Multiple sequence alignment - TraesCS6A01G099900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G099900 chr6A 100.000 4828 0 0 557 5384 67378626 67373799 0.000000e+00 8916
1 TraesCS6A01G099900 chr6A 96.503 143 4 1 2107 2248 67377043 67376901 9.020000e-58 235
2 TraesCS6A01G099900 chr6A 96.503 143 4 1 2140 2282 67377076 67376935 9.020000e-58 235
3 TraesCS6A01G099900 chr6A 100.000 127 0 0 1 127 67379182 67379056 9.020000e-58 235
4 TraesCS6A01G099900 chr6A 95.413 109 4 1 2107 2214 67377009 67376901 7.170000e-39 172
5 TraesCS6A01G099900 chr6A 95.413 109 4 1 2174 2282 67377076 67376969 7.170000e-39 172
6 TraesCS6A01G099900 chr6A 95.890 73 2 1 2107 2178 67376975 67376903 3.410000e-22 117
7 TraesCS6A01G099900 chr6A 95.890 73 2 1 2208 2280 67377076 67377005 3.410000e-22 117
8 TraesCS6A01G099900 chr6B 92.408 2595 148 23 2242 4800 123749924 123747343 0.000000e+00 3655
9 TraesCS6A01G099900 chr6B 91.916 1435 64 19 729 2146 123751283 123749884 0.000000e+00 1960
10 TraesCS6A01G099900 chr6B 89.516 496 24 14 4910 5384 123746732 123746244 2.150000e-168 603
11 TraesCS6A01G099900 chr6B 93.976 83 5 0 649 731 123751395 123751313 5.660000e-25 126
12 TraesCS6A01G099900 chr6D 92.378 2506 138 21 2140 4622 47789819 47792294 0.000000e+00 3520
13 TraesCS6A01G099900 chr6D 90.735 1673 71 37 630 2248 47788319 47789961 0.000000e+00 2154
14 TraesCS6A01G099900 chr6D 90.600 500 30 12 4889 5384 47804254 47804740 0.000000e+00 647
15 TraesCS6A01G099900 chr6D 83.200 250 30 11 4599 4844 47792340 47792581 9.080000e-53 219
16 TraesCS6A01G099900 chr6D 95.413 109 5 0 2174 2282 47789819 47789927 1.990000e-39 174
17 TraesCS6A01G099900 chr6D 95.413 109 4 1 2107 2214 47789853 47789961 7.170000e-39 172
18 TraesCS6A01G099900 chr6D 95.890 73 2 1 2107 2178 47789887 47789959 3.410000e-22 117
19 TraesCS6A01G099900 chr5B 89.394 330 35 0 5038 5367 437925358 437925687 3.000000e-112 416
20 TraesCS6A01G099900 chr5D 87.179 351 43 1 5029 5379 369305642 369305990 1.090000e-106 398
21 TraesCS6A01G099900 chr5A 86.970 330 42 1 5038 5367 471707837 471708165 2.370000e-98 370
22 TraesCS6A01G099900 chr3A 75.875 257 50 9 5126 5379 740883014 740882767 2.630000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G099900 chr6A 67373799 67379182 5383 True 1274.875000 8916 96.9515 1 5384 8 chr6A.!!$R1 5383
1 TraesCS6A01G099900 chr6B 123746244 123751395 5151 True 1586.000000 3655 91.9540 649 5384 4 chr6B.!!$R1 4735
2 TraesCS6A01G099900 chr6D 47788319 47792581 4262 False 1059.333333 3520 92.1715 630 4844 6 chr6D.!!$F2 4214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.109919 GGGCGAAACCGTTTGTGATC 60.110 55.0 0.00 0.00 40.62 2.92 F
27 28 0.109919 GGCGAAACCGTTTGTGATCC 60.110 55.0 0.00 0.00 0.00 3.36 F
