 2332 9.551734 TTACAGTAGTATAATTCACTAGCGAGA 57.448 33.333 0.00 0.00 0.00 4.04
2344 2378 0.743688 CGTCATAGGAGTGCTCTGCT 59.256 55.000 14.41 14.41 44.32 4.24
2472 2512 1.133025 ACTCACTATGCCAAAATGCGC 59.867 47.619 0.00 0.00 0.00 6.09
2498 2553 9.726034 CGAAAAAGATACATTTTTAATGCACAC 57.274 29.630 0.00 0.00 41.28 3.82
2528 2585 9.533253 ACAATTCATGAAAAAGACACCTTTAAG 57.467 29.630 13.09 0.00 41.46 1.85
2539 2596 4.885907 AGACACCTTTAAGATGCATCATGG 59.114 41.667 27.81 21.06 0.00 3.66
2549 2606 5.757099 AGATGCATCATGGATGATACTCA 57.243 39.130 27.81 2.35 45.23 3.41
2680 2746 5.659440 AAATAATTGCAACTGATTCCCGT 57.341 34.783 0.00 0.00 0.00 5.28
2681 2747 6.767524 AAATAATTGCAACTGATTCCCGTA 57.232 33.333 0.00 0.00 0.00 4.02
2684 2750 0.613260 TGCAACTGATTCCCGTAGCT 59.387 50.000 0.00 0.00 0.00 3.32
2688 2754 3.857052 CAACTGATTCCCGTAGCTACAA 58.143 45.455 23.21 10.79 0.00 2.41
2690 2756 3.097614 ACTGATTCCCGTAGCTACAAGT 58.902 45.455 23.21 11.00 0.00 3.16
2712 2778 6.625267 AGTGGGGTATCATCTCTAGTTGTAT 58.375 40.000 0.00 0.00 0.00 2.29
2751 2817 7.357303 GCTTCTATTTTCGTTGTTAAGTTCCA 58.643 34.615 0.00 0.00 0.00 3.53
2752 2818 7.534239 GCTTCTATTTTCGTTGTTAAGTTCCAG 59.466 37.037 0.00 0.00 0.00 3.86
2775 6154 5.059833 GCAAAAATTGTATGGGGTGACAAA 58.940 37.500 0.00 0.00 38.94 2.83
2785 6164 2.091830 TGGGGTGACAAACATGTACCAA 60.092 45.455 15.04 2.11 33.10 3.67
2935 6316 7.554118 ACACACATGGATTTTCTATAAGGTCAG 59.446 37.037 0.00 0.00 0.00 3.51
2954 6335 9.710900 AAGGTCAGAATTTATGTCAAAATTTCC 57.289 29.630 0.00 7.56 38.77 3.13
3030 6411 0.545071 ACTCCAAAGGCAAATGGGGG 60.545 55.000 7.82 0.00 41.77 5.40
3042 6423 1.833187 AATGGGGGCCTAGAGCATAA 58.167 50.000 0.84 0.00 46.50 1.90
3084 6465 8.794335 ACTTGTTGAGAAGATTAAATACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
3085 6466 8.606830 ACTTGTTGAGAAGATTAAATACTCCCT 58.393 33.333 0.00 0.00 0.00 4.20
3086 6467 9.103861 CTTGTTGAGAAGATTAAATACTCCCTC 57.896 37.037 0.00 0.00 0.00 4.30
3087 6468 8.380742 TGTTGAGAAGATTAAATACTCCCTCT 57.619 34.615 0.00 0.00 0.00 3.69
3088 6469 8.260818 TGTTGAGAAGATTAAATACTCCCTCTG 58.739 37.037 0.00 0.00 0.00 3.35
3089 6470 7.979786 TGAGAAGATTAAATACTCCCTCTGT 57.020 36.000 0.00 0.00 0.00 3.41
3090 6471 9.488762 TTGAGAAGATTAAATACTCCCTCTGTA 57.511 33.333 0.00 0.00 0.00 2.74
3091 6472 9.488762 TGAGAAGATTAAATACTCCCTCTGTAA 57.511 33.333 0.00 0.00 0.00 2.41
3105 6486 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3106 6487 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3107 6488 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3108 6489 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3109 6490 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3127 6508 9.570488 AGAGCGTTTAGATTACTAAAGTTAGTG 57.430 33.333 12.92 0.00 45.42 2.74
3128 6509 9.565213 GAGCGTTTAGATTACTAAAGTTAGTGA 57.435 33.333 12.92 6.13 45.42 3.41
3159 6540 9.813446 AACACTCTTATATTAGTTTACGAAGGG 57.187 33.333 0.00 0.00 0.00 3.95
3160 6541 9.193806 ACACTCTTATATTAGTTTACGAAGGGA 57.806 33.333 0.00 0.00 0.00 4.20
3161 6542 9.680315 CACTCTTATATTAGTTTACGAAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
3162 6543 9.418839 ACTCTTATATTAGTTTACGAAGGGAGT 57.581 33.333 0.00 0.00 0.00 3.85
3177 6558 7.432059 ACGAAGGGAGTACAATAATAAGTAGC 58.568 38.462 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.665719 AACATTTTATGAGAACACCAACTTTTT 57.334 25.926 0.00 0.00 0.00 1.94
26 27 9.665719 AAACATTTTATGAGAACACCAACTTTT 57.334 25.926 0.00 0.00 0.00 2.27
27 28 9.097257 CAAACATTTTATGAGAACACCAACTTT 57.903 29.630 0.00 0.00 0.00 2.66
