Multiple sequence alignment - TraesCS6A01G103700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G103700 chr6A 100.000 3740 0 0 1 3740 72972536 72976275 0.000000e+00 6907
1 TraesCS6A01G103700 chr6A 87.202 461 51 4 1842 2302 3633001 3633453 5.540000e-143 518
2 TraesCS6A01G103700 chr3A 95.732 3140 69 24 623 3737 11236995 11233896 0.000000e+00 4996
3 TraesCS6A01G103700 chr3A 91.775 1459 77 14 2309 3738 217961361 217959917 0.000000e+00 1989
4 TraesCS6A01G103700 chr3A 87.441 1481 98 47 582 2014 217962911 217961471 0.000000e+00 1624
5 TraesCS6A01G103700 chr3A 93.511 863 40 5 2887 3738 721022058 721022915 0.000000e+00 1269
6 TraesCS6A01G103700 chr3A 92.563 874 38 7 2887 3738 720985128 720985996 0.000000e+00 1229
7 TraesCS6A01G103700 chr3A 91.320 553 25 8 582 1134 726714176 726714705 0.000000e+00 734
8 TraesCS6A01G103700 chr3A 86.551 461 54 4 1842 2302 12634779 12635231 5.580000e-138 501
9 TraesCS6A01G103700 chr3A 85.326 368 25 13 582 946 720983220 720983561 1.650000e-93 353
10 TraesCS6A01G103700 chr3A 83.427 356 26 16 230 582 706782504 706782829 2.180000e-77 300
11 TraesCS6A01G103700 chr7B 92.823 1449 72 12 2309 3738 714303096 714304531 0.000000e+00 2071
12 TraesCS6A01G103700 chr7B 88.730 488 41 10 1858 2339 709586361 709586840 5.380000e-163 584
13 TraesCS6A01G103700 chr7B 86.355 557 30 13 852 1380 706979913 706979375 1.950000e-157 566
14 TraesCS6A01G103700 chr7B 87.202 461 51 4 1842 2302 133702677 133703129 5.540000e-143 518
15 TraesCS6A01G103700 chr7B 86.985 461 52 4 1842 2302 616409241 616408789 2.580000e-141 512
16 TraesCS6A01G103700 chr7A 92.749 1448 71 14 2309 3737 718438198 718436766 0.000000e+00 2061
17 TraesCS6A01G103700 chr7A 92.192 1460 71 14 2309 3738 48001587 48003033 0.000000e+00 2025
18 TraesCS6A01G103700 chr7A 91.712 1460 77 14 2309 3738 91012061 91010616 0.000000e+00 1986
19 TraesCS6A01G103700 chr7A 90.847 1464 91 19 2309 3738 20774183 20775637 0.000000e+00 1921
20 TraesCS6A01G103700 chr7A 90.512 1465 93 22 2309 3738 24428627 24430080 0.000000e+00 1893
21 TraesCS6A01G103700 chr7A 88.184 1481 86 34 582 2014 718439747 718438308 0.000000e+00 1683
22 TraesCS6A01G103700 chr7A 88.116 1481 87 34 582 2014 91013610 91012171 0.000000e+00 1677
23 TraesCS6A01G103700 chr7A 93.326 869 47 6 1155 2014 692046341 692047207 0.000000e+00 1273
24 TraesCS6A01G103700 chr7A 88.119 808 58 15 582 1380 663799324 663800102 0.000000e+00 926
25 TraesCS6A01G103700 chr7A 84.170 777 81 28 621 1380 24427146 24427897 0.000000e+00 715
26 TraesCS6A01G103700 chr7A 82.861 776 84 27 621 1380 20772710 20773452 0.000000e+00 651
27 TraesCS6A01G103700 chr7A 85.598 368 24 13 582 946 692045806 692046147 3.550000e-95 359