107 108 0.250513 AAACCATGAGCTCCCGAGTC 59.749 55.0 12.15 0.00 0.00 3.36 F
1407 1463 0.390492 CTGCAGTCTGTGTCCAGTGA 59.610 55.0 5.25 0.00 39.82 3.41 F
1666 1723 0.600557 ACAAGAGAGGTGAGAGTGCG 59.399 55.0 0.00 0.00 0.00 5.34 F
2870 2951 0.320508 GGAACTCTGTGACCGTTCCC 60.321 60.0 14.00 1.94 46.88 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1429 0.175531 TGCAGCTCGGATCGAATCAA 59.824 50.000 0.00 0.0 34.74 2.57 R
1374 1430 0.249197 CTGCAGCTCGGATCGAATCA 60.249 55.000 0.00 0.0 34.74 2.57 R
2048 2107 1.808411 TGCATTTCCTCACGGAGAAC 58.192 50.000 2.84 0.0 41.25 3.01 R
2857 2938 1.825474 ACAGATAGGGAACGGTCACAG 59.175 52.381 5.02 0.0 0.00 3.66 R
3598 3680 1.176527 TACAGAAATGCAGGGCAAGC 58.823 50.000 0.00 0.0 43.62 4.01 R
4446 4553 0.108138 AGCCGATGTTGTGGTAGCTC 60.108 55.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.030415 AATTCAAGGGCGAAACCGT 57.970 47.368 0.00 0.00 40.62 4.83
20 21 1.324383 ATTCAAGGGCGAAACCGTTT 58.676 45.000 0.00 0.00 44.14 3.60
21 22 0.382515 TTCAAGGGCGAAACCGTTTG 59.617 50.000 0.00 0.00 44.14 2.93
22 23 0.748729 TCAAGGGCGAAACCGTTTGT 60.749 50.000 0.00 0.00 44.14 2.83
23 24 0.593773 CAAGGGCGAAACCGTTTGTG 60.594 55.000 0.00 0.00 44.14 3.33
24 25 0.748729 AAGGGCGAAACCGTTTGTGA 60.749 50.000 0.00 0.00 44.14 3.58
25 26 0.536460 AGGGCGAAACCGTTTGTGAT 60.536 50.000 0.00 0.00 40.62 3.06
26 27 0.109919 GGGCGAAACCGTTTGTGATC 60.110 55.000 0.00 0.00 40.62 2.92
27 28 0.109919 GGCGAAACCGTTTGTGATCC 60.110 55.000 0.00 0.00 0.00 3.36
28 29 0.589223 GCGAAACCGTTTGTGATCCA 59.411 50.000 0.00 0.00 0.00 3.41
29 30 1.399727 GCGAAACCGTTTGTGATCCAG 60.400 52.381 0.00 0.00 0.00 3.86
30 31 2.139917 CGAAACCGTTTGTGATCCAGA 58.860 47.619 0.00 0.00 0.00 3.86
31 32 2.742053 CGAAACCGTTTGTGATCCAGAT 59.258 45.455 0.00 0.00 0.00 2.90
32 33 3.424829 CGAAACCGTTTGTGATCCAGATG 60.425 47.826 0.00 0.00 0.00 2.90
33 34 3.417069 AACCGTTTGTGATCCAGATGA 57.583 42.857 0.00 0.00 0.00 2.92
34 35 3.417069 ACCGTTTGTGATCCAGATGAA 57.583 42.857 0.00 0.00 0.00 2.57
35 36 3.955471 ACCGTTTGTGATCCAGATGAAT 58.045 40.909 0.00 0.00 0.00 2.57
36 37 3.691118 ACCGTTTGTGATCCAGATGAATG 59.309 43.478 0.00 0.00 0.00 2.67
37 38 3.065786 CCGTTTGTGATCCAGATGAATGG 59.934 47.826 0.00 0.00 42.11 3.16
38 39 3.691118 CGTTTGTGATCCAGATGAATGGT 59.309 43.478 0.00 0.00 41.43 3.55
39 40 4.156556 CGTTTGTGATCCAGATGAATGGTT 59.843 41.667 0.00 0.00 41.43 3.67
40 41 5.335897 CGTTTGTGATCCAGATGAATGGTTT 60.336 40.000 0.00 0.00 41.43 3.27
41 42 6.128035 CGTTTGTGATCCAGATGAATGGTTTA 60.128 38.462 0.00 0.00 41.43 2.01
42 43 7.253422 GTTTGTGATCCAGATGAATGGTTTAG 58.747 38.462 0.00 0.00 41.43 1.85
43 44 6.312141 TGTGATCCAGATGAATGGTTTAGA 57.688 37.500 0.00 0.00 41.43 2.10
44 45 6.720309 TGTGATCCAGATGAATGGTTTAGAA 58.280 36.000 0.00 0.00 41.43 2.10
