Multiple sequence alignment - TraesCS6A01G100300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G100300 chr6A 100.000 7373 0 0 1 7373 67531279 67538651 0.000000e+00 13616.0
1 TraesCS6A01G100300 chr6A 83.634 1387 201 16 5083 6451 67515135 67516513 0.000000e+00 1280.0
2 TraesCS6A01G100300 chr6A 100.000 549 0 0 7660 8208 67538938 67539486 0.000000e+00 1014.0
3 TraesCS6A01G100300 chr6A 82.658 963 121 36 1590 2525 510795462 510794519 0.000000e+00 811.0
4 TraesCS6A01G100300 chr6A 87.027 370 48 0 6846 7215 67517420 67517789 1.270000e-112 418.0
5 TraesCS6A01G100300 chr6A 93.841 276 17 0 7884 8159 67638454 67638729 4.580000e-112 416.0
6 TraesCS6A01G100300 chr6A 81.151 504 77 17 3663 4158 67486845 67487338 9.990000e-104 388.0
7 TraesCS6A01G100300 chr6A 86.994 346 28 11 1011 1352 67484521 67484853 2.800000e-99 374.0
8 TraesCS6A01G100300 chr6A 86.585 82 11 0 1440 1521 67484967 67485048 3.150000e-14 91.6
9 TraesCS6A01G100300 chr6A 100.000 39 0 0 6521 6559 61004908 61004870 1.140000e-08 73.1
10 TraesCS6A01G100300 chr6A 92.157 51 3 1 6510 6559 507116978 507116928 4.110000e-08 71.3
11 TraesCS6A01G100300 chr6B 92.992 4880 210 45 2590 7373 123840234 123845077 0.000000e+00 6996.0
12 TraesCS6A01G100300 chr6B 89.797 2019 147 32 540 2525 123838061 123840053 0.000000e+00 2532.0
13 TraesCS6A01G100300 chr6B 85.714 1379 181 14 5083 6451 123834087 123835459 0.000000e+00 1441.0
14 TraesCS6A01G100300 chr6B 89.071 549 45 8 1 544 123837481 123838019 0.000000e+00 667.0
15 TraesCS6A01G100300 chr6B 76.445 1384 234 69 3663 5001 123832715 123834051 0.000000e+00 665.0
16 TraesCS6A01G100300 chr6B 85.549 346 33 11 1011 1352 123829870 123830202 6.100000e-91 346.0
17 TraesCS6A01G100300 chr6B 85.119 336 19 11 7884 8208 352088921 352088606 1.720000e-81 315.0
18 TraesCS6A01G100300 chr6B 93.038 158 11 0 7663 7820 123886661 123886818 1.780000e-56 231.0
19 TraesCS6A01G100300 chr6B 80.836 287 38 11 3220 3504 123830607 123830878 8.350000e-50 209.0
20 TraesCS6A01G100300 chr6B 91.463 82 7 0 1440 1521 123830333 123830414 6.730000e-21 113.0
21 TraesCS6A01G100300 chr6D 95.168 2318 69 22 5075 7372 47654703 47652409 0.000000e+00 3620.0
22 TraesCS6A01G100300 chr6D 94.207 1450 62 12 3592 5035 47656124 47654691 0.000000e+00 2193.0
23 TraesCS6A01G100300 chr6D 91.225 1527 88 31 580 2102 47659417 47657933 0.000000e+00 2036.0
24 TraesCS6A01G100300 chr6D 91.317 1048 61 10 2590 3608 47657184 47656138 0.000000e+00 1404.0
25 TraesCS6A01G100300 chr6D 85.714 868 116 5 5591 6451 47662484 47661618 0.000000e+00 909.0
26 TraesCS6A01G100300 chr6D 76.310 1355 228 62 3663 4972 47665582 47664276 8.980000e-179 638.0
27 TraesCS6A01G100300 chr6D 87.978 549 46 13 1 545 47660053 47659521 1.500000e-176 630.0
28 TraesCS6A01G100300 chr6D 91.196 443 39 0 5089 5531 47664025 47663583 3.280000e-168 603.0
29 TraesCS6A01G100300 chr6D 86.880 343 31 9 1011 1352 47667874 47667545 1.010000e-98 372.0
30 TraesCS6A01G100300 chr6D 84.984 313 37 9 3220 3528 47667158 47666852 8.000000e-80 309.0
31 TraesCS6A01G100300 chr6D 93.750 192 6 1 7699 7884 47651996 47651805 4.850000e-72 283.0
32 TraesCS6A01G100300 chr6D 88.276 145 16 1 2380 2523 47657932 47657788 1.100000e-38 172.0
33 TraesCS6A01G100300 chr6D 95.370 108 4 1 7700 7806 47652105 47651998 3.940000e-38 171.0
34 TraesCS6A01G100300 chr6D 91.026 78 7 0 1440 1517 47667421 47667344 1.130000e-18 106.0
35 TraesCS6A01G100300 chr6D 92.063 63 4 1 6448 6509 399221357 399221419 4.080000e-13 87.9
36 TraesCS6A01G100300 chr2D 78.296 986 149 52 1580 2524 30739283 30740244 7.140000e-160 575.0
37 TraesCS6A01G100300 chr2D 78.347 956 140 49 1615 2525 128447473 128446540 2.590000e-154 556.0
38 TraesCS6A01G100300 chr2D 78.395 324 47 10 2613 2913 422902883 422902560 1.090000e-43 189.0
39 TraesCS6A01G100300 chr2D 90.244 82 6 2 8127 8208 36197417 36197338 1.130000e-18 106.0
40 TraesCS6A01G100300 chr2D 91.026 78 7 0 1432 1509 586282154 586282231 1.130000e-18 106.0
41 TraesCS6A01G100300 chr2D 83.529 85 8 6 6476 6559 76890799 76890720 3.180000e-09 75.0
42 TraesCS6A01G100300 chr7D 77.426 1010 158 41 1571 2525 41696428 41697422 9.370000e-149 538.0
43 TraesCS6A01G100300 chr5B 77.413 974 155 51 1581 2525 485730700 485729763 3.400000e-143 520.0
44 TraesCS6A01G100300 chr5B 77.812 329 40 24 7884 8207 640039149 640039449 1.100000e-38 172.0
45 TraesCS6A01G100300 chr5B 92.958 71 4 1 8138 8208 612303959 612303890 1.460000e-17 102.0
46 TraesCS6A01G100300 chr5B 91.228 57 5 0 6451 6507 263218473 263218529 2.460000e-10 78.7
47 TraesCS6A01G100300 chr5B 90.385 52 4 1 6509 6559 428958935 428958986 5.320000e-07 67.6
48 TraesCS6A01G100300 chr5B 84.127 63 8 2 158 219 592208843 592208904 8.900000e-05 60.2
49 TraesCS6A01G100300 chr4A 84.000 525 68 15 1581 2098 84944454 84944969 2.660000e-134 490.0
50 TraesCS6A01G100300 chr1B 80.438 639 93 25 1576 2198 61453300 61452678 7.510000e-125 459.0
51 TraesCS6A01G100300 chr1B 91.336 277 12 8 7885 8158 679686899 679686632 1.300000e-97 368.0
52 TraesCS6A01G100300 chr1B 83.929 224 18 8 7883 8106 608423219 608423424 1.810000e-46 198.0
53 TraesCS6A01G100300 chr1B 83.036 224 20 8 7883 8106 608405072 608405277 3.910000e-43 187.0
54 TraesCS6A01G100300 chr1B 80.139 287 27 14 7884 8158 608458560 608458828 3.910000e-43 187.0
55 TraesCS6A01G100300 chr2A 75.537 977 158 50 1594 2525 764673686 764672746 9.920000e-109 405.0
56 TraesCS6A01G100300 chr2A 88.957 326 22 5 7884 8208 590635367 590635055 2.780000e-104 390.0
57 TraesCS6A01G100300 chr2A 75.834 869 134 48 1581 2427 7842437 7841623 1.010000e-98 372.0
58 TraesCS6A01G100300 chr2A 87.365 277 21 6 7884 8159 590630251 590629988 1.030000e-78 305.0
59 TraesCS6A01G100300 chr2A 77.536 276 39 14 2654 2906 565564957 565565232 2.390000e-30 145.0
60 TraesCS6A01G100300 chr2A 81.600 125 22 1 2787 2910 371435056 371435180 1.460000e-17 102.0
61 TraesCS6A01G100300 chr2A 97.727 44 1 0 6516 6559 678422033 678421990 8.830000e-10 76.8
62 TraesCS6A01G100300 chr2A 89.831 59 5 1 6451 6509 705926994 705927051 3.180000e-09 75.0
63 TraesCS6A01G100300 chr5D 75.075 999 179 50 1576 2521 1507092 1506111 1.280000e-107 401.0
64 TraesCS6A01G100300 chr7B 80.665 331 34 14 7884 8208 1739556 1739862 6.410000e-56 230.0
65 TraesCS6A01G100300 chr1A 80.117 342 38 14 7884 8208 396442327 396442655 2.300000e-55 228.0
66 TraesCS6A01G100300 chr1A 83.824 204 19 6 7884 8087 396449917 396450106 1.820000e-41 182.0
67 TraesCS6A01G100300 chr1A 89.024 82 7 2 8127 8208 4846249 4846170 5.240000e-17 100.0
68 TraesCS6A01G100300 chr4D 79.032 310 41 11 2624 2910 4321597 4321905 3.020000e-44 191.0
69 TraesCS6A01G100300 chr4D 94.915 59 3 0 6451 6509 474564877 474564819 8.770000e-15 93.5
70 TraesCS6A01G100300 chr3A 78.193 321 44 18 2614 2910 117226078 117226396 1.820000e-41 182.0
71 TraesCS6A01G100300 chr3A 84.127 126 20 0 2785 2910 627971973 627972098 1.120000e-23 122.0
72 TraesCS6A01G100300 chr3A 97.619 42 1 0 6516 6557 647200932 647200973 1.140000e-08 73.1
73 TraesCS6A01G100300 chr2B 77.469 324 50 7 2613 2913 495716106 495715783 1.100000e-38 172.0
74 TraesCS6A01G100300 chr2B 76.645 304 46 14 2631 2910 363799321 363799019 2.390000e-30 145.0
75 TraesCS6A01G100300 chr2B 90.244 82 6 2 8127 8208 780035167 780035246 1.130000e-18 106.0
76 TraesCS6A01G100300 chr5A 90.244 82 6 2 8127 8208 38013408 38013329 1.130000e-18 106.0
