Multiple sequence alignment - TraesCS6A01G102200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G102200 chr6A 100.000 4022 0 0 976 4997 71442822 71446843 0.000000e+00 7428
1 TraesCS6A01G102200 chr6A 100.000 563 0 0 1 563 71441847 71442409 0.000000e+00 1040
2 TraesCS6A01G102200 chr6D 92.860 2605 144 21 994 3580 56840059 56842639 0.000000e+00 3742
3 TraesCS6A01G102200 chr6D 84.222 938 86 37 4068 4997 56844847 56845730 0.000000e+00 856
4 TraesCS6A01G102200 chr6D 92.813 487 19 8 3614 4090 56842699 56843179 0.000000e+00 691
5 TraesCS6A01G102200 chr6D 91.867 332 20 2 236 563 56839691 56840019 1.640000e-124 457
6 TraesCS6A01G102200 chr6D 89.412 170 15 3 15 182 346071851 346071683 1.410000e-50 211
7 TraesCS6A01G102200 chr6D 88.824 170 18 1 15 183 287031424 287031255 1.820000e-49 207
8 TraesCS6A01G102200 chr6D 81.407 199 23 7 3084 3278 56842351 56842539 3.120000e-32 150
9 TraesCS6A01G102200 chr6B 90.063 1419 113 14 1000 2399 127317337 127318746 0.000000e+00 1814
10 TraesCS6A01G102200 chr6B 94.261 941 34 7 2548 3485 127319038 127319961 0.000000e+00 1421
11 TraesCS6A01G102200 chr6B 84.192 873 90 24 4149 4997 127320881 127321729 0.000000e+00 804
12 TraesCS6A01G102200 chr6B 93.199 544 33 4 3614 4157 127320323 127320862 0.000000e+00 797
13 TraesCS6A01G102200 chr6B 89.758 537 37 8 3084 3618 127319770 127320290 0.000000e+00 671
14 TraesCS6A01G102200 chr6B 85.484 310 18 11 250 543 127316589 127316887 1.050000e-76 298
15 TraesCS6A01G102200 chr6B 84.848 198 20 7 3084 3278 127319962 127320152 1.840000e-44 191
16 TraesCS6A01G102200 chr6B 92.913 127 8 1 2388 2513 127318920 127319046 3.070000e-42 183
17 TraesCS6A01G102200 chr1B 85.448 859 72 18 2268 3112 672850850 672851669 0.000000e+00 845
18 TraesCS6A01G102200 chr7D 84.908 868 74 20 2268 3121 568319091 568318267 0.000000e+00 824
19 TraesCS6A01G102200 chr7D 88.095 168 18 2 16 182 623691487 623691653 1.100000e-46 198
20 TraesCS6A01G102200 chr2B 90.000 270 24 1 2843 3112 745494642 745494908 3.700000e-91 346
21 TraesCS6A01G102200 chr2B 84.577 201 25 6 15 212 473343178 473343375 1.420000e-45 195
22 TraesCS6A01G102200 chr5D 90.244 164 14 2 20 182 141426133 141426295 3.920000e-51 213
23 TraesCS6A01G102200 chr4D 89.349 169 17 1 15 182 8134101 8134269 1.410000e-50 211
24 TraesCS6A01G102200 chr4D 90.123 162 14 2 15 175 67272937 67272777 5.070000e-50 209
25 TraesCS6A01G102200 chr4A 88.095 168 19 1 15 181 516358789 516358622 1.100000e-46 198
26 TraesCS6A01G102200 chr4B 88.272 162 16 3 15 174 370977423 370977583 1.840000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G102200 chr6A 71441847 71446843 4996 False 4234.000 7428 100.00000 1 4997 2 chr6A.!!$F1 4996
1 TraesCS6A01G102200 chr6D 56839691 56845730 6039 False 1179.200 3742 88.63380 236 4997 5 chr6D.!!$F1 4761
2 TraesCS6A01G102200 chr6B 127316589 127321729 5140 False 772.375 1814 89.33975 250 4997 8 chr6B.!!$F1 4747
3 TraesCS6A01G102200 chr1B 672850850 672851669 819 False 845.000 845 85.44800 2268 3112 1 chr1B.!!$F1 844
4 TraesCS6A01G102200 chr7D 568318267 568319091 824 True 824.000 824 84.90800 2268 3121 1 chr7D.!!$R1 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.035152 ACCGGATGATGTGTGTGCAT 60.035 50.0 9.46 0.00 0.00 3.96 F
175 176 0.037326 TTGAGATGTGTCCGGTCAGC 60.037 55.0 0.19 2.99 0.00 4.26 F
2016 2059 0.404040 CCCCTAAGTTTGCTGTCCCA 59.596 55.0 0.00 0.00 0.00 4.37 F
3051 3283 0.459585 TGCTTTCCGATCTGGTACGC 60.460 55.0 3.97 4.72 39.52 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2012 0.311790 CATGGGCGCGCAATTCTATT 59.688 50.0 34.42 10.13 0.00 1.73 R
2049 2092 1.215244 ATGCATCAATCAGAGACGCG 58.785 50.0 3.53 3.53 0.00 6.01 R
3531 3962 0.035881 CTCATGCCGCCTATGTGGAT 59.964 55.0 1.26 0.00 45.51 3.41 R
4204 6399 0.034059 AGTCTACACTGCACTGCACC 59.966 55.0 0.00 0.00 33.79 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.598257 GACGACAGGGGTGTCATG 57.402 61.111 6.36 0.00 38.65 3.07
18 19 1.079127 GACGACAGGGGTGTCATGG 60.079 63.158 6.36 0.00 38.65 3.66
19 20 2.436646 CGACAGGGGTGTCATGGC 60.437 66.667 6.36 0.00 38.65 4.40
20 21 2.756400 GACAGGGGTGTCATGGCA 59.244 61.111 0.00 0.00 34.82 4.92
21 22 1.074775 GACAGGGGTGTCATGGCAA 59.925 57.895 0.00 0.00 34.82 4.52
22 23 0.539438 GACAGGGGTGTCATGGCAAA 60.539 55.000 0.00 0.00 34.82 3.68
23 24 0.114954 ACAGGGGTGTCATGGCAAAT 59.885 50.000 0.00 0.00 0.00 2.32
24 25 1.269012 CAGGGGTGTCATGGCAAATT 58.731 50.000 0.00 0.00 0.00 1.82
25 26 1.624813 CAGGGGTGTCATGGCAAATTT 59.375 47.619 0.00 0.00 0.00 1.82
26 27 2.038820 CAGGGGTGTCATGGCAAATTTT 59.961 45.455 0.00 0.00 0.00 1.82
27 28 2.038820 AGGGGTGTCATGGCAAATTTTG 59.961 45.455 0.00 4.72 0.00 2.44
28 29 2.425539 GGGTGTCATGGCAAATTTTGG 58.574 47.619 0.00 0.00 0.00 3.28
29 30 2.224499 GGGTGTCATGGCAAATTTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
30 31 3.007398 GGGTGTCATGGCAAATTTTGGTA 59.993 43.478 0.00 0.00 0.00 3.25
31 32 4.244862 GGTGTCATGGCAAATTTTGGTAG 58.755 43.478 0.00 0.00 0.00 3.18
32 33 4.262420 GGTGTCATGGCAAATTTTGGTAGT 60.262 41.667 0.00 0.00 0.00 2.73
33 34 4.923281 GTGTCATGGCAAATTTTGGTAGTC 59.077 41.667 0.00 0.00 0.00 2.59
34 35 4.021544 TGTCATGGCAAATTTTGGTAGTCC 60.022 41.667 10.96 3.94 0.00 3.85
35 36 3.192422 TCATGGCAAATTTTGGTAGTCCG 59.808 43.478 10.96 0.00 36.30 4.79
36 37 2.865079 TGGCAAATTTTGGTAGTCCGA 58.135 42.857 10.96 0.00 36.30 4.55
37 38 3.426615 TGGCAAATTTTGGTAGTCCGAT 58.573 40.909 10.96 0.00 36.30 4.18
38 39 3.192422 TGGCAAATTTTGGTAGTCCGATG 59.808 43.478 10.96 0.00 36.30 3.84
39 40 3.428862 GGCAAATTTTGGTAGTCCGATGG 60.429 47.826 10.96 0.00 36.30 3.51
40 41 3.769536 CAAATTTTGGTAGTCCGATGGC 58.230 45.455 0.97 0.00 36.30 4.40
41 42 2.799126 ATTTTGGTAGTCCGATGGCA 57.201 45.000 0.00 0.00 36.30 4.92
42 43 2.799126 TTTTGGTAGTCCGATGGCAT 57.201 45.000 0.00 0.00 36.30 4.40
43 44 2.036958 TTTGGTAGTCCGATGGCATG 57.963 50.000 3.81 0.00 36.30 4.06
44 45 0.908910 TTGGTAGTCCGATGGCATGT 59.091 50.000 3.81 0.00 36.30 3.21
45 46 0.908910 TGGTAGTCCGATGGCATGTT 59.091 50.000 3.81 0.00 36.30 2.71
46 47 1.280710 TGGTAGTCCGATGGCATGTTT 59.719 47.619 3.81 0.00 36.30 2.83
47 48 2.502130 TGGTAGTCCGATGGCATGTTTA 59.498 45.455 3.81 0.00 36.30 2.01
48 49 3.131396 GGTAGTCCGATGGCATGTTTAG 58.869 50.000 3.81 0.00 0.00 1.85
49 50 3.431766 GGTAGTCCGATGGCATGTTTAGT 60.432 47.826 3.81 0.00 0.00 2.24
50 51 2.906354 AGTCCGATGGCATGTTTAGTC 58.094 47.619 3.81 0.00 0.00 2.59
51 52 2.236146 AGTCCGATGGCATGTTTAGTCA 59.764 45.455 3.81 0.00 0.00 3.41
52 53 2.609459 GTCCGATGGCATGTTTAGTCAG 59.391 50.000 3.81 0.00 0.00 3.51
53 54 2.236146 TCCGATGGCATGTTTAGTCAGT 59.764 45.455 3.81 0.00 0.00 3.41
54 55 3.449377 TCCGATGGCATGTTTAGTCAGTA 59.551 43.478 3.81 0.00 0.00 2.74
55 56 3.804325 CCGATGGCATGTTTAGTCAGTAG 59.196 47.826 3.81 0.00 0.00 2.57
56 57 4.433615 CGATGGCATGTTTAGTCAGTAGT 58.566 43.478 3.81 0.00 0.00 2.73
