Multiple sequence alignment - TraesCS6A01G102800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G102800 chr6A 100.000 3311 0 0 1 3311 71923719 71927029 0.000000e+00 6115
1 TraesCS6A01G102800 chr6A 88.025 2522 251 27 831 3311 71948498 71951009 0.000000e+00 2937
2 TraesCS6A01G102800 chr6A 77.213 1457 284 37 991 2424 72429422 72430853 0.000000e+00 808
3 TraesCS6A01G102800 chr6D 95.262 2343 78 12 988 3311 57158826 57161154 0.000000e+00 3681
4 TraesCS6A01G102800 chr6D 87.971 2519 236 26 831 3311 57171121 57173610 0.000000e+00 2911
5 TraesCS6A01G102800 chr6D 89.239 985 58 19 1 975 57157637 57158583 0.000000e+00 1188
6 TraesCS6A01G102800 chr6D 77.145 1352 248 39 988 2322 57514181 57515488 0.000000e+00 728
7 TraesCS6A01G102800 chr6D 80.499 641 102 18 991 1619 57215899 57216528 1.390000e-128 470
8 TraesCS6A01G102800 chr6B 88.753 2445 218 20 904 3311 129237069 129239493 0.000000e+00 2939
9 TraesCS6A01G102800 chr6B 89.968 1874 164 10 904 2772 128016451 128018305 0.000000e+00 2398
10 TraesCS6A01G102800 chr6B 77.426 1453 276 41 991 2418 129268682 129270107 0.000000e+00 819
11 TraesCS6A01G102800 chr6B 90.859 547 47 2 2768 3311 128018586 128019132 0.000000e+00 730
12 TraesCS6A01G102800 chr6B 92.147 382 29 1 3 384 129235089 129235469 3.760000e-149 538
13 TraesCS6A01G102800 chr6B 89.277 429 33 5 384 803 128014776 128015200 2.930000e-145 525
14 TraesCS6A01G102800 chr6B 90.838 382 34 1 3 384 128014425 128014805 8.200000e-141 510
15 TraesCS6A01G102800 chr6B 89.157 415 25 10 384 789 129235440 129235843 1.770000e-137 499


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G102800 chr6A 71923719 71927029 3310 False 6115.000000 6115 100.0000 1 3311 1 chr6A.!!$F1 3310
1 TraesCS6A01G102800 chr6A 71948498 71951009 2511 False 2937.000000 2937 88.0250 831 3311 1 chr6A.!!$F2 2480
2 TraesCS6A01G102800 chr6A 72429422 72430853 1431 False 808.000000 808 77.2130 991 2424 1 chr6A.!!$F3 1433
3 TraesCS6A01G102800 chr6D 57171121 57173610 2489 False 2911.000000 2911 87.9710 831 3311 1 chr6D.!!$F1 2480
4 TraesCS6A01G102800 chr6D 57157637 57161154 3517 False 2434.500000 3681 92.2505 1 3311 2 chr6D.!!$F4 3310
5 TraesCS6A01G102800 chr6D 57514181 57515488 1307 False 728.000000 728 77.1450 988 2322 1 chr6D.!!$F3 1334
6 TraesCS6A01G102800 chr6D 57215899 57216528 629 False 470.000000 470 80.4990 991 1619 1 chr6D.!!$F2 628
7 TraesCS6A01G102800 chr6B 129235089 129239493 4404 False 1325.333333 2939 90.0190 3 3311 3 chr6B.!!$F3 3308
8 TraesCS6A01G102800 chr6B 128014425 128019132 4707 False 1040.750000 2398 90.2355 3 3311 4 chr6B.!!$F2 3308