28 29 8.257306 ACAAACATTTTATGAGAACACCAACTT 58.743 29.630 0.00 0.00 0.00 2.66
29 30 7.706179 CACAAACATTTTATGAGAACACCAACT 59.294 33.333 0.00 0.00 0.00 3.16
30 31 7.704472 TCACAAACATTTTATGAGAACACCAAC 59.296 33.333 0.00 0.00 0.00 3.77
31 32 7.776107 TCACAAACATTTTATGAGAACACCAA 58.224 30.769 0.00 0.00 0.00 3.67
32 33 7.340122 TCACAAACATTTTATGAGAACACCA 57.660 32.000 0.00 0.00 0.00 4.17
33 34 8.816640 ATTCACAAACATTTTATGAGAACACC 57.183 30.769 0.00 0.00 0.00 4.16
67 68 9.651913 ACGCAAATAAAATATGAAAGGAAACAT 57.348 25.926 0.00 0.00 0.00 2.71
68 69 9.482627 AACGCAAATAAAATATGAAAGGAAACA 57.517 25.926 0.00 0.00 0.00 2.83
94 95 9.587772 TTGAAAATTATGTCCACTTTCGAAAAA 57.412 25.926 12.41 0.97 0.00 1.94
95 96 9.587772 TTTGAAAATTATGTCCACTTTCGAAAA 57.412 25.926 12.41 0.00 30.23 2.29
96 97 9.587772 TTTTGAAAATTATGTCCACTTTCGAAA 57.412 25.926 10.71 10.71 37.18 3.46
97 98 9.587772 TTTTTGAAAATTATGTCCACTTTCGAA 57.412 25.926 0.00 0.00 30.92 3.71
120 121 7.898014 ATTCTAGGAAACCTGAACAGTTTTT 57.102 32.000 0.00 0.00 34.61 1.94
121 122 9.588096 AATATTCTAGGAAACCTGAACAGTTTT 57.412 29.630 0.00 0.00 34.61 2.43
122 123 9.232473 GAATATTCTAGGAAACCTGAACAGTTT 57.768 33.333 8.27 0.00 34.61 2.66
123 124 8.383175 TGAATATTCTAGGAAACCTGAACAGTT 58.617 33.333 16.24 0.00 34.61 3.16
124 125 7.918076 TGAATATTCTAGGAAACCTGAACAGT 58.082 34.615 16.24 0.00 34.61 3.55
125 126 8.792830 TTGAATATTCTAGGAAACCTGAACAG 57.207 34.615 16.24 0.00 34.61 3.16
126 127 9.581289 TTTTGAATATTCTAGGAAACCTGAACA 57.419 29.630 16.24 0.00 34.61 3.18
150 151 9.331282 CGAGGAGATTCTAAGGTATGAAATTTT 57.669 33.333 0.00 0.00 0.00 1.82
151 152 8.705594 TCGAGGAGATTCTAAGGTATGAAATTT 58.294 33.333 0.00 0.00 0.00 1.82
152 153 8.251383 TCGAGGAGATTCTAAGGTATGAAATT 57.749 34.615 0.00 0.00 0.00 1.82
153 154 7.841282 TCGAGGAGATTCTAAGGTATGAAAT 57.159 36.000 0.00 0.00 0.00 2.17
154 155 7.841282 ATCGAGGAGATTCTAAGGTATGAAA 57.159 36.000 0.00 0.00 35.73 2.69
155 156 7.505923 TCAATCGAGGAGATTCTAAGGTATGAA 59.494 37.037 0.00 0.00 45.95 2.57
156 157 7.004691 TCAATCGAGGAGATTCTAAGGTATGA 58.995 38.462 0.00 0.00 45.95 2.15
157 158 7.220741 TCAATCGAGGAGATTCTAAGGTATG 57.779 40.000 0.00 0.00 45.95 2.39
158 159 7.841282 TTCAATCGAGGAGATTCTAAGGTAT 57.159 36.000 0.00 0.00 45.95 2.73
159 160 7.201920 CCTTTCAATCGAGGAGATTCTAAGGTA 60.202 40.741 15.37 0.00 45.95 3.08
160 161 6.407525 CCTTTCAATCGAGGAGATTCTAAGGT 60.408 42.308 15.37 0.00 45.95 3.50
161 162 5.988561 CCTTTCAATCGAGGAGATTCTAAGG 59.011 44.000 12.25 12.25 45.95 2.69
162 163 6.810911 TCCTTTCAATCGAGGAGATTCTAAG 58.189 40.000 0.00 0.00 45.95 2.18
163 164 6.791867 TCCTTTCAATCGAGGAGATTCTAA 57.208 37.500 0.00 0.00 45.95 2.10
164 165 6.985653 ATCCTTTCAATCGAGGAGATTCTA 57.014 37.500 0.00 0.00 45.95 2.10
165 166 5.885449 ATCCTTTCAATCGAGGAGATTCT 57.115 39.130 0.00 0.00 45.95 2.40
166 167 6.051717 TCAATCCTTTCAATCGAGGAGATTC 58.948 40.000 0.00 0.00 45.95 2.52
168 169 5.620738 TCAATCCTTTCAATCGAGGAGAT 57.379 39.130 0.00 0.00 44.77 2.75
169 170 5.420725 TTCAATCCTTTCAATCGAGGAGA 57.579 39.130 0.00 0.00 44.77 3.71
170 171 5.065731 CCTTTCAATCCTTTCAATCGAGGAG 59.934 44.000 0.00 0.00 44.77 3.69
171 172 4.943705 CCTTTCAATCCTTTCAATCGAGGA 59.056 41.667 0.00 0.00 45.57 3.71
172 173 4.943705 TCCTTTCAATCCTTTCAATCGAGG 59.056 41.667 0.00 0.00 0.00 4.63
173 174 6.372659 TCTTCCTTTCAATCCTTTCAATCGAG 59.627 38.462 0.00 0.00 0.00 4.04
174 175 6.237901 TCTTCCTTTCAATCCTTTCAATCGA 58.762 36.000 0.00 0.00 0.00 3.59
175 176 6.150140 ACTCTTCCTTTCAATCCTTTCAATCG 59.850 38.462 0.00 0.00 0.00 3.34