45 46 6.825213 TGTGATCCAGATGAATGGTTTAGAAG 59.175 38.462 0.00 0.00 41.43 2.85
46 47 7.050377 GTGATCCAGATGAATGGTTTAGAAGA 58.950 38.462 0.00 0.00 41.43 2.87
47 48 7.718753 GTGATCCAGATGAATGGTTTAGAAGAT 59.281 37.037 0.00 0.00 41.43 2.40
48 49 8.937835 TGATCCAGATGAATGGTTTAGAAGATA 58.062 33.333 0.00 0.00 41.43 1.98
49 50 9.956640 GATCCAGATGAATGGTTTAGAAGATAT 57.043 33.333 0.00 0.00 41.43 1.63
50 51 9.956640 ATCCAGATGAATGGTTTAGAAGATATC 57.043 33.333 0.00 0.00 41.43 1.63
51 52 9.163894 TCCAGATGAATGGTTTAGAAGATATCT 57.836 33.333 0.00 0.00 41.43 1.98
52 53 9.790344 CCAGATGAATGGTTTAGAAGATATCTT 57.210 33.333 17.96 17.96 36.24 2.40
70 71 9.985730 AGATATCTTCTTGTTTTGATTTTTGCA 57.014 25.926 0.00 0.00 0.00 4.08
73 74 6.717413 TCTTCTTGTTTTGATTTTTGCATGC 58.283 32.000 11.82 11.82 0.00 4.06
74 75 6.315642 TCTTCTTGTTTTGATTTTTGCATGCA 59.684 30.769 18.46 18.46 0.00 3.96
75 76 6.621316 TCTTGTTTTGATTTTTGCATGCAT 57.379 29.167 23.37 6.15 0.00 3.96
76 77 6.660722 TCTTGTTTTGATTTTTGCATGCATC 58.339 32.000 23.37 16.48 0.00 3.91
77 78 6.483974 TCTTGTTTTGATTTTTGCATGCATCT 59.516 30.769 23.37 6.36 0.00 2.90
78 79 6.230849 TGTTTTGATTTTTGCATGCATCTC 57.769 33.333 23.37 15.43 0.00 2.75
79 80 5.179742 TGTTTTGATTTTTGCATGCATCTCC 59.820 36.000 23.37 10.57 0.00 3.71
80 81 4.538746 TTGATTTTTGCATGCATCTCCA 57.461 36.364 23.37 13.05 0.00 3.86
81 82 3.852286 TGATTTTTGCATGCATCTCCAC 58.148 40.909 23.37 12.07 0.00 4.02
82 83 2.747396 TTTTTGCATGCATCTCCACC 57.253 45.000 23.37 0.00 0.00 4.61
83 84 1.927487 TTTTGCATGCATCTCCACCT 58.073 45.000 23.37 0.00 0.00 4.00
84 85 2.804986 TTTGCATGCATCTCCACCTA 57.195 45.000 23.37 0.00 0.00 3.08
85 86 2.336945 TTGCATGCATCTCCACCTAG 57.663 50.000 23.37 0.00 0.00 3.02
86 87 1.499368 TGCATGCATCTCCACCTAGA 58.501 50.000 18.46 0.00 0.00 2.43
87 88 1.839354 TGCATGCATCTCCACCTAGAA 59.161 47.619 18.46 0.00 0.00 2.10
88 89 2.239402 TGCATGCATCTCCACCTAGAAA 59.761 45.455 18.46 0.00 0.00 2.52
89 90 3.282021 GCATGCATCTCCACCTAGAAAA 58.718 45.455 14.21 0.00 0.00 2.29
90 91 3.696051 GCATGCATCTCCACCTAGAAAAA 59.304 43.478 14.21 0.00 0.00 1.94
91 92 4.439289 GCATGCATCTCCACCTAGAAAAAC 60.439 45.833 14.21 0.00 0.00 2.43
92 93 3.686016 TGCATCTCCACCTAGAAAAACC 58.314 45.455 0.00 0.00 0.00 3.27
93 94 3.073798 TGCATCTCCACCTAGAAAAACCA 59.926 43.478 0.00 0.00 0.00 3.67
94 95 4.263905 TGCATCTCCACCTAGAAAAACCAT 60.264 41.667 0.00 0.00 0.00 3.55
95 96 4.096984 GCATCTCCACCTAGAAAAACCATG 59.903 45.833 0.00 0.00 0.00 3.66
96 97 5.500234 CATCTCCACCTAGAAAAACCATGA 58.500 41.667 0.00 0.00 0.00 3.07
97 98 5.165961 TCTCCACCTAGAAAAACCATGAG 57.834 43.478 0.00 0.00 0.00 2.90
98 99 3.686016 TCCACCTAGAAAAACCATGAGC 58.314 45.455 0.00 0.00 0.00 4.26