57 58 4.268644 CGATGGCATGTTTAGTCAGTAGTG 59.731 45.833 3.81 0.00 0.00 2.74
58 59 4.882842 TGGCATGTTTAGTCAGTAGTGA 57.117 40.909 0.00 0.00 0.00 3.41
59 60 5.420725 TGGCATGTTTAGTCAGTAGTGAT 57.579 39.130 2.99 0.00 34.36 3.06
60 61 5.178061 TGGCATGTTTAGTCAGTAGTGATG 58.822 41.667 2.99 0.00 34.36 3.07
61 62 4.572389 GGCATGTTTAGTCAGTAGTGATGG 59.428 45.833 2.99 0.00 34.36 3.51
62 63 5.419542 GCATGTTTAGTCAGTAGTGATGGA 58.580 41.667 2.99 0.00 34.36 3.41
63 64 5.521735 GCATGTTTAGTCAGTAGTGATGGAG 59.478 44.000 2.99 0.00 34.36 3.86
64 65 6.634805 CATGTTTAGTCAGTAGTGATGGAGT 58.365 40.000 2.99 0.00 34.36 3.85
65 66 7.630728 GCATGTTTAGTCAGTAGTGATGGAGTA 60.631 40.741 2.99 0.00 34.36 2.59
66 67 7.770366 TGTTTAGTCAGTAGTGATGGAGTAA 57.230 36.000 2.99 0.00 34.36 2.24
67 68 7.600065 TGTTTAGTCAGTAGTGATGGAGTAAC 58.400 38.462 2.99 4.34 34.36 2.50
68 69 6.770746 TTAGTCAGTAGTGATGGAGTAACC 57.229 41.667 2.99 0.00 34.36 2.85
69 70 3.695060 AGTCAGTAGTGATGGAGTAACCG 59.305 47.826 2.99 0.00 42.61 4.44
70 71 3.021695 TCAGTAGTGATGGAGTAACCGG 58.978 50.000 0.00 0.00 42.61 5.28
71 72 3.021695 CAGTAGTGATGGAGTAACCGGA 58.978 50.000 9.46 0.00 42.61 5.14
72 73 3.637229 CAGTAGTGATGGAGTAACCGGAT 59.363 47.826 9.46 0.00 42.61 4.18
73 74 3.637229 AGTAGTGATGGAGTAACCGGATG 59.363 47.826 9.46 0.00 42.61 3.51
74 75 2.747177 AGTGATGGAGTAACCGGATGA 58.253 47.619 9.46 0.00 42.61 2.92
75 76 3.309296 AGTGATGGAGTAACCGGATGAT 58.691 45.455 9.46 0.00 42.61 2.45
76 77 3.070159 AGTGATGGAGTAACCGGATGATG 59.930 47.826 9.46 0.00 42.61 3.07
77 78 3.038280 TGATGGAGTAACCGGATGATGT 58.962 45.455 9.46 0.00 42.61 3.06
78 79 2.979814 TGGAGTAACCGGATGATGTG 57.020 50.000 9.46 0.00 42.61 3.21
79 80 2.184533 TGGAGTAACCGGATGATGTGT 58.815 47.619 9.46 0.00 42.61 3.72
80 81 2.093711 TGGAGTAACCGGATGATGTGTG 60.094 50.000 9.46 0.00 42.61 3.82
81 82 2.093658 GGAGTAACCGGATGATGTGTGT 60.094 50.000 9.46 0.00 0.00 3.72
82 83 2.930040 GAGTAACCGGATGATGTGTGTG 59.070 50.000 9.46 0.00 0.00 3.82
83 84 1.396996 GTAACCGGATGATGTGTGTGC 59.603 52.381 9.46 0.00 0.00 4.57
84 85 0.250684 AACCGGATGATGTGTGTGCA 60.251 50.000 9.46 0.00 0.00 4.57
85 86 0.035152 ACCGGATGATGTGTGTGCAT 60.035 50.000 9.46 0.00 0.00 3.96
86 87 0.659427 CCGGATGATGTGTGTGCATC 59.341 55.000 0.00 0.00 43.97 3.91
87 88 0.302589 CGGATGATGTGTGTGCATCG 59.697 55.000 0.00 0.00 45.98 3.84
88 89 1.655484 GGATGATGTGTGTGCATCGA 58.345 50.000 0.00 0.00 45.98 3.59
89 90 1.328680 GGATGATGTGTGTGCATCGAC 59.671 52.381 0.00 0.00 45.98 4.20
90 91 1.001624 ATGATGTGTGTGCATCGACG 58.998 50.000 0.00 0.00 45.98 5.12
91 92 0.319469 TGATGTGTGTGCATCGACGT 60.319 50.000 0.00 0.00 45.98 4.34
92 93 0.366871 GATGTGTGTGCATCGACGTC 59.633 55.000 5.18 5.18 36.34 4.34
93 94 1.344226 ATGTGTGTGCATCGACGTCG 61.344 55.000 31.30 31.30 41.45 5.12
94 95 2.014554 GTGTGTGCATCGACGTCGT 61.015 57.895 34.40 20.51 40.80 4.34
95 96 1.299544 TGTGTGCATCGACGTCGTT 60.300 52.632 34.40 25.33 40.80 3.85
96 97 1.127817 GTGTGCATCGACGTCGTTG 59.872 57.895 33.68 33.68 40.77 4.10
100 101 4.932050 CATCGACGTCGTTGCATG 57.068 55.556 34.40 25.99 40.80 4.06
101 102 1.344837 CATCGACGTCGTTGCATGG 59.655 57.895 34.40 12.63 40.80 3.66
102 103 1.080093 ATCGACGTCGTTGCATGGT 60.080 52.632 34.40 10.98 40.80 3.55
103 104 0.669318 ATCGACGTCGTTGCATGGTT 60.669 50.000 34.40 9.06 40.80 3.67
104 105 0.876777 TCGACGTCGTTGCATGGTTT 60.877 50.000 34.40 0.00 40.80 3.27
105 106 0.721155 CGACGTCGTTGCATGGTTTG 60.721 55.000 29.08 0.00 34.11 2.93
106 107 0.306533 GACGTCGTTGCATGGTTTGT 59.693 50.000 0.00 0.00 0.00 2.83
107 108 1.527736 GACGTCGTTGCATGGTTTGTA 59.472 47.619 0.00 0.00 0.00 2.41
108 109 2.147958 ACGTCGTTGCATGGTTTGTAT 58.852 42.857 0.00 0.00 0.00 2.29
109 110 2.095969 ACGTCGTTGCATGGTTTGTATG 60.096 45.455 0.00 0.00 0.00 2.39
110 111 2.727607 CGTCGTTGCATGGTTTGTATGG 60.728 50.000 0.00 0.00 0.00 2.74
111 112 2.486203 GTCGTTGCATGGTTTGTATGGA 59.514 45.455 0.00 0.00 0.00 3.41
112 113 3.128589 GTCGTTGCATGGTTTGTATGGAT 59.871 43.478 0.00 0.00 0.00 3.41
113 114 3.761218 TCGTTGCATGGTTTGTATGGATT 59.239 39.130 0.00 0.00 0.00 3.01
114 115 4.219507 TCGTTGCATGGTTTGTATGGATTT 59.780 37.500 0.00 0.00 0.00 2.17
115 116 4.326817 CGTTGCATGGTTTGTATGGATTTG 59.673 41.667 0.00 0.00 0.00 2.32
116 117 5.477510 GTTGCATGGTTTGTATGGATTTGA 58.522 37.500 0.00 0.00 0.00 2.69
117 118 5.327616 TGCATGGTTTGTATGGATTTGAG 57.672 39.130 0.00 0.00 0.00 3.02
118 119 5.015515 TGCATGGTTTGTATGGATTTGAGA 58.984 37.500 0.00 0.00 0.00 3.27
119 120 5.657745 TGCATGGTTTGTATGGATTTGAGAT 59.342 36.000 0.00 0.00 0.00 2.75
120 121 6.832900 TGCATGGTTTGTATGGATTTGAGATA 59.167 34.615 0.00 0.00 0.00 1.98
121 122 7.506599 TGCATGGTTTGTATGGATTTGAGATAT 59.493 33.333 0.00 0.00 0.00 1.63
122 123 7.811236 GCATGGTTTGTATGGATTTGAGATATG 59.189 37.037 0.00 0.00 0.00 1.78
123 124 9.070179 CATGGTTTGTATGGATTTGAGATATGA 57.930 33.333 0.00 0.00 0.00 2.15
124 125 9.818270 ATGGTTTGTATGGATTTGAGATATGAT 57.182 29.630 0.00 0.00 0.00 2.45
139 140 9.813446 TTGAGATATGATAATTGAGATGATCGG 57.187 33.333 0.00 0.00 0.00 4.18
140 141 9.193806 TGAGATATGATAATTGAGATGATCGGA 57.806 33.333 0.00 0.00 0.00 4.55
142 143 9.984190 AGATATGATAATTGAGATGATCGGATG 57.016 33.333 0.00 0.00 0.00 3.51
143 144 6.922247 ATGATAATTGAGATGATCGGATGC 57.078 37.500 0.00 0.00 0.00 3.91
144 145 4.866486 TGATAATTGAGATGATCGGATGCG 59.134 41.667 0.00 0.00 0.00 4.73
145 146 3.391506 AATTGAGATGATCGGATGCGA 57.608 42.857 12.98 12.98 0.00 5.10
146 147 2.888834 TTGAGATGATCGGATGCGAA 57.111 45.000 14.89 0.00 0.00 4.70
147 148 3.391506 TTGAGATGATCGGATGCGAAT 57.608 42.857 14.89 2.96 0.00 3.34
148 149 3.391506 TGAGATGATCGGATGCGAATT 57.608 42.857 14.89 0.00 0.00 2.17
149 150 4.519540 TGAGATGATCGGATGCGAATTA 57.480 40.909 14.89 3.19 0.00 1.40
150 151 4.237724 TGAGATGATCGGATGCGAATTAC 58.762 43.478 14.89 6.29 0.00 1.89
151 152 4.237724 GAGATGATCGGATGCGAATTACA 58.762 43.478 14.89 11.92 0.00 2.41
152 153 4.825422 AGATGATCGGATGCGAATTACAT 58.175 39.130 14.89 15.90 0.00 2.29
153 154 5.240891 AGATGATCGGATGCGAATTACATT 58.759 37.500 14.89 0.00 0.00 2.71
154 155 6.398095 AGATGATCGGATGCGAATTACATTA 58.602 36.000 14.89 0.00 0.00 1.90
155 156 7.044181 AGATGATCGGATGCGAATTACATTAT 58.956 34.615 14.89 0.00 0.00 1.28
156 157 7.550551 AGATGATCGGATGCGAATTACATTATT 59.449 33.333 14.89 0.00 0.00 1.40
157 158 7.433708 TGATCGGATGCGAATTACATTATTT 57.566 32.000 14.89 0.00 0.00 1.40
158 159 7.297391 TGATCGGATGCGAATTACATTATTTG 58.703 34.615 14.89 0.00 0.00 2.32
159 160 6.852858 TCGGATGCGAATTACATTATTTGA 57.147 33.333 6.93 0.00 0.00 2.69
160 161 6.887368 TCGGATGCGAATTACATTATTTGAG 58.113 36.000 6.93 0.00 0.00 3.02
161 162 6.704050 TCGGATGCGAATTACATTATTTGAGA 59.296 34.615 6.93 0.00 0.00 3.27
162 163 7.387673 TCGGATGCGAATTACATTATTTGAGAT 59.612 33.333 6.93 0.00 0.00 2.75
163 164 7.479603 CGGATGCGAATTACATTATTTGAGATG 59.520 37.037 0.00 0.00 0.00 2.90