28 TraesCS6A01G103700 chr7A 82.749 371 26 7 579 947 48000598 48000932 2.820000e-76 296
29 TraesCS6A01G103700 chr5A 92.192 1460 70 14 2309 3738 565689256 565687811 0.000000e+00 2025
30 TraesCS6A01G103700 chr5A 88.327 1482 84 34 582 2014 565690807 565689366 0.000000e+00 1696
31 TraesCS6A01G103700 chr5A 86.768 461 53 4 1842 2302 513706671 513706219 1.200000e-139 507
32 TraesCS6A01G103700 chr5A 91.304 230 14 5 1 228 580280675 580280900 3.630000e-80 309
33 TraesCS6A01G103700 chr5A 88.189 127 14 1 253 379 580281012 580281137 2.330000e-32 150
34 TraesCS6A01G103700 chr3B 87.922 1482 90 33 582 2014 115499064 115500505 0.000000e+00 1663
35 TraesCS6A01G103700 chr3B 84.908 815 82 27 582 1380 735123307 735124096 0.000000e+00 785
36 TraesCS6A01G103700 chr4B 93.433 868 47 6 1155 2014 660883082 660882217 0.000000e+00 1279
37 TraesCS6A01G103700 chr4B 93.511 863 40 4 2887 3738 660881709 660880852 0.000000e+00 1269
38 TraesCS6A01G103700 chr4B 85.246 366 25 13 583 946 660883614 660883276 2.140000e-92 350
39 TraesCS6A01G103700 chrUn 93.203 868 49 6 1155 2014 271466976 271467841 0.000000e+00 1267
40 TraesCS6A01G103700 chrUn 84.417 815 86 28 582 1380 81450187 81449398 0.000000e+00 763
41 TraesCS6A01G103700 chrUn 85.598 368 24 13 582 946 48296286 48295945 3.550000e-95 359
42 TraesCS6A01G103700 chrUn 85.326 368 25 12 582 946 271466441 271466782 1.650000e-93 353
43 TraesCS6A01G103700 chr2A 93.163 863 43 5 2887 3738 41759009 41759866 0.000000e+00 1253
44 TraesCS6A01G103700 chr2A 86.985 461 52 4 1842 2302 750958942 750959394 2.580000e-141 512
45 TraesCS6A01G103700 chr2A 85.870 368 23 13 582 946 41757102 41757443 7.630000e-97 364
46 TraesCS6A01G103700 chr2A 82.595 316 32 5 3445 3738 750961531 750961845 1.330000e-64 257
47 TraesCS6A01G103700 chr4A 93.003 586 36 3 1 582 528610727 528610143 0.000000e+00 850
48 TraesCS6A01G103700 chr4A 92.491 586 40 2 1 582 528651191 528650606 0.000000e+00 835
49 TraesCS6A01G103700 chr4A 87.202 461 51 4 1842 2302 741025659 741026111 5.540000e-143 518
50 TraesCS6A01G103700 chr4A 83.416 404 28 11 569 969 17745629 17745262 4.630000e-89 339
51 TraesCS6A01G103700 chr6B 88.594 640 42 13 3129 3738 714428941 714429579 0.000000e+00 749
52 TraesCS6A01G103700 chr5B 95.946 444 18 0 139 582 63248776 63248333 0.000000e+00 721
53 TraesCS6A01G103700 chr5B 86.985 461 52 4 1842 2302 484823033 484823485 2.580000e-141 512
54 TraesCS6A01G103700 chr5B 92.667 150 10 1 1 149 63249302 63249153 8.140000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G103700 chr6A 72972536 72976275 3739 False 6907.0 6907 100.0000 1 3740 1 chr6A.!!$F2 3739