77 TraesCS6A01G100300 chr4B 92.958 71 3 2 8138 8208 646646977 646647045 1.460000e-17 102.0
78 TraesCS6A01G100300 chr4B 91.525 59 5 0 6451 6509 86067592 86067534 1.900000e-11 82.4
79 TraesCS6A01G100300 chr4B 79.630 108 18 3 6451 6557 629952439 629952335 3.180000e-09 75.0
80 TraesCS6A01G100300 chr7A 81.081 111 14 6 6451 6559 48903326 48903221 1.900000e-11 82.4
81 TraesCS6A01G100300 chr7A 86.957 69 8 1 6442 6510 648274509 648274442 8.830000e-10 76.8
82 TraesCS6A01G100300 chr3B 91.667 48 4 0 6512 6559 200863971 200864018 5.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G100300 chr6A 67531279 67539486 8207 False 7315.000000 13616 100.000000 1 8208 2 chr6A.!!$F4 8207
1 TraesCS6A01G100300 chr6A 67515135 67517789 2654 False 849.000000 1280 85.330500 5083 7215 2 chr6A.!!$F3 2132
2 TraesCS6A01G100300 chr6A 510794519 510795462 943 True 811.000000 811 82.658000 1590 2525 1 chr6A.!!$R3 935
3 TraesCS6A01G100300 chr6A 67484521 67487338 2817 False 284.533333 388 84.910000 1011 4158 3 chr6A.!!$F2 3147
4 TraesCS6A01G100300 chr6B 123829870 123845077 15207 False 1621.125000 6996 86.483375 1 7373 8 chr6B.!!$F2 7372
5 TraesCS6A01G100300 chr6D 47651805 47667874 16069 True 960.428571 3620 89.528643 1 7884 14 chr6D.!!$R1 7883
6 TraesCS6A01G100300 chr2D 30739283 30740244 961 False 575.000000 575 78.296000 1580 2524 1 chr2D.!!$F1 944
7 TraesCS6A01G100300 chr2D 128446540 128447473 933 True 556.000000 556 78.347000 1615 2525 1 chr2D.!!$R3 910
8 TraesCS6A01G100300 chr7D 41696428 41697422 994 False 538.000000 538 77.426000 1571 2525 1 chr7D.!!$F1 954
9 TraesCS6A01G100300 chr5B 485729763 485730700 937 True 520.000000 520 77.413000 1581 2525 1 chr5B.!!$R1 944
10 TraesCS6A01G100300 chr4A 84944454 84944969 515 False 490.000000 490 84.000000 1581 2098 1 chr4A.!!$F1 517
11 TraesCS6A01G100300 chr1B 61452678 61453300 622 True 459.000000 459 80.438000 1576 2198 1 chr1B.!!$R1 622
12 TraesCS6A01G100300 chr2A 764672746 764673686 940 True 405.000000 405 75.537000 1594 2525 1 chr2A.!!$R5 931
13 TraesCS6A01G100300 chr2A 7841623 7842437 814 True 372.000000 372 75.834000 1581 2427 1 chr2A.!!$R1 846
14 TraesCS6A01G100300 chr5D 1506111 1507092 981 True 401.000000 401 75.075000 1576 2521 1 chr5D.!!$R1 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 8602 0.249120 TGTGGAAGCGGAATCATCGT 59.751 50.000 0.0 0.0 0.00 3.73 F
1135 9593 0.462403 GAATTTGCCGGGCGGTAGTA 60.462 55.000 15.4 0.0 37.65 1.82 F
2776 11960 0.248907 CGCATCGGTACACCTGTAGG 60.249 60.000 0.0 0.0 42.17 3.18 F
3237 12448 1.682087 GGAGTAAACCCATGTCCAGGC 60.682 57.143 0.0 0.0 0.00 4.85 F
5038 14313 0.515127 AACACACACACACACACACG 59.485 50.000 0.0 0.0 0.00 4.49 F
5606 14883 0.109532 TTGTGGCATTTCGACAGGGA 59.890 50.000 0.0 0.0 34.86 4.20 F
5607 14884 0.327924 TGTGGCATTTCGACAGGGAT 59.672 50.000 0.0 0.0 27.70 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 11628 0.108041 GGGGCTATTGTTTCCGACGA 60.108 55.000 0.00 0.00 0.00 4.20 R
3048 12256 0.670546 TGGCGTGACTCAAGCTAAGC 60.671 55.000 15.36 1.36 38.77 3.09 R
4732 14004 0.251165 TTTCTTGAGGGGAAAGGCCG 60.251 55.000 0.00 0.00 37.63 6.13 R
5042 14317 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57 R
6991 16819 0.881118 TCTCAATTGGCTTGCCGAAC 59.119 50.000 5.42 0.00 34.66 3.95 R
7202 17030 2.605366 GGCTAGAGTCAATCTTTCACGC 59.395 50.000 0.00 0.00 39.64 5.34 R
7230 17058 4.298103 ACATGAAAGTCCTGATCAAGCT 57.702 40.909 0.00 0.00 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 7881 7.169982 TGAACACTTTTTAAAATTACATGGGCG 59.830 33.333 0.55 0.00 0.00 6.13
363 8022 9.541143 ACACTTTTAAAATTAATGAACACCTGG 57.459 29.630 0.09 0.00 0.00 4.45
375 8034 5.708736 TGAACACCTGGTTATATCCATGT 57.291 39.130 0.00 4.22 40.63 3.21
593 8303 3.012560 GCATATGGCAGACCCTGTC 57.987 57.895 4.56 0.00 43.97 3.51
594 8304 0.471617 GCATATGGCAGACCCTGTCT 59.528 55.000 4.56 0.00 44.44 3.41
595 8305 1.542108 GCATATGGCAGACCCTGTCTC 60.542 57.143 4.56 0.00 41.37 3.36
605 8315 3.831911 CAGACCCTGTCTCTCTCTCTTTT 59.168 47.826 0.00 0.00 41.37 2.27
607 8317 5.478679 CAGACCCTGTCTCTCTCTCTTTTTA 59.521 44.000 0.00 0.00 41.37 1.52
610 8320 4.528596 CCCTGTCTCTCTCTCTTTTTACCA 59.471 45.833 0.00 0.00 0.00 3.25
612 8322 5.011125 CCTGTCTCTCTCTCTTTTTACCACA 59.989 44.000 0.00 0.00 0.00 4.17
614 8324 5.362717 TGTCTCTCTCTCTTTTTACCACACA 59.637 40.000 0.00 0.00 0.00 3.72
615 8325 5.692654 GTCTCTCTCTCTTTTTACCACACAC 59.307 44.000 0.00 0.00 0.00 3.82
616 8326 5.362717 TCTCTCTCTCTTTTTACCACACACA 59.637 40.000 0.00 0.00 0.00 3.72
617 8327 5.357257 TCTCTCTCTTTTTACCACACACAC 58.643 41.667 0.00 0.00 0.00 3.82
618 8328 5.092554 TCTCTCTTTTTACCACACACACA 57.907 39.130 0.00 0.00 0.00 3.72
619 8329 5.492895 TCTCTCTTTTTACCACACACACAA 58.507 37.500 0.00 0.00 0.00 3.33
621 8331 6.431543 TCTCTCTTTTTACCACACACACAAAA 59.568 34.615 0.00 0.00 0.00 2.44
725 8435 3.724914 CTCTTCCCGCCGCTTCCTC 62.725 68.421 0.00 0.00 0.00 3.71
771 8481 2.202623 CCACAGTAGCTCGTCGCC 60.203 66.667 0.00 0.00 40.39 5.54
773 8483 4.477975 ACAGTAGCTCGTCGCCGC 62.478 66.667 0.00 0.00 40.39 6.53
816 8526 2.184322 GCGTGGGAGCATCGAAGA 59.816 61.111 0.00 0.00 45.75 2.87
817 8527 1.447838 GCGTGGGAGCATCGAAGAA 60.448 57.895 0.00 0.00 43.58 2.52
889 8601 0.652592 GTGTGGAAGCGGAATCATCG 59.347 55.000 0.00 0.00 0.00 3.84
890 8602 0.249120 TGTGGAAGCGGAATCATCGT 59.751 50.000 0.00 0.00 0.00 3.73
891 8603 0.931005 GTGGAAGCGGAATCATCGTC 59.069 55.000 0.00 0.00 0.00 4.20
910 8622 2.187946 GTGACCATCCCTCTGCCG 59.812 66.667 0.00 0.00 0.00 5.69
945 8657 1.028868 GCCACCTCTGATTCCAGTGC 61.029 60.000 0.00 0.00 41.16 4.40
949 8661 1.338200 ACCTCTGATTCCAGTGCGTTC 60.338 52.381 0.00 0.00 41.16 3.95
1134 9592 1.747745 GAATTTGCCGGGCGGTAGT 60.748 57.895 15.40 0.63 37.65 2.73
1135 9593 0.462403 GAATTTGCCGGGCGGTAGTA 60.462 55.000 15.40 0.00 37.65 1.82
1136 9594 0.463116 AATTTGCCGGGCGGTAGTAG 60.463 55.000 15.40 0.00 37.65 2.57
1353 9811 2.232208 GCTGCTTTTCTTGCCAGGTTAT 59.768 45.455 0.00 0.00 0.00 1.89
1354 9812 3.306294 GCTGCTTTTCTTGCCAGGTTATT 60.306 43.478 0.00 0.00 0.00 1.40
1355 9813 4.082245 GCTGCTTTTCTTGCCAGGTTATTA 60.082 41.667 0.00 0.00 0.00 0.98
1491 9952 0.963962 AGCTCATTTTGCACCACCAG 59.036 50.000 0.00 0.00 0.00 4.00
1523 9984 7.755373 GGGCAAGTGAGTATTGATTTCTTTAAC 59.245 37.037 0.00 0.00 0.00 2.01
1534 9995 4.390603 TGATTTCTTTAACGGACGACCATG 59.609 41.667 4.48 0.00 35.59 3.66
1535 9996 3.389925 TTCTTTAACGGACGACCATGT 57.610 42.857 4.48 0.00 35.59 3.21
1537 9998 3.319755 TCTTTAACGGACGACCATGTTC 58.680 45.455 4.48 0.00 35.59 3.18
1546 10010 6.110707 ACGGACGACCATGTTCTTTATAAAT 58.889 36.000 4.48 0.00 35.59 1.40
1613 10080 1.851021 CGTGCGTTGCAATGGGAGAA 61.851 55.000 19.93 0.00 41.47 2.87
1652 10121 5.850557 TCAACGGCCATGATCATATTTTT 57.149 34.783 8.15 0.00 0.00 1.94
2199 10763 8.208718 TCCCGAACATATGTCTTCAAAATTAG 57.791 34.615 9.23 0.00 0.00 1.73
2418 11052 0.796312 AAATAGGTGCGCTTGTCGTG 59.204 50.000 9.73 0.00 41.07 4.35
2538 11627 1.990563 GTGGGTAGTTTCGATGACGTG 59.009 52.381 0.00 0.00 40.69 4.49
2539 11628 1.614903 TGGGTAGTTTCGATGACGTGT 59.385 47.619 0.00 0.00 40.69 4.49
2554 11643 2.322161 ACGTGTCGTCGGAAACAATAG 58.678 47.619 0.00 0.00 33.69 1.73
2561 11650 1.743394 GTCGGAAACAATAGCCCCTTG 59.257 52.381 0.00 0.00 0.00 3.61
2598 11782 3.972638 ACATCCAGCCTCTTCATGTAGAT 59.027 43.478 2.17 0.00 0.00 1.98