9 TraesCS6A01G102800 chr6B 129268682 129270107 1425 False 819.000000 819 77.4260 991 2418 1 chr6B.!!$F1 1427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 0.179161 CCTGCGACTACGGTGAAGAG 60.179 60.0 0.0 0.0 40.15 2.85 F
379 380 0.240145 TGCGACTACGGTGAAGAGTG 59.760 55.0 0.0 0.0 40.15 3.51 F
380 381 0.240411 GCGACTACGGTGAAGAGTGT 59.760 55.0 0.0 0.0 40.15 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 3628 0.107361 GGACAATGGTACCCCGGAAG 60.107 60.000 10.07 0.00 0.00 3.46 R
2190 3677 2.163509 TCAGAAGTCTTGACCTCGAGG 58.836 52.381 30.11 30.11 42.17 4.63 R
2348 3836 6.535150 CACATCTACACGAACAATTAGGACAT 59.465 38.462 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.967887 AGCTCAAACAAGGGCATCTTTT 59.032 40.909 0.00 0.00 32.41 2.27
152 153 6.413052 ACTATGAGTAGTAGGAACGAAGTGA 58.587 40.000 0.00 0.00 38.74 3.41
160 161 5.068636 AGTAGGAACGAAGTGACTGTAAGA 58.931 41.667 0.00 0.00 45.00 2.10
183 184 4.660168 AGGAATATGGATGCCTCAACATC 58.340 43.478 0.00 0.00 36.07 3.06
200 201 1.548357 ATCACAGAAGAGGCCTGCGT 61.548 55.000 12.00 0.00 35.14 5.24
244 245 0.827925 AGCCTCCTCGTCACACTTCA 60.828 55.000 0.00 0.00 0.00 3.02
250 251 0.710567 CTCGTCACACTTCACATCGC 59.289 55.000 0.00 0.00 0.00 4.58
258 259 1.325640 CACTTCACATCGCCATCTTCG 59.674 52.381 0.00 0.00 0.00 3.79
272 273 6.873605 TCGCCATCTTCGTCAATATTATGATT 59.126 34.615 0.00 0.00 0.00 2.57
279 280 8.708742 TCTTCGTCAATATTATGATTTAAGCCG 58.291 33.333 0.00 0.00 0.00 5.52
301 302 0.439985 CACTTCTCGTGGTCAATGCG 59.560 55.000 0.00 0.00 40.02 4.73
321 322 1.344226 CTCGTCAACATCGCGCTTCA 61.344 55.000 5.56 0.00 0.00 3.02
362 363 3.209410 CATCCTCACCACTATTTCCTGC 58.791 50.000 0.00 0.00 0.00 4.85
363 364 1.207089 TCCTCACCACTATTTCCTGCG 59.793 52.381 0.00 0.00 0.00 5.18
364 365 1.207089 CCTCACCACTATTTCCTGCGA 59.793 52.381 0.00 0.00 0.00 5.10
365 366 2.271800 CTCACCACTATTTCCTGCGAC 58.728 52.381 0.00 0.00 0.00 5.19
366 367 1.899814 TCACCACTATTTCCTGCGACT 59.100 47.619 0.00 0.00 0.00 4.18
367 368 3.093814 TCACCACTATTTCCTGCGACTA 58.906 45.455 0.00 0.00 0.00 2.59
368 369 3.119245 TCACCACTATTTCCTGCGACTAC 60.119 47.826 0.00 0.00 0.00 2.73
369 370 2.159282 ACCACTATTTCCTGCGACTACG 60.159 50.000 0.00 0.00 42.93 3.51
370 371 2.460918 CACTATTTCCTGCGACTACGG 58.539 52.381 0.00 0.00 40.15 4.02
371 372 2.097825 ACTATTTCCTGCGACTACGGT 58.902 47.619 0.00 0.00 40.15 4.83
372 373 2.159282 ACTATTTCCTGCGACTACGGTG 60.159 50.000 0.00 0.00 40.15 4.94
373 374 0.892755 ATTTCCTGCGACTACGGTGA 59.107 50.000 0.00 0.00 40.15 4.02
374 375 0.675083 TTTCCTGCGACTACGGTGAA 59.325 50.000 0.00 0.00 40.15 3.18