164 165 8.292448 GGATGCGAATTACATTATTTGAGATGT 58.708 33.333 0.00 0.00 39.62 3.06
165 166 9.110617 GATGCGAATTACATTATTTGAGATGTG 57.889 33.333 0.00 0.00 37.12 3.21
166 167 7.984391 TGCGAATTACATTATTTGAGATGTGT 58.016 30.769 0.00 0.00 37.12 3.72
167 168 8.122330 TGCGAATTACATTATTTGAGATGTGTC 58.878 33.333 0.00 0.00 37.12 3.67
168 169 7.587757 GCGAATTACATTATTTGAGATGTGTCC 59.412 37.037 0.00 0.00 37.12 4.02
169 170 7.793888 CGAATTACATTATTTGAGATGTGTCCG 59.206 37.037 0.00 0.00 37.12 4.79
170 171 6.918892 TTACATTATTTGAGATGTGTCCGG 57.081 37.500 0.00 0.00 37.12 5.14
171 172 4.843728 ACATTATTTGAGATGTGTCCGGT 58.156 39.130 0.00 0.00 35.31 5.28
172 173 4.876107 ACATTATTTGAGATGTGTCCGGTC 59.124 41.667 0.00 0.00 35.31 4.79
173 174 4.545208 TTATTTGAGATGTGTCCGGTCA 57.455 40.909 0.00 0.00 0.00 4.02
174 175 2.455674 TTTGAGATGTGTCCGGTCAG 57.544 50.000 0.19 0.00 0.00 3.51
175 176 0.037326 TTGAGATGTGTCCGGTCAGC 60.037 55.000 0.19 2.99 0.00 4.26
176 177 1.517257 GAGATGTGTCCGGTCAGCG 60.517 63.158 0.19 0.00 0.00 5.18
177 178 2.214181 GAGATGTGTCCGGTCAGCGT 62.214 60.000 0.19 0.00 0.00 5.07
178 179 1.805945 GATGTGTCCGGTCAGCGTC 60.806 63.158 0.19 4.91 0.00 5.19
179 180 3.296709 ATGTGTCCGGTCAGCGTCC 62.297 63.158 0.19 0.00 0.00 4.79
197 198 2.050077 GCAAGGCGTTTGAGTGGC 60.050 61.111 6.06 0.00 39.21 5.01
201 202 2.281484 GGCGTTTGAGTGGCCAGA 60.281 61.111 5.11 0.00 46.13 3.86
202 203 1.675641 GGCGTTTGAGTGGCCAGAT 60.676 57.895 5.11 0.00 46.13 2.90
203 204 1.244019 GGCGTTTGAGTGGCCAGATT 61.244 55.000 5.11 0.00 46.13 2.40
204 205 0.598065 GCGTTTGAGTGGCCAGATTT 59.402 50.000 5.11 0.00 0.00 2.17
205 206 1.666888 GCGTTTGAGTGGCCAGATTTG 60.667 52.381 5.11 0.00 0.00 2.32
206 207 1.608590 CGTTTGAGTGGCCAGATTTGT 59.391 47.619 5.11 0.00 0.00 2.83
207 208 2.350772 CGTTTGAGTGGCCAGATTTGTC 60.351 50.000 5.11 0.00 0.00 3.18
208 209 1.909700 TTGAGTGGCCAGATTTGTCC 58.090 50.000 5.11 0.00 0.00 4.02
209 210 0.770499 TGAGTGGCCAGATTTGTCCA 59.230 50.000 5.11 0.00 0.00 4.02
210 211 1.355381 TGAGTGGCCAGATTTGTCCAT 59.645 47.619 5.11 0.00 0.00 3.41
211 212 2.019984 GAGTGGCCAGATTTGTCCATC 58.980 52.381 5.11 0.00 0.00 3.51
212 213 1.355381 AGTGGCCAGATTTGTCCATCA 59.645 47.619 5.11 0.00 0.00 3.07
213 214 1.474077 GTGGCCAGATTTGTCCATCAC 59.526 52.381 5.11 0.00 0.00 3.06
214 215 0.734889 GGCCAGATTTGTCCATCACG 59.265 55.000 0.00 0.00 0.00 4.35
215 216 1.678728 GGCCAGATTTGTCCATCACGA 60.679 52.381 0.00 0.00 0.00 4.35
216 217 1.398390 GCCAGATTTGTCCATCACGAC 59.602 52.381 0.00 0.00 0.00 4.34
217 218 2.936993 GCCAGATTTGTCCATCACGACT 60.937 50.000 0.00 0.00 33.70 4.18
218 219 3.678806 GCCAGATTTGTCCATCACGACTA 60.679 47.826 0.00 0.00 33.70 2.59
219 220 4.697514 CCAGATTTGTCCATCACGACTAT 58.302 43.478 0.00 0.00 33.70 2.12
220 221 5.739070 GCCAGATTTGTCCATCACGACTATA 60.739 44.000 0.00 0.00 33.70 1.31
221 222 6.459066 CCAGATTTGTCCATCACGACTATAT 58.541 40.000 0.00 0.00 33.70 0.86
222 223 7.602753 CCAGATTTGTCCATCACGACTATATA 58.397 38.462 0.00 0.00 33.70 0.86
223 224 8.253810 CCAGATTTGTCCATCACGACTATATAT 58.746 37.037 0.00 0.00 33.70 0.86
227 228 8.926715 TTTGTCCATCACGACTATATATATGC 57.073 34.615 5.44 0.00 33.70 3.14
228 229 7.881775 TGTCCATCACGACTATATATATGCT 57.118 36.000 5.44 0.00 33.70 3.79
229 230 7.931275 TGTCCATCACGACTATATATATGCTC 58.069 38.462 5.44 0.00 33.70 4.26
230 231 7.775561 TGTCCATCACGACTATATATATGCTCT 59.224 37.037 5.44 0.00 33.70 4.09
231 232 8.286800 GTCCATCACGACTATATATATGCTCTC 58.713 40.741 5.44 0.00 0.00 3.20
232 233 7.993183 TCCATCACGACTATATATATGCTCTCA 59.007 37.037 5.44 0.00 0.00 3.27
233 234 8.073167 CCATCACGACTATATATATGCTCTCAC 58.927 40.741 5.44 0.00 0.00 3.51
234 235 7.555306 TCACGACTATATATATGCTCTCACC 57.445 40.000 5.44 0.00 0.00 4.02
237 238 8.244113 CACGACTATATATATGCTCTCACCAAA 58.756 37.037 5.44 0.00 0.00 3.28
448 468 4.864334 CCTGCCCACGCCATCTCC 62.864 72.222 0.00 0.00 0.00 3.71
460 480 2.443952 ATCTCCGCCGTCCATCCA 60.444 61.111 0.00 0.00 0.00 3.41
466 486 2.047655 GCCGTCCATCCACGAACA 60.048 61.111 0.00 0.00 42.69 3.18
1036 1056 2.570068 CCGACGACGACGAACGAG 60.570 66.667 20.63 14.48 45.77 4.18
1074 1094 1.762222 CTAGGGTTTCGCGCATTCCG 61.762 60.000 8.75 0.00 40.75 4.30
1140 1163 4.222847 CCGTTAGCCCCTCTCGCC 62.223 72.222 0.00 0.00 0.00 5.54
1181 1204 3.917760 GATCCTGGCGAGGTCGGG 61.918 72.222 15.09 0.00 40.76 5.14
1221 1244 1.007580 GCGGTAGCTTAGGTTGCTTC 58.992 55.000 0.00 0.00 41.46 3.86
1262 1298 2.835431 TGTTGCGGGGGTGTTTGG 60.835 61.111 0.00 0.00 0.00 3.28
1335 1373 1.059994 GAATCGCTCGCTTGTGCTG 59.940 57.895 0.00 0.00 36.97 4.41
1338 1376 3.485431 CGCTCGCTTGTGCTGGAG 61.485 66.667 0.00 0.00 36.97 3.86
1343 1381 0.944386 TCGCTTGTGCTGGAGTTTTC 59.056 50.000 0.00 0.00 36.97 2.29
1346 1384 0.961753 CTTGTGCTGGAGTTTTCCCC 59.038 55.000 0.00 0.00 43.33 4.81
1347 1385 0.469144 TTGTGCTGGAGTTTTCCCCC 60.469 55.000 0.00 0.00 43.33 5.40
1382 1421 1.621814 TCGGGAACTCGAGATTGGTTT 59.378 47.619 21.68 0.56 34.82 3.27
1390 1429 1.066430 TCGAGATTGGTTTTCGGGGAG 60.066 52.381 0.00 0.00 35.21 4.30
1394 1433 1.202348 GATTGGTTTTCGGGGAGCTTG 59.798 52.381 0.00 0.00 0.00 4.01
1409 1448 0.951040 GCTTGTGCTTCGTGGTAGCT 60.951 55.000 0.00 0.00 39.38 3.32
1412 1451 1.227999 TGTGCTTCGTGGTAGCTTGC 61.228 55.000 0.00 0.00 39.38 4.01
1432 1471 2.685897 GCTCTGGTCTCAGTAGTCGATT 59.314 50.000 0.00 0.00 41.59 3.34
1441 1480 4.941873 TCTCAGTAGTCGATTGCTTAGTCA 59.058 41.667 7.01 0.00 0.00 3.41
1445 1484 7.194278 TCAGTAGTCGATTGCTTAGTCATTAC 58.806 38.462 0.00 0.00 0.00 1.89
1448 1487 5.109903 AGTCGATTGCTTAGTCATTACCAC 58.890 41.667 0.00 0.00 0.00 4.16
1449 1488 4.270325 GTCGATTGCTTAGTCATTACCACC 59.730 45.833 0.00 0.00 0.00 4.61
1494 1533 0.677731 CTTGCTGAAATGGAGGGCGA 60.678 55.000 0.00 0.00 0.00 5.54
1535 1574 2.405172 GAAGTAGATTCGATTCCCCGC 58.595 52.381 3.75 0.00 0.00 6.13
1550 1589 0.730840 CCCGCCGTGTTCTATTTTCC 59.269 55.000 0.00 0.00 0.00 3.13
1566 1605 4.895668 TTTTCCTTCAGTATGTACGGGT 57.104 40.909 0.00 0.00 37.40 5.28
1592 1631 6.798427 AAGAGTAGCTTCATCCTTGTGATA 57.202 37.500 0.00 0.00 28.17 2.15
1644 1685 7.252612 TCTTGTTCCTTGAGAATGTGGTATA 57.747 36.000 0.00 0.00 36.69 1.47
1648 1689 9.967451 TTGTTCCTTGAGAATGTGGTATAATAA 57.033 29.630 0.00 0.00 36.69 1.40
1743 1785 2.289195 TGTTTGGGGTTCAGCTAGTACG 60.289 50.000 0.00 0.00 0.00 3.67
1752 1794 4.033014 GGTTCAGCTAGTACGATTTTCTGC 59.967 45.833 0.00 0.00 0.00 4.26
1868 1910 5.432645 TGCCGAACTAATATGTGGAATCAA 58.567 37.500 0.00 0.00 0.00 2.57
1884 1926 7.930325 TGTGGAATCAATTTTATCAAGTGCAAA 59.070 29.630 0.00 0.00 0.00 3.68
1906 1949 2.378038 TGCATCCCCTTGCTGTATTTC 58.622 47.619 0.00 0.00 43.18 2.17
1961 2004 2.086054 AGCTAGGTTCTTGTTGCTCG 57.914 50.000 0.00 0.00 0.00 5.03
1969 2012 3.071479 GTTCTTGTTGCTCGGTCCATAA 58.929 45.455 0.00 0.00 0.00 1.90
1982 2025 3.664276 CGGTCCATAAATAGAATTGCGCG 60.664 47.826 0.00 0.00 0.00 6.86