2600 11784 5.784390 ACATCCAGCCTCTTCATGTAGATAT 59.216 40.000 2.17 0.00 0.00 1.63
2601 11785 5.735285 TCCAGCCTCTTCATGTAGATATG 57.265 43.478 2.17 2.79 0.00 1.78
2602 11786 5.397360 TCCAGCCTCTTCATGTAGATATGA 58.603 41.667 2.17 0.00 35.38 2.15
2603 11787 5.244851 TCCAGCCTCTTCATGTAGATATGAC 59.755 44.000 2.17 0.00 36.84 3.06
2626 11810 4.558898 CGCATAACGCCTAAACTAGAGGAT 60.559 45.833 0.00 0.00 35.99 3.24
2650 11834 4.284490 GGTCAATCCTAGGATCATGCTGTA 59.716 45.833 24.71 6.59 33.08 2.74
2659 11843 4.649692 AGGATCATGCTGTAATCCATGTC 58.350 43.478 11.74 0.00 41.23 3.06
2671 11855 6.108015 TGTAATCCATGTCGGGTAAAAGTAC 58.892 40.000 0.00 0.00 34.36 2.73
2691 11875 0.388649 CCCTCGTCGTGTTCTCCAAG 60.389 60.000 0.00 0.00 0.00 3.61
2696 11880 1.954146 TCGTGTTCTCCAAGCGTGC 60.954 57.895 0.00 0.00 0.00 5.34
2706 11890 1.433064 CAAGCGTGCACACACCTTT 59.567 52.632 18.64 0.00 44.40 3.11
2732 11916 2.705658 ACAGGTCTTGATTCTCCACACA 59.294 45.455 0.00 0.00 0.00 3.72
2745 11929 4.017126 TCTCCACACATTGTAGAGACGAT 58.983 43.478 0.94 0.00 39.55 3.73
2761 11945 1.139989 CGATCATAAACGGAGCGCAT 58.860 50.000 11.47 0.00 37.36 4.73
2776 11960 0.248907 CGCATCGGTACACCTGTAGG 60.249 60.000 0.00 0.00 42.17 3.18
2828 12035 6.092092 CACAATCAAAGCGACCAAATAATGA 58.908 36.000 0.00 0.00 0.00 2.57
2837 12044 3.426159 CGACCAAATAATGACAAGCGCTT 60.426 43.478 18.98 18.98 0.00 4.68
2844 12051 3.423154 GACAAGCGCTTCCACCCG 61.423 66.667 22.21 10.70 0.00 5.28
2901 12108 8.282455 TGTAACCAGTTGTCAAAAATGTTAGA 57.718 30.769 0.00 0.00 0.00 2.10
2920 12127 3.793559 AGAAACACTACGTGCAAGAACT 58.206 40.909 6.65 0.00 36.98 3.01
3008 12215 2.674357 ACGGACAACCAATTATACGTGC 59.326 45.455 0.00 0.00 35.59 5.34
3059 12267 8.887717 ACTATATTCTTGTTTGCTTAGCTTGAG 58.112 33.333 5.60 0.00 0.00 3.02
3070 12278 2.579207 TAGCTTGAGTCACGCCATAC 57.421 50.000 17.27 0.00 28.47 2.39
3115 12326 9.023967 GGTGCAAATGAACAGTAAATATGAATC 57.976 33.333 0.00 0.00 0.00 2.52
3218 12429 3.809279 TGCGTCATATCTTGCTTGTATGG 59.191 43.478 0.00 0.00 0.00 2.74
3237 12448 1.682087 GGAGTAAACCCATGTCCAGGC 60.682 57.143 0.00 0.00 0.00 4.85
3317 12528 7.233962 TCCATATACCAGTAAATGACCGTACAT 59.766 37.037 0.00 0.00 0.00 2.29
3350 12561 9.853177 AAGGTAAGGATAAATGAATAGTTCAGG 57.147 33.333 0.00 0.00 43.98 3.86
3451 12662 6.994421 AAATGGACAAATCTTAAACAGGGT 57.006 33.333 0.00 0.00 0.00 4.34
3504 12715 5.350504 TGGTTGTGGTGATTGTTTGATTT 57.649 34.783 0.00 0.00 0.00 2.17
3756 13001 2.092968 TGAGAGTGCTTTGTCACCAAGT 60.093 45.455 0.00 0.00 37.68 3.16
3913 13158 5.713792 ATCTACTGTTATCCTGTGATCCG 57.286 43.478 0.00 0.00 32.18 4.18
3971 13216 4.794278 TCAGCAACATCATCAGCAAAAT 57.206 36.364 0.00 0.00 0.00 1.82
3978 13223 4.978186 ACATCATCAGCAAAATCTTCGTG 58.022 39.130 0.00 0.00 0.00 4.35
4125 13371 4.202419 ACAGGTCACCATAGTTTAAGTGCA 60.202 41.667 0.00 0.00 0.00 4.57
4127 13373 3.127030 GGTCACCATAGTTTAAGTGCAGC 59.873 47.826 0.00 0.00 0.00 5.25
4264 13510 6.457159 TTGGTTATTAGTTTTCTCCCAGGA 57.543 37.500 0.00 0.00 0.00 3.86
4382 13652 7.751768 ATAAATGGGCTCAAAGCTAGTTATC 57.248 36.000 0.00 0.00 41.99 1.75
4732 14004 3.004419 GGGCTTTGGTTAGTGTTCAGAAC 59.996 47.826 6.32 6.32 0.00 3.01
4735 14007 1.873698 TGGTTAGTGTTCAGAACGGC 58.126 50.000 8.80 4.41 0.00 5.68
4762 14034 4.905456 TCCCCTCAAGAAACTCTACAAGAA 59.095 41.667 0.00 0.00 0.00 2.52
4954 14227 8.821686 ACATTATTTATCACCCAAGAACATCA 57.178 30.769 0.00 0.00 0.00 3.07
5035 14310 3.606346 GCTTAAAACACACACACACACAC 59.394 43.478 0.00 0.00 0.00 3.82
5036 14311 4.788690 CTTAAAACACACACACACACACA 58.211 39.130 0.00 0.00 0.00 3.72
5037 14312 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
5038 14313 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.00 0.00 4.49
5039 14314 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
5040 14315 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
5041 14316 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
5042 14317 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
5043 14318 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
5044 14319 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
5045 14320 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
5046 14321 3.858989 CACACACACGCACGCACA 61.859 61.111 0.00 0.00 0.00 4.57
5047 14322 3.860125 ACACACACGCACGCACAC 61.860 61.111 0.00 0.00 0.00 3.82
5048 14323 3.858989 CACACACGCACGCACACA 61.859 61.111 0.00 0.00 0.00 3.72
5049 14324 3.860125 ACACACGCACGCACACAC 61.860 61.111 0.00 0.00 0.00 3.82
5050 14325 3.858989 CACACGCACGCACACACA 61.859 61.111 0.00 0.00 0.00 3.72
5051 14326 3.860125 ACACGCACGCACACACAC 61.860 61.111 0.00 0.00 0.00 3.82
5052 14327 3.858989 CACGCACGCACACACACA 61.859 61.111 0.00 0.00 0.00 3.72
5053 14328 3.860125 ACGCACGCACACACACAC 61.860 61.111 0.00 0.00 0.00 3.82
5054 14329 3.858989 CGCACGCACACACACACA 61.859 61.111 0.00 0.00 0.00 3.72
5055 14330 2.277247 GCACGCACACACACACAC 60.277 61.111 0.00 0.00 0.00 3.82
5056 14331 3.033166 GCACGCACACACACACACA 62.033 57.895 0.00 0.00 0.00 3.72
5083 14358 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5097 14372 4.751600 ACACACACACACAAGTAGATCATG 59.248 41.667 0.00 0.00 0.00 3.07
5595 14872 8.091385 GAAGAATTCTGAAATTTTTGTGGCAT 57.909 30.769 9.17 0.00 43.23 4.40
5606 14883 0.109532 TTGTGGCATTTCGACAGGGA 59.890 50.000 0.00 0.00 34.86 4.20
5607 14884 0.327924 TGTGGCATTTCGACAGGGAT 59.672 50.000 0.00 0.00 27.70 3.85
5782 15060 7.551262 ACACCAATTCAACTTTCGCATACTATA 59.449 33.333 0.00 0.00 0.00 1.31
5814 15092 6.038714 GGATGATTGGAGTCATAAGTTGGAAC 59.961 42.308 0.00 0.00 38.88 3.62
6421 15713 2.672961 TATGTGCCTCTGTACACTGC 57.327 50.000 0.00 0.00 40.01 4.40
6486 15799 7.012421 GTCTCAAAATAAGTGACTCAACTTGGT 59.988 37.037 0.00 0.00 40.58 3.67
6487 15800 8.208224 TCTCAAAATAAGTGACTCAACTTGGTA 58.792 33.333 0.00 0.00 40.58 3.25
6488 15801 8.149973 TCAAAATAAGTGACTCAACTTGGTAC 57.850 34.615 0.00 0.00 40.58 3.34
6761 16553 5.207768 AGACGCGATAAAATCATTCAATGC 58.792 37.500 15.93 0.00 0.00 3.56
6777 16569 8.587608 TCATTCAATGCAGATTTTAAAGGACTT 58.412 29.630 0.00 0.00 0.00 3.01
6805 16597 5.308237 AGGTCGGATTTCTATTATCCTTGCT 59.692 40.000 0.00 0.00 39.55 3.91
6892 16720 1.512926 CTTGGTCACCTACTGTGTGC 58.487 55.000 0.00 0.00 45.61 4.57
6991 16819 1.341531 CCAGGTCGGCTATACTTCCTG 59.658 57.143 0.00 0.00 41.17 3.86
7045 16873 3.118261 ACAATGTGCTGACGGATAGGAAT 60.118 43.478 0.00 0.00 0.00 3.01
7202 17030 1.532868 CTCAAGTGCCGACTTTTGAGG 59.467 52.381 7.53 0.00 40.68 3.86
7230 17058 7.387948 GTGAAAGATTGACTCTAGCCTTGTTTA 59.612 37.037 0.00 0.00 32.41 2.01
7231 17059 7.604164 TGAAAGATTGACTCTAGCCTTGTTTAG 59.396 37.037 0.00 0.00 32.41 1.85
7232 17060 5.423886 AGATTGACTCTAGCCTTGTTTAGC 58.576 41.667 0.00 0.00 30.26 3.09
7254 17093 5.188555 AGCTTGATCAGGACTTTCATGTAGA 59.811 40.000 9.36 0.00 29.15 2.59
7366 17205 3.496131 CACACGCATACCGCCACC 61.496 66.667 0.00 0.00 41.76 4.61
7680 17519 3.053455 GTTGCTATGAGTCTATGACGCC 58.947 50.000 0.00 0.00 37.67 5.68
7681 17520 2.306847 TGCTATGAGTCTATGACGCCA 58.693 47.619 0.00 0.00 37.67 5.69
7682 17521 2.294512 TGCTATGAGTCTATGACGCCAG 59.705 50.000 0.00 0.00 37.67 4.85
7683 17522 2.294791 GCTATGAGTCTATGACGCCAGT 59.705 50.000 0.00 0.00 37.67 4.00
7694 17533 1.033574 GACGCCAGTCATAGGTAGCT 58.966 55.000 0.00 0.00 46.32 3.32
7695 17534 2.228059 GACGCCAGTCATAGGTAGCTA 58.772 52.381 3.73 3.73 46.32 3.32
7696 17535 1.955080 ACGCCAGTCATAGGTAGCTAC 59.045 52.381 15.88 15.88 0.00 3.58