375 376 0.242825 TTCCTGCGACTACGGTGAAG 59.757 55.000 0.00 0.00 40.15 3.02
376 377 0.607217 TCCTGCGACTACGGTGAAGA 60.607 55.000 0.00 0.00 40.15 2.87
377 378 0.179161 CCTGCGACTACGGTGAAGAG 60.179 60.000 0.00 0.00 40.15 2.85
378 379 0.522180 CTGCGACTACGGTGAAGAGT 59.478 55.000 0.00 0.00 40.15 3.24
379 380 0.240145 TGCGACTACGGTGAAGAGTG 59.760 55.000 0.00 0.00 40.15 3.51
380 381 0.240411 GCGACTACGGTGAAGAGTGT 59.760 55.000 0.00 0.00 40.15 3.55
381 382 1.965083 CGACTACGGTGAAGAGTGTG 58.035 55.000 0.00 0.00 35.72 3.82
382 383 1.534163 CGACTACGGTGAAGAGTGTGA 59.466 52.381 0.00 0.00 35.72 3.58
383 384 2.031420 CGACTACGGTGAAGAGTGTGAA 60.031 50.000 0.00 0.00 35.72 3.18
384 385 3.366070 CGACTACGGTGAAGAGTGTGAAT 60.366 47.826 0.00 0.00 35.72 2.57
385 386 4.557205 GACTACGGTGAAGAGTGTGAATT 58.443 43.478 0.00 0.00 0.00 2.17
386 387 4.957296 ACTACGGTGAAGAGTGTGAATTT 58.043 39.130 0.00 0.00 0.00 1.82
387 388 4.989168 ACTACGGTGAAGAGTGTGAATTTC 59.011 41.667 0.00 0.00 0.00 2.17
388 389 3.139077 ACGGTGAAGAGTGTGAATTTCC 58.861 45.455 0.00 0.00 0.00 3.13
389 390 3.181454 ACGGTGAAGAGTGTGAATTTCCT 60.181 43.478 0.00 0.00 0.00 3.36
390 391 3.187227 CGGTGAAGAGTGTGAATTTCCTG 59.813 47.826 0.00 0.00 0.00 3.86
446 447 1.740296 CTTGTGGCGGTTACCCTCG 60.740 63.158 0.00 0.00 0.00 4.63
551 552 8.608844 ACATCGGATACAAATAATTCTCCTTC 57.391 34.615 0.00 0.00 0.00 3.46
555 556 7.652105 TCGGATACAAATAATTCTCCTTCGAAG 59.348 37.037 18.51 18.51 0.00 3.79
563 564 2.550830 TCTCCTTCGAAGCTGCTTTT 57.449 45.000 19.99 0.00 0.00 2.27
564 565 3.678056 TCTCCTTCGAAGCTGCTTTTA 57.322 42.857 19.99 4.95 0.00 1.52
565 566 4.002906 TCTCCTTCGAAGCTGCTTTTAA 57.997 40.909 19.99 12.35 0.00 1.52
626 635 6.348704 CGTTTTTGTACTAACCCATAACCCAG 60.349 42.308 0.00 0.00 0.00 4.45
639 648 4.381932 CCATAACCCAGGCACAAATCTTTC 60.382 45.833 0.00 0.00 0.00 2.62
643 652 1.068333 CCAGGCACAAATCTTTCCGTG 60.068 52.381 0.00 0.00 0.00 4.94
644 653 1.068333 CAGGCACAAATCTTTCCGTGG 60.068 52.381 0.00 0.00 0.00 4.94
756 767 2.433664 CGACCACCGTGGGCTTAC 60.434 66.667 21.49 6.41 45.79 2.34
771 1997 3.396911 TTACTCGAGCTCGGCTGCG 62.397 63.158 33.98 19.28 39.88 5.18
984 2221 0.621571 TCATCCCCTTCCTCCCACTG 60.622 60.000 0.00 0.00 0.00 3.66
985 2222 0.916358 CATCCCCTTCCTCCCACTGT 60.916 60.000 0.00 0.00 0.00 3.55
986 2223 0.621862 ATCCCCTTCCTCCCACTGTC 60.622 60.000 0.00 0.00 0.00 3.51
987 2224 2.301738 CCCCTTCCTCCCACTGTCC 61.302 68.421 0.00 0.00 0.00 4.02
988 2225 2.301738 CCCTTCCTCCCACTGTCCC 61.302 68.421 0.00 0.00 0.00 4.46
989 2226 1.538876 CCTTCCTCCCACTGTCCCA 60.539 63.158 0.00 0.00 0.00 4.37