176 177 7.459795 ACTCTTCCTTTCAATCCTTTCAATC 57.540 36.000 0.00 0.00 0.00 2.67
177 178 8.386264 TCTACTCTTCCTTTCAATCCTTTCAAT 58.614 33.333 0.00 0.00 0.00 2.57
178 179 7.745717 TCTACTCTTCCTTTCAATCCTTTCAA 58.254 34.615 0.00 0.00 0.00 2.69
179 180 7.316393 TCTACTCTTCCTTTCAATCCTTTCA 57.684 36.000 0.00 0.00 0.00 2.69
180 181 8.672815 CAATCTACTCTTCCTTTCAATCCTTTC 58.327 37.037 0.00 0.00 0.00 2.62
181 182 8.386264 TCAATCTACTCTTCCTTTCAATCCTTT 58.614 33.333 0.00 0.00 0.00 3.11
182 183 7.922382 TCAATCTACTCTTCCTTTCAATCCTT 58.078 34.615 0.00 0.00 0.00 3.36
183 184 7.502060 TCAATCTACTCTTCCTTTCAATCCT 57.498 36.000 0.00 0.00 0.00 3.24
184 185 8.744568 ATTCAATCTACTCTTCCTTTCAATCC 57.255 34.615 0.00 0.00 0.00 3.01
192 193 9.790344 CCATGAATTATTCAATCTACTCTTCCT 57.210 33.333 11.88 0.00 43.95 3.36
193 194 9.007901 CCCATGAATTATTCAATCTACTCTTCC 57.992 37.037 11.88 0.00 43.95 3.46
194 195 8.510505 GCCCATGAATTATTCAATCTACTCTTC 58.489 37.037 11.88 0.00 43.95 2.87
195 196 7.449704 GGCCCATGAATTATTCAATCTACTCTT 59.550 37.037 11.88 0.00 43.95 2.85
196 197 6.944862 GGCCCATGAATTATTCAATCTACTCT 59.055 38.462 11.88 0.00 43.95 3.24
197 198 6.944862 AGGCCCATGAATTATTCAATCTACTC 59.055 38.462 11.88 0.08 43.95 2.59
198 199 6.856757 AGGCCCATGAATTATTCAATCTACT 58.143 36.000 11.88 5.55 43.95 2.57
199 200 7.449704 AGAAGGCCCATGAATTATTCAATCTAC 59.550 37.037 11.88 3.46 43.95 2.59
200 201 7.529555 AGAAGGCCCATGAATTATTCAATCTA 58.470 34.615 11.88 0.00 43.95 1.98
201 202 6.379579 AGAAGGCCCATGAATTATTCAATCT 58.620 36.000 11.88 4.90 43.95 2.40
202 203 6.492772 AGAGAAGGCCCATGAATTATTCAATC 59.507 38.462 11.88 1.94 43.95 2.67
203 204 6.267014 CAGAGAAGGCCCATGAATTATTCAAT 59.733 38.462 11.88 0.00 43.95 2.57
204 205 5.595542 CAGAGAAGGCCCATGAATTATTCAA 59.404 40.000 11.88 0.00 43.95 2.69
205 206 5.135383 CAGAGAAGGCCCATGAATTATTCA 58.865 41.667 10.23 10.23 45.01 2.57
206 207 4.522022 CCAGAGAAGGCCCATGAATTATTC 59.478 45.833 0.00 0.00 0.00 1.75
207 208 4.477249 CCAGAGAAGGCCCATGAATTATT 58.523 43.478 0.00 0.00 0.00 1.40
208 209 4.109877 CCAGAGAAGGCCCATGAATTAT 57.890 45.455 0.00 0.00 0.00 1.28
209 210 3.582998 CCAGAGAAGGCCCATGAATTA 57.417 47.619 0.00 0.00 0.00 1.40
210 211 2.449137 CCAGAGAAGGCCCATGAATT 57.551 50.000 0.00 0.00 0.00 2.17
220 221 3.243434 ACGTTATCATACGCCAGAGAAGG 60.243 47.826 0.00 0.00 45.06 3.46
221 222 3.966154 ACGTTATCATACGCCAGAGAAG 58.034 45.455 0.00 0.00 45.06 2.85
222 223 5.503662 TTACGTTATCATACGCCAGAGAA 57.496 39.130 0.00 0.00 45.06 2.87
223 224 5.503662 TTTACGTTATCATACGCCAGAGA 57.496 39.130 0.00 0.00 45.06 3.10
224 225 5.517411 TGTTTTACGTTATCATACGCCAGAG 59.483 40.000 0.00 0.00 45.06 3.35
225 226 5.409211 TGTTTTACGTTATCATACGCCAGA 58.591 37.500 0.00 0.00 45.06 3.86
226 227 5.705813 TGTTTTACGTTATCATACGCCAG 57.294 39.130 0.00 0.00 45.06 4.85
227 228 6.479436 CATTGTTTTACGTTATCATACGCCA 58.521 36.000 0.00 0.00 45.06 5.69
228 229 5.394322 GCATTGTTTTACGTTATCATACGCC 59.606 40.000 0.00 0.00 45.06 5.68
229 230 6.138546 CAGCATTGTTTTACGTTATCATACGC 59.861 38.462 0.00 0.00 45.06 4.42
230 231 7.395645 TCAGCATTGTTTTACGTTATCATACG 58.604 34.615 0.00 0.00 46.52 3.06
234 235 9.715123 CATTATCAGCATTGTTTTACGTTATCA 57.285 29.630 0.00 0.00 0.00 2.15
235 236 8.682016 GCATTATCAGCATTGTTTTACGTTATC 58.318 33.333 0.00 0.00 0.00 1.75
236 237 8.187480 TGCATTATCAGCATTGTTTTACGTTAT 58.813 29.630 0.00 0.00 37.02 1.89
237 238 7.530863 TGCATTATCAGCATTGTTTTACGTTA 58.469 30.769 0.00 0.00 37.02 3.18
238 239 6.385843 TGCATTATCAGCATTGTTTTACGTT 58.614 32.000 0.00 0.00 37.02 3.99