7762 17687 4.020617 CCCGTGAAGCAGGCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
7780 17705 2.019249 CCAGTGCATGATTTCCATCGT 58.981 47.619 0.00 0.00 31.94 3.73
7799 17724 5.095691 TCGTGATGACTTGCTTTTCTTTC 57.904 39.130 0.00 0.00 0.00 2.62
7853 17784 1.410882 GAGAGCTATCGCCTCACCTTT 59.589 52.381 0.00 0.00 35.12 3.11
7859 17790 0.693049 ATCGCCTCACCTTTCACCTT 59.307 50.000 0.00 0.00 0.00 3.50
7884 17815 1.131883 CCGTACCGGTTGTACTCTCTG 59.868 57.143 15.04 0.00 46.36 3.35
7885 17816 1.808945 CGTACCGGTTGTACTCTCTGT 59.191 52.381 15.04 0.00 46.36 3.41
7886 17817 2.413765 CGTACCGGTTGTACTCTCTGTG 60.414 54.545 15.04 0.00 46.36 3.66
7887 17818 0.317479 ACCGGTTGTACTCTCTGTGC 59.683 55.000 0.00 0.00 0.00 4.57
7888 17819 0.732880 CCGGTTGTACTCTCTGTGCG 60.733 60.000 0.00 0.00 33.83 5.34
7889 17820 0.039437 CGGTTGTACTCTCTGTGCGT 60.039 55.000 0.00 0.00 33.83 5.24
7890 17821 1.602165 CGGTTGTACTCTCTGTGCGTT 60.602 52.381 0.00 0.00 33.83 4.84
7891 17822 2.351060 CGGTTGTACTCTCTGTGCGTTA 60.351 50.000 0.00 0.00 33.83 3.18
7892 17823 3.243336 GGTTGTACTCTCTGTGCGTTAG 58.757 50.000 0.00 0.00 33.83 2.34
7893 17824 3.243336 GTTGTACTCTCTGTGCGTTAGG 58.757 50.000 0.00 0.00 33.83 2.69
7894 17825 1.201647 TGTACTCTCTGTGCGTTAGGC 59.798 52.381 0.00 0.00 43.96 3.93
7914 17845 1.988063 GGAAACGTCTTACCTCGACC 58.012 55.000 0.00 0.00 0.00 4.79
7915 17846 1.543358 GGAAACGTCTTACCTCGACCT 59.457 52.381 0.00 0.00 0.00 3.85
7916 17847 2.593257 GAAACGTCTTACCTCGACCTG 58.407 52.381 0.00 0.00 0.00 4.00
7917 17848 1.901591 AACGTCTTACCTCGACCTGA 58.098 50.000 0.00 0.00 0.00 3.86
7918 17849 1.451067 ACGTCTTACCTCGACCTGAG 58.549 55.000 0.00 0.00 44.83 3.35
7925 17856 2.651361 CTCGACCTGAGGCAACGT 59.349 61.111 0.00 0.00 41.29 3.99
7926 17857 1.734477 CTCGACCTGAGGCAACGTG 60.734 63.158 0.00 0.00 41.29 4.49
7927 17858 3.414700 CGACCTGAGGCAACGTGC 61.415 66.667 0.00 0.00 44.08 5.34
7928 17859 2.031163 GACCTGAGGCAACGTGCT 59.969 61.111 0.00 0.00 44.28 4.40
7929 17860 1.598130 GACCTGAGGCAACGTGCTT 60.598 57.895 0.00 2.64 44.28 3.91
7944 17875 4.485489 CGTGCTTCGTGTTTATAGACAG 57.515 45.455 0.00 0.00 34.52 3.51
7945 17876 3.303495 CGTGCTTCGTGTTTATAGACAGG 59.697 47.826 9.24 9.24 36.90 4.00
7946 17877 3.617263 GTGCTTCGTGTTTATAGACAGGG 59.383 47.826 14.08 3.01 36.39 4.45
7947 17878 3.195661 GCTTCGTGTTTATAGACAGGGG 58.804 50.000 14.08 9.59 36.39 4.79
7948 17879 2.973694 TCGTGTTTATAGACAGGGGC 57.026 50.000 14.08 0.00 36.39 5.80
7949 17880 1.135527 TCGTGTTTATAGACAGGGGCG 59.864 52.381 14.08 6.94 36.39 6.13
7950 17881 1.296727 GTGTTTATAGACAGGGGCGC 58.703 55.000 0.00 0.00 0.00 6.53
7951 17882 0.906066 TGTTTATAGACAGGGGCGCA 59.094 50.000 10.83 0.00 0.00 6.09
7952 17883 1.296727 GTTTATAGACAGGGGCGCAC 58.703 55.000 10.83 4.83 0.00 5.34
7953 17884 0.906066 TTTATAGACAGGGGCGCACA 59.094 50.000 13.89 0.00 0.00 4.57
7954 17885 1.128200 TTATAGACAGGGGCGCACAT 58.872 50.000 13.89 0.00 0.00 3.21
7955 17886 0.679505 TATAGACAGGGGCGCACATC 59.320 55.000 13.89 5.73 0.00 3.06
7956 17887 2.044806 ATAGACAGGGGCGCACATCC 62.045 60.000 13.89 6.06 0.00 3.51
7961 17892 4.424711 GGGGCGCACATCCCTGAA 62.425 66.667 13.89 0.00 43.41 3.02
7962 17893 2.825836 GGGCGCACATCCCTGAAG 60.826 66.667 10.83 0.00 40.66 3.02
7963 17894 3.512516 GGCGCACATCCCTGAAGC 61.513 66.667 10.83 0.00 0.00 3.86
7964 17895 3.869272 GCGCACATCCCTGAAGCG 61.869 66.667 0.30 0.00 45.84 4.68
7965 17896 3.869272 CGCACATCCCTGAAGCGC 61.869 66.667 0.00 0.00 40.97 5.92
7966 17897 2.747460 GCACATCCCTGAAGCGCA 60.747 61.111 11.47 0.00 0.00 6.09
7967 17898 2.117156 GCACATCCCTGAAGCGCAT 61.117 57.895 11.47 0.00 0.00 4.73
7968 17899 0.815213 GCACATCCCTGAAGCGCATA 60.815 55.000 11.47 0.00 0.00 3.14
7969 17900 0.940126 CACATCCCTGAAGCGCATAC 59.060 55.000 11.47 0.08 0.00 2.39
7970 17901 0.541392 ACATCCCTGAAGCGCATACA 59.459 50.000 11.47 5.54 0.00 2.29
7971 17902 1.141657 ACATCCCTGAAGCGCATACAT 59.858 47.619 11.47 0.00 0.00 2.29
7972 17903 2.224606 CATCCCTGAAGCGCATACATT 58.775 47.619 11.47 0.00 0.00 2.71
7973 17904 1.667236 TCCCTGAAGCGCATACATTG 58.333 50.000 11.47 1.06 0.00 2.82
7974 17905 1.065491 TCCCTGAAGCGCATACATTGT 60.065 47.619 11.47 0.00 0.00 2.71
7975 17906 1.745087 CCCTGAAGCGCATACATTGTT 59.255 47.619 11.47 0.00 0.00 2.83
7976 17907 2.478370 CCCTGAAGCGCATACATTGTTG 60.478 50.000 11.47 0.00 0.00 3.33
7977 17908 2.478370 CCTGAAGCGCATACATTGTTGG 60.478 50.000 11.47 0.00 0.00 3.77
7978 17909 2.419673 CTGAAGCGCATACATTGTTGGA 59.580 45.455 11.47 0.00 0.00 3.53
7979 17910 2.419673 TGAAGCGCATACATTGTTGGAG 59.580 45.455 11.47 0.00 0.00 3.86
7980 17911 2.401583 AGCGCATACATTGTTGGAGA 57.598 45.000 11.47 0.00 0.00 3.71
7981 17912 2.923121 AGCGCATACATTGTTGGAGAT 58.077 42.857 11.47 0.00 0.00 2.75
7982 17913 4.071961 AGCGCATACATTGTTGGAGATA 57.928 40.909 11.47 0.00 0.00 1.98
7983 17914 4.645535 AGCGCATACATTGTTGGAGATAT 58.354 39.130 11.47 0.00 0.00 1.63
7984 17915 5.065914 AGCGCATACATTGTTGGAGATATT 58.934 37.500 11.47 0.00 0.00 1.28
7985 17916 6.230472 AGCGCATACATTGTTGGAGATATTA 58.770 36.000 11.47 0.00 0.00 0.98
7986 17917 6.147821 AGCGCATACATTGTTGGAGATATTAC 59.852 38.462 11.47 0.00 0.00 1.89
7987 17918 6.073276 GCGCATACATTGTTGGAGATATTACA 60.073 38.462 0.30 0.00 0.00 2.41
7988 17919 7.513132 CGCATACATTGTTGGAGATATTACAG 58.487 38.462 0.00 0.00 0.00 2.74
7989 17920 7.360353 CGCATACATTGTTGGAGATATTACAGG 60.360 40.741 0.00 0.00 0.00 4.00
7990 17921 7.661437 GCATACATTGTTGGAGATATTACAGGA 59.339 37.037 0.00 0.00 0.00 3.86
7991 17922 9.212641 CATACATTGTTGGAGATATTACAGGAG 57.787 37.037 0.00 0.00 0.00 3.69
7992 17923 6.595682 ACATTGTTGGAGATATTACAGGAGG 58.404 40.000 0.00 0.00 0.00 4.30
7993 17924 4.689612 TGTTGGAGATATTACAGGAGGC 57.310 45.455 0.00 0.00 0.00 4.70
7994 17925 4.037222 TGTTGGAGATATTACAGGAGGCA 58.963 43.478 0.00 0.00 0.00 4.75
7995 17926 4.101585 TGTTGGAGATATTACAGGAGGCAG 59.898 45.833 0.00 0.00 0.00 4.85
7996 17927 3.242867 TGGAGATATTACAGGAGGCAGG 58.757 50.000 0.00 0.00 0.00 4.85
7997 17928 3.116746 TGGAGATATTACAGGAGGCAGGA 60.117 47.826 0.00 0.00 0.00 3.86
7998 17929 3.513515 GGAGATATTACAGGAGGCAGGAG 59.486 52.174 0.00 0.00 0.00 3.69
7999 17930 3.513515 GAGATATTACAGGAGGCAGGAGG 59.486 52.174 0.00 0.00 0.00 4.30
8000 17931 2.868964 TATTACAGGAGGCAGGAGGT 57.131 50.000 0.00 0.00 0.00 3.85
8001 17932 1.972588 ATTACAGGAGGCAGGAGGTT 58.027 50.000 0.00 0.00 0.00 3.50
8002 17933 1.742308 TTACAGGAGGCAGGAGGTTT 58.258 50.000 0.00 0.00 0.00 3.27
8003 17934 2.634639 TACAGGAGGCAGGAGGTTTA 57.365 50.000 0.00 0.00 0.00 2.01
8004 17935 1.280457 ACAGGAGGCAGGAGGTTTAG 58.720 55.000 0.00 0.00 0.00 1.85
8005 17936 1.203313 ACAGGAGGCAGGAGGTTTAGA 60.203 52.381 0.00 0.00 0.00 2.10
8006 17937 1.909302 CAGGAGGCAGGAGGTTTAGAA 59.091 52.381 0.00 0.00 0.00 2.10
8007 17938 1.909986 AGGAGGCAGGAGGTTTAGAAC 59.090 52.381 0.00 0.00 0.00 3.01
8008 17939 1.909986 GGAGGCAGGAGGTTTAGAACT 59.090 52.381 0.00 0.00 0.00 3.01
8009 17940 2.306219 GGAGGCAGGAGGTTTAGAACTT 59.694 50.000 0.00 0.00 0.00 2.66
8010 17941 3.339141 GAGGCAGGAGGTTTAGAACTTG 58.661 50.000 0.00 0.00 0.00 3.16
8011 17942 2.040412 AGGCAGGAGGTTTAGAACTTGG 59.960 50.000 0.00 0.00 0.00 3.61
8012 17943 2.039879 GGCAGGAGGTTTAGAACTTGGA 59.960 50.000 0.00 0.00 0.00 3.53
8013 17944 3.339141 GCAGGAGGTTTAGAACTTGGAG 58.661 50.000 0.00 0.00 0.00 3.86
8014 17945 3.008049 GCAGGAGGTTTAGAACTTGGAGA 59.992 47.826 0.00 0.00 0.00 3.71