990 2227 1.679898 CTTCCTCCCACTGTCCCAC 59.320 63.158 0.00 0.00 0.00 4.61
1116 2584 4.841861 CCCCGTTTCCGCCGCATA 62.842 66.667 0.00 0.00 0.00 3.14
1405 2881 0.320374 GTGTGATCCCTTGTCACGGA 59.680 55.000 0.00 0.00 46.89 4.69
1514 2997 4.063689 GGCGATGATGAAGATGAGATGTT 58.936 43.478 0.00 0.00 0.00 2.71
1926 3413 7.397761 GGCATTGTAGTAGGTAGAGAAGGATAT 59.602 40.741 0.00 0.00 0.00 1.63
2073 3560 5.171476 CCTCGCGGATATGATTATTTCACT 58.829 41.667 6.13 0.00 37.11 3.41
2115 3602 4.362677 TCTTATTCCTTGGAGCCACTACT 58.637 43.478 0.00 0.00 0.00 2.57
2116 3603 4.406003 TCTTATTCCTTGGAGCCACTACTC 59.594 45.833 0.00 0.00 35.86 2.59
2141 3628 9.060347 TCAAGATCAAGTGGATTTTGATATAGC 57.940 33.333 8.98 0.00 46.40 2.97
2176 3663 3.129262 TGTCCAGGACTGATTGGGATA 57.871 47.619 20.82 0.00 35.13 2.59
2363 3855 4.154015 TGTGCTCAATGTCCTAATTGTTCG 59.846 41.667 0.00 0.00 38.46 3.95
2383 3876 6.128661 TGTTCGTGTAGATGTGATTGCTTTAC 60.129 38.462 0.00 0.00 0.00 2.01
2496 3993 8.514594 CAACTTCATTTTATACCAAGAAGAGCA 58.485 33.333 0.00 0.00 36.78 4.26
2588 4086 4.993905 AGGCGTTAATTTATCCTTTGTGC 58.006 39.130 0.00 0.00 0.00 4.57
2623 4121 7.946207 TGCTACATTTTGTTAACTGGAATTGA 58.054 30.769 7.22 0.00 0.00 2.57
2757 4256 9.880157 ATTTTCGTTTTCTAGTTACTAGGCATA 57.120 29.630 18.08 0.00 35.03 3.14
2775 4559 3.315191 GCATAAACCCGTGCAAGTATGAT 59.685 43.478 10.67 0.00 40.94 2.45
2777 4561 5.560183 GCATAAACCCGTGCAAGTATGATAC 60.560 44.000 10.67 0.00 40.94 2.24
2938 4751 3.921119 TCAAGCTGCTGTTTGGTATTG 57.079 42.857 17.69 0.00 35.51 1.90
3052 4865 4.479158 AGCCTTCCATGTTAAGGTTTTCA 58.521 39.130 19.80 0.00 44.56 2.69
3069 4882 3.876309 TTCAGCCCAGTTTTTCCTAGT 57.124 42.857 0.00 0.00 0.00 2.57
3194 5007 2.008268 GATTTGGCACATGCTCCGGG 62.008 60.000 0.00 0.00 39.30 5.73
3223 5037 5.241064 TGGACAGATTATAGTTAGACTCCGC 59.759 44.000 0.00 0.00 0.00 5.54
3281 5096 4.912187 CCACATGATATCTAAGACGACACG 59.088 45.833 0.00 0.00 0.00 4.49
3305 5122 5.236478 GGACGTAATAAGATTCACACCATGG 59.764 44.000 11.19 11.19 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.285003 TCCTCCTGGAAGAACGTTCATTTA 59.715 41.667 28.78 12.14 39.87 1.40
76 77 2.413765 GCCTCGATCTCGGGTGAC 59.586 66.667 0.00 0.00 38.37 3.67
79 80 2.203365 ATCGCCTCGATCTCGGGT 60.203 61.111 0.00 0.00 43.45 5.28
152 153 5.370880 AGGCATCCATATTCCTTCTTACAGT 59.629 40.000 0.00 0.00 0.00 3.55
160 161 4.524802 TGTTGAGGCATCCATATTCCTT 57.475 40.909 0.00 0.00 0.00 3.36
183 184 2.031516 CACGCAGGCCTCTTCTGTG 61.032 63.158 0.00 0.52 45.27 3.66
200 201 5.410355 TCATTGATATGATCTCATCGGCA 57.590 39.130 0.00 0.00 35.87 5.69