99 100 3.330701 TCCACCTAGAAAAACCATGAGCT 59.669 43.478 0.00 0.00 0.00 4.09
100 101 3.691609 CCACCTAGAAAAACCATGAGCTC 59.308 47.826 6.82 6.82 0.00 4.09
101 102 3.691609 CACCTAGAAAAACCATGAGCTCC 59.308 47.826 12.15 0.00 0.00 4.70
102 103 3.282885 CCTAGAAAAACCATGAGCTCCC 58.717 50.000 12.15 0.00 0.00 4.30
103 104 1.826385 AGAAAAACCATGAGCTCCCG 58.174 50.000 12.15 1.44 0.00 5.14
104 105 1.351017 AGAAAAACCATGAGCTCCCGA 59.649 47.619 12.15 0.00 0.00 5.14
105 106 1.740025 GAAAAACCATGAGCTCCCGAG 59.260 52.381 12.15 0.00 0.00 4.63
106 107 0.693049 AAAACCATGAGCTCCCGAGT 59.307 50.000 12.15 0.29 0.00 4.18
107 108 0.250513 AAACCATGAGCTCCCGAGTC 59.749 55.000 12.15 0.00 0.00 3.36
108 109 1.617947 AACCATGAGCTCCCGAGTCC 61.618 60.000 12.15 0.00 0.00 3.85
109 110 2.801631 CCATGAGCTCCCGAGTCCC 61.802 68.421 12.15 0.00 0.00 4.46
110 111 2.835431 ATGAGCTCCCGAGTCCCG 60.835 66.667 12.15 0.00 38.18 5.14
111 112 3.360423 ATGAGCTCCCGAGTCCCGA 62.360 63.158 12.15 0.00 41.76 5.14
112 113 3.519930 GAGCTCCCGAGTCCCGAC 61.520 72.222 0.87 0.00 41.76 4.79
573 574 4.688770 GGGTTGTGGTTGTGGGAA 57.311 55.556 0.00 0.00 0.00 3.97
574 575 2.903404 GGGTTGTGGTTGTGGGAAA 58.097 52.632 0.00 0.00 0.00 3.13
575 576 1.196012 GGGTTGTGGTTGTGGGAAAA 58.804 50.000 0.00 0.00 0.00 2.29
576 577 1.134640 GGGTTGTGGTTGTGGGAAAAC 60.135 52.381 0.00 0.00 0.00 2.43
577 578 1.828595 GGTTGTGGTTGTGGGAAAACT 59.171 47.619 0.00 0.00 0.00 2.66
578 579 3.025262 GGTTGTGGTTGTGGGAAAACTA 58.975 45.455 0.00 0.00 0.00 2.24
579 580 3.447944 GGTTGTGGTTGTGGGAAAACTAA 59.552 43.478 0.00 0.00 0.00 2.24
580 581 4.426416 GTTGTGGTTGTGGGAAAACTAAC 58.574 43.478 0.00 0.00 0.00 2.34
581 582 3.025262 TGTGGTTGTGGGAAAACTAACC 58.975 45.455 0.00 0.00 40.83 2.85
582 583 3.025262 GTGGTTGTGGGAAAACTAACCA 58.975 45.455 0.00 0.00 46.04 3.67
583 584 3.917300 TGGTTGTGGGAAAACTAACCAT 58.083 40.909 0.00 0.00 44.08 3.55
584 585 4.290942 TGGTTGTGGGAAAACTAACCATT 58.709 39.130 0.00 0.00 44.08 3.16
585 586 4.717280 TGGTTGTGGGAAAACTAACCATTT 59.283 37.500 0.00 0.00 44.08 2.32
586 587 5.163395 TGGTTGTGGGAAAACTAACCATTTC 60.163 40.000 0.00 0.00 44.08 2.17
596 597 8.887036 GAAAACTAACCATTTCCAAGACAATT 57.113 30.769 0.00 0.00 30.98 2.32
597 598 9.974980 GAAAACTAACCATTTCCAAGACAATTA 57.025 29.630 0.00 0.00 30.98 1.40
598 599 9.981114 AAAACTAACCATTTCCAAGACAATTAG 57.019 29.630 0.00 0.00 0.00 1.73
599 600 7.703058 ACTAACCATTTCCAAGACAATTAGG 57.297 36.000 0.00 0.00 0.00 2.69
600 601 6.663523 ACTAACCATTTCCAAGACAATTAGGG 59.336 38.462 0.00 0.00 0.00 3.53
601 602 5.269554 ACCATTTCCAAGACAATTAGGGA 57.730 39.130 0.00 0.00 0.00 4.20
602 603 5.650283 ACCATTTCCAAGACAATTAGGGAA 58.350 37.500 0.00 0.00 35.93 3.97
603 604 5.716703 ACCATTTCCAAGACAATTAGGGAAG 59.283 40.000 0.00 0.00 38.72 3.46