8015 17946 4.505039 GCAGGAGGTTTAGAACTTGGAGAA 60.505 45.833 0.00 0.00 0.00 2.87
8016 17947 4.998033 CAGGAGGTTTAGAACTTGGAGAAC 59.002 45.833 0.00 0.00 0.00 3.01
8017 17948 4.658901 AGGAGGTTTAGAACTTGGAGAACA 59.341 41.667 0.00 0.00 0.00 3.18
8018 17949 5.132144 AGGAGGTTTAGAACTTGGAGAACAA 59.868 40.000 0.00 0.00 37.55 2.83
8035 17966 9.832445 TGGAGAACAAGAGATATAATTGGTTAC 57.168 33.333 0.00 0.00 0.00 2.50
8036 17967 9.832445 GGAGAACAAGAGATATAATTGGTTACA 57.168 33.333 0.00 0.00 0.00 2.41
8051 17982 7.979786 ATTGGTTACAAGAGATAAGGAGAGA 57.020 36.000 0.00 0.00 40.49 3.10
8052 17983 7.979786 TTGGTTACAAGAGATAAGGAGAGAT 57.020 36.000 0.00 0.00 31.73 2.75
8053 17984 9.661954 ATTGGTTACAAGAGATAAGGAGAGATA 57.338 33.333 0.00 0.00 40.49 1.98
8054 17985 9.661954 TTGGTTACAAGAGATAAGGAGAGATAT 57.338 33.333 0.00 0.00 31.73 1.63
8087 18018 8.998277 TGTAACTCAAACTAGCTATCCTATCT 57.002 34.615 0.00 0.00 0.00 1.98
8088 18019 9.422681 TGTAACTCAAACTAGCTATCCTATCTT 57.577 33.333 0.00 0.00 0.00 2.40
8089 18020 9.902196 GTAACTCAAACTAGCTATCCTATCTTC 57.098 37.037 0.00 0.00 0.00 2.87
8090 18021 7.533289 ACTCAAACTAGCTATCCTATCTTCC 57.467 40.000 0.00 0.00 0.00 3.46
8091 18022 6.495526 ACTCAAACTAGCTATCCTATCTTCCC 59.504 42.308 0.00 0.00 0.00 3.97
8092 18023 6.625267 TCAAACTAGCTATCCTATCTTCCCT 58.375 40.000 0.00 0.00 0.00 4.20
8093 18024 6.495181 TCAAACTAGCTATCCTATCTTCCCTG 59.505 42.308 0.00 0.00 0.00 4.45
8094 18025 4.941713 ACTAGCTATCCTATCTTCCCTGG 58.058 47.826 0.00 0.00 0.00 4.45
8095 18026 4.608473 ACTAGCTATCCTATCTTCCCTGGA 59.392 45.833 0.00 0.00 0.00 3.86
8096 18027 4.708420 AGCTATCCTATCTTCCCTGGAT 57.292 45.455 0.00 0.00 41.59 3.41
8097 18028 4.619679 AGCTATCCTATCTTCCCTGGATC 58.380 47.826 0.00 0.00 39.67 3.36
8098 18029 3.709141 GCTATCCTATCTTCCCTGGATCC 59.291 52.174 4.20 4.20 39.67 3.36
8099 18030 4.573955 GCTATCCTATCTTCCCTGGATCCT 60.574 50.000 14.23 0.00 39.67 3.24
8100 18031 3.266477 TCCTATCTTCCCTGGATCCTG 57.734 52.381 14.23 12.81 0.00 3.86
8101 18032 1.627834 CCTATCTTCCCTGGATCCTGC 59.372 57.143 14.23 0.00 0.00 4.85
8102 18033 1.274728 CTATCTTCCCTGGATCCTGCG 59.725 57.143 14.23 5.03 0.00 5.18
8103 18034 2.049627 ATCTTCCCTGGATCCTGCGC 62.050 60.000 14.23 0.00 0.00 6.09
8104 18035 3.764160 CTTCCCTGGATCCTGCGCC 62.764 68.421 14.23 0.00 0.00 6.53
8105 18036 4.804420 TCCCTGGATCCTGCGCCT 62.804 66.667 14.23 0.00 0.00 5.52
8106 18037 4.247380 CCCTGGATCCTGCGCCTC 62.247 72.222 14.23 0.00 0.00 4.70
8107 18038 3.160047 CCTGGATCCTGCGCCTCT 61.160 66.667 14.23 0.00 0.00 3.69
8108 18039 2.739996 CCTGGATCCTGCGCCTCTT 61.740 63.158 14.23 0.00 0.00 2.85
8109 18040 1.523258 CTGGATCCTGCGCCTCTTG 60.523 63.158 14.23 0.00 0.00 3.02
8110 18041 2.203126 GGATCCTGCGCCTCTTGG 60.203 66.667 4.18 0.00 0.00 3.61
8111 18042 2.735772 GGATCCTGCGCCTCTTGGA 61.736 63.158 4.18 5.25 34.57 3.53
8112 18043 1.522580 GATCCTGCGCCTCTTGGAC 60.523 63.158 4.18 0.00 34.57 4.02
8113 18044 1.965754 GATCCTGCGCCTCTTGGACT 61.966 60.000 4.18 0.00 34.57 3.85
8114 18045 1.965754 ATCCTGCGCCTCTTGGACTC 61.966 60.000 4.18 0.00 34.57 3.36
8115 18046 2.654079 CCTGCGCCTCTTGGACTCT 61.654 63.158 4.18 0.00 34.57 3.24
8116 18047 1.447489 CTGCGCCTCTTGGACTCTG 60.447 63.158 4.18 0.00 34.57 3.35
8117 18048 2.164865 CTGCGCCTCTTGGACTCTGT 62.165 60.000 4.18 0.00 34.57 3.41
8118 18049 1.446966 GCGCCTCTTGGACTCTGTC 60.447 63.158 0.00 0.00 34.57 3.51
8119 18050 1.967535 CGCCTCTTGGACTCTGTCA 59.032 57.895 0.07 0.00 33.68 3.58
8120 18051 0.534412 CGCCTCTTGGACTCTGTCAT 59.466 55.000 0.07 0.00 33.68 3.06
8121 18052 1.751351 CGCCTCTTGGACTCTGTCATA 59.249 52.381 0.07 0.00 33.68 2.15
8122 18053 2.480416 CGCCTCTTGGACTCTGTCATAC 60.480 54.545 0.07 0.00 33.68 2.39
8123 18054 2.480416 GCCTCTTGGACTCTGTCATACG 60.480 54.545 0.07 0.00 33.68 3.06
8124 18055 2.755655 CCTCTTGGACTCTGTCATACGT 59.244 50.000 0.00 0.00 33.68 3.57
8125 18056 3.428180 CCTCTTGGACTCTGTCATACGTG 60.428 52.174 0.00 0.00 33.68 4.49
8126 18057 3.418047 TCTTGGACTCTGTCATACGTGA 58.582 45.455 0.00 0.00 33.68 4.35
8127 18058 7.607990 CCTCTTGGACTCTGTCATACGTGAC 62.608 52.000 0.00 0.00 44.58 3.67
8170 18101 5.892160 GTGTTTAACACCCTCCCTTAATC 57.108 43.478 16.58 0.00 43.05 1.75
8171 18102 5.318630 GTGTTTAACACCCTCCCTTAATCA 58.681 41.667 16.58 0.00 43.05 2.57
8172 18103 5.182570 GTGTTTAACACCCTCCCTTAATCAC 59.817 44.000 16.58 0.00 43.05 3.06
8173 18104 5.163077 TGTTTAACACCCTCCCTTAATCACA 60.163 40.000 0.00 0.00 0.00 3.58
8174 18105 5.586155 TTAACACCCTCCCTTAATCACAA 57.414 39.130 0.00 0.00 0.00 3.33
8175 18106 3.434940 ACACCCTCCCTTAATCACAAC 57.565 47.619 0.00 0.00 0.00 3.32
8176 18107 2.986728 ACACCCTCCCTTAATCACAACT 59.013 45.455 0.00 0.00 0.00 3.16
8177 18108 3.397955 ACACCCTCCCTTAATCACAACTT 59.602 43.478 0.00 0.00 0.00 2.66
8178 18109 4.010349 CACCCTCCCTTAATCACAACTTC 58.990 47.826 0.00 0.00 0.00 3.01
8179 18110 3.655777 ACCCTCCCTTAATCACAACTTCA 59.344 43.478 0.00 0.00 0.00 3.02
8180 18111 4.292306 ACCCTCCCTTAATCACAACTTCAT 59.708 41.667 0.00 0.00 0.00 2.57
8181 18112 4.884164 CCCTCCCTTAATCACAACTTCATC 59.116 45.833 0.00 0.00 0.00 2.92
8182 18113 5.500234 CCTCCCTTAATCACAACTTCATCA 58.500 41.667 0.00 0.00 0.00 3.07
8183 18114 5.945784 CCTCCCTTAATCACAACTTCATCAA 59.054 40.000 0.00 0.00 0.00 2.57
8184 18115 6.094603 CCTCCCTTAATCACAACTTCATCAAG 59.905 42.308 0.00 0.00 35.50 3.02
8185 18116 6.542821 TCCCTTAATCACAACTTCATCAAGT 58.457 36.000 0.00 0.00 45.43 3.16
8198 18129 7.823745 ACTTCATCAAGTTGAGGTTATGTTT 57.176 32.000 16.49 0.00 40.16 2.83
8199 18130 8.918202 ACTTCATCAAGTTGAGGTTATGTTTA 57.082 30.769 16.49 0.00 40.16 2.01
8200 18131 9.349713 ACTTCATCAAGTTGAGGTTATGTTTAA 57.650 29.630 16.49 1.38 40.16 1.52
8203 18134 9.349713 TCATCAAGTTGAGGTTATGTTTAAAGT 57.650 29.630 16.49 0.00 29.15 2.66
8204 18135 9.612620 CATCAAGTTGAGGTTATGTTTAAAGTC 57.387 33.333 11.91 0.00 0.00 3.01
8205 18136 8.974060 TCAAGTTGAGGTTATGTTTAAAGTCT 57.026 30.769 0.08 0.00 0.00 3.24
8206 18137 9.403583 TCAAGTTGAGGTTATGTTTAAAGTCTT 57.596 29.630 0.08 0.00 0.00 3.01
8207 18138 9.665264 CAAGTTGAGGTTATGTTTAAAGTCTTC 57.335 33.333 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
385 8044 8.117370 TGAAATTTCATAAAATGCATTCGCATG 58.883 29.630 16.91 15.20 44.59 4.06
481 8142 9.078990 CTCTTTCCCTTTTCTGTTACCTTTATT 57.921 33.333 0.00 0.00 0.00 1.40
483 8144 7.808218 TCTCTTTCCCTTTTCTGTTACCTTTA 58.192 34.615 0.00 0.00 0.00 1.85
487 8148 6.954487 TTTCTCTTTCCCTTTTCTGTTACC 57.046 37.500 0.00 0.00 0.00 2.85
574 8282 0.536006 GACAGGGTCTGCCATATGCC 60.536 60.000 0.00 0.00 40.16 4.40
576 8284 2.036992 GAGAGACAGGGTCTGCCATATG 59.963 54.545 3.21 0.00 43.53 1.78
581 8291 0.324275 AGAGAGAGACAGGGTCTGCC 60.324 60.000 3.21 0.00 43.53 4.85
586 8296 4.528987 GGTAAAAAGAGAGAGAGACAGGGT 59.471 45.833 0.00 0.00 0.00 4.34
590 8300 5.362717 TGTGTGGTAAAAAGAGAGAGAGACA 59.637 40.000 0.00 0.00 0.00 3.41
591 8301 5.692654 GTGTGTGGTAAAAAGAGAGAGAGAC 59.307 44.000 0.00 0.00 0.00 3.36
593 8303 5.463724 GTGTGTGTGGTAAAAAGAGAGAGAG 59.536 44.000 0.00 0.00 0.00 3.20
594 8304 5.105106 TGTGTGTGTGGTAAAAAGAGAGAGA 60.105 40.000 0.00 0.00 0.00 3.10
595 8305 5.116180 TGTGTGTGTGGTAAAAAGAGAGAG 58.884 41.667 0.00 0.00 0.00 3.20
725 8435 6.620893 GAAATTGTTTCCTACCCTCCATGGG 61.621 48.000 13.02 2.26 46.40 4.00
861 8573 3.357079 CTTCCACACACGGCCTGC 61.357 66.667 0.00 0.00 0.00 4.85
889 8601 1.517832 CAGAGGGATGGTCACGGAC 59.482 63.158 0.00 0.00 0.00 4.79