1 TraesCS6A01G103700 chr3A 11233896 11236995 3099 True 4996.0 4996 95.7320 623 3737 1 chr3A.!!$R1 3114
2 TraesCS6A01G103700 chr3A 217959917 217962911 2994 True 1806.5 1989 89.6080 582 3738 2 chr3A.!!$R2 3156
3 TraesCS6A01G103700 chr3A 721022058 721022915 857 False 1269.0 1269 93.5110 2887 3738 1 chr3A.!!$F3 851
4 TraesCS6A01G103700 chr3A 720983220 720985996 2776 False 791.0 1229 88.9445 582 3738 2 chr3A.!!$F5 3156
5 TraesCS6A01G103700 chr3A 726714176 726714705 529 False 734.0 734 91.3200 582 1134 1 chr3A.!!$F4 552
6 TraesCS6A01G103700 chr7B 714303096 714304531 1435 False 2071.0 2071 92.8230 2309 3738 1 chr7B.!!$F3 1429
7 TraesCS6A01G103700 chr7B 706979375 706979913 538 True 566.0 566 86.3550 852 1380 1 chr7B.!!$R2 528
8 TraesCS6A01G103700 chr7A 718436766 718439747 2981 True 1872.0 2061 90.4665 582 3737 2 chr7A.!!$R2 3155
9 TraesCS6A01G103700 chr7A 91010616 91013610 2994 True 1831.5 1986 89.9140 582 3738 2 chr7A.!!$R1 3156
10 TraesCS6A01G103700 chr7A 24427146 24430080 2934 False 1304.0 1893 87.3410 621 3738 2 chr7A.!!$F3 3117
11 TraesCS6A01G103700 chr7A 20772710 20775637 2927 False 1286.0 1921 86.8540 621 3738 2 chr7A.!!$F2 3117
12 TraesCS6A01G103700 chr7A 48000598 48003033 2435 False 1160.5 2025 87.4705 579 3738 2 chr7A.!!$F4 3159
13 TraesCS6A01G103700 chr7A 663799324 663800102 778 False 926.0 926 88.1190 582 1380 1 chr7A.!!$F1 798
14 TraesCS6A01G103700 chr7A 692045806 692047207 1401 False 816.0 1273 89.4620 582 2014 2 chr7A.!!$F5 1432
15 TraesCS6A01G103700 chr5A 565687811 565690807 2996 True 1860.5 2025 90.2595 582 3738 2 chr5A.!!$R2 3156
16 TraesCS6A01G103700 chr3B 115499064 115500505 1441 False 1663.0 1663 87.9220 582 2014 1 chr3B.!!$F1 1432
17 TraesCS6A01G103700 chr3B 735123307 735124096 789 False 785.0 785 84.9080 582 1380 1 chr3B.!!$F2 798
18 TraesCS6A01G103700 chr4B 660880852 660883614 2762 True 966.0 1279 90.7300 583 3738 3 chr4B.!!$R1 3155
19 TraesCS6A01G103700 chrUn 271466441 271467841 1400 False 810.0 1267 89.2645 582 2014 2 chrUn.!!$F1 1432
20 TraesCS6A01G103700 chrUn 81449398 81450187 789 True 763.0 763 84.4170 582 1380 1 chrUn.!!$R2 798
21 TraesCS6A01G103700 chr2A 41757102 41759866 2764 False 808.5 1253 89.5165 582 3738 2 chr2A.!!$F1 3156
22 TraesCS6A01G103700 chr2A 750958942 750961845 2903 False 384.5 512 84.7900 1842 3738 2 chr2A.!!$F2 1896
23 TraesCS6A01G103700 chr4A 528610143 528610727 584 True 850.0 850 93.0030 1 582 1 chr4A.!!$R2 581
24 TraesCS6A01G103700 chr4A 528650606 528651191 585 True 835.0 835 92.4910 1 582 1 chr4A.!!$R3 581
25 TraesCS6A01G103700 chr6B 714428941 714429579 638 False 749.0 749 88.5940 3129 3738 1 chr6B.!!$F1 609
26 TraesCS6A01G103700 chr5B 63248333 63249302 969 True 468.0 721 94.3065 1 582 2 chr5B.!!$R1 581