239 240 5.948588 TGCATTATCAGCATTGTTTTACGT 58.051 33.333 0.00 0.00 37.02 3.57
268 269 0.248539 CGTCGAGTGCTACCCTAAGC 60.249 60.000 0.00 0.00 43.08 3.09
269 270 1.093159 ACGTCGAGTGCTACCCTAAG 58.907 55.000 0.00 0.00 0.00 2.18
270 271 1.538047 AACGTCGAGTGCTACCCTAA 58.462 50.000 0.00 0.00 0.00 2.69
271 272 1.538047 AAACGTCGAGTGCTACCCTA 58.462 50.000 0.00 0.00 0.00 3.53
272 273 0.677842 AAAACGTCGAGTGCTACCCT 59.322 50.000 0.00 0.00 0.00 4.34
273 274 1.066136 GAAAACGTCGAGTGCTACCC 58.934 55.000 0.00 0.00 0.00 3.69
274 275 1.719780 CAGAAAACGTCGAGTGCTACC 59.280 52.381 0.00 0.00 0.00 3.18
275 276 2.404361 GTCAGAAAACGTCGAGTGCTAC 59.596 50.000 0.00 0.00 0.00 3.58
276 277 2.033675 TGTCAGAAAACGTCGAGTGCTA 59.966 45.455 0.00 0.00 0.00 3.49
277 278 1.202371 TGTCAGAAAACGTCGAGTGCT 60.202 47.619 0.00 0.00 0.00 4.40
278 279 1.071436 GTGTCAGAAAACGTCGAGTGC 60.071 52.381 0.00 0.00 0.00 4.40
279 280 2.460918 AGTGTCAGAAAACGTCGAGTG 58.539 47.619 0.00 0.00 0.00 3.51
280 281 2.728922 GAGTGTCAGAAAACGTCGAGT 58.271 47.619 0.00 0.00 0.00 4.18
281 282 1.709203 CGAGTGTCAGAAAACGTCGAG 59.291 52.381 0.00 0.00 32.74 4.04
282 283 1.331447 TCGAGTGTCAGAAAACGTCGA 59.669 47.619 0.00 0.00 35.87 4.20
283 284 1.447201 GTCGAGTGTCAGAAAACGTCG 59.553 52.381 0.00 0.00 32.45 5.12
284 285 1.447201 CGTCGAGTGTCAGAAAACGTC 59.553 52.381 0.00 0.00 0.00 4.34
285 286 1.474017 CGTCGAGTGTCAGAAAACGT 58.526 50.000 0.00 0.00 0.00 3.99
286 287 0.158928 GCGTCGAGTGTCAGAAAACG 59.841 55.000 0.00 0.00 0.00 3.60
287 288 1.190323 CTGCGTCGAGTGTCAGAAAAC 59.810 52.381 0.00 0.00 0.00 2.43
288 289 1.487482 CTGCGTCGAGTGTCAGAAAA 58.513 50.000 0.00 0.00 0.00 2.29
289 290 0.318699 CCTGCGTCGAGTGTCAGAAA 60.319 55.000 0.00 0.00 0.00 2.52
290 291 1.285950 CCTGCGTCGAGTGTCAGAA 59.714 57.895 0.00 0.00 0.00 3.02
291 292 2.626780 CCCTGCGTCGAGTGTCAGA 61.627 63.158 0.00 0.00 0.00 3.27
292 293 2.126307 CCCTGCGTCGAGTGTCAG 60.126 66.667 0.00 0.00 0.00 3.51
293 294 2.910479 ACCCTGCGTCGAGTGTCA 60.910 61.111 0.00 0.00 0.00 3.58
294 295 1.859427 TACACCCTGCGTCGAGTGTC 61.859 60.000 8.90 0.00 42.25 3.67
295 296 1.457823 TTACACCCTGCGTCGAGTGT 61.458 55.000 10.26 10.26 45.06 3.55
296 297 0.108804 ATTACACCCTGCGTCGAGTG 60.109 55.000 0.00 0.00 36.30 3.51
297 298 0.606604 AATTACACCCTGCGTCGAGT 59.393 50.000 0.00 0.00 0.00 4.18
298 299 1.135083 AGAATTACACCCTGCGTCGAG 60.135 52.381 0.00 0.00 0.00 4.04
299 300 0.892755 AGAATTACACCCTGCGTCGA 59.107 50.000 0.00 0.00 0.00 4.20
300 301 2.159282 ACTAGAATTACACCCTGCGTCG 60.159 50.000 0.00 0.00 0.00 5.12
301 302 3.521947 ACTAGAATTACACCCTGCGTC 57.478 47.619 0.00 0.00 0.00 5.19
302 303 4.021916 ACTACTAGAATTACACCCTGCGT 58.978 43.478 0.00 0.00 0.00 5.24
303 304 4.142227 ACACTACTAGAATTACACCCTGCG 60.142 45.833 0.00 0.00 0.00 5.18
304 305 5.340439 ACACTACTAGAATTACACCCTGC 57.660 43.478 0.00 0.00 0.00 4.85
305 306 8.308931 TGTTAACACTACTAGAATTACACCCTG 58.691 37.037 3.59 0.00 0.00 4.45
306 307 8.309656 GTGTTAACACTACTAGAATTACACCCT 58.690 37.037 27.69 0.00 43.25 4.34
307 308 8.090214 TGTGTTAACACTACTAGAATTACACCC 58.910 37.037 32.58 6.73 46.55 4.61
308 309 9.480053 TTGTGTTAACACTACTAGAATTACACC 57.520 33.333 32.58 7.05 46.55 4.16
318 319 9.850628 GTGAGACATATTGTGTTAACACTACTA 57.149 33.333 32.58 22.34 46.55 1.82
319 320 7.817962 GGTGAGACATATTGTGTTAACACTACT 59.182 37.037 32.58 20.44 46.55 2.57
320 321 7.601130 TGGTGAGACATATTGTGTTAACACTAC 59.399 37.037 32.58 16.79 46.55 2.73
321 322 7.601130 GTGGTGAGACATATTGTGTTAACACTA 59.399 37.037 32.58 27.51 42.12 2.74
322 323 6.426937 GTGGTGAGACATATTGTGTTAACACT 59.573 38.462 32.58 19.80 42.12 3.55