890 8602 2.359169 GCAGAGGGATGGTCACGGA 61.359 63.158 0.00 0.00 0.00 4.69
891 8603 2.187946 GCAGAGGGATGGTCACGG 59.812 66.667 0.00 0.00 0.00 4.94
929 8641 0.687354 AACGCACTGGAATCAGAGGT 59.313 50.000 0.00 0.00 43.49 3.85
930 8642 1.363744 GAACGCACTGGAATCAGAGG 58.636 55.000 0.00 0.00 43.49 3.69
945 8657 1.190763 CGTTACTGGTTGGAACGAACG 59.809 52.381 7.30 0.00 46.78 3.95
949 8661 1.864176 GCCGTTACTGGTTGGAACG 59.136 57.895 6.22 6.22 44.20 3.95
1134 9592 1.194121 TCCTCCTGTTGCTGCTGCTA 61.194 55.000 17.00 6.36 40.48 3.49
1135 9593 2.033757 CCTCCTGTTGCTGCTGCT 59.966 61.111 17.00 0.00 40.48 4.24
1136 9594 2.033141 TCCTCCTGTTGCTGCTGC 59.967 61.111 8.89 8.89 40.20 5.25
1181 9639 3.056035 GTCGTCATAAAGGACCTCCAACT 60.056 47.826 0.00 0.00 36.90 3.16
1353 9811 6.421501 TCGATTTTGCTTACAAGAACGACTAA 59.578 34.615 0.00 0.00 39.26 2.24
1354 9812 5.921976 TCGATTTTGCTTACAAGAACGACTA 59.078 36.000 0.00 0.00 39.26 2.59
1355 9813 4.748102 TCGATTTTGCTTACAAGAACGACT 59.252 37.500 0.00 0.00 39.26 4.18
1491 9952 4.072131 TCAATACTCACTTGCCCAAAGAC 58.928 43.478 0.00 0.00 39.38 3.01
1523 9984 6.256975 TCATTTATAAAGAACATGGTCGTCCG 59.743 38.462 4.80 0.00 36.30 4.79
1585 10049 2.735478 CAACGCACGGCCGTCTTA 60.735 61.111 31.80 0.00 41.16 2.10
1652 10121 5.363580 TGATAGTGTATCTTGGTGATGCAGA 59.636 40.000 0.00 0.00 45.85 4.26
1747 10256 5.143660 TCTGTAAAAATGTTCACGATTGCG 58.856 37.500 0.00 0.00 44.79 4.85
1864 10400 8.603181 GTTCGCCTATTCAATAAAAATGCATTT 58.397 29.630 18.99 18.99 0.00 2.32
1867 10404 6.625362 TGTTCGCCTATTCAATAAAAATGCA 58.375 32.000 0.00 0.00 0.00 3.96
1988 10535 5.858049 TGTTCGCAGATTCAAAAATGATCAC 59.142 36.000 0.00 0.00 35.04 3.06
2216 10804 8.206189 AGTTTTGGATTCAGAAAATGTTCATGT 58.794 29.630 0.00 0.00 36.09 3.21
2430 11064 3.031736 GGAACCCTCTATACTGCACTCA 58.968 50.000 0.00 0.00 0.00 3.41
2538 11627 1.004595 GGGCTATTGTTTCCGACGAC 58.995 55.000 0.00 0.00 0.00 4.34
2539 11628 0.108041 GGGGCTATTGTTTCCGACGA 60.108 55.000 0.00 0.00 0.00 4.20
2544 11633 6.731292 AATAATCAAGGGGCTATTGTTTCC 57.269 37.500 2.93 0.00 0.00 3.13
2579 11668 5.244851 GTCATATCTACATGAAGAGGCTGGA 59.755 44.000 0.00 0.00 36.71 3.86
2582 11671 4.321601 GCGTCATATCTACATGAAGAGGCT 60.322 45.833 0.00 0.00 36.78 4.58
2626 11810 3.072038 CAGCATGATCCTAGGATTGACCA 59.928 47.826 25.25 18.02 39.69 4.02
2650 11834 4.520179 GGTACTTTTACCCGACATGGATT 58.480 43.478 0.00 0.00 42.05 3.01
2671 11855 1.812686 TTGGAGAACACGACGAGGGG 61.813 60.000 0.00 0.00 0.00 4.79
2691 11875 3.231160 GTTTATAAAGGTGTGTGCACGC 58.769 45.455 23.40 23.40 46.13 5.34
2696 11880 6.485313 TCAAGACCTGTTTATAAAGGTGTGTG 59.515 38.462 12.65 9.87 46.97 3.82
2706 11890 7.103641 GTGTGGAGAATCAAGACCTGTTTATA 58.896 38.462 0.00 0.00 36.25 0.98
2732 11916 6.387041 TCCGTTTATGATCGTCTCTACAAT 57.613 37.500 0.00 0.00 0.00 2.71
2745 11929 0.874175 CCGATGCGCTCCGTTTATGA 60.874 55.000 9.73 0.00 0.00 2.15
2806 12013 6.092092 TGTCATTATTTGGTCGCTTTGATTG 58.908 36.000 0.00 0.00 0.00 2.67
2837 12044 1.952621 AGAATTCTTCTCCGGGTGGA 58.047 50.000 0.88 0.00 43.88 4.02
2844 12051 8.041323 TGTATCACAGGTTTAGAATTCTTCTCC 58.959 37.037 14.36 12.79 41.14 3.71
2868 12075 3.073798 TGACAACTGGTTACATGGGATGT 59.926 43.478 0.00 0.00 46.92 3.06
2869 12076 3.684908 TGACAACTGGTTACATGGGATG 58.315 45.455 0.00 0.00 0.00 3.51
2920 12127 1.355381 AGCTCCATTCCAACACCATCA 59.645 47.619 0.00 0.00 0.00 3.07
3035 12243 8.792830 ACTCAAGCTAAGCAAACAAGAATATA 57.207 30.769 0.00 0.00 0.00 0.86
3048 12256 0.670546 TGGCGTGACTCAAGCTAAGC 60.671 55.000 15.36 1.36 38.77 3.09
3059 12267 2.412089 GTCACTCTTTGTATGGCGTGAC 59.588 50.000 0.00 0.00 42.68 3.67
3070 12278 5.239306 TGCACCTTATTTGAGTCACTCTTTG 59.761 40.000 6.33 0.00 0.00 2.77
3218 12429 1.282157 AGCCTGGACATGGGTTTACTC 59.718 52.381 0.00 0.00 30.18 2.59
3451 12662 4.123506 ACACATACGACACACAATTGTCA 58.876 39.130 8.48 0.00 45.38 3.58
3882 13127 9.181805 CACAGGATAACAGTAGATATTAACGTG 57.818 37.037 0.00 0.00 0.00 4.49
3899 13144 9.875691 CAAATCTATATTCGGATCACAGGATAA 57.124 33.333 0.00 0.00 32.67 1.75
3971 13216 0.613260 AATACTGCCTGCCACGAAGA 59.387 50.000 0.00 0.00 0.00 2.87
4125 13371 2.421424 GCCAAAGTTCAAGATCATCGCT 59.579 45.455 0.00 0.00 0.00 4.93
4127 13373 4.631377 TGTAGCCAAAGTTCAAGATCATCG 59.369 41.667 0.00 0.00 0.00 3.84
4251 13497 6.665992 AAATTAGGTTTCCTGGGAGAAAAC 57.334 37.500 0.00 0.00 42.63 2.43
4363 13633 4.844349 AAGATAACTAGCTTTGAGCCCA 57.156 40.909 0.00 0.00 43.77 5.36
4382 13652 5.010012 AGTTGGGTAAAGATGCAGAACAAAG 59.990 40.000 0.00 0.00 0.00 2.77
4491 13761 8.850156 GCACCATTAAATTCATATACCTGACTT 58.150 33.333 0.00 0.00 0.00 3.01
4551 13823 7.566879 AGGTTGCCCATATACCAATGAATAAAA 59.433 33.333 0.00 0.00 34.32 1.52
4628 13900 8.056407 TCCCGATGACATTGAAGTAGATATAG 57.944 38.462 4.07 0.00 0.00 1.31
4647 13919 1.139853 GAGGAGCACTGATTTCCCGAT 59.860 52.381 0.00 0.00 0.00 4.18
4715 13987 2.215196 GCCGTTCTGAACACTAACCAA 58.785 47.619 19.56 0.00 0.00 3.67
4732 14004 0.251165 TTTCTTGAGGGGAAAGGCCG 60.251 55.000 0.00 0.00 37.63 6.13
4735 14007 3.797559 AGAGTTTCTTGAGGGGAAAGG 57.202 47.619 0.00 0.00 34.02 3.11
4762 14034 5.499139 TTGAAGCGAGACTGTTTGAAAAT 57.501 34.783 0.00 0.00 0.00 1.82
5035 14310 3.858989 TGTGTGTGTGCGTGCGTG 61.859 61.111 0.00 0.00 0.00 5.34
5036 14311 3.860125 GTGTGTGTGTGCGTGCGT 61.860 61.111 0.00 0.00 0.00 5.24
5037 14312 3.858989 TGTGTGTGTGTGCGTGCG 61.859 61.111 0.00 0.00 0.00 5.34
5038 14313 2.277247 GTGTGTGTGTGTGCGTGC 60.277 61.111 0.00 0.00 0.00 5.34
5039 14314 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
5040 14315 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
5041 14316 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
5042 14317 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
5043 14318 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5044 14319 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5045 14320 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5046 14321 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5047 14322 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5048 14323 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5049 14324 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5050 14325 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5051 14326 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5052 14327 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5053 14328 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5054 14329 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5055 14330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5056 14331 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5083 14358 9.322773 ACAAGACAATATCATGATCTACTTGTG 57.677 33.333 26.47 17.16 41.21 3.33
5595 14872 2.503765 TGAAGCCATATCCCTGTCGAAA 59.496 45.455 0.00 0.00 0.00 3.46
5606 14883 8.696043 TGATAGTTAGCAAATTGAAGCCATAT 57.304 30.769 0.00 0.00 0.00 1.78
5607 14884 8.696043 ATGATAGTTAGCAAATTGAAGCCATA 57.304 30.769 0.00 0.00 0.00 2.74
5814 15092 7.769272 TTAAACAGTCTGCAAAATTTTGAGG 57.231 32.000 30.40 21.14 40.55 3.86
6421 15713 4.611310 AATCATGTTGCTTCAGATGACG 57.389 40.909 0.00 0.00 0.00 4.35
6711 16503 7.210174 TGAGATAGGGTATGTTCTTTTGATCG 58.790 38.462 0.00 0.00 0.00 3.69
6761 16553 8.827677 CCGACCTTATAAGTCCTTTAAAATCTG 58.172 37.037 11.50 0.00 0.00 2.90
6892 16720 2.594303 TCCCTGCAACCAAGCACG 60.594 61.111 0.00 0.00 40.11 5.34