2016 2059 0.404040 CCCCTAAGTTTGCTGTCCCA 59.596 55.000 0.00 0.00 0.00 4.37
2056 2099 4.064491 GCAGTGTGTGCGCGTCTC 62.064 66.667 8.43 1.61 43.99 3.36
2220 2263 6.479006 TGATGGAATAATGTGGAGATGGATC 58.521 40.000 0.00 0.00 0.00 3.36
2330 2377 5.478233 TGTGATACATTTTCCACGCATAC 57.522 39.130 0.00 0.00 32.58 2.39
2411 2642 5.530519 TTACAACTCACATGAAGAATCGC 57.469 39.130 0.00 0.00 0.00 4.58
2501 2733 8.539770 TTTTGCACTCATTGAAGTGTTTTTAA 57.460 26.923 13.89 4.53 46.77 1.52
2703 2935 2.747855 CCTTTCGTGCCTGCCTCC 60.748 66.667 0.00 0.00 0.00 4.30
2704 2936 2.032528 CTTTCGTGCCTGCCTCCA 59.967 61.111 0.00 0.00 0.00 3.86
2705 2937 1.600636 CTTTCGTGCCTGCCTCCAA 60.601 57.895 0.00 0.00 0.00 3.53
2714 2946 0.689623 CCTGCCTCCAACAAGTCTCT 59.310 55.000 0.00 0.00 0.00 3.10
2748 2980 2.971901 TGAAAGGAAAGAAGGACCCC 57.028 50.000 0.00 0.00 0.00 4.95
2820 3052 1.409427 GGGTATCAACTCCCAGAGTCG 59.591 57.143 0.00 0.00 42.59 4.18
2919 3151 1.743995 GGCAAGTCACGCGGGTAAT 60.744 57.895 8.89 0.00 0.00 1.89
2920 3152 1.702491 GGCAAGTCACGCGGGTAATC 61.702 60.000 8.89 0.00 0.00 1.75
2921 3153 1.017177 GCAAGTCACGCGGGTAATCA 61.017 55.000 8.89 0.00 0.00 2.57
3051 3283 0.459585 TGCTTTCCGATCTGGTACGC 60.460 55.000 3.97 4.72 39.52 4.42
3112 3344 5.007430 GTGTCCTGATGCATTAGATTCTGTG 59.993 44.000 19.43 1.57 0.00 3.66
3165 3402 8.240682 CCGAATCAAACACCATGTCTTATTTTA 58.759 33.333 0.00 0.00 0.00 1.52
3166 3403 9.787532 CGAATCAAACACCATGTCTTATTTTAT 57.212 29.630 0.00 0.00 0.00 1.40
3316 3553 6.994496 TCCTGATGCATTAGATTCTTTACCTG 59.006 38.462 19.43 0.00 0.00 4.00
3344 3773 2.618241 TGTGCAAACCTTGTAGCTGAAG 59.382 45.455 0.00 0.00 0.00 3.02
3360 3789 6.088016 AGCTGAAGCAACATCATGTTTTTA 57.912 33.333 0.00 0.00 38.77 1.52
3376 3807 9.851686 TCATGTTTTTATCCTATAGCAGAACAT 57.148 29.630 0.00 2.62 36.09 2.71
3390 3821 3.220110 CAGAACATAGCCATTGCCATCT 58.780 45.455 0.00 0.00 38.69 2.90
3391 3822 4.392047 CAGAACATAGCCATTGCCATCTA 58.608 43.478 0.00 0.00 38.69 1.98
3392 3823 5.008331 CAGAACATAGCCATTGCCATCTAT 58.992 41.667 0.00 0.00 38.69 1.98
3393 3824 6.175471 CAGAACATAGCCATTGCCATCTATA 58.825 40.000 0.00 0.00 38.69 1.31
3394 3825 6.656270 CAGAACATAGCCATTGCCATCTATAA 59.344 38.462 0.00 0.00 38.69 0.98
3395 3826 7.175467 CAGAACATAGCCATTGCCATCTATAAA 59.825 37.037 0.00 0.00 38.69 1.40
3396 3827 7.392673 AGAACATAGCCATTGCCATCTATAAAG 59.607 37.037 0.00 0.00 38.69 1.85
3435 3866 7.147976 AGTTGAAACCATTTCTCATTGCTAAC 58.852 34.615 3.19 0.00 40.32 2.34
3440 3871 4.271049 ACCATTTCTCATTGCTAACGATCG 59.729 41.667 14.88 14.88 0.00 3.69
3450 3881 2.029739 TGCTAACGATCGTTCCTTGTCA 60.030 45.455 34.78 20.36 39.31 3.58
3492 3923 2.709934 AGCTGATGATAATGGCCACTCT 59.290 45.455 8.16 0.00 0.00 3.24
3514 3945 1.327764 CCGAAGTATCAGAAAAGCCGC 59.672 52.381 0.00 0.00 0.00 6.53
3531 3962 2.036098 CAGCACCATGGCCCTTCA 59.964 61.111 13.04 0.00 0.00 3.02
3581 4012 2.359900 CTACATCTGGTCCAAGCCAAC 58.640 52.381 0.00 0.00 38.18 3.77
3587 4018 1.360393 TGGTCCAAGCCAACCCTTCT 61.360 55.000 0.00 0.00 35.25 2.85
3604 4035 0.895530 TCTCCACCGTCATCAAGACC 59.104 55.000 0.00 0.00 44.66 3.85
3623 4091 2.959275 CGATGTAGCGGAGTGTTCC 58.041 57.895 0.00 0.00 40.33 3.62
3630 4098 0.389948 AGCGGAGTGTTCCATTCGTC 60.390 55.000 0.00 0.00 44.26 4.20
3843 4311 3.110178 GTGTTCTCCCGCGTTCCG 61.110 66.667 4.92 0.00 0.00 4.30
3907 4375 3.046497 GCGGGTTTACATGGGTGCG 62.046 63.158 0.00 0.00 0.00 5.34
3913 4381 2.752903 GGTTTACATGGGTGCGAAGATT 59.247 45.455 0.00 0.00 0.00 2.40
3951 4419 1.081175 GCTTTGCAGAAACGGAGGC 60.081 57.895 0.00 0.00 0.00 4.70
4023 4491 7.044798 AGATTAGTGGCAATTGTCTTCTACTC 58.955 38.462 12.01 15.20 0.00 2.59
4034 4502 6.544928 TTGTCTTCTACTCATATGCCTTGA 57.455 37.500 0.00 0.00 0.00 3.02
4109 6276 7.877003 TGTTTTCAATACGATAGCCTGAAAAA 58.123 30.769 9.21 0.45 44.94 1.94
4118 6285 1.260544 AGCCTGAAAAAGATGCCACC 58.739 50.000 0.00 0.00 0.00 4.61
4127 6295 2.664402 AAGATGCCACCTGTTCAAGT 57.336 45.000 0.00 0.00 0.00 3.16
4145 6313 7.335924 TGTTCAAGTTTTGCTTTGTAGTACTCT 59.664 33.333 0.00 0.00 34.69 3.24
4200 6395 1.757118 TCACCTCCTATCGCCTTTGAG 59.243 52.381 0.00 0.00 0.00 3.02
4201 6396 1.482593 CACCTCCTATCGCCTTTGAGT 59.517 52.381 0.00 0.00 0.00 3.41
4202 6397 1.482593 ACCTCCTATCGCCTTTGAGTG 59.517 52.381 0.00 0.00 0.00 3.51
4203 6398 1.576356 CTCCTATCGCCTTTGAGTGC 58.424 55.000 0.00 0.00 0.00 4.40
4232 6427 0.395311 CAGTGTAGACTCGGGGGCTA 60.395 60.000 0.00 0.00 33.70 3.93
4233 6428 0.556747 AGTGTAGACTCGGGGGCTAT 59.443 55.000 0.00 0.00 37.93 2.97
4234 6429 0.960286 GTGTAGACTCGGGGGCTATC 59.040 60.000 0.00 0.00 37.93 2.08
4235 6430 0.554305 TGTAGACTCGGGGGCTATCA 59.446 55.000 0.00 0.00 37.93 2.15
4236 6431 1.063492 TGTAGACTCGGGGGCTATCAA 60.063 52.381 0.00 0.00 37.93 2.57
4237 6432 1.614413 GTAGACTCGGGGGCTATCAAG 59.386 57.143 0.00 0.00 37.93 3.02
4238 6433 0.261991 AGACTCGGGGGCTATCAAGA 59.738 55.000 0.00 0.00 0.00 3.02
4240 6435 1.694696 GACTCGGGGGCTATCAAGAAT 59.305 52.381 0.00 0.00 0.00 2.40
4241 6436 2.897969 GACTCGGGGGCTATCAAGAATA 59.102 50.000 0.00 0.00 0.00 1.75
4287 6493 7.164008 GCACACAGCATTCAAAACAAAATAAAC 59.836 33.333 0.00 0.00 44.79 2.01
4329 6535 7.144000 AGTTGTAGGTTTCAAGTTCTACTACG 58.856 38.462 0.00 0.00 40.57 3.51
4330 6536 6.639632 TGTAGGTTTCAAGTTCTACTACGT 57.360 37.500 0.00 0.00 34.74 3.57
4331 6537 6.672147 TGTAGGTTTCAAGTTCTACTACGTC 58.328 40.000 0.00 0.00 34.74 4.34
4332 6538 6.488006 TGTAGGTTTCAAGTTCTACTACGTCT 59.512 38.462 0.00 0.00 34.74 4.18
4333 6539 5.770417 AGGTTTCAAGTTCTACTACGTCTG 58.230 41.667 0.00 0.00 0.00 3.51
4334 6540 5.301298 AGGTTTCAAGTTCTACTACGTCTGT 59.699 40.000 0.00 0.00 0.00 3.41
4335 6541 6.488006 AGGTTTCAAGTTCTACTACGTCTGTA 59.512 38.462 0.00 0.00 0.00 2.74
4350 6556 6.078202 ACGTCTGTAGAATATCCATGACAG 57.922 41.667 0.00 0.00 36.48 3.51
4351 6557 4.920340 CGTCTGTAGAATATCCATGACAGC 59.080 45.833 0.00 0.00 35.39 4.40
4364 6570 3.798337 CCATGACAGCAAATTATTTCCGC 59.202 43.478 0.00 0.00 0.00 5.54
4373 6579 5.700832 AGCAAATTATTTCCGCGAGATATCA 59.299 36.000 8.23 0.00 0.00 2.15
4377 6583 5.570262 TTATTTCCGCGAGATATCAAACG 57.430 39.130 8.23 8.77 0.00 3.60
4379 6585 2.115348 TCCGCGAGATATCAAACGTC 57.885 50.000 8.23 4.12 0.00 4.34
4410 6617 9.326413 ACATCTACAGAAAAATTAATCGGTAGG 57.674 33.333 20.34 13.06 41.60 3.18
4450 6657 5.228665 AGTAGTCGGAACAAAAGCTAGAAC 58.771 41.667 0.00 0.00 0.00 3.01
4485 6692 7.925043 TTGAAAAAGGAGTGTGTTACAAGTA 57.075 32.000 0.00 0.00 0.00 2.24
4508 6715 3.895232 ATAGGAGCAACTGTCGACAAT 57.105 42.857 20.49 6.72 0.00 2.71
4515 6722 3.120546 AGCAACTGTCGACAATTTGATCG 60.121 43.478 30.18 16.45 39.72 3.69
4518 6726 1.062587 CTGTCGACAATTTGATCGCCC 59.937 52.381 20.49 4.38 38.24 6.13
4524 6732 3.501950 GACAATTTGATCGCCCAAAGAC 58.498 45.455 2.79 0.00 39.13 3.01
4538 6746 3.696051 CCCAAAGACGATCATTTCATGGT 59.304 43.478 0.00 0.00 0.00 3.55
4544 6752 4.881850 AGACGATCATTTCATGGTTTACCC 59.118 41.667 0.00 0.00 34.29 3.69