604 605 5.716703 CCATTTCCAAGACAATTAGGGAAGT 59.283 40.000 0.00 0.00 38.72 3.01
605 606 6.211384 CCATTTCCAAGACAATTAGGGAAGTT 59.789 38.462 0.00 0.00 38.72 2.66
606 607 7.396055 CCATTTCCAAGACAATTAGGGAAGTTA 59.604 37.037 0.00 0.00 38.72 2.24
607 608 8.802267 CATTTCCAAGACAATTAGGGAAGTTAA 58.198 33.333 0.00 0.00 38.72 2.01
608 609 7.754851 TTCCAAGACAATTAGGGAAGTTAAC 57.245 36.000 0.00 0.00 32.95 2.01
609 610 7.086685 TCCAAGACAATTAGGGAAGTTAACT 57.913 36.000 1.12 1.12 0.00 2.24
610 611 7.523415 TCCAAGACAATTAGGGAAGTTAACTT 58.477 34.615 20.67 20.67 39.23 2.66
626 627 9.355215 GAAGTTAACTTCTTTCTACGATGATGA 57.645 33.333 32.01 0.00 46.59 2.92
627 628 9.877178 AAGTTAACTTCTTTCTACGATGATGAT 57.123 29.630 15.22 0.00 0.00 2.45
812 845 4.136051 TCCCACCGAAACGTTTTTCTTAT 58.864 39.130 15.89 0.00 39.29 1.73
857 890 0.465278 GCCAGAGCTCCCTCCAATTC 60.465 60.000 10.93 0.00 38.96 2.17
871 904 5.128919 CCTCCAATTCCAGATTTCTCGATT 58.871 41.667 0.00 0.00 0.00 3.34
898 932 5.904362 AATCATTTCTTTCCTCCCTTTCG 57.096 39.130 0.00 0.00 0.00 3.46
900 934 2.649531 TTTCTTTCCTCCCTTTCGCA 57.350 45.000 0.00 0.00 0.00 5.10
990 1046 4.507916 CCGGGGAGAGAGGAGCGA 62.508 72.222 0.00 0.00 0.00 4.93
991 1047 2.904866 CGGGGAGAGAGGAGCGAG 60.905 72.222 0.00 0.00 0.00 5.03
994 1050 2.826738 GGAGAGAGGAGCGAGCGT 60.827 66.667 0.00 0.00 0.00 5.07
1017 1073 0.534412 CGATGCTGAGGACCAAGACT 59.466 55.000 0.00 0.00 0.00 3.24
1167 1223 1.918800 CGTCACCCTCTTCCCCCTT 60.919 63.158 0.00 0.00 0.00 3.95
1177 1233 2.465055 CTTCCCCCTTTTCGCCGACT 62.465 60.000 0.00 0.00 0.00 4.18
1363 1419 6.462768 CCAGGATTTCTTCTGGTAGATCTCTG 60.463 46.154 0.00 0.00 44.03 3.35
1364 1420 6.323482 CAGGATTTCTTCTGGTAGATCTCTGA 59.677 42.308 0.00 0.00 0.00 3.27
1365 1421 7.015487 CAGGATTTCTTCTGGTAGATCTCTGAT 59.985 40.741 0.00 0.00 0.00 2.90
1366 1422 7.568366 AGGATTTCTTCTGGTAGATCTCTGATT 59.432 37.037 0.00 0.00 0.00 2.57
1367 1423 7.872483 GGATTTCTTCTGGTAGATCTCTGATTC 59.128 40.741 0.00 0.00 0.00 2.52
1368 1424 6.384258 TTCTTCTGGTAGATCTCTGATTCG 57.616 41.667 0.00 0.00 0.00 3.34
1369 1425 4.824537 TCTTCTGGTAGATCTCTGATTCGG 59.175 45.833 0.00 0.00 0.00 4.30
1370 1426 2.887783 TCTGGTAGATCTCTGATTCGGC 59.112 50.000 0.00 0.00 0.00 5.54
1371 1427 2.890311 CTGGTAGATCTCTGATTCGGCT 59.110 50.000 0.00 0.00 0.00 5.52
1372 1428 2.887783 TGGTAGATCTCTGATTCGGCTC 59.112 50.000 0.00 0.00 0.00 4.70
1373 1429 3.153919 GGTAGATCTCTGATTCGGCTCT 58.846 50.000 0.00 0.00 0.00 4.09
1374 1430 3.572255 GGTAGATCTCTGATTCGGCTCTT 59.428 47.826 0.00 0.00 0.00 2.85
1407 1463 0.390492 CTGCAGTCTGTGTCCAGTGA 59.610 55.000 5.25 0.00 39.82 3.41
1409 1465 0.676184 GCAGTCTGTGTCCAGTGAGA 59.324 55.000 0.93 0.00 39.82 3.27
1487 1543 1.227176 GGATTACCTCACGCCCGAC 60.227 63.158 0.00 0.00 0.00 4.79