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 816 0.181587 TTTTCTCGGTCTGGTGCCAA 59.818 50.0 0.0 0.0 0.00 4.52 F
538 927 0.317160 CCTCTGTGCGTCCTACACAA 59.683 55.0 0.0 0.0 46.71 3.33 F
600 992 0.319125 TGCGTTTTGATTTTCGGCCC 60.319 50.0 0.0 0.0 0.00 5.80 F
749 1147 0.468226 TCCGCTGAGACAAAACCACT 59.532 50.0 0.0 0.0 0.00 4.00 F
750 1148 0.588252 CCGCTGAGACAAAACCACTG 59.412 55.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2546 1.139163 CATGCCAAAAGAACAACGGC 58.861 50.000 0.00 0.00 43.28 5.68 R
2073 2632 1.620323 ACCTTTGCAAGATCTTTGGGC 59.380 47.619 4.86 7.28 0.00 5.36 R
2103 2662 3.009026 TGCATCGTGTGAACAAGCATAT 58.991 40.909 0.00 0.00 0.00 1.78 R
2694 4566 5.983333 AAGGATCAGGATGGATGTAGTTT 57.017 39.130 0.00 0.00 36.16 2.66 R
3182 5115 2.851263 TATCTTCCGCCACTTTGTGT 57.149 45.000 0.00 0.00 0.00 3.72 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.351711 CCACCTGAAGATAGTGAAGAGACAAT 60.352 42.308 0.00 0.00 33.21 2.71
128 130 4.511826 GTGTCTTCGACTTCCATTGAAACT 59.488 41.667 0.00 0.00 33.15 2.66
220 609 1.135315 CACCACAAATCGAGCCATTGG 60.135 52.381 0.00 0.00 0.00 3.16
241 630 2.421529 GCTATCGGACACCCATTTTCCT 60.422 50.000 0.00 0.00 0.00 3.36
316 705 0.395311 CAGAGCATGCCTTCACCCAT 60.395 55.000 15.66 0.00 0.00 4.00
389 778 1.877443 GCTGTGGTGGTACGAAACAAT 59.123 47.619 0.00 0.00 0.00 2.71
416 805 2.092838 GTCGAGTTGCATCTTTTCTCGG 59.907 50.000 11.78 0.00 44.99 4.63
427 816 0.181587 TTTTCTCGGTCTGGTGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
449 838 1.072965 AGTGGGGAAAGAAGAGTGCTG 59.927 52.381 0.00 0.00 0.00 4.41
451 840 0.693049 GGGGAAAGAAGAGTGCTGGA 59.307 55.000 0.00 0.00 0.00 3.86
538 927 0.317160 CCTCTGTGCGTCCTACACAA 59.683 55.000 0.00 0.00 46.71 3.33
572 964 3.176411 AGACCATCAGACCATCACTTCA 58.824 45.455 0.00 0.00 0.00 3.02
600 992 0.319125 TGCGTTTTGATTTTCGGCCC 60.319 50.000 0.00 0.00 0.00 5.80
664 1057 2.965831 GCCGATATATGGGCCTATCAGA 59.034 50.000 24.22 0.00 44.76 3.27
666 1059 3.960755 CCGATATATGGGCCTATCAGACA 59.039 47.826 4.16 0.00 0.00 3.41
724 1122 0.818296 GCTTCGAGAGCCTTCCAGTA 59.182 55.000 7.98 0.00 46.01 2.74
749 1147 0.468226 TCCGCTGAGACAAAACCACT 59.532 50.000 0.00 0.00 0.00 4.00
750 1148 0.588252 CCGCTGAGACAAAACCACTG 59.412 55.000 0.00 0.00 0.00 3.66
754 1152 2.682856 GCTGAGACAAAACCACTGAACA 59.317 45.455 0.00 0.00 0.00 3.18
804 1203 0.833834 CTGTCCCTCCTCCTGTGTGT 60.834 60.000 0.00 0.00 0.00 3.72
829 1228 4.012895 CCGTTGCGCACAGGACAC 62.013 66.667 21.98 10.72 0.00 3.67
830 1229 3.268603 CGTTGCGCACAGGACACA 61.269 61.111 11.12 0.00 0.00 3.72
843 1242 1.216444 GACACATCTCAGGCGAGCA 59.784 57.895 0.00 0.00 39.30 4.26