4585 6793 8.553085 TCAAATCAGATAGTCCTATTTCTCCA 57.447 34.615 0.00 0.00 0.00 3.86
4592 6800 4.429854 AGTCCTATTTCTCCATCTTGCC 57.570 45.455 0.00 0.00 0.00 4.52
4597 6805 2.386661 TTTCTCCATCTTGCCGACTC 57.613 50.000 0.00 0.00 0.00 3.36
4598 6806 1.561643 TTCTCCATCTTGCCGACTCT 58.438 50.000 0.00 0.00 0.00 3.24
4631 6840 3.503748 AGCCAAGTTCGAAAGGATTGAAG 59.496 43.478 14.66 2.65 0.00 3.02
4657 6866 9.584839 GATTGTAGCACATTGTTTTTCATTTTC 57.415 29.630 0.00 0.00 0.00 2.29
4659 6868 8.129161 TGTAGCACATTGTTTTTCATTTTCAG 57.871 30.769 0.00 0.00 0.00 3.02
4660 6869 7.763528 TGTAGCACATTGTTTTTCATTTTCAGT 59.236 29.630 0.00 0.00 0.00 3.41
4661 6870 7.007313 AGCACATTGTTTTTCATTTTCAGTG 57.993 32.000 0.00 0.00 0.00 3.66
4663 6882 6.193761 CACATTGTTTTTCATTTTCAGTGCC 58.806 36.000 0.00 0.00 0.00 5.01
4669 6888 1.927487 TCATTTTCAGTGCCATGGCT 58.073 45.000 35.53 15.87 42.51 4.75
4680 6900 1.202114 TGCCATGGCTTGAAAATCGAC 59.798 47.619 35.53 4.22 42.51 4.20
4717 6937 3.495806 GGCTGGGACCTCATCTTGAATAG 60.496 52.174 0.00 0.00 0.00 1.73
4720 6940 3.711704 TGGGACCTCATCTTGAATAGGAC 59.288 47.826 8.13 3.30 33.16 3.85
4727 6947 6.041865 ACCTCATCTTGAATAGGACATCTGAG 59.958 42.308 8.13 0.00 33.16 3.35
4782 7002 9.679596 CAAAAATAAAGCGCAAAAGATGAATAG 57.320 29.630 11.47 0.00 0.00 1.73
4878 7099 1.522569 CCACTCCACTCCGATTCCC 59.477 63.158 0.00 0.00 0.00 3.97
4909 7133 4.335584 CTCCGCTCGATCTCCGGC 62.336 72.222 0.00 0.00 41.68 6.13
4912 7136 4.335584 CGCTCGATCTCCGGCCTC 62.336 72.222 0.00 0.00 39.14 4.70
4966 7190 0.531200 CGAGGTTCGTTTCTAGGCCT 59.469 55.000 11.78 11.78 34.72 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.539438 TTTGCCATGACACCCCTGTC 60.539 55.000 0.00 0.00 46.34 3.51
4 5 0.114954 ATTTGCCATGACACCCCTGT 59.885 50.000 0.00 0.00 0.00 4.00
5 6 1.269012 AATTTGCCATGACACCCCTG 58.731 50.000 0.00 0.00 0.00 4.45
6 7 2.028561 AAATTTGCCATGACACCCCT 57.971 45.000 0.00 0.00 0.00 4.79
7 8 2.425539 CAAAATTTGCCATGACACCCC 58.574 47.619 0.00 0.00 0.00 4.95
8 9 2.224499 ACCAAAATTTGCCATGACACCC 60.224 45.455 0.00 0.00 0.00 4.61
9 10 3.124578 ACCAAAATTTGCCATGACACC 57.875 42.857 0.00 0.00 0.00 4.16
10 11 4.881920 ACTACCAAAATTTGCCATGACAC 58.118 39.130 0.00 0.00 0.00 3.67
11 12 4.021544 GGACTACCAAAATTTGCCATGACA 60.022 41.667 0.00 0.00 35.97 3.58
12 13 4.494484 GGACTACCAAAATTTGCCATGAC 58.506 43.478 0.00 0.00 35.97 3.06
13 14 3.192422 CGGACTACCAAAATTTGCCATGA 59.808 43.478 0.00 0.00 35.59 3.07
14 15 3.192422 TCGGACTACCAAAATTTGCCATG 59.808 43.478 0.00 0.00 35.59 3.66
15 16 3.426615 TCGGACTACCAAAATTTGCCAT 58.573 40.909 0.00 0.00 35.59 4.40
16 17 2.865079 TCGGACTACCAAAATTTGCCA 58.135 42.857 0.00 0.00 35.59 4.92
17 18 3.428862 CCATCGGACTACCAAAATTTGCC 60.429 47.826 0.00 0.00 35.59 4.52
18 19 3.769536 CCATCGGACTACCAAAATTTGC 58.230 45.455 0.00 0.00 35.59 3.68
19 20 3.192422 TGCCATCGGACTACCAAAATTTG 59.808 43.478 0.00 0.00 35.59 2.32
20 21 3.426615 TGCCATCGGACTACCAAAATTT 58.573 40.909 0.00 0.00 35.59 1.82
21 22 3.080300 TGCCATCGGACTACCAAAATT 57.920 42.857 0.00 0.00 35.59 1.82
22 23 2.799126 TGCCATCGGACTACCAAAAT 57.201 45.000 0.00 0.00 35.59 1.82
23 24 2.290641 ACATGCCATCGGACTACCAAAA 60.291 45.455 0.00 0.00 35.59 2.44
24 25 1.280710 ACATGCCATCGGACTACCAAA 59.719 47.619 0.00 0.00 35.59 3.28
25 26 0.908910 ACATGCCATCGGACTACCAA 59.091 50.000 0.00 0.00 35.59 3.67
26 27 0.908910 AACATGCCATCGGACTACCA 59.091 50.000 0.00 0.00 35.59 3.25
27 28 2.038387 AAACATGCCATCGGACTACC 57.962 50.000 0.00 0.00 0.00 3.18
28 29 3.793559 ACTAAACATGCCATCGGACTAC 58.206 45.455 0.00 0.00 0.00 2.73
29 30 3.449377 TGACTAAACATGCCATCGGACTA 59.551 43.478 0.00 0.00 0.00 2.59
30 31 2.236146 TGACTAAACATGCCATCGGACT 59.764 45.455 0.00 0.00 0.00 3.85
31 32 2.609459 CTGACTAAACATGCCATCGGAC 59.391 50.000 0.00 0.00 0.00 4.79
32 33 2.236146 ACTGACTAAACATGCCATCGGA 59.764 45.455 0.00 0.00 0.00 4.55
33 34 2.632377 ACTGACTAAACATGCCATCGG 58.368 47.619 0.00 0.00 0.00 4.18
34 35 4.268644 CACTACTGACTAAACATGCCATCG 59.731 45.833 0.00 0.00 0.00 3.84
35 36 5.419542 TCACTACTGACTAAACATGCCATC 58.580 41.667 0.00 0.00 0.00 3.51
36 37 5.420725 TCACTACTGACTAAACATGCCAT 57.579 39.130 0.00 0.00 0.00 4.40
37 38 4.882842 TCACTACTGACTAAACATGCCA 57.117 40.909 0.00 0.00 0.00 4.92
38 39 4.572389 CCATCACTACTGACTAAACATGCC 59.428 45.833 0.00 0.00 0.00 4.40
39 40 5.419542 TCCATCACTACTGACTAAACATGC 58.580 41.667 0.00 0.00 0.00 4.06
40 41 6.634805 ACTCCATCACTACTGACTAAACATG 58.365 40.000 0.00 0.00 0.00 3.21
41 42 6.859112 ACTCCATCACTACTGACTAAACAT 57.141 37.500 0.00 0.00 0.00 2.71
42 43 7.309621 GGTTACTCCATCACTACTGACTAAACA 60.310 40.741 0.00 0.00 35.97 2.83
43 44 7.034397 GGTTACTCCATCACTACTGACTAAAC 58.966 42.308 0.00 0.00 35.97 2.01
44 45 6.127814 CGGTTACTCCATCACTACTGACTAAA 60.128 42.308 0.00 0.00 35.57 1.85
45 46 5.356190 CGGTTACTCCATCACTACTGACTAA 59.644 44.000 0.00 0.00 35.57 2.24
46 47 4.880120 CGGTTACTCCATCACTACTGACTA 59.120 45.833 0.00 0.00 35.57 2.59
47 48 3.695060 CGGTTACTCCATCACTACTGACT 59.305 47.826 0.00 0.00 35.57 3.41
48 49 3.181489 CCGGTTACTCCATCACTACTGAC 60.181 52.174 0.00 0.00 35.57 3.51
49 50 3.021695 CCGGTTACTCCATCACTACTGA 58.978 50.000 0.00 0.00 35.57 3.41
50 51 3.021695 TCCGGTTACTCCATCACTACTG 58.978 50.000 0.00 0.00 35.57 2.74
51 52 3.377253 TCCGGTTACTCCATCACTACT 57.623 47.619 0.00 0.00 35.57 2.57
52 53 3.635373 TCATCCGGTTACTCCATCACTAC 59.365 47.826 0.00 0.00 35.57 2.73
53 54 3.905968 TCATCCGGTTACTCCATCACTA 58.094 45.455 0.00 0.00 35.57 2.74
54 55 2.747177 TCATCCGGTTACTCCATCACT 58.253 47.619 0.00 0.00 35.57 3.41
55 56 3.181465 ACATCATCCGGTTACTCCATCAC 60.181 47.826 0.00 0.00 35.57 3.06
56 57 3.038280 ACATCATCCGGTTACTCCATCA 58.962 45.455 0.00 0.00 35.57 3.07
57 58 3.181465 ACACATCATCCGGTTACTCCATC 60.181 47.826 0.00 0.00 35.57 3.51
58 59 2.771943 ACACATCATCCGGTTACTCCAT 59.228 45.455 0.00 0.00 35.57 3.41
59 60 2.093711 CACACATCATCCGGTTACTCCA 60.094 50.000 0.00 0.00 35.57 3.86
60 61 2.093658 ACACACATCATCCGGTTACTCC 60.094 50.000 0.00 0.00 0.00 3.85
61 62 2.930040 CACACACATCATCCGGTTACTC 59.070 50.000 0.00 0.00 0.00 2.59
62 63 2.935238 GCACACACATCATCCGGTTACT 60.935 50.000 0.00 0.00 0.00 2.24
63 64 1.396996 GCACACACATCATCCGGTTAC 59.603 52.381 0.00 0.00 0.00 2.50
64 65 1.002544 TGCACACACATCATCCGGTTA 59.997 47.619 0.00 0.00 0.00 2.85
65 66 0.250684 TGCACACACATCATCCGGTT 60.251 50.000 0.00 0.00 0.00 4.44
66 67 0.035152 ATGCACACACATCATCCGGT 60.035 50.000 0.00 0.00 0.00 5.28
67 68 0.659427 GATGCACACACATCATCCGG 59.341 55.000 0.00 0.00 44.81 5.14
68 69 0.302589 CGATGCACACACATCATCCG 59.697 55.000 5.46 0.00 45.56 4.18
69 70 1.328680 GTCGATGCACACACATCATCC 59.671 52.381 5.46 0.00 45.56 3.51
70 71 1.005662 CGTCGATGCACACACATCATC 60.006 52.381 5.46 0.00 45.56 2.92
71 72 1.001624 CGTCGATGCACACACATCAT 58.998 50.000 5.46 0.00 45.56 2.45
72 73 0.319469 ACGTCGATGCACACACATCA 60.319 50.000 4.06 0.00 45.56 3.07