1533 1590 1.455248 CGCCGATAAGGTGGGAAAAA 58.545 50.000 0.00 0.00 46.57 1.94
1662 1719 3.963129 AGAGGTACAAGAGAGGTGAGAG 58.037 50.000 0.00 0.00 0.00 3.20
1666 1723 0.600557 ACAAGAGAGGTGAGAGTGCG 59.399 55.000 0.00 0.00 0.00 5.34
1679 1736 1.802960 AGAGTGCGAATGCTCAAACTG 59.197 47.619 0.00 0.00 43.34 3.16
1681 1739 1.802960 AGTGCGAATGCTCAAACTGAG 59.197 47.619 0.00 0.00 46.90 3.35
1739 1798 5.067023 CCTCAAGATCCAGTTGCCTAAATTC 59.933 44.000 0.00 0.00 0.00 2.17
1774 1833 2.295602 TGCTCTGGCATCTGGCTCA 61.296 57.895 5.30 0.00 44.28 4.26
1780 1839 1.134367 CTGGCATCTGGCTCAATGTTG 59.866 52.381 5.30 0.00 44.01 3.33
1795 1854 9.301153 GGCTCAATGTTGTTGTATTAATAAAGG 57.699 33.333 0.00 0.00 0.00 3.11
1823 1882 2.691409 TGCTTACAGATTCTTCCCCG 57.309 50.000 0.00 0.00 0.00 5.73
2012 2071 1.679944 CCTCCACCGTGCATCAAGAAT 60.680 52.381 0.00 0.00 0.00 2.40
2048 2107 5.394663 GGACCCTCGGATAGATGATAATGTG 60.395 48.000 0.00 0.00 0.00 3.21
2053 2112 7.032580 CCTCGGATAGATGATAATGTGTTCTC 58.967 42.308 0.00 0.00 0.00 2.87
2106 2165 9.926158 ACATTTATGTGCTTGATGTTATTGAAA 57.074 25.926 0.00 0.00 40.03 2.69
2108 2167 9.926158 ATTTATGTGCTTGATGTTATTGAAACA 57.074 25.926 0.00 0.00 34.31 2.83
2109 2168 9.926158 TTTATGTGCTTGATGTTATTGAAACAT 57.074 25.926 3.15 3.15 42.98 2.71
2110 2169 7.821595 ATGTGCTTGATGTTATTGAAACATG 57.178 32.000 8.03 0.00 40.62 3.21
2111 2170 6.747125 TGTGCTTGATGTTATTGAAACATGT 58.253 32.000 8.03 0.00 40.62 3.21
2112 2171 7.208777 TGTGCTTGATGTTATTGAAACATGTT 58.791 30.769 4.92 4.92 40.62 2.71
2113 2172 7.381948 TGTGCTTGATGTTATTGAAACATGTTC 59.618 33.333 12.39 6.33 40.62 3.18
2114 2173 7.381948 GTGCTTGATGTTATTGAAACATGTTCA 59.618 33.333 12.39 8.91 40.62 3.18
2115 2174 8.089597 TGCTTGATGTTATTGAAACATGTTCAT 58.910 29.630 12.39 8.87 40.62 2.57
2116 2175 8.928733 GCTTGATGTTATTGAAACATGTTCATT 58.071 29.630 12.39 10.19 40.62 2.57
2119 2178 9.978044 TGATGTTATTGAAACATGTTCATTTCA 57.022 25.926 12.39 9.05 41.80 2.69
2121 2180 9.761504 ATGTTATTGAAACATGTTCATTTCACA 57.238 25.926 12.39 11.49 42.87 3.58
2122 2181 9.761504 TGTTATTGAAACATGTTCATTTCACAT 57.238 25.926 12.39 10.07 42.87 3.21
2124 2183 7.894376 ATTGAAACATGTTCATTTCACATCC 57.106 32.000 12.39 0.00 42.87 3.51
2125 2184 6.653526 TGAAACATGTTCATTTCACATCCT 57.346 33.333 12.39 0.00 39.34 3.24
2126 2185 7.053316 TGAAACATGTTCATTTCACATCCTT 57.947 32.000 12.39 0.00 39.34 3.36
2127 2186 7.147312 TGAAACATGTTCATTTCACATCCTTC 58.853 34.615 12.39 0.97 39.34 3.46
2128 2187 6.653526 AACATGTTCATTTCACATCCTTCA 57.346 33.333 4.92 0.00 32.25 3.02
2129 2188 6.653526 ACATGTTCATTTCACATCCTTCAA 57.346 33.333 0.00 0.00 32.25 2.69
2130 2189 7.053316 ACATGTTCATTTCACATCCTTCAAA 57.947 32.000 0.00 0.00 32.25 2.69
2131 2190 7.673180 ACATGTTCATTTCACATCCTTCAAAT 58.327 30.769 0.00 0.00 32.25 2.32