1116 1582 3.186409 TCTTGATGCAGTTTTCAGTACGC 59.814 43.478 0.00 0.00 0.00 4.42
1117 1583 2.488952 TGATGCAGTTTTCAGTACGCA 58.511 42.857 0.00 0.00 32.65 5.24
1263 1779 5.839606 GCTTTAGATTTAGGAGAGGTCCCTA 59.160 44.000 0.00 0.00 45.26 3.53
1586 2140 1.081094 TGAGATGATGCTTGTGTGCG 58.919 50.000 0.00 0.00 35.36 5.34
1758 2315 6.151985 TGGTTAATTTCAATGTTCAGCGGTAT 59.848 34.615 0.00 0.00 0.00 2.73
1987 2546 8.414778 CCTTAGTTACCTACTCTTCATAACTGG 58.585 40.741 5.44 0.00 36.87 4.00
2022 2581 3.010027 TGGCATGTGATTTTCAGGTCCTA 59.990 43.478 0.00 0.00 0.00 2.94
2103 2662 9.905713 AAAGATCTTGCAAAGGTATTACTATGA 57.094 29.630 9.17 0.00 37.53 2.15
2159 2718 9.011095 CATATGATCTTGATTTGCTAGGTTCAT 57.989 33.333 0.00 0.00 32.36 2.57
2345 4214 1.164041 AAGTGGAAAAGGACGCACCG 61.164 55.000 0.00 0.00 44.74 4.94
2445 4314 3.688414 GCCCATACCCTGTTGCTTAGAAT 60.688 47.826 0.00 0.00 0.00 2.40
2446 4315 4.137543 CCCATACCCTGTTGCTTAGAATC 58.862 47.826 0.00 0.00 0.00 2.52
2447 4316 4.141390 CCCATACCCTGTTGCTTAGAATCT 60.141 45.833 0.00 0.00 0.00 2.40
2448 4317 4.818546 CCATACCCTGTTGCTTAGAATCTG 59.181 45.833 0.00 0.00 0.00 2.90
2449 4318 2.716217 ACCCTGTTGCTTAGAATCTGC 58.284 47.619 0.00 0.00 0.00 4.26
2694 4566 7.060421 AGTGGAAGAAGAAAATTCTGGTGTTA 58.940 34.615 0.00 0.00 37.65 2.41
2786 4662 5.902613 TCAAGAAGCTTTTGGATGTATGG 57.097 39.130 16.28 0.00 0.00 2.74
3151 5083 7.949690 TGACTATTGTTCTACTAGCCACTTA 57.050 36.000 0.00 0.00 0.00 2.24
3152 5084 7.769220 TGACTATTGTTCTACTAGCCACTTAC 58.231 38.462 0.00 0.00 0.00 2.34
3153 5085 7.614583 TGACTATTGTTCTACTAGCCACTTACT 59.385 37.037 0.00 0.00 0.00 2.24
3341 5280 4.620184 GCTTCTGTTTCAATGTCATGCTTC 59.380 41.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.217278 TGGTATTGTTTTTATTAGTAAGCACGA 57.783 29.630 0.00 0.00 0.00 4.35
89 90 4.946478 AGACACTACTGCTTCAGTCTTT 57.054 40.909 2.39 0.00 41.21 2.52
180 569 2.076863 GAATTGGTGACAGGTTCTCCG 58.923 52.381 0.00 0.00 44.54 4.63
220 609 1.947456 GGAAAATGGGTGTCCGATAGC 59.053 52.381 0.00 0.00 35.24 2.97
223 612 1.340991 CCAGGAAAATGGGTGTCCGAT 60.341 52.381 0.00 0.00 36.64 4.18
228 617 2.814097 CGTTCTCCAGGAAAATGGGTGT 60.814 50.000 0.00 0.00 41.01 4.16
241 630 0.534203 GCCTCAAACACCGTTCTCCA 60.534 55.000 0.00 0.00 0.00 3.86
389 778 3.319137 AAGATGCAACTCGACTTGCTA 57.681 42.857 24.05 14.36 45.79 3.49
412 801 0.535102 ACTTTTGGCACCAGACCGAG 60.535 55.000 0.00 0.00 0.00 4.63
416 805 1.463553 CCCCACTTTTGGCACCAGAC 61.464 60.000 0.00 0.00 42.35 3.51
427 816 2.175715 AGCACTCTTCTTTCCCCACTTT 59.824 45.455 0.00 0.00 0.00 2.66
538 927 1.836802 GATGGTCTCTCCTTTCCTGCT 59.163 52.381 0.00 0.00 37.07 4.24
572 964 3.848272 AATCAAAACGCATCCAACGAT 57.152 38.095 0.00 0.00 0.00 3.73