73 74 0.366871 GACGTCGATGCACACACATC 59.633 55.000 4.06 0.00 42.52 3.06
74 75 1.344226 CGACGTCGATGCACACACAT 61.344 55.000 33.35 0.00 43.02 3.21
75 76 2.014018 CGACGTCGATGCACACACA 61.014 57.895 33.35 0.00 43.02 3.72
76 77 1.545614 AACGACGTCGATGCACACAC 61.546 55.000 41.52 0.00 43.02 3.82
77 78 1.299544 AACGACGTCGATGCACACA 60.300 52.632 41.52 0.00 43.02 3.72
78 79 1.127817 CAACGACGTCGATGCACAC 59.872 57.895 41.52 0.00 43.02 3.82
79 80 3.532993 CAACGACGTCGATGCACA 58.467 55.556 41.52 0.00 43.02 4.57
83 84 1.344837 CCATGCAACGACGTCGATG 59.655 57.895 41.52 37.97 43.60 3.84
84 85 0.669318 AACCATGCAACGACGTCGAT 60.669 50.000 41.52 29.53 43.02 3.59
85 86 0.876777 AAACCATGCAACGACGTCGA 60.877 50.000 41.52 21.79 43.02 4.20
86 87 0.721155 CAAACCATGCAACGACGTCG 60.721 55.000 34.58 34.58 46.33 5.12
87 88 0.306533 ACAAACCATGCAACGACGTC 59.693 50.000 5.18 5.18 0.00 4.34
88 89 1.584175 TACAAACCATGCAACGACGT 58.416 45.000 0.00 0.00 0.00 4.34
89 90 2.504868 CATACAAACCATGCAACGACG 58.495 47.619 0.00 0.00 0.00 5.12
90 91 2.486203 TCCATACAAACCATGCAACGAC 59.514 45.455 0.00 0.00 0.00 4.34
91 92 2.784347 TCCATACAAACCATGCAACGA 58.216 42.857 0.00 0.00 0.00 3.85
92 93 3.781079 ATCCATACAAACCATGCAACG 57.219 42.857 0.00 0.00 0.00 4.10
93 94 5.477510 TCAAATCCATACAAACCATGCAAC 58.522 37.500 0.00 0.00 0.00 4.17
94 95 5.479724 TCTCAAATCCATACAAACCATGCAA 59.520 36.000 0.00 0.00 0.00 4.08
95 96 5.015515 TCTCAAATCCATACAAACCATGCA 58.984 37.500 0.00 0.00 0.00 3.96
96 97 5.581126 TCTCAAATCCATACAAACCATGC 57.419 39.130 0.00 0.00 0.00 4.06
97 98 9.070179 TCATATCTCAAATCCATACAAACCATG 57.930 33.333 0.00 0.00 0.00 3.66
98 99 9.818270 ATCATATCTCAAATCCATACAAACCAT 57.182 29.630 0.00 0.00 0.00 3.55
113 114 9.813446 CCGATCATCTCAATTATCATATCTCAA 57.187 33.333 0.00 0.00 0.00 3.02
114 115 9.193806 TCCGATCATCTCAATTATCATATCTCA 57.806 33.333 0.00 0.00 0.00 3.27
116 117 9.984190 CATCCGATCATCTCAATTATCATATCT 57.016 33.333 0.00 0.00 0.00 1.98
117 118 8.710551 GCATCCGATCATCTCAATTATCATATC 58.289 37.037 0.00 0.00 0.00 1.63
118 119 7.384387 CGCATCCGATCATCTCAATTATCATAT 59.616 37.037 0.00 0.00 36.29 1.78
119 120 6.698766 CGCATCCGATCATCTCAATTATCATA 59.301 38.462 0.00 0.00 36.29 2.15
120 121 5.522824 CGCATCCGATCATCTCAATTATCAT 59.477 40.000 0.00 0.00 36.29 2.45
121 122 4.866486 CGCATCCGATCATCTCAATTATCA 59.134 41.667 0.00 0.00 36.29 2.15
122 123 5.105063 TCGCATCCGATCATCTCAATTATC 58.895 41.667 0.00 0.00 38.82 1.75
123 124 5.077134 TCGCATCCGATCATCTCAATTAT 57.923 39.130 0.00 0.00 38.82 1.28
124 125 4.519540 TCGCATCCGATCATCTCAATTA 57.480 40.909 0.00 0.00 38.82 1.40
125 126 3.391506 TCGCATCCGATCATCTCAATT 57.608 42.857 0.00 0.00 38.82 2.32
126 127 3.391506 TTCGCATCCGATCATCTCAAT 57.608 42.857 0.00 0.00 43.97 2.57
127 128 2.888834 TTCGCATCCGATCATCTCAA 57.111 45.000 0.00 0.00 43.97 3.02
128 129 3.391506 AATTCGCATCCGATCATCTCA 57.608 42.857 0.00 0.00 43.97 3.27
129 130 4.237724 TGTAATTCGCATCCGATCATCTC 58.762 43.478 0.00 0.00 43.97 2.75
130 131 4.257267 TGTAATTCGCATCCGATCATCT 57.743 40.909 0.00 0.00 43.97 2.90
131 132 5.536554 AATGTAATTCGCATCCGATCATC 57.463 39.130 0.00 0.00 43.97 2.92
132 133 7.615582 AATAATGTAATTCGCATCCGATCAT 57.384 32.000 0.00 0.00 43.97 2.45
133 134 7.172361 TCAAATAATGTAATTCGCATCCGATCA 59.828 33.333 0.00 0.00 43.97 2.92
134 135 7.518161 TCAAATAATGTAATTCGCATCCGATC 58.482 34.615 0.00 0.00 43.97 3.69
135 136 7.387673 TCTCAAATAATGTAATTCGCATCCGAT 59.612 33.333 0.00 0.00 43.97 4.18
136 137 6.704050 TCTCAAATAATGTAATTCGCATCCGA 59.296 34.615 0.00 0.00 42.66 4.55
137 138 6.887368 TCTCAAATAATGTAATTCGCATCCG 58.113 36.000 0.00 0.00 37.87 4.18
138 139 8.292448 ACATCTCAAATAATGTAATTCGCATCC 58.708 33.333 0.00 0.00 37.87 3.51
139 140 9.110617 CACATCTCAAATAATGTAATTCGCATC 57.889 33.333 0.00 0.00 37.87 3.91
140 141 8.623903 ACACATCTCAAATAATGTAATTCGCAT 58.376 29.630 0.00 0.00 37.87 4.73
141 142 7.984391 ACACATCTCAAATAATGTAATTCGCA 58.016 30.769 0.00 0.00 37.87 5.10
142 143 7.587757 GGACACATCTCAAATAATGTAATTCGC 59.412 37.037 0.00 0.00 37.87 4.70
143 144 7.793888 CGGACACATCTCAAATAATGTAATTCG 59.206 37.037 0.00 0.00 37.87 3.34
144 145 8.070171 CCGGACACATCTCAAATAATGTAATTC 58.930 37.037 0.00 0.00 37.87 2.17
145 146 7.556275 ACCGGACACATCTCAAATAATGTAATT 59.444 33.333 9.46 0.00 41.28 1.40
146 147 7.054124 ACCGGACACATCTCAAATAATGTAAT 58.946 34.615 9.46 0.00 34.42 1.89
147 148 6.411376 ACCGGACACATCTCAAATAATGTAA 58.589 36.000 9.46 0.00 34.42 2.41
148 149 5.984725 ACCGGACACATCTCAAATAATGTA 58.015 37.500 9.46 0.00 34.42 2.29
149 150 4.843728 ACCGGACACATCTCAAATAATGT 58.156 39.130 9.46 0.00 36.56 2.71
150 151 4.875536 TGACCGGACACATCTCAAATAATG 59.124 41.667 9.46 0.00 0.00 1.90
151 152 5.097742 TGACCGGACACATCTCAAATAAT 57.902 39.130 9.46 0.00 0.00 1.28
152 153 4.503910 CTGACCGGACACATCTCAAATAA 58.496 43.478 9.46 0.00 0.00 1.40
153 154 3.678806 GCTGACCGGACACATCTCAAATA 60.679 47.826 9.46 0.00 0.00 1.40
154 155 2.936993 GCTGACCGGACACATCTCAAAT 60.937 50.000 9.46 0.00 0.00 2.32
155 156 1.608025 GCTGACCGGACACATCTCAAA 60.608 52.381 9.46 0.00 0.00 2.69
156 157 0.037326 GCTGACCGGACACATCTCAA 60.037 55.000 9.46 0.00 0.00 3.02
157 158 1.591703 GCTGACCGGACACATCTCA 59.408 57.895 9.46 0.00 0.00 3.27
158 159 1.517257 CGCTGACCGGACACATCTC 60.517 63.158 9.46 0.00 0.00 2.75
159 160 2.214181 GACGCTGACCGGACACATCT 62.214 60.000 9.46 0.00 42.52 2.90
160 161 1.805945 GACGCTGACCGGACACATC 60.806 63.158 9.46 0.00 42.52 3.06
161 162 2.261671 GACGCTGACCGGACACAT 59.738 61.111 9.46 0.00 42.52 3.21
162 163 3.986006 GGACGCTGACCGGACACA 61.986 66.667 9.46 4.37 42.52 3.72
180 181 2.050077 GCCACTCAAACGCCTTGC 60.050 61.111 0.00 0.00 34.76 4.01
181 182 2.133742 CTGGCCACTCAAACGCCTTG 62.134 60.000 0.00 0.00 43.42 3.61
182 183 1.898574 CTGGCCACTCAAACGCCTT 60.899 57.895 0.00 0.00 43.42 4.35
183 184 2.129555 ATCTGGCCACTCAAACGCCT 62.130 55.000 0.00 0.00 43.42 5.52
184 185 1.244019 AATCTGGCCACTCAAACGCC 61.244 55.000 0.00 0.00 43.32 5.68
185 186 0.598065 AAATCTGGCCACTCAAACGC 59.402 50.000 0.00 0.00 0.00 4.84
186 187 1.608590 ACAAATCTGGCCACTCAAACG 59.391 47.619 0.00 0.00 0.00 3.60
187 188 3.288809 GACAAATCTGGCCACTCAAAC 57.711 47.619 0.00 0.00 0.00 2.93
196 197 1.398390 GTCGTGATGGACAAATCTGGC 59.602 52.381 0.00 0.00 36.91 4.85
197 198 2.977914 AGTCGTGATGGACAAATCTGG 58.022 47.619 0.00 0.00 39.42 3.86
201 202 9.534565 GCATATATATAGTCGTGATGGACAAAT 57.465 33.333 0.00 0.00 39.42 2.32
202 203 8.749354 AGCATATATATAGTCGTGATGGACAAA 58.251 33.333 0.00 0.00 39.42 2.83
203 204 8.293699 AGCATATATATAGTCGTGATGGACAA 57.706 34.615 0.00 0.00 39.42 3.18
204 205 7.775561 AGAGCATATATATAGTCGTGATGGACA 59.224 37.037 0.00 0.00 39.42 4.02
205 206 8.160521 AGAGCATATATATAGTCGTGATGGAC 57.839 38.462 0.00 0.00 37.19 4.02
206 207 7.993183 TGAGAGCATATATATAGTCGTGATGGA 59.007 37.037 0.00 0.00 0.00 3.41