6991 16819 0.881118 TCTCAATTGGCTTGCCGAAC 59.119 50.000 5.42 0.00 34.66 3.95
7202 17030 2.605366 GGCTAGAGTCAATCTTTCACGC 59.395 50.000 0.00 0.00 39.64 5.34
7230 17058 4.298103 ACATGAAAGTCCTGATCAAGCT 57.702 40.909 0.00 0.00 0.00 3.74
7231 17059 5.423015 TCTACATGAAAGTCCTGATCAAGC 58.577 41.667 0.00 0.00 0.00 4.01
7232 17060 8.396390 CAATTCTACATGAAAGTCCTGATCAAG 58.604 37.037 0.00 0.00 38.29 3.02
7254 17093 7.288810 TCTCAAATTGCCTCAACTTACAATT 57.711 32.000 0.00 0.00 42.81 2.32
7316 17155 7.693951 GCATGCTTGTAACTACACTTCAATAAG 59.306 37.037 11.37 0.00 35.64 1.73
7659 17498 3.053455 GGCGTCATAGACTCATAGCAAC 58.947 50.000 0.00 0.00 0.00 4.17
7660 17499 2.693074 TGGCGTCATAGACTCATAGCAA 59.307 45.455 0.00 0.00 0.00 3.91
7661 17500 2.294512 CTGGCGTCATAGACTCATAGCA 59.705 50.000 0.00 0.00 0.00 3.49
7662 17501 2.294791 ACTGGCGTCATAGACTCATAGC 59.705 50.000 0.00 0.00 0.00 2.97
7663 17502 3.565902 TGACTGGCGTCATAGACTCATAG 59.434 47.826 7.84 0.00 44.85 2.23
7664 17503 3.551846 TGACTGGCGTCATAGACTCATA 58.448 45.455 7.84 0.00 44.85 2.15
7665 17504 2.379005 TGACTGGCGTCATAGACTCAT 58.621 47.619 7.84 0.00 44.85 2.90
7666 17505 1.834188 TGACTGGCGTCATAGACTCA 58.166 50.000 7.84 0.00 44.85 3.41
7675 17514 1.033574 AGCTACCTATGACTGGCGTC 58.966 55.000 0.00 3.11 40.64 5.19
7677 17516 1.269998 GGTAGCTACCTATGACTGGCG 59.730 57.143 31.88 0.00 43.10 5.69
7678 17517 1.269998 CGGTAGCTACCTATGACTGGC 59.730 57.143 34.38 9.84 44.25 4.85
7680 17519 1.954382 TGCGGTAGCTACCTATGACTG 59.046 52.381 34.38 20.81 44.25 3.51
7681 17520 2.359981 TGCGGTAGCTACCTATGACT 57.640 50.000 34.38 0.00 44.25 3.41
7682 17521 2.740452 GTTGCGGTAGCTACCTATGAC 58.260 52.381 34.38 23.85 44.25 3.06
7762 17687 2.989909 TCACGATGGAAATCATGCACT 58.010 42.857 0.00 0.00 35.97 4.40
7799 17724 2.224450 TGTGATAGCATCTGGGCATCTG 60.224 50.000 0.00 0.00 35.83 2.90
7838 17763 1.482593 AGGTGAAAGGTGAGGCGATAG 59.517 52.381 0.00 0.00 0.00 2.08
7853 17784 3.810255 GGTACGGGGGAAAGGTGA 58.190 61.111 0.00 0.00 0.00 4.02
7884 17815 2.472934 CGTTTCCGCCTAACGCAC 59.527 61.111 0.00 0.00 41.37 5.34
7888 17819 1.995484 GGTAAGACGTTTCCGCCTAAC 59.005 52.381 0.00 0.00 37.70 2.34
7889 17820 1.895131 AGGTAAGACGTTTCCGCCTAA 59.105 47.619 0.00 0.00 37.70 2.69
7890 17821 1.474077 GAGGTAAGACGTTTCCGCCTA 59.526 52.381 0.00 0.00 37.70 3.93
7891 17822 0.245813 GAGGTAAGACGTTTCCGCCT 59.754 55.000 0.00 0.00 37.70 5.52
7892 17823 1.074872 CGAGGTAAGACGTTTCCGCC 61.075 60.000 0.00 0.00 37.70 6.13
7893 17824 0.109597 TCGAGGTAAGACGTTTCCGC 60.110 55.000 0.00 0.00 37.70 5.54
7894 17825 1.611043 GTCGAGGTAAGACGTTTCCG 58.389 55.000 0.00 0.00 40.83 4.30
7895 17826 1.543358 AGGTCGAGGTAAGACGTTTCC 59.457 52.381 0.00 0.00 39.38 3.13
7896 17827 2.227388 TCAGGTCGAGGTAAGACGTTTC 59.773 50.000 0.00 0.00 39.38 2.78
7897 17828 2.228343 CTCAGGTCGAGGTAAGACGTTT 59.772 50.000 0.00 0.00 39.38 3.60
7898 17829 1.811359 CTCAGGTCGAGGTAAGACGTT 59.189 52.381 0.00 0.00 39.38 3.99
7899 17830 1.451067 CTCAGGTCGAGGTAAGACGT 58.549 55.000 0.00 0.00 39.38 4.34
7908 17839 1.734477 CACGTTGCCTCAGGTCGAG 60.734 63.158 10.99 1.29 41.89 4.04
7909 17840 2.338620 CACGTTGCCTCAGGTCGA 59.661 61.111 10.99 0.00 0.00 4.20
7910 17841 3.414700 GCACGTTGCCTCAGGTCG 61.415 66.667 0.00 0.00 37.42 4.79
7911 17842 1.569479 GAAGCACGTTGCCTCAGGTC 61.569 60.000 0.00 0.00 46.52 3.85
7912 17843 1.598130 GAAGCACGTTGCCTCAGGT 60.598 57.895 0.00 0.00 46.52 4.00
7913 17844 2.671177 CGAAGCACGTTGCCTCAGG 61.671 63.158 6.39 0.00 46.52 3.86
7914 17845 2.856032 CGAAGCACGTTGCCTCAG 59.144 61.111 6.39 0.00 46.52 3.35
7924 17855 3.617263 CCCTGTCTATAAACACGAAGCAC 59.383 47.826 0.00 0.00 0.00 4.40
7925 17856 3.369052 CCCCTGTCTATAAACACGAAGCA 60.369 47.826 0.00 0.00 0.00 3.91
7926 17857 3.195661 CCCCTGTCTATAAACACGAAGC 58.804 50.000 0.00 0.00 0.00 3.86
7927 17858 3.195661 GCCCCTGTCTATAAACACGAAG 58.804 50.000 0.00 0.00 0.00 3.79
7928 17859 2.417651 CGCCCCTGTCTATAAACACGAA 60.418 50.000 0.00 0.00 0.00 3.85
7929 17860 1.135527 CGCCCCTGTCTATAAACACGA 59.864 52.381 0.00 0.00 0.00 4.35
7930 17861 1.567504 CGCCCCTGTCTATAAACACG 58.432 55.000 0.00 0.00 0.00 4.49
7931 17862 1.296727 GCGCCCCTGTCTATAAACAC 58.703 55.000 0.00 0.00 0.00 3.32
7932 17863 0.906066 TGCGCCCCTGTCTATAAACA 59.094 50.000 4.18 0.00 0.00 2.83
7933 17864 1.296727 GTGCGCCCCTGTCTATAAAC 58.703 55.000 4.18 0.00 0.00 2.01
7934 17865 0.906066 TGTGCGCCCCTGTCTATAAA 59.094 50.000 4.18 0.00 0.00 1.40
7935 17866 1.070134 GATGTGCGCCCCTGTCTATAA 59.930 52.381 4.18 0.00 0.00 0.98
7936 17867 0.679505 GATGTGCGCCCCTGTCTATA 59.320 55.000 4.18 0.00 0.00 1.31
7937 17868 1.447643 GATGTGCGCCCCTGTCTAT 59.552 57.895 4.18 0.00 0.00 1.98
7938 17869 2.731571 GGATGTGCGCCCCTGTCTA 61.732 63.158 4.18 0.00 0.00 2.59
7939 17870 4.101448 GGATGTGCGCCCCTGTCT 62.101 66.667 4.18 0.00 0.00 3.41
7945 17876 2.825836 CTTCAGGGATGTGCGCCC 60.826 66.667 4.18 0.00 46.40 6.13
7946 17877 3.512516 GCTTCAGGGATGTGCGCC 61.513 66.667 4.18 0.00 0.00 6.53
7947 17878 3.869272 CGCTTCAGGGATGTGCGC 61.869 66.667 0.00 0.00 40.15 6.09
7949 17880 0.815213 TATGCGCTTCAGGGATGTGC 60.815 55.000 9.73 9.80 41.47 4.57
7950 17881 0.940126 GTATGCGCTTCAGGGATGTG 59.060 55.000 9.73 0.00 0.00 3.21
7951 17882 0.541392 TGTATGCGCTTCAGGGATGT 59.459 50.000 9.73 0.00 0.00 3.06
7952 17883 1.888215 ATGTATGCGCTTCAGGGATG 58.112 50.000 9.73 0.00 0.00 3.51
7953 17884 2.224606 CAATGTATGCGCTTCAGGGAT 58.775 47.619 9.73 0.00 0.00 3.85
7954 17885 1.065491 ACAATGTATGCGCTTCAGGGA 60.065 47.619 9.73 0.00 0.00 4.20
7955 17886 1.382522 ACAATGTATGCGCTTCAGGG 58.617 50.000 9.73 4.39 0.00 4.45
7956 17887 2.478370 CCAACAATGTATGCGCTTCAGG 60.478 50.000 9.73 4.72 0.00 3.86
7957 17888 2.419673 TCCAACAATGTATGCGCTTCAG 59.580 45.455 9.73 0.00 0.00 3.02
7958 17889 2.419673 CTCCAACAATGTATGCGCTTCA 59.580 45.455 9.73 5.53 0.00 3.02
7959 17890 2.677836 TCTCCAACAATGTATGCGCTTC 59.322 45.455 9.73 0.00 0.00 3.86
7960 17891 2.710377 TCTCCAACAATGTATGCGCTT 58.290 42.857 9.73 4.59 0.00 4.68
7961 17892 2.401583 TCTCCAACAATGTATGCGCT 57.598 45.000 9.73 0.00 0.00 5.92
7962 17893 5.362556 AATATCTCCAACAATGTATGCGC 57.637 39.130 0.00 0.00 0.00 6.09
7963 17894 7.360353 CCTGTAATATCTCCAACAATGTATGCG 60.360 40.741 0.00 0.00 0.00 4.73
7964 17895 7.661437 TCCTGTAATATCTCCAACAATGTATGC 59.339 37.037 0.00 0.00 0.00 3.14
7965 17896 9.212641 CTCCTGTAATATCTCCAACAATGTATG 57.787 37.037 0.00 0.00 0.00 2.39
7966 17897 8.378565 CCTCCTGTAATATCTCCAACAATGTAT 58.621 37.037 0.00 0.00 0.00 2.29
7967 17898 7.689313 GCCTCCTGTAATATCTCCAACAATGTA 60.689 40.741 0.00 0.00 0.00 2.29
7968 17899 6.595682 CCTCCTGTAATATCTCCAACAATGT 58.404 40.000 0.00 0.00 0.00 2.71
7969 17900 5.471456 GCCTCCTGTAATATCTCCAACAATG 59.529 44.000 0.00 0.00 0.00 2.82
7970 17901 5.132648 TGCCTCCTGTAATATCTCCAACAAT 59.867 40.000 0.00 0.00 0.00 2.71
7971 17902 4.473196 TGCCTCCTGTAATATCTCCAACAA 59.527 41.667 0.00 0.00 0.00 2.83
7972 17903 4.037222 TGCCTCCTGTAATATCTCCAACA 58.963 43.478 0.00 0.00 0.00 3.33
7973 17904 4.503991 CCTGCCTCCTGTAATATCTCCAAC 60.504 50.000 0.00 0.00 0.00 3.77
7974 17905 3.648067 CCTGCCTCCTGTAATATCTCCAA 59.352 47.826 0.00 0.00 0.00 3.53
7975 17906 3.116746 TCCTGCCTCCTGTAATATCTCCA 60.117 47.826 0.00 0.00 0.00 3.86
7976 17907 3.511477 TCCTGCCTCCTGTAATATCTCC 58.489 50.000 0.00 0.00 0.00 3.71
7977 17908 3.513515 CCTCCTGCCTCCTGTAATATCTC 59.486 52.174 0.00 0.00 0.00 2.75