323 324 6.426937 AGTGGTGAGACATATTGTGTTAACAC 59.573 38.462 28.13 28.13 44.50 3.32
324 325 6.530120 AGTGGTGAGACATATTGTGTTAACA 58.470 36.000 3.59 3.59 42.36 2.41
325 326 7.435068 AAGTGGTGAGACATATTGTGTTAAC 57.565 36.000 0.00 0.00 42.36 2.01
326 327 8.458573 AAAAGTGGTGAGACATATTGTGTTAA 57.541 30.769 0.00 0.00 42.36 2.01
327 328 8.458573 AAAAAGTGGTGAGACATATTGTGTTA 57.541 30.769 0.00 0.00 42.36 2.41
328 329 6.959639 AAAAGTGGTGAGACATATTGTGTT 57.040 33.333 0.00 0.00 42.36 3.32
329 330 6.959639 AAAAAGTGGTGAGACATATTGTGT 57.040 33.333 0.00 0.00 45.83 3.72
330 331 8.783093 TCTTAAAAAGTGGTGAGACATATTGTG 58.217 33.333 0.00 0.00 0.00 3.33
331 332 8.918202 TCTTAAAAAGTGGTGAGACATATTGT 57.082 30.769 0.00 0.00 0.00 2.71
335 336 9.162764 GCTATTCTTAAAAAGTGGTGAGACATA 57.837 33.333 0.00 0.00 0.00 2.29
336 337 7.885399 AGCTATTCTTAAAAAGTGGTGAGACAT 59.115 33.333 0.00 0.00 0.00 3.06
337 338 7.224297 AGCTATTCTTAAAAAGTGGTGAGACA 58.776 34.615 0.00 0.00 0.00 3.41
338 339 7.674471 AGCTATTCTTAAAAAGTGGTGAGAC 57.326 36.000 0.00 0.00 0.00 3.36
339 340 8.594550 ACTAGCTATTCTTAAAAAGTGGTGAGA 58.405 33.333 0.00 0.00 0.00 3.27
340 341 8.779354 ACTAGCTATTCTTAAAAAGTGGTGAG 57.221 34.615 0.00 0.00 0.00 3.51
409 410 9.293404 CCTTGTATGTGATTTGGATATGAGAAT 57.707 33.333 0.00 0.00 0.00 2.40
410 411 7.229306 GCCTTGTATGTGATTTGGATATGAGAA 59.771 37.037 0.00 0.00 0.00 2.87
411 412 6.712095 GCCTTGTATGTGATTTGGATATGAGA 59.288 38.462 0.00 0.00 0.00 3.27
412 413 6.713903 AGCCTTGTATGTGATTTGGATATGAG 59.286 38.462 0.00 0.00 0.00 2.90
413 414 6.604171 AGCCTTGTATGTGATTTGGATATGA 58.396 36.000 0.00 0.00 0.00 2.15
414 415 6.889301 AGCCTTGTATGTGATTTGGATATG 57.111 37.500 0.00 0.00 0.00 1.78
415 416 8.850156 GTTAAGCCTTGTATGTGATTTGGATAT 58.150 33.333 0.00 0.00 0.00 1.63
416 417 7.831690 TGTTAAGCCTTGTATGTGATTTGGATA 59.168 33.333 0.00 0.00 0.00 2.59
417 418 6.663093 TGTTAAGCCTTGTATGTGATTTGGAT 59.337 34.615 0.00 0.00 0.00 3.41
418 419 6.007076 TGTTAAGCCTTGTATGTGATTTGGA 58.993 36.000 0.00 0.00 0.00 3.53
419 420 6.266168 TGTTAAGCCTTGTATGTGATTTGG 57.734 37.500 0.00 0.00 0.00 3.28
420 421 8.892723 TCTATGTTAAGCCTTGTATGTGATTTG 58.107 33.333 0.00 0.00 0.00 2.32
421 422 9.461312 TTCTATGTTAAGCCTTGTATGTGATTT 57.539 29.630 0.00 0.00 0.00 2.17
422 423 8.893727 GTTCTATGTTAAGCCTTGTATGTGATT 58.106 33.333 0.00 0.00 0.00 2.57
423 424 8.267894 AGTTCTATGTTAAGCCTTGTATGTGAT 58.732 33.333 0.00 0.00 0.00 3.06
424 425 7.549134 CAGTTCTATGTTAAGCCTTGTATGTGA 59.451 37.037 0.00 0.00 0.00 3.58
425 426 7.334421 ACAGTTCTATGTTAAGCCTTGTATGTG 59.666 37.037 0.00 0.00 0.00 3.21
426 427 7.394816 ACAGTTCTATGTTAAGCCTTGTATGT 58.605 34.615 0.00 0.00 0.00 2.29
427 428 7.766278 AGACAGTTCTATGTTAAGCCTTGTATG 59.234 37.037 0.00 0.00 32.25 2.39
428 429 7.852263 AGACAGTTCTATGTTAAGCCTTGTAT 58.148 34.615 0.00 0.00 32.25 2.29
429 430 7.241042 AGACAGTTCTATGTTAAGCCTTGTA 57.759 36.000 0.00 0.00 32.25 2.41
430 431 6.115448 AGACAGTTCTATGTTAAGCCTTGT 57.885 37.500 0.00 0.00 32.25 3.16
431 432 8.723942 ATAAGACAGTTCTATGTTAAGCCTTG 57.276 34.615 0.00 0.00 32.25 3.61
432 433 8.540388 TGATAAGACAGTTCTATGTTAAGCCTT 58.460 33.333 0.00 0.00 32.25 4.35
433 434 8.079211 TGATAAGACAGTTCTATGTTAAGCCT 57.921 34.615 0.00 0.00 32.25 4.58
434 435 8.604890 GTTGATAAGACAGTTCTATGTTAAGCC 58.395 37.037 0.00 0.00 32.25 4.35
435 436 8.604890 GGTTGATAAGACAGTTCTATGTTAAGC 58.395 37.037 0.00 0.00 32.25 3.09
436 437 9.653287 TGGTTGATAAGACAGTTCTATGTTAAG 57.347 33.333 0.00 0.00 32.25 1.85