207 208 8.073167 GTGAGAGCATATATATAGTCGTGATGG 58.927 40.741 0.00 0.00 0.00 3.51
208 209 8.073167 GGTGAGAGCATATATATAGTCGTGATG 58.927 40.741 0.00 0.00 0.00 3.07
209 210 7.775561 TGGTGAGAGCATATATATAGTCGTGAT 59.224 37.037 0.00 0.00 0.00 3.06
210 211 7.110155 TGGTGAGAGCATATATATAGTCGTGA 58.890 38.462 0.00 0.00 0.00 4.35
211 212 7.321745 TGGTGAGAGCATATATATAGTCGTG 57.678 40.000 0.00 0.00 0.00 4.35
212 213 7.939784 TTGGTGAGAGCATATATATAGTCGT 57.060 36.000 0.00 0.00 0.00 4.34
213 214 9.639601 TTTTTGGTGAGAGCATATATATAGTCG 57.360 33.333 0.00 0.00 0.00 4.18
243 244 4.816385 CAGGTTCTGATATTTACCGCATGT 59.184 41.667 0.00 0.00 35.80 3.21
368 377 1.801512 GGAATGGCAGCGCGTTTTC 60.802 57.895 8.43 1.86 0.00 2.29
448 468 3.186047 GTTCGTGGATGGACGGCG 61.186 66.667 4.80 4.80 39.88 6.46
456 476 2.047274 CCGGTGCTGTTCGTGGAT 60.047 61.111 0.00 0.00 0.00 3.41
460 480 2.742372 GATGCCGGTGCTGTTCGT 60.742 61.111 1.90 0.00 38.71 3.85
487 507 4.747529 GACGTGGTGGGGGTACGC 62.748 72.222 0.00 0.29 41.19 4.42
530 550 2.069430 GGAAGCCAGGAGGAGGAGG 61.069 68.421 0.00 0.00 36.89 4.30
531 551 2.069430 GGGAAGCCAGGAGGAGGAG 61.069 68.421 0.00 0.00 36.89 3.69
532 552 2.041265 GGGAAGCCAGGAGGAGGA 59.959 66.667 0.00 0.00 36.89 3.71
990 1010 4.821589 CTTCCGTCGGGCTGGAGC 62.822 72.222 12.29 0.00 35.26 4.70
991 1011 4.821589 GCTTCCGTCGGGCTGGAG 62.822 72.222 12.29 3.58 35.26 3.86
1088 1111 3.490759 GTACCTCGACGCCGACGA 61.491 66.667 11.53 11.53 43.93 4.20
1121 1144 4.222847 CGAGAGGGGCTAACGGGC 62.223 72.222 0.00 0.00 40.05 6.13
1126 1149 3.458163 CACGGCGAGAGGGGCTAA 61.458 66.667 16.62 0.00 0.00 3.09
1140 1163 3.411351 CGAACGGGAGGCAACACG 61.411 66.667 4.94 4.94 41.41 4.49
1169 1192 4.467084 GATTGCCCGACCTCGCCA 62.467 66.667 0.00 0.00 38.18 5.69
1233 1268 0.883833 CCGCAACAGCAGGAAAGAAT 59.116 50.000 0.00 0.00 0.00 2.40
1236 1271 2.629656 CCCCGCAACAGCAGGAAAG 61.630 63.158 0.00 0.00 0.00 2.62
1262 1298 1.749258 GAACCCCACCGAAGCATCC 60.749 63.158 0.00 0.00 0.00 3.51
1390 1429 0.951040 AGCTACCACGAAGCACAAGC 60.951 55.000 0.00 0.00 42.62 4.01
1394 1433 0.951040 AGCAAGCTACCACGAAGCAC 60.951 55.000 0.00 0.00 42.62 4.40
1409 1448 1.813178 CGACTACTGAGACCAGAGCAA 59.187 52.381 0.00 0.00 43.02 3.91
1412 1451 3.488384 GCAATCGACTACTGAGACCAGAG 60.488 52.174 0.00 0.00 43.02 3.35
1432 1471 2.238646 CCCAGGTGGTAATGACTAAGCA 59.761 50.000 0.00 0.00 0.00 3.91
1441 1480 1.208776 GAAGTACGCCCAGGTGGTAAT 59.791 52.381 1.72 0.00 36.04 1.89
1445 1484 2.267961 GGAAGTACGCCCAGGTGG 59.732 66.667 1.72 0.00 37.09 4.61
1448 1487 4.157120 CCGGGAAGTACGCCCAGG 62.157 72.222 21.84 19.03 46.36 4.45
1449 1488 4.832608 GCCGGGAAGTACGCCCAG 62.833 72.222 21.84 14.30 46.36 4.45
1494 1533 0.409092 TGATGCCATTCAACCCACCT 59.591 50.000 0.00 0.00 0.00 4.00
1535 1574 6.594159 ACATACTGAAGGAAAATAGAACACGG 59.406 38.462 0.00 0.00 0.00 4.94
1550 1589 5.589452 ACTCTTAGACCCGTACATACTGAAG 59.411 44.000 0.00 0.00 0.00 3.02
1566 1605 5.952347 TCACAAGGATGAAGCTACTCTTAGA 59.048 40.000 0.00 0.00 34.56 2.10
1592 1631 5.046014 ACCATTAATCTCACAGCAAGACTCT 60.046 40.000 0.00 0.00 0.00 3.24
1644 1685 4.929146 ACCAGGAAGCTACAACCTTATT 57.071 40.909 0.00 0.00 31.06 1.40
1648 1689 4.717279 TTTAACCAGGAAGCTACAACCT 57.283 40.909 0.00 0.00 34.02 3.50
1743 1785 4.795308 GCAGGAATAGCATGGCAGAAAATC 60.795 45.833 0.00 0.00 0.00 2.17
1752 1794 1.202782 AGCAGAGCAGGAATAGCATGG 60.203 52.381 0.00 0.00 0.00 3.66
1961 2004 3.810373 CGCGCAATTCTATTTATGGACC 58.190 45.455 8.75 0.00 0.00 4.46
1969 2012 0.311790 CATGGGCGCGCAATTCTATT 59.688 50.000 34.42 10.13 0.00 1.73
1992 2035 2.225727 GACAGCAAACTTAGGGGTTTCG 59.774 50.000 0.00 0.00 37.32 3.46
2016 2059 8.998277 TGCTAGATCAGAACCTACTTACTTAT 57.002 34.615 0.00 0.00 0.00 1.73
2049 2092 1.215244 ATGCATCAATCAGAGACGCG 58.785 50.000 3.53 3.53 0.00 6.01
2052 2095 4.348863 AGGGTATGCATCAATCAGAGAC 57.651 45.455 0.19 0.00 0.00 3.36
2056 2099 4.630644 AGGTAGGGTATGCATCAATCAG 57.369 45.455 0.19 0.00 0.00 2.90
2233 2276 8.196771 GTGCAAAATGGTATGAATTATTCAGGA 58.803 33.333 13.29 1.43 43.98 3.86
2234 2277 8.199449 AGTGCAAAATGGTATGAATTATTCAGG 58.801 33.333 13.29 0.00 43.98 3.86
2244 2287 6.209192 ACTTTGATGAGTGCAAAATGGTATGA 59.791 34.615 0.00 0.00 35.09 2.15
2330 2377 5.103000 GCCACAATACAGTACAGAGTACAG 58.897 45.833 9.68 4.41 0.00 2.74
2392 2439 2.743664 TGGCGATTCTTCATGTGAGTTG 59.256 45.455 0.00 0.00 0.00 3.16
2454 2685 4.192317 AGGGAATGCGTATTCAGAGAAAC 58.808 43.478 24.64 7.94 43.62 2.78
2467 2698 0.597568 TGAGTGCAAAAGGGAATGCG 59.402 50.000 0.00 0.00 45.47 4.73
2579 2811 0.592637 TGCAAACAGCCATGAACTCG 59.407 50.000 0.00 0.00 44.83 4.18
2703 2935 1.939934 TCCGCAAACAGAGACTTGTTG 59.060 47.619 4.48 0.00 40.24 3.33
2704 2936 2.325583 TCCGCAAACAGAGACTTGTT 57.674 45.000 0.00 0.00 42.82 2.83
2705 2937 2.325583 TTCCGCAAACAGAGACTTGT 57.674 45.000 0.00 0.00 0.00 3.16
2714 2946 2.481104 CCTTTCAAGCTTTCCGCAAACA 60.481 45.455 0.00 0.00 42.61 2.83
2748 2980 4.095632 TCAGTCTCATCTACTTGCTTCTCG 59.904 45.833 0.00 0.00 0.00 4.04
2820 3052 6.187125 TCAGCATAGTCATCAAAAGAAAGC 57.813 37.500 0.00 0.00 0.00 3.51
2919 3151 1.141665 CACCACGGCGAGATGATGA 59.858 57.895 16.62 0.00 0.00 2.92
2920 3152 1.884464 CCACCACGGCGAGATGATG 60.884 63.158 16.62 0.00 0.00 3.07
2921 3153 1.613317 TTCCACCACGGCGAGATGAT 61.613 55.000 16.62 0.00 33.14 2.45
3051 3283 5.455849 CAGTGTACTGGATACGAGAATTTCG 59.544 44.000 4.10 8.01 45.97 3.46
3112 3344 1.068264 GGCTTGCACAGAAAACTAGGC 60.068 52.381 0.00 0.00 0.00 3.93
3165 3402 4.321527 GCTGTGCTTTGGCTAGAGAAAAAT 60.322 41.667 0.00 0.00 39.59 1.82
3166 3403 3.004734 GCTGTGCTTTGGCTAGAGAAAAA 59.995 43.478 0.00 0.00 39.59 1.94
3167 3404 2.554032 GCTGTGCTTTGGCTAGAGAAAA 59.446 45.455 0.00 0.00 39.59 2.29
3168 3405 2.154462 GCTGTGCTTTGGCTAGAGAAA 58.846 47.619 0.00 0.00 39.59 2.52
3169 3406 1.611673 GGCTGTGCTTTGGCTAGAGAA 60.612 52.381 0.00 0.00 39.59 2.87
3316 3553 4.379499 GCTACAAGGTTTGCACATAAGACC 60.379 45.833 0.00 0.00 0.00 3.85
3344 3773 8.352201 TGCTATAGGATAAAAACATGATGTTGC 58.648 33.333 12.09 6.72 40.14 4.17
3360 3789 6.413052 CAATGGCTATGTTCTGCTATAGGAT 58.587 40.000 1.04 0.00 30.35 3.24
3376 3807 5.940617 ACACTTTATAGATGGCAATGGCTA 58.059 37.500 8.59 0.00 40.87 3.93
3393 3824 9.744468 GGTTTCAACTAATGATGTTTACACTTT 57.256 29.630 0.00 0.00 38.03 2.66
3394 3825 8.908903 TGGTTTCAACTAATGATGTTTACACTT 58.091 29.630 0.00 0.00 38.03 3.16
3395 3826 8.458573 TGGTTTCAACTAATGATGTTTACACT 57.541 30.769 0.00 0.00 38.03 3.55
3396 3827 9.691362 AATGGTTTCAACTAATGATGTTTACAC 57.309 29.630 0.00 0.00 38.03 2.90
3435 3866 3.318017 AGAGTTTGACAAGGAACGATCG 58.682 45.455 14.88 14.88 0.00 3.69
3486 3917 1.751351 TCTGATACTTCGGCAGAGTGG 59.249 52.381 0.00 0.00 34.02 4.00
3492 3923 2.356135 GGCTTTTCTGATACTTCGGCA 58.644 47.619 0.00 0.00 0.00 5.69
3514 3945 1.380785 ATGAAGGGCCATGGTGCTG 60.381 57.895 14.67 0.00 0.00 4.41
3531 3962 0.035881 CTCATGCCGCCTATGTGGAT 59.964 55.000 1.26 0.00 45.51 3.41