2132 2191 8.152246 ACATGTTCATTTCACATCCTTCAAATT 58.848 29.630 0.00 0.00 32.25 1.82
2133 2192 9.642327 CATGTTCATTTCACATCCTTCAAATTA 57.358 29.630 0.00 0.00 32.25 1.40
2135 2194 9.642327 TGTTCATTTCACATCCTTCAAATTATG 57.358 29.630 0.00 0.00 0.00 1.90
2136 2195 9.643693 GTTCATTTCACATCCTTCAAATTATGT 57.356 29.630 0.00 0.00 32.91 2.29
2178 2237 6.449635 TCCCTTCAAATTATGTGTACATGC 57.550 37.500 7.73 0.00 37.15 4.06
2185 2244 9.571810 TTCAAATTATGTGTACATGCTCATTTC 57.428 29.630 7.73 0.00 37.15 2.17
2270 2329 8.087750 TGTTCATTTCACATCCCTTCAAATTAC 58.912 33.333 0.00 0.00 0.00 1.89
2282 2341 7.160049 TCCCTTCAAATTACGTGTACATGTTA 58.840 34.615 24.98 17.04 0.00 2.41
2481 2541 8.427902 TGAGGTATGCTCTCATTAGATATTGT 57.572 34.615 0.00 0.00 36.46 2.71
2550 2628 5.114780 TGGGTCATGACAATTGTTTGTTTG 58.885 37.500 26.47 6.68 46.01 2.93
2564 2643 5.363101 TGTTTGTTTGCAGCAAATTGGATA 58.637 33.333 23.26 6.70 38.00 2.59
2619 2698 2.903135 GAGGATAGAGGGCTGCTTGTAT 59.097 50.000 0.00 0.00 0.00 2.29
2671 2750 6.095440 GCATAATGACATGGACAGGTAGTTTT 59.905 38.462 0.00 0.00 0.00 2.43
2675 2754 6.367374 TGACATGGACAGGTAGTTTTCATA 57.633 37.500 0.00 0.00 0.00 2.15
2866 2947 1.273606 CAGATGGAACTCTGTGACCGT 59.726 52.381 0.00 0.00 38.27 4.83
2870 2951 0.320508 GGAACTCTGTGACCGTTCCC 60.321 60.000 14.00 1.94 46.88 3.97
2951 3032 9.762381 ATCAGGTTGGTTTACTAATCCATTTTA 57.238 29.630 0.28 0.00 0.00 1.52
2979 3060 5.957842 TGTTGGTCAATGGTCAGTATTTC 57.042 39.130 0.00 0.00 0.00 2.17
2982 3063 5.957842 TGGTCAATGGTCAGTATTTCAAC 57.042 39.130 0.00 0.00 0.00 3.18
2990 3071 6.968263 TGGTCAGTATTTCAACCAAAATGA 57.032 33.333 0.00 0.00 38.80 2.57
3087 3168 3.211865 TCTTGGATTCATCATCTGCTGC 58.788 45.455 0.00 0.00 31.67 5.25
3104 3185 1.135527 CTGCTAACCACCCATGCATTG 59.864 52.381 0.00 0.00 33.02 2.82
3135 3216 9.996554 TTCATGTACACCTCACCTATTAATATG 57.003 33.333 0.00 0.00 0.00 1.78
3336 3417 6.808212 CACTTATTGATCGAAGTTTGGCAATT 59.192 34.615 0.00 0.00 33.60 2.32
3504 3585 3.625649 AGTCTCAGAGAGGGCAAAATC 57.374 47.619 0.00 0.00 0.00 2.17
3558 3639 5.652014 CCAGAGTTTAATCAAGGTATGGCAA 59.348 40.000 0.00 0.00 0.00 4.52
3598 3680 3.058224 CCCTTTCCAGCTGTTTACTTTCG 60.058 47.826 13.81 0.00 0.00 3.46
3599 3681 3.555518 CTTTCCAGCTGTTTACTTTCGC 58.444 45.455 13.81 0.00 0.00 4.70
3809 3905 5.107722 GCTAAAAGCTTAAAGTTTGCTGCTG 60.108 40.000 0.00 0.00 38.45 4.41
3907 4003 7.040617 GCAGTAGCATAATACACTAGTACCTCA 60.041 40.741 0.00 0.00 41.58 3.86
3955 4053 1.670971 ATGTCGACTGTTTACGCGCG 61.671 55.000 30.96 30.96 0.00 6.86
3990 4088 2.121564 CTTCCAGTGGTGCTTGTGCG 62.122 60.000 9.54 0.00 43.34 5.34
4067 4166 9.911788 ACTCATGACCATCATATAAAGAAAGTT 57.088 29.630 0.00 0.00 34.28 2.66
4104 4207 7.170393 ACTTCTTTCACCTTTAGCTTTGTTT 57.830 32.000 0.00 0.00 0.00 2.83