437 438 9.431887 GTGGTTGATAAGACAGTTCTATGTTAA 57.568 33.333 0.00 0.00 32.25 2.01
438 439 8.812972 AGTGGTTGATAAGACAGTTCTATGTTA 58.187 33.333 0.00 0.00 32.25 2.41
439 440 7.604164 CAGTGGTTGATAAGACAGTTCTATGTT 59.396 37.037 0.00 0.00 32.25 2.71
440 441 7.099764 CAGTGGTTGATAAGACAGTTCTATGT 58.900 38.462 0.00 0.00 35.68 2.29
441 442 6.036517 GCAGTGGTTGATAAGACAGTTCTATG 59.963 42.308 0.00 0.00 0.00 2.23
442 443 6.109359 GCAGTGGTTGATAAGACAGTTCTAT 58.891 40.000 0.00 0.00 0.00 1.98
443 444 5.011635 TGCAGTGGTTGATAAGACAGTTCTA 59.988 40.000 0.00 0.00 0.00 2.10
444 445 4.202357 TGCAGTGGTTGATAAGACAGTTCT 60.202 41.667 0.00 0.00 0.00 3.01
445 446 4.065088 TGCAGTGGTTGATAAGACAGTTC 58.935 43.478 0.00 0.00 0.00 3.01
446 447 3.815401 GTGCAGTGGTTGATAAGACAGTT 59.185 43.478 0.00 0.00 0.00 3.16
447 448 3.403038 GTGCAGTGGTTGATAAGACAGT 58.597 45.455 0.00 0.00 0.00 3.55
448 449 2.744202 GGTGCAGTGGTTGATAAGACAG 59.256 50.000 0.00 0.00 0.00 3.51
449 450 2.371841 AGGTGCAGTGGTTGATAAGACA 59.628 45.455 0.00 0.00 0.00 3.41
450 451 2.744202 CAGGTGCAGTGGTTGATAAGAC 59.256 50.000 0.00 0.00 0.00 3.01
451 452 2.875672 GCAGGTGCAGTGGTTGATAAGA 60.876 50.000 0.00 0.00 41.59 2.10
452 453 1.470098 GCAGGTGCAGTGGTTGATAAG 59.530 52.381 0.00 0.00 41.59 1.73
453 454 1.533625 GCAGGTGCAGTGGTTGATAA 58.466 50.000 0.00 0.00 41.59 1.75
454 455 0.322456 GGCAGGTGCAGTGGTTGATA 60.322 55.000 4.01 0.00 44.36 2.15
455 456 1.604593 GGCAGGTGCAGTGGTTGAT 60.605 57.895 4.01 0.00 44.36 2.57
456 457 2.203337 GGCAGGTGCAGTGGTTGA 60.203 61.111 4.01 0.00 44.36 3.18
457 458 3.297620 GGGCAGGTGCAGTGGTTG 61.298 66.667 4.01 0.00 44.36 3.77
458 459 1.715019 TAAGGGCAGGTGCAGTGGTT 61.715 55.000 4.01 0.00 44.36 3.67
459 460 1.500783 ATAAGGGCAGGTGCAGTGGT 61.501 55.000 4.01 0.00 44.36 4.16
460 461 0.546122 TATAAGGGCAGGTGCAGTGG 59.454 55.000 4.01 0.00 44.36 4.00
461 462 2.017049 GTTATAAGGGCAGGTGCAGTG 58.983 52.381 4.01 0.00 44.36 3.66
462 463 1.916181 AGTTATAAGGGCAGGTGCAGT 59.084 47.619 4.01 0.00 44.36 4.40
463 464 2.717639 AGTTATAAGGGCAGGTGCAG 57.282 50.000 4.01 0.00 44.36 4.41
464 465 4.788925 ATAAGTTATAAGGGCAGGTGCA 57.211 40.909 4.01 0.00 44.36 4.57
465 466 4.887655 ACAATAAGTTATAAGGGCAGGTGC 59.112 41.667 0.00 0.00 41.14 5.01
466 467 7.441458 GTCTACAATAAGTTATAAGGGCAGGTG 59.559 40.741 0.00 0.00 0.00 4.00
467 468 7.126726 TGTCTACAATAAGTTATAAGGGCAGGT 59.873 37.037 0.00 0.00 0.00 4.00
468 469 7.506114 TGTCTACAATAAGTTATAAGGGCAGG 58.494 38.462 0.00 0.00 0.00 4.85
470 471 9.991906 GTATGTCTACAATAAGTTATAAGGGCA 57.008 33.333 0.00 0.00 0.00 5.36
487 488 8.467598 TGGACATGAGAGTAAAAGTATGTCTAC 58.532 37.037 0.00 1.49 42.29 2.59
490 491 8.547967 TTTGGACATGAGAGTAAAAGTATGTC 57.452 34.615 0.00 0.00 42.06 3.06
507 508 4.084287 AGTCTTGCATGTGATTTGGACAT 58.916 39.130 0.00 0.00 34.24 3.06
509 510 4.510038 AAGTCTTGCATGTGATTTGGAC 57.490 40.909 0.00 0.00 0.00 4.02
517 518 7.332926 ACAGTCTTATCTTAAGTCTTGCATGTG 59.667 37.037 1.63 0.00 0.00 3.21
523 524 9.959749 GATAGGACAGTCTTATCTTAAGTCTTG 57.040 37.037 20.49 0.00 33.99 3.02
527 528 9.084533 GGATGATAGGACAGTCTTATCTTAAGT 57.915 37.037 25.37 11.82 36.68 2.24
528 529 9.083422 TGGATGATAGGACAGTCTTATCTTAAG 57.917 37.037 25.37 0.00 36.68 1.85
538 539 7.542890 CATGTATAGTGGATGATAGGACAGTC 58.457 42.308 0.00 0.00 0.00 3.51
540 541 6.336566 GCATGTATAGTGGATGATAGGACAG 58.663 44.000 0.00 0.00 0.00 3.51
545 546 5.946942 AGGGCATGTATAGTGGATGATAG 57.053 43.478 0.00 0.00 0.00 2.08
551 552 6.082031 AGTGTATAAGGGCATGTATAGTGGA 58.918 40.000 0.00 0.00 0.00 4.02
556 557 6.001460 GGCAAAGTGTATAAGGGCATGTATA 58.999 40.000 0.00 0.00 0.00 1.47