3581 4012 0.613260 TTGATGACGGTGGAGAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
3587 4018 1.884075 CGGGTCTTGATGACGGTGGA 61.884 60.000 0.00 0.00 46.24 4.02
3623 4091 2.712077 GCTTTTGGCACGACGAATG 58.288 52.632 0.00 0.00 41.35 2.67
3843 4311 2.937959 ATCTGTCTCCCTCCCCGCTC 62.938 65.000 0.00 0.00 0.00 5.03
3852 4320 0.755686 AGGCGAATGATCTGTCTCCC 59.244 55.000 0.00 0.00 0.00 4.30
3907 4375 5.629079 ACCAACTGAAATCGGAAATCTTC 57.371 39.130 0.00 0.00 0.00 2.87
3913 4381 2.034053 GCACAACCAACTGAAATCGGAA 59.966 45.455 0.00 0.00 0.00 4.30
4023 4491 4.093998 GCCGAACTCATATCAAGGCATATG 59.906 45.833 0.00 0.00 42.37 1.78
4034 4502 0.178767 TGCAGCAGCCGAACTCATAT 59.821 50.000 0.00 0.00 41.13 1.78
4055 4523 2.038557 ACAGCTACCACTTGTGGGTTAG 59.961 50.000 21.98 15.95 39.85 2.34
4059 4527 1.676014 GCTACAGCTACCACTTGTGGG 60.676 57.143 21.98 7.99 38.21 4.61
4099 6266 1.203100 AGGTGGCATCTTTTTCAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
4109 6276 2.664402 AACTTGAACAGGTGGCATCT 57.336 45.000 0.00 0.00 0.00 2.90
4118 6285 7.472543 AGTACTACAAAGCAAAACTTGAACAG 58.527 34.615 0.00 0.00 39.09 3.16
4127 6295 8.188139 CCTTTTGAAGAGTACTACAAAGCAAAA 58.812 33.333 16.26 14.68 34.54 2.44
4145 6313 1.606668 AGCAACGATTCGCCTTTTGAA 59.393 42.857 5.86 0.00 0.00 2.69
4200 6395 4.318021 CACTGCACTGCACCGCAC 62.318 66.667 0.00 0.00 33.79 5.34
4201 6396 3.453070 TACACTGCACTGCACCGCA 62.453 57.895 0.00 5.25 33.79 5.69
4202 6397 2.664851 TACACTGCACTGCACCGC 60.665 61.111 0.00 0.00 33.79 5.68
4203 6398 1.006220 TCTACACTGCACTGCACCG 60.006 57.895 0.00 0.00 33.79 4.94
4204 6399 0.034059 AGTCTACACTGCACTGCACC 59.966 55.000 0.00 0.00 33.79 5.01
4232 6427 6.438620 AGGGCCTTTTGAGATTATTCTTGAT 58.561 36.000 0.00 0.00 30.30 2.57
4233 6428 5.831103 AGGGCCTTTTGAGATTATTCTTGA 58.169 37.500 0.00 0.00 30.30 3.02
4234 6429 6.379417 AGAAGGGCCTTTTGAGATTATTCTTG 59.621 38.462 21.92 0.00 30.30 3.02
4235 6430 6.497640 AGAAGGGCCTTTTGAGATTATTCTT 58.502 36.000 21.92 0.00 30.30 2.52
4236 6431 6.084749 AGAAGGGCCTTTTGAGATTATTCT 57.915 37.500 21.92 5.11 33.88 2.40
4237 6432 6.567959 CAAGAAGGGCCTTTTGAGATTATTC 58.432 40.000 21.92 2.48 0.00 1.75
4238 6433 5.105187 GCAAGAAGGGCCTTTTGAGATTATT 60.105 40.000 29.25 8.11 0.00 1.40
4240 6435 3.763897 GCAAGAAGGGCCTTTTGAGATTA 59.236 43.478 29.25 0.00 0.00 1.75
4241 6436 2.564504 GCAAGAAGGGCCTTTTGAGATT 59.435 45.455 29.25 14.60 0.00 2.40
4287 6493 8.194769 ACCTACAACTTCAAATAGTTTTTGTGG 58.805 33.333 6.04 3.72 36.24 4.17
4295 6501 8.747538 ACTTGAAACCTACAACTTCAAATAGT 57.252 30.769 0.00 0.00 38.30 2.12
4329 6535 5.847304 TGCTGTCATGGATATTCTACAGAC 58.153 41.667 12.99 7.20 37.18 3.51
4330 6536 6.484364 TTGCTGTCATGGATATTCTACAGA 57.516 37.500 12.99 0.00 37.18 3.41
4331 6537 7.741027 ATTTGCTGTCATGGATATTCTACAG 57.259 36.000 0.00 0.00 37.87 2.74
4332 6538 9.797642 ATAATTTGCTGTCATGGATATTCTACA 57.202 29.630 0.00 0.00 0.00 2.74
4336 6542 9.415544 GGAAATAATTTGCTGTCATGGATATTC 57.584 33.333 0.00 0.00 0.00 1.75
4337 6543 8.084073 CGGAAATAATTTGCTGTCATGGATATT 58.916 33.333 0.00 0.00 0.00 1.28
4338 6544 7.596494 CGGAAATAATTTGCTGTCATGGATAT 58.404 34.615 0.00 0.00 0.00 1.63
4341 6547 4.439974 GCGGAAATAATTTGCTGTCATGGA 60.440 41.667 0.00 0.00 0.00 3.41
4343 6549 3.483196 CGCGGAAATAATTTGCTGTCATG 59.517 43.478 0.00 0.00 0.00 3.07
4344 6550 3.376859 TCGCGGAAATAATTTGCTGTCAT 59.623 39.130 6.13 0.00 0.00 3.06
4346 6552 3.063452 TCTCGCGGAAATAATTTGCTGTC 59.937 43.478 6.13 0.00 0.00 3.51
4347 6553 3.006940 TCTCGCGGAAATAATTTGCTGT 58.993 40.909 6.13 0.00 0.00 4.40
4348 6554 3.673746 TCTCGCGGAAATAATTTGCTG 57.326 42.857 6.13 0.00 0.00 4.41
4349 6555 5.700832 TGATATCTCGCGGAAATAATTTGCT 59.299 36.000 6.13 0.00 0.00 3.91
4350 6556 5.927030 TGATATCTCGCGGAAATAATTTGC 58.073 37.500 6.13 0.00 0.00 3.68
4351 6557 7.058354 CGTTTGATATCTCGCGGAAATAATTTG 59.942 37.037 6.13 0.00 0.00 2.32
4361 6567 0.770590 CGACGTTTGATATCTCGCGG 59.229 55.000 6.13 0.00 0.00 6.46
4364 6570 4.829808 TGTCTACGACGTTTGATATCTCG 58.170 43.478 5.50 6.99 34.95 4.04
4385 6591 8.283291 GCCTACCGATTAATTTTTCTGTAGATG 58.717 37.037 14.82 6.05 33.83 2.90
4421 6628 6.465084 AGCTTTTGTTCCGACTACTCTATTT 58.535 36.000 0.00 0.00 0.00 1.40
4423 6630 5.662674 AGCTTTTGTTCCGACTACTCTAT 57.337 39.130 0.00 0.00 0.00 1.98
4424 6631 5.942236 TCTAGCTTTTGTTCCGACTACTCTA 59.058 40.000 0.00 0.00 0.00 2.43
4425 6632 4.765856 TCTAGCTTTTGTTCCGACTACTCT 59.234 41.667 0.00 0.00 0.00 3.24
4427 6634 5.010820 AGTTCTAGCTTTTGTTCCGACTACT 59.989 40.000 0.00 0.00 0.00 2.57
4428 6635 5.228665 AGTTCTAGCTTTTGTTCCGACTAC 58.771 41.667 0.00 0.00 0.00 2.73
4429 6636 5.464030 AGTTCTAGCTTTTGTTCCGACTA 57.536 39.130 0.00 0.00 0.00 2.59
4430 6637 4.338379 AGTTCTAGCTTTTGTTCCGACT 57.662 40.909 0.00 0.00 0.00 4.18
4431 6638 4.510340 TGAAGTTCTAGCTTTTGTTCCGAC 59.490 41.667 4.17 0.00 0.00 4.79
4450 6657 9.403110 CACACTCCTTTTTCAAATTATCTGAAG 57.597 33.333 0.00 0.00 34.41 3.02
4485 6692 5.339008 TTGTCGACAGTTGCTCCTATTAT 57.661 39.130 19.11 0.00 0.00 1.28
4508 6715 2.107950 ATCGTCTTTGGGCGATCAAA 57.892 45.000 0.00 0.00 43.27 2.69
4538 6746 8.848474 TTGATTTGTCTTTGTTTTTGGGTAAA 57.152 26.923 0.00 0.00 0.00 2.01
4549 6757 8.734386 GGACTATCTGATTTGATTTGTCTTTGT 58.266 33.333 0.00 0.00 33.50 2.83
4550 6758 8.954350 AGGACTATCTGATTTGATTTGTCTTTG 58.046 33.333 0.00 0.00 33.50 2.77
4585 6793 0.107945 GGAAGCAGAGTCGGCAAGAT 60.108 55.000 17.72 0.56 0.00 2.40
4592 6800 1.153939 CTCGGTGGAAGCAGAGTCG 60.154 63.158 0.00 0.00 32.91 4.18
4597 6805 2.032528 TTGGCTCGGTGGAAGCAG 59.967 61.111 0.00 0.00 0.00 4.24
4598 6806 2.032528 CTTGGCTCGGTGGAAGCA 59.967 61.111 0.00 0.00 0.00 3.91
4631 6840 9.584839 GAAAATGAAAAACAATGTGCTACAATC 57.415 29.630 0.00 0.00 0.00 2.67
4657 6866 2.613691 GATTTTCAAGCCATGGCACTG 58.386 47.619 37.18 30.67 44.88 3.66
4659 6868 1.202114 TCGATTTTCAAGCCATGGCAC 59.798 47.619 37.18 10.61 44.88 5.01
4660 6869 1.202114 GTCGATTTTCAAGCCATGGCA 59.798 47.619 37.18 17.20 44.88 4.92
4661 6870 1.202114 TGTCGATTTTCAAGCCATGGC 59.798 47.619 30.12 30.12 42.33 4.40
4663 6882 4.263677 CGATTTGTCGATTTTCAAGCCATG 59.736 41.667 0.00 0.00 34.64 3.66
4669 6888 2.817258 AGGCCGATTTGTCGATTTTCAA 59.183 40.909 0.00 0.00 34.64 2.69
4717 6937 0.985490 AAGGCCCTCCTCAGATGTCC 60.985 60.000 0.00 0.00 43.40 4.02
4720 6940 0.758123 GAGAAGGCCCTCCTCAGATG 59.242 60.000 0.00 0.00 43.40 2.90
4727 6947 3.254024 TTGTGCGAGAAGGCCCTCC 62.254 63.158 0.00 0.00 0.00 4.30
4782 7002 4.778143 AGGTTGCGGCCACGGATC 62.778 66.667 2.24 0.00 41.08 3.36
4825 7045 2.231721 AGGAGCTCGTAGTTCTGTTTCC 59.768 50.000 7.25 0.00 0.00 3.13
4897 7121 3.665226 CGGAGGCCGGAGATCGAG 61.665 72.222 5.05 0.00 44.15 4.04
4924 7148 4.447342 AATGCCGGGAGCTTGGGG 62.447 66.667 2.18 0.00 44.23 4.96
4966 7190 2.606751 TTGGGGGAAATTAAGCGGAA 57.393 45.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.