244 245 2.315925 ATTGACGAAGATGGCGATGT 57.684 45.000 0.00 0.00 0.00 3.06
258 259 8.015658 GTGACCGGCTTAAATCATAATATTGAC 58.984 37.037 0.00 0.00 0.00 3.18
272 273 0.963962 ACGAGAAGTGACCGGCTTAA 59.036 50.000 0.00 0.00 0.00 1.85
321 322 3.728373 GACCGGGAACAGGGGCAT 61.728 66.667 6.32 0.00 31.26 4.40
362 363 1.534163 TCACACTCTTCACCGTAGTCG 59.466 52.381 0.00 0.00 0.00 4.18
363 364 3.637998 TTCACACTCTTCACCGTAGTC 57.362 47.619 0.00 0.00 0.00 2.59
364 365 4.602340 AATTCACACTCTTCACCGTAGT 57.398 40.909 0.00 0.00 0.00 2.73
365 366 4.389077 GGAAATTCACACTCTTCACCGTAG 59.611 45.833 0.00 0.00 0.00 3.51
366 367 4.039973 AGGAAATTCACACTCTTCACCGTA 59.960 41.667 0.00 0.00 0.00 4.02
367 368 3.139077 GGAAATTCACACTCTTCACCGT 58.861 45.455 0.00 0.00 0.00 4.83
368 369 3.187227 CAGGAAATTCACACTCTTCACCG 59.813 47.826 0.00 0.00 0.00 4.94
369 370 3.057946 GCAGGAAATTCACACTCTTCACC 60.058 47.826 0.00 0.00 0.00 4.02
370 371 3.364366 CGCAGGAAATTCACACTCTTCAC 60.364 47.826 0.00 0.00 0.00 3.18
371 372 2.807967 CGCAGGAAATTCACACTCTTCA 59.192 45.455 0.00 0.00 0.00 3.02
372 373 3.067106 TCGCAGGAAATTCACACTCTTC 58.933 45.455 0.00 0.00 0.00 2.87
373 374 2.808543 GTCGCAGGAAATTCACACTCTT 59.191 45.455 0.00 0.00 0.00 2.85
374 375 2.037772 AGTCGCAGGAAATTCACACTCT 59.962 45.455 0.00 0.00 0.00 3.24
375 376 2.417719 AGTCGCAGGAAATTCACACTC 58.582 47.619 0.00 0.00 0.00 3.51
376 377 2.550830 AGTCGCAGGAAATTCACACT 57.449 45.000 0.00 0.00 0.00 3.55
377 378 2.092211 CGTAGTCGCAGGAAATTCACAC 59.908 50.000 0.00 0.00 0.00 3.82
378 379 2.333926 CGTAGTCGCAGGAAATTCACA 58.666 47.619 0.00 0.00 0.00 3.58
379 380 1.659098 CCGTAGTCGCAGGAAATTCAC 59.341 52.381 0.00 0.00 35.54 3.18
380 381 1.274167 ACCGTAGTCGCAGGAAATTCA 59.726 47.619 0.00 0.00 35.54 2.57
381 382 1.659098 CACCGTAGTCGCAGGAAATTC 59.341 52.381 0.00 0.00 35.54 2.17
382 383 1.274167 TCACCGTAGTCGCAGGAAATT 59.726 47.619 0.00 0.00 35.54 1.82
383 384 0.892755 TCACCGTAGTCGCAGGAAAT 59.107 50.000 0.00 0.00 35.54 2.17
384 385 0.675083 TTCACCGTAGTCGCAGGAAA 59.325 50.000 0.00 0.00 35.54 3.13
385 386 0.242825 CTTCACCGTAGTCGCAGGAA 59.757 55.000 0.00 0.00 35.54 3.36
386 387 0.607217 TCTTCACCGTAGTCGCAGGA 60.607 55.000 0.00 0.00 35.54 3.86
387 388 0.179161 CTCTTCACCGTAGTCGCAGG 60.179 60.000 0.00 0.00 35.54 4.85
388 389 0.798771 GCTCTTCACCGTAGTCGCAG 60.799 60.000 0.00 0.00 35.54 5.18
389 390 1.211969 GCTCTTCACCGTAGTCGCA 59.788 57.895 0.00 0.00 35.54 5.10
390 391 1.868251 CGCTCTTCACCGTAGTCGC 60.868 63.158 0.00 0.00 35.54 5.19
446 447 7.321745 CCAATGTCTGGGTAGATTTTCTAAC 57.678 40.000 0.00 0.00 42.17 2.34