7978 17909 3.116551 ACCTCCTGCCTCCTGTAATATCT 60.117 47.826 0.00 0.00 0.00 1.98
7979 17910 3.243724 ACCTCCTGCCTCCTGTAATATC 58.756 50.000 0.00 0.00 0.00 1.63
7980 17911 3.352611 ACCTCCTGCCTCCTGTAATAT 57.647 47.619 0.00 0.00 0.00 1.28
7981 17912 2.868964 ACCTCCTGCCTCCTGTAATA 57.131 50.000 0.00 0.00 0.00 0.98
7982 17913 1.972588 AACCTCCTGCCTCCTGTAAT 58.027 50.000 0.00 0.00 0.00 1.89
7983 17914 1.742308 AAACCTCCTGCCTCCTGTAA 58.258 50.000 0.00 0.00 0.00 2.41
7984 17915 2.043939 TCTAAACCTCCTGCCTCCTGTA 59.956 50.000 0.00 0.00 0.00 2.74
7985 17916 1.203313 TCTAAACCTCCTGCCTCCTGT 60.203 52.381 0.00 0.00 0.00 4.00
7986 17917 1.573108 TCTAAACCTCCTGCCTCCTG 58.427 55.000 0.00 0.00 0.00 3.86
7987 17918 1.909986 GTTCTAAACCTCCTGCCTCCT 59.090 52.381 0.00 0.00 0.00 3.69
7988 17919 1.909986 AGTTCTAAACCTCCTGCCTCC 59.090 52.381 0.00 0.00 0.00 4.30
7989 17920 3.339141 CAAGTTCTAAACCTCCTGCCTC 58.661 50.000 0.00 0.00 0.00 4.70
7990 17921 2.040412 CCAAGTTCTAAACCTCCTGCCT 59.960 50.000 0.00 0.00 0.00 4.75
7991 17922 2.039879 TCCAAGTTCTAAACCTCCTGCC 59.960 50.000 0.00 0.00 0.00 4.85
7992 17923 3.008049 TCTCCAAGTTCTAAACCTCCTGC 59.992 47.826 0.00 0.00 0.00 4.85
7993 17924 4.891992 TCTCCAAGTTCTAAACCTCCTG 57.108 45.455 0.00 0.00 0.00 3.86
7994 17925 4.658901 TGTTCTCCAAGTTCTAAACCTCCT 59.341 41.667 0.00 0.00 0.00 3.69
7995 17926 4.969484 TGTTCTCCAAGTTCTAAACCTCC 58.031 43.478 0.00 0.00 0.00 4.30
7996 17927 6.546972 CTTGTTCTCCAAGTTCTAAACCTC 57.453 41.667 0.00 0.00 44.64 3.85
8009 17940 9.832445 GTAACCAATTATATCTCTTGTTCTCCA 57.168 33.333 0.00 0.00 0.00 3.86
8010 17941 9.832445 TGTAACCAATTATATCTCTTGTTCTCC 57.168 33.333 0.00 0.00 0.00 3.71
8025 17956 9.488762 TCTCTCCTTATCTCTTGTAACCAATTA 57.511 33.333 0.00 0.00 0.00 1.40
8026 17957 8.380742 TCTCTCCTTATCTCTTGTAACCAATT 57.619 34.615 0.00 0.00 0.00 2.32
8027 17958 7.979786 TCTCTCCTTATCTCTTGTAACCAAT 57.020 36.000 0.00 0.00 0.00 3.16
8028 17959 7.979786 ATCTCTCCTTATCTCTTGTAACCAA 57.020 36.000 0.00 0.00 0.00 3.67
8061 17992 9.594936 AGATAGGATAGCTAGTTTGAGTTACAT 57.405 33.333 0.00 0.00 34.19 2.29
8062 17993 8.998277 AGATAGGATAGCTAGTTTGAGTTACA 57.002 34.615 0.00 0.00 34.19 2.41
8063 17994 9.902196 GAAGATAGGATAGCTAGTTTGAGTTAC 57.098 37.037 0.00 0.00 35.43 2.50
8064 17995 9.080097 GGAAGATAGGATAGCTAGTTTGAGTTA 57.920 37.037 0.00 0.00 35.43 2.24
8065 17996 7.015779 GGGAAGATAGGATAGCTAGTTTGAGTT 59.984 40.741 0.00 0.00 35.43 3.01
8066 17997 6.495526 GGGAAGATAGGATAGCTAGTTTGAGT 59.504 42.308 0.00 0.00 35.43 3.41
8067 17998 6.723977 AGGGAAGATAGGATAGCTAGTTTGAG 59.276 42.308 0.00 0.00 35.43 3.02
8068 17999 6.495181 CAGGGAAGATAGGATAGCTAGTTTGA 59.505 42.308 0.00 0.00 35.43 2.69
8069 18000 6.295575 CCAGGGAAGATAGGATAGCTAGTTTG 60.296 46.154 0.00 0.00 35.43 2.93
8070 18001 5.782845 CCAGGGAAGATAGGATAGCTAGTTT 59.217 44.000 0.00 0.00 35.43 2.66
8071 18002 5.076598 TCCAGGGAAGATAGGATAGCTAGTT 59.923 44.000 0.00 0.00 35.43 2.24
8072 18003 4.608473 TCCAGGGAAGATAGGATAGCTAGT 59.392 45.833 0.00 0.00 35.43 2.57
8073 18004 5.199982 TCCAGGGAAGATAGGATAGCTAG 57.800 47.826 0.00 0.00 35.43 3.42
8074 18005 5.341285 GGATCCAGGGAAGATAGGATAGCTA 60.341 48.000 6.95 0.00 35.43 3.32
8075 18006 4.573955 GGATCCAGGGAAGATAGGATAGCT 60.574 50.000 6.95 0.00 40.30 3.32
8076 18007 3.709141 GGATCCAGGGAAGATAGGATAGC 59.291 52.174 6.95 0.00 40.80 2.97
8077 18008 4.961730 CAGGATCCAGGGAAGATAGGATAG 59.038 50.000 15.82 0.00 40.80 2.08
8078 18009 4.819426 GCAGGATCCAGGGAAGATAGGATA 60.819 50.000 15.82 0.00 40.80 2.59
8079 18010 3.800924 CAGGATCCAGGGAAGATAGGAT 58.199 50.000 15.82 0.00 43.29 3.24
8080 18011 2.761416 GCAGGATCCAGGGAAGATAGGA 60.761 54.545 15.82 0.00 34.12 2.94
8081 18012 1.627834 GCAGGATCCAGGGAAGATAGG 59.372 57.143 15.82 0.00 0.00 2.57
8082 18013 1.274728 CGCAGGATCCAGGGAAGATAG 59.725 57.143 15.82 0.00 0.00 2.08
8083 18014 1.342074 CGCAGGATCCAGGGAAGATA 58.658 55.000 15.82 0.00 0.00 1.98
8084 18015 2.049627 GCGCAGGATCCAGGGAAGAT 62.050 60.000 23.20 0.00 0.00 2.40
8085 18016 2.735772 GCGCAGGATCCAGGGAAGA 61.736 63.158 23.20 0.00 0.00 2.87
8086 18017 2.203126 GCGCAGGATCCAGGGAAG 60.203 66.667 23.20 5.50 0.00 3.46
8087 18018 3.797353 GGCGCAGGATCCAGGGAA 61.797 66.667 23.20 0.00 0.00 3.97
8088 18019 4.804420 AGGCGCAGGATCCAGGGA 62.804 66.667 23.20 0.00 0.00 4.20
8089 18020 4.247380 GAGGCGCAGGATCCAGGG 62.247 72.222 15.82 15.88 0.00 4.45
8090 18021 2.739996 AAGAGGCGCAGGATCCAGG 61.740 63.158 15.82 6.81 0.00 4.45
8091 18022 1.523258 CAAGAGGCGCAGGATCCAG 60.523 63.158 15.82 7.25 0.00 3.86
8092 18023 2.586245 CAAGAGGCGCAGGATCCA 59.414 61.111 15.82 0.00 0.00 3.41
8093 18024 2.203126 CCAAGAGGCGCAGGATCC 60.203 66.667 10.83 2.48 0.00 3.36
8094 18025 1.522580 GTCCAAGAGGCGCAGGATC 60.523 63.158 10.83 0.80 31.91 3.36
8095 18026 1.965754 GAGTCCAAGAGGCGCAGGAT 61.966 60.000 10.83 0.00 31.91 3.24
8096 18027 2.604686 AGTCCAAGAGGCGCAGGA 60.605 61.111 10.83 5.12 33.74 3.86
8097 18028 2.125350 GAGTCCAAGAGGCGCAGG 60.125 66.667 10.83 2.41 33.74 4.85
8098 18029 1.447489 CAGAGTCCAAGAGGCGCAG 60.447 63.158 10.83 0.00 33.74 5.18
8099 18030 2.159819 GACAGAGTCCAAGAGGCGCA 62.160 60.000 10.83 0.00 33.74 6.09
8100 18031 1.446966 GACAGAGTCCAAGAGGCGC 60.447 63.158 0.00 0.00 33.74 6.53
8101 18032 0.534412 ATGACAGAGTCCAAGAGGCG 59.466 55.000 0.00 0.00 33.74 5.52
8102 18033 2.480416 CGTATGACAGAGTCCAAGAGGC 60.480 54.545 0.00 0.00 33.74 4.70
8103 18034 2.755655 ACGTATGACAGAGTCCAAGAGG 59.244 50.000 0.00 0.00 0.00 3.69
8104 18035 3.440522 TCACGTATGACAGAGTCCAAGAG 59.559 47.826 0.00 0.00 0.00 2.85
8105 18036 3.418047 TCACGTATGACAGAGTCCAAGA 58.582 45.455 0.00 0.00 0.00 3.02
8106 18037 3.850122 TCACGTATGACAGAGTCCAAG 57.150 47.619 0.00 0.00 0.00 3.61
8149 18080 5.163077 TGTGATTAAGGGAGGGTGTTAAACA 60.163 40.000 0.00 0.00 0.00 2.83
8150 18081 5.318630 TGTGATTAAGGGAGGGTGTTAAAC 58.681 41.667 0.00 0.00 0.00 2.01
8151 18082 5.586155 TGTGATTAAGGGAGGGTGTTAAA 57.414 39.130 0.00 0.00 0.00 1.52
8152 18083 5.073965 AGTTGTGATTAAGGGAGGGTGTTAA 59.926 40.000 0.00 0.00 0.00 2.01
8153 18084 4.600111 AGTTGTGATTAAGGGAGGGTGTTA 59.400 41.667 0.00 0.00 0.00 2.41
8154 18085 3.397955 AGTTGTGATTAAGGGAGGGTGTT 59.602 43.478 0.00 0.00 0.00 3.32
8155 18086 2.986728 AGTTGTGATTAAGGGAGGGTGT 59.013 45.455 0.00 0.00 0.00 4.16
8156 18087 3.721087 AGTTGTGATTAAGGGAGGGTG 57.279 47.619 0.00 0.00 0.00 4.61
8157 18088 3.655777 TGAAGTTGTGATTAAGGGAGGGT 59.344 43.478 0.00 0.00 0.00 4.34
8158 18089 4.301072 TGAAGTTGTGATTAAGGGAGGG 57.699 45.455 0.00 0.00 0.00 4.30
8159 18090 5.500234 TGATGAAGTTGTGATTAAGGGAGG 58.500 41.667 0.00 0.00 0.00 4.30
8160 18091 6.656693 ACTTGATGAAGTTGTGATTAAGGGAG 59.343 38.462 0.00 0.00 39.56 4.30
8161 18092 6.542821 ACTTGATGAAGTTGTGATTAAGGGA 58.457 36.000 0.00 0.00 39.56 4.20
8162 18093 6.824305 ACTTGATGAAGTTGTGATTAAGGG 57.176 37.500 0.00 0.00 39.56 3.95
8174 18105 7.823745 AAACATAACCTCAACTTGATGAAGT 57.176 32.000 0.00 0.00 44.79 3.01
8177 18108 9.349713 ACTTTAAACATAACCTCAACTTGATGA 57.650 29.630 1.46 0.00 0.00 2.92
8178 18109 9.612620 GACTTTAAACATAACCTCAACTTGATG 57.387 33.333 0.00 0.00 0.00 3.07
8179 18110 9.574516 AGACTTTAAACATAACCTCAACTTGAT 57.425 29.630 0.00 0.00 0.00 2.57
8180 18111 8.974060 AGACTTTAAACATAACCTCAACTTGA 57.026 30.769 0.00 0.00 0.00 3.02
8181 18112 9.665264 GAAGACTTTAAACATAACCTCAACTTG 57.335 33.333 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.