597 598 3.074412 AGGCGGTTTCTGTACAAATCTG 58.926 45.455 0.00 1.11 0.00 2.90
598 599 3.418684 AGGCGGTTTCTGTACAAATCT 57.581 42.857 0.00 0.00 0.00 2.40
622 623 8.988934 GGAATTCTGTTATGAACGATGCTATAA 58.011 33.333 5.23 0.00 0.00 0.98
673 674 0.685458 GGGCAAGATGGAATGGCACT 60.685 55.000 0.00 0.00 43.34 4.40
674 675 0.685458 AGGGCAAGATGGAATGGCAC 60.685 55.000 0.00 0.00 43.34 5.01
677 678 1.397390 GCCAGGGCAAGATGGAATGG 61.397 60.000 5.20 0.00 39.02 3.16
695 696 2.501610 CTCAAGTCTAGCCCGGGC 59.498 66.667 39.29 39.29 42.33 6.13
701 702 4.637977 AGGCTAAATTTGCTCAAGTCTAGC 59.362 41.667 0.00 2.92 40.50 3.42
711 712 4.603131 TCTGGATGAAGGCTAAATTTGCT 58.397 39.130 0.00 0.00 0.00 3.91
869 871 4.238761 TCACCAAGTGACTTCGTCTAAG 57.761 45.455 0.00 0.00 37.67 2.18
901 903 1.227823 TGCATAAATAGGCCGCGCT 60.228 52.632 5.56 0.00 30.87 5.92
926 928 1.375523 ACCGCCCGAGATTTGTGAC 60.376 57.895 0.00 0.00 0.00 3.67
945 947 1.154225 CCACCGTGGACGTACGTAC 60.154 63.158 23.91 23.91 40.96 3.67
946 948 1.169661 AACCACCGTGGACGTACGTA 61.170 55.000 24.80 3.32 40.96 3.57
947 949 2.406452 GAACCACCGTGGACGTACGT 62.406 60.000 23.04 23.04 40.96 3.57
948 950 1.730547 GAACCACCGTGGACGTACG 60.731 63.158 24.80 15.01 40.96 3.67
974 976 1.064758 TGACAGAGAGAGGGAGAGCTC 60.065 57.143 5.27 5.27 0.00 4.09
976 978 1.102978 GTGACAGAGAGAGGGAGAGC 58.897 60.000 0.00 0.00 0.00 4.09
982 984 2.166050 CCATGTGAGTGACAGAGAGAGG 59.834 54.545 0.00 0.00 38.23 3.69
985 987 1.735038 CGCCATGTGAGTGACAGAGAG 60.735 57.143 0.00 0.00 38.23 3.20
986 988 0.244721 CGCCATGTGAGTGACAGAGA 59.755 55.000 0.00 0.00 38.23 3.10
987 989 0.738762 CCGCCATGTGAGTGACAGAG 60.739 60.000 0.00 0.00 38.23 3.35
988 990 1.293179 CCGCCATGTGAGTGACAGA 59.707 57.895 0.00 0.00 38.23 3.41
989 991 1.004560 ACCGCCATGTGAGTGACAG 60.005 57.895 0.00 0.00 38.23 3.51
990 992 1.005037 GACCGCCATGTGAGTGACA 60.005 57.895 0.00 0.00 39.53 3.58
991 993 2.094659 CGACCGCCATGTGAGTGAC 61.095 63.158 0.00 0.00 0.00 3.67
992 994 2.261361 CGACCGCCATGTGAGTGA 59.739 61.111 0.00 0.00 0.00 3.41
1182 1184 1.521681 GAGGATCGCGGGGAACTTG 60.522 63.158 6.13 0.00 0.00 3.16
1260 1262 1.221021 GTAGGGCGGGAAGTTGGAG 59.779 63.158 0.00 0.00 0.00 3.86
1261 1263 2.652095 CGTAGGGCGGGAAGTTGGA 61.652 63.158 0.00 0.00 36.85 3.53
1352 1354 4.892198 AGTACAGGGTAATGGATGGTACT 58.108 43.478 0.00 0.00 36.18 2.73
1358 1360 4.264172 TGGCAAAAGTACAGGGTAATGGAT 60.264 41.667 0.00 0.00 0.00 3.41
1359 1361 3.074687 TGGCAAAAGTACAGGGTAATGGA 59.925 43.478 0.00 0.00 0.00 3.41
1364 1366 2.645297 TCCATGGCAAAAGTACAGGGTA 59.355 45.455 6.96 0.00 37.35 3.69
1366 1368 2.214376 TCCATGGCAAAAGTACAGGG 57.786 50.000 6.96 0.00 37.40 4.45
1367 1369 4.021192 ACATTTCCATGGCAAAAGTACAGG 60.021 41.667 6.96 0.00 34.27 4.00
1368 1370 5.138125 ACATTTCCATGGCAAAAGTACAG 57.862 39.130 6.96 0.00 34.27 2.74
1369 1371 6.849085 ATACATTTCCATGGCAAAAGTACA 57.151 33.333 18.46 7.73 34.27 2.90
1370 1372 8.546597 AAAATACATTTCCATGGCAAAAGTAC 57.453 30.769 18.46 0.00 34.27 2.73
1405 1423 4.033709 TGATCCTTGGTTGTTTGGGAAAA 58.966 39.130 0.00 0.00 0.00 2.29
1417 1435 5.885449 TCCAAAACAAATTGATCCTTGGT 57.115 34.783 0.00 0.00 34.69 3.67
1661 1686 0.109272 TGAAGTAGAGCGCCTTGTCG 60.109 55.000 2.29 0.00 0.00 4.35
2046 2071 1.931551 CGTCGTGGGTGTTGTTCAG 59.068 57.895 0.00 0.00 0.00 3.02
2244 2269 3.485216 CGAGAGAGCGAGAGAGAAGAAAC 60.485 52.174 0.00 0.00 0.00 2.78
2251 2276 0.530650 AGAGCGAGAGAGCGAGAGAG 60.531 60.000 0.00 0.00 43.00 3.20
2258 2283 1.202580 AGAGAGAGAGAGCGAGAGAGC 60.203 57.143 0.00 0.00 37.41 4.09