551 552 7.084486 AGTTTTCCTTATTAAAAGCAGCTTCG 58.916 34.615 8.48 0.00 0.00 3.79
555 556 9.908152 TCTTTAGTTTTCCTTATTAAAAGCAGC 57.092 29.630 0.00 0.00 0.00 5.25
579 580 8.658499 AACGTGTAATTTTGTCTAAGTTCTCT 57.342 30.769 0.00 0.00 0.00 3.10
626 635 0.243636 CCCACGGAAAGATTTGTGCC 59.756 55.000 0.00 0.00 0.00 5.01
661 671 0.247736 CCTCACCTTGGAGACGAAGG 59.752 60.000 10.17 10.17 41.51 3.46
818 2045 3.372822 GGTTGCTAATTGCGCTTAGTACA 59.627 43.478 9.73 1.00 46.63 2.90
819 2046 3.621715 AGGTTGCTAATTGCGCTTAGTAC 59.378 43.478 9.73 11.10 46.63 2.73
822 2049 2.285834 CGAGGTTGCTAATTGCGCTTAG 60.286 50.000 9.73 10.57 46.63 2.18
1116 2584 1.218316 GAAGGAGCGGTCGGTGATT 59.782 57.895 8.77 0.00 0.00 2.57
1514 2997 4.199310 GGCTAAGCATATCACCTTGAACA 58.801 43.478 0.00 0.00 0.00 3.18
1934 3421 2.557056 TGATCACCGACGAGAGAAAACT 59.443 45.455 0.00 0.00 0.00 2.66
2073 3560 1.838396 TCCCTCAGCTGCACTCACA 60.838 57.895 9.47 0.00 0.00 3.58
2115 3602 9.060347 GCTATATCAAAATCCACTTGATCTTGA 57.940 33.333 1.51 0.00 42.93 3.02
2116 3603 9.064706 AGCTATATCAAAATCCACTTGATCTTG 57.935 33.333 1.51 0.00 41.50 3.02
2141 3628 0.107361 GGACAATGGTACCCCGGAAG 60.107 60.000 10.07 0.00 0.00 3.46
2176 3663 7.374975 TGACCTCGAGGGAAAAATAATCTAT 57.625 36.000 34.04 8.83 40.27 1.98
2190 3677 2.163509 TCAGAAGTCTTGACCTCGAGG 58.836 52.381 30.11 30.11 42.17 4.63
2347 3835 7.064609 CACATCTACACGAACAATTAGGACATT 59.935 37.037 0.00 0.00 0.00 2.71
2348 3836 6.535150 CACATCTACACGAACAATTAGGACAT 59.465 38.462 0.00 0.00 0.00 3.06
2383 3876 2.959516 TGATGAGGTCTTGTAACAGCG 58.040 47.619 0.00 0.00 0.00 5.18
2496 3993 9.284968 GTTATGCAAACTTAGTGGGATATGTAT 57.715 33.333 0.00 0.00 0.00 2.29
2499 3996 7.566760 TGTTATGCAAACTTAGTGGGATATG 57.433 36.000 11.34 0.00 0.00 1.78
2757 4256 3.275999 GGTATCATACTTGCACGGGTTT 58.724 45.455 0.00 0.00 0.00 3.27
2775 4559 5.806654 ACTTCTTTTACAGGTAACCGGTA 57.193 39.130 8.00 0.00 33.35 4.02
2777 4561 6.400568 TCATACTTCTTTTACAGGTAACCGG 58.599 40.000 0.00 0.00 37.17 5.28
2917 4730 3.194116 CCAATACCAAACAGCAGCTTGAT 59.806 43.478 0.00 0.00 0.00 2.57
2925 4738 4.314740 TCACAAACCAATACCAAACAGC 57.685 40.909 0.00 0.00 0.00 4.40
3052 4865 3.558533 CCGTTACTAGGAAAAACTGGGCT 60.559 47.826 0.00 0.00 0.00 5.19
3069 4882 3.899726 AGAGAATAGAGCTGTCCCGTTA 58.100 45.455 0.00 0.00 0.00 3.18
3194 5007 8.228035 AGTCTAACTATAATCTGTCCAGTCAC 57.772 38.462 0.00 0.00 0.00 3.67
3223 5037 4.153117 GTGCTACAAAGAGAACCATGTCAG 59.847 45.833 0.00 0.00 0.00 3.51
3281 5096 5.236478 CCATGGTGTGAATCTTATTACGTCC 59.764 44.000 2.57 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.