630 1023 2.347691 TATCGGCCCCTAGCGAGACA 62.348 60.000 0.00 0.00 45.17 3.41
662 1055 5.306678 TCAAACTGGGCCAAATTATTTGTCT 59.693 36.000 8.04 0.00 38.98 3.41
664 1057 5.559148 TCAAACTGGGCCAAATTATTTGT 57.441 34.783 8.04 0.00 38.98 2.83
666 1059 8.476064 AAAAATCAAACTGGGCCAAATTATTT 57.524 26.923 8.04 7.60 0.00 1.40
749 1147 1.493022 AGGGTTAGGCTGTTGTGTTCA 59.507 47.619 0.00 0.00 0.00 3.18
750 1148 2.271944 AGGGTTAGGCTGTTGTGTTC 57.728 50.000 0.00 0.00 0.00 3.18
754 1152 3.118738 CGATTCTAGGGTTAGGCTGTTGT 60.119 47.826 0.00 0.00 0.00 3.32
815 1214 0.950555 GAGATGTGTCCTGTGCGCAA 60.951 55.000 14.00 1.19 0.00 4.85
826 1225 1.079543 GTGCTCGCCTGAGATGTGT 60.080 57.895 0.00 0.00 45.57 3.72
829 1228 0.809241 GGAAGTGCTCGCCTGAGATG 60.809 60.000 0.00 0.00 45.57 2.90
830 1229 1.260538 TGGAAGTGCTCGCCTGAGAT 61.261 55.000 0.00 0.00 45.57 2.75
843 1242 0.905357 CGAGGAGATTGGGTGGAAGT 59.095 55.000 0.00 0.00 0.00 3.01
1116 1582 4.393990 TGCTGAAGACTGAAACTGCATATG 59.606 41.667 0.00 0.00 33.71 1.78
1117 1583 4.582869 TGCTGAAGACTGAAACTGCATAT 58.417 39.130 0.00 0.00 33.71 1.78
1263 1779 1.901159 TGCATTTGCCAGCCATTTACT 59.099 42.857 0.00 0.00 41.18 2.24
1758 2315 6.681729 AGTTCTAGAACCACCACTTAATGA 57.318 37.500 28.05 0.00 42.06 2.57
1813 2370 7.277539 TGCCAAAAAGACAAGTCAAAAACTATG 59.722 33.333 2.72 0.00 37.17 2.23
1896 2453 7.463469 AAACAAAAACAGTACAGCTTAATGC 57.537 32.000 0.00 0.00 43.29 3.56
1987 2546 1.139163 CATGCCAAAAGAACAACGGC 58.861 50.000 0.00 0.00 43.28 5.68
2022 2581 2.040278 TGCCACTCCTATTTGCAGTTCT 59.960 45.455 0.00 0.00 0.00 3.01
2073 2632 1.620323 ACCTTTGCAAGATCTTTGGGC 59.380 47.619 4.86 7.28 0.00 5.36
2103 2662 3.009026 TGCATCGTGTGAACAAGCATAT 58.991 40.909 0.00 0.00 0.00 1.78
2445 4314 8.204836 ACTAAAAAGAAGAGACTTACAAGCAGA 58.795 33.333 0.00 0.00 0.00 4.26
2446 4315 8.279103 CACTAAAAAGAAGAGACTTACAAGCAG 58.721 37.037 0.00 0.00 0.00 4.24
2447 4316 7.769044 ACACTAAAAAGAAGAGACTTACAAGCA 59.231 33.333 0.00 0.00 0.00 3.91
2448 4317 8.144155 ACACTAAAAAGAAGAGACTTACAAGC 57.856 34.615 0.00 0.00 0.00 4.01
2694 4566 5.983333 AAGGATCAGGATGGATGTAGTTT 57.017 39.130 0.00 0.00 36.16 2.66
3182 5115 2.851263 TATCTTCCGCCACTTTGTGT 57.149 45.000 0.00 0.00 0.00 3.72
3194 5127 5.059833 AGTTCTGCATCGGAATTATCTTCC 58.940 41.667 0.00 0.00 31.07 3.46
3290 5229 3.443681 GCTTGCCTACATCCAAAAGCTTA 59.556 43.478 0.00 0.00 37.60 3.09
3321 5260 4.064388 TCGAAGCATGACATTGAAACAGA 58.936 39.130 0.00 0.00 0.00 3.41
3341 5280 2.095567 CAGCTCCAAAAGACAACCATCG 60.096 50.000 0.00 0.00 0.00 3.84
3615 5671 3.670991 CGAAATTCGGCCAAAATTCGAAA 59.329 39.130 19.63 0.00 44.30 3.46



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.