2266 2291 6.113411 ACTACTGTAAAGAGAGAGAGAGAGC 58.887 44.000 0.00 0.00 0.00 4.09
2281 2306 9.551734 TCTCGCTAGTGAATTATACTACTGTAA 57.448 33.333 7.52 0.00 31.80 2.41
2440 2476 3.127548 GCATAGTGAGTTGACATGGTTGG 59.872 47.826 0.00 0.00 0.00 3.77
2472 2512 9.726034 GTGTGCATTAAAAATGTATCTTTTTCG 57.274 29.630 0.00 0.00 38.76 3.46
2498 2553 5.332506 GGTGTCTTTTTCATGAATTGTTGCG 60.333 40.000 9.40 0.00 0.00 4.85
2671 2737 2.167693 CCACTTGTAGCTACGGGAATCA 59.832 50.000 18.74 0.00 0.00 2.57
2680 2746 4.816126 AGATGATACCCCACTTGTAGCTA 58.184 43.478 0.00 0.00 0.00 3.32
2681 2747 3.643792 GAGATGATACCCCACTTGTAGCT 59.356 47.826 0.00 0.00 0.00 3.32
2684 2750 6.027025 ACTAGAGATGATACCCCACTTGTA 57.973 41.667 0.00 0.00 0.00 2.41
2688 2754 4.884961 ACAACTAGAGATGATACCCCACT 58.115 43.478 0.00 0.00 0.00 4.00
2690 2756 7.931015 AAATACAACTAGAGATGATACCCCA 57.069 36.000 0.00 0.00 0.00 4.96
2712 2778 7.308348 CGAAAATAGAAGCCACAAAGGAGTAAA 60.308 37.037 0.00 0.00 41.22 2.01
2751 2817 3.900601 TGTCACCCCATACAATTTTTGCT 59.099 39.130 0.00 0.00 0.00 3.91
2752 2818 4.264460 TGTCACCCCATACAATTTTTGC 57.736 40.909 0.00 0.00 0.00 3.68
2775 6154 3.485394 TCATGTGTGCTTTGGTACATGT 58.515 40.909 2.69 2.69 46.37 3.21
2785 6164 4.675510 CAGTTTTTGACTCATGTGTGCTT 58.324 39.130 4.90 0.00 36.10 3.91
2795 6174 5.762045 TCTTATGCTTGCAGTTTTTGACTC 58.238 37.500 0.87 0.00 36.10 3.36
2963 6344 9.942526 TCCATGAGGAATAGCTTGAGATATATA 57.057 33.333 0.00 0.00 42.23 0.86
2994 6375 4.476297 TGGAGTGTTGTAGGAACTCTGTA 58.524 43.478 0.00 0.00 41.75 2.74
3030 6411 7.551585 TCATCTATAGCTTTTATGCTCTAGGC 58.448 38.462 0.00 0.00 42.97 3.93
3081 6462 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3082 6463 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3083 6464 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3101 6482 9.570488 CACTAACTTTAGTAATCTAAACGCTCT 57.430 33.333 1.30 0.00 41.82 4.09
3102 6483 9.565213 TCACTAACTTTAGTAATCTAAACGCTC 57.435 33.333 1.30 0.00 41.82 5.03
3133 6514 9.813446 CCCTTCGTAAACTAATATAAGAGTGTT 57.187 33.333 0.00 0.00 0.00 3.32
3134 6515 9.193806 TCCCTTCGTAAACTAATATAAGAGTGT 57.806 33.333 0.00 0.00 0.00 3.55
3135 6516 9.680315 CTCCCTTCGTAAACTAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
3136 6517 9.418839 ACTCCCTTCGTAAACTAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
3147 6528 9.813446 CTTATTATTGTACTCCCTTCGTAAACT 57.187 33.333 0.00 0.00 0.00 2.66
3148 6529 9.591792 ACTTATTATTGTACTCCCTTCGTAAAC 57.408 33.333 0.00 0.00 0.00 2.01
3151 6532 8.571336 GCTACTTATTATTGTACTCCCTTCGTA 58.429 37.037 0.00 0.00 0.00 3.43
3152 6533 7.432059 GCTACTTATTATTGTACTCCCTTCGT 58.568 38.462 0.00 0.00 0.00 3.85
3153 6534 6.581542 CGCTACTTATTATTGTACTCCCTTCG 59.418 42.308 0.00 0.00 0.00 3.79
3154 6535 7.655490 TCGCTACTTATTATTGTACTCCCTTC 58.345 38.462 0.00 0.00 0.00 3.46
3155 6536 7.592885 TCGCTACTTATTATTGTACTCCCTT 57.407 36.000 0.00 0.00 0.00 3.95
3156 6537 7.778185 ATCGCTACTTATTATTGTACTCCCT 57.222 36.000 0.00 0.00 0.00 4.20
3157 6538 8.305317 AGAATCGCTACTTATTATTGTACTCCC 58.695 37.037 0.00 0.00 0.00 4.30
3158 6539 9.344309 GAGAATCGCTACTTATTATTGTACTCC 57.656 37.037 0.00 0.00 0.00 3.85
3161 6542 9.894783 TGAGAGAATCGCTACTTATTATTGTAC 57.105 33.333 0.00 0.00 42.67 2.90
3163 6544 9.250624 GTTGAGAGAATCGCTACTTATTATTGT 57.749 33.333 0.00 0.00 42.67 2.71
3164 6545 9.249457 TGTTGAGAGAATCGCTACTTATTATTG 57.751 33.333 0.00 0.00 40.72 1.90
3177 6558 4.687948 AGACATGTTGTGTTGAGAGAATCG 59.312 41.667 0.00 0.00 42.36 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.