4113 4216 6.638468 CACCTTTAGCTTTGTTTCATTCAGTC 59.362 38.462 0.00 0.00 0.00 3.51
4128 4234 3.040147 TCAGTCGATTCTTTGGGTCAC 57.960 47.619 0.00 0.00 0.00 3.67
4131 4237 0.672401 TCGATTCTTTGGGTCACGGC 60.672 55.000 0.00 0.00 0.00 5.68
4138 4244 2.321263 TTTGGGTCACGGCCGTTACA 62.321 55.000 35.85 25.38 0.00 2.41
4153 4259 4.317839 GCCGTTACAATTACAGCTATGACG 60.318 45.833 0.00 0.00 0.00 4.35
4194 4300 2.068519 GCAATTGCTTGGCACCTTAAC 58.931 47.619 23.21 0.00 38.71 2.01
4195 4301 2.289010 GCAATTGCTTGGCACCTTAACT 60.289 45.455 23.21 0.00 38.71 2.24
4215 4321 6.360370 AACTAACTCTAGCATTCAAGTCCA 57.640 37.500 0.00 0.00 0.00 4.02
4224 4330 5.640189 AGCATTCAAGTCCAAGAAAGATG 57.360 39.130 0.00 0.00 0.00 2.90
4234 4341 3.264450 TCCAAGAAAGATGTCCTCCCTTC 59.736 47.826 0.00 0.00 0.00 3.46
4238 4345 4.369872 AGAAAGATGTCCTCCCTTCTGAT 58.630 43.478 0.00 0.00 29.60 2.90
4262 4369 3.428045 GGTATTTCACATGCTTGCTCACC 60.428 47.826 0.00 0.00 0.00 4.02
4269 4376 2.360475 GCTTGCTCACCCCCACTC 60.360 66.667 0.00 0.00 0.00 3.51
4336 4443 2.103373 CGTCTGGGAAAGAGATCCTGA 58.897 52.381 0.00 0.00 39.57 3.86
4347 4454 2.520120 AGAGATCCTGAGACACCCCATA 59.480 50.000 0.00 0.00 0.00 2.74
4387 4494 1.275291 CCTCGGCAAAGAAGTAGGACA 59.725 52.381 0.00 0.00 0.00 4.02
4390 4497 1.439679 GGCAAAGAAGTAGGACACCG 58.560 55.000 0.00 0.00 0.00 4.94
4400 4507 1.940883 TAGGACACCGCATCCGTCAC 61.941 60.000 0.00 0.00 41.52 3.67
4401 4508 2.813908 GACACCGCATCCGTCACC 60.814 66.667 0.00 0.00 0.00 4.02
4450 4557 4.711949 CCACCAGCCAAGCGAGCT 62.712 66.667 0.00 0.00 42.70 4.09
4452 4559 2.103042 CACCAGCCAAGCGAGCTAC 61.103 63.158 0.00 0.00 38.95 3.58
4585 4692 4.771590 TCTTAAGCTGTGAAGCCATTTG 57.228 40.909 0.00 0.00 34.90 2.32
4591 4698 1.007502 GTGAAGCCATTTGTGCGCA 60.008 52.632 5.66 5.66 0.00 6.09
4599 4706 0.109597 CATTTGTGCGCAGGGAACTC 60.110 55.000 12.22 0.00 40.21 3.01
4670 4839 0.678048 GTCTGGGGGTTGTGCATCTC 60.678 60.000 0.00 0.00 0.00 2.75
4720 4889 3.568007 TCTTCATTGGTTTGCTGGTGTAC 59.432 43.478 0.00 0.00 0.00 2.90
4726 4898 1.675552 GTTTGCTGGTGTACTGGTGT 58.324 50.000 0.00 0.00 0.00 4.16
4732 4904 0.913205 TGGTGTACTGGTGTTGTGGT 59.087 50.000 0.00 0.00 0.00 4.16
4736 4908 2.546789 GTGTACTGGTGTTGTGGTTAGC 59.453 50.000 0.00 0.00 0.00 3.09
4757 4929 2.161855 CTGCTTGACTGCCATTTGGTA 58.838 47.619 0.00 0.00 37.57 3.25
4765 4937 4.158209 TGACTGCCATTTGGTATTGTGATG 59.842 41.667 0.00 0.00 37.57 3.07
4766 4939 4.343231 ACTGCCATTTGGTATTGTGATGA 58.657 39.130 0.00 0.00 37.57 2.92
4776 4949 4.263683 TGGTATTGTGATGATTGTGTGGGA 60.264 41.667 0.00 0.00 0.00 4.37
4828 5346 2.363306 TCAGTTGGACTTGTGGCATT 57.637 45.000 0.00 0.00 0.00 3.56
4829 5347 2.665165 TCAGTTGGACTTGTGGCATTT 58.335 42.857 0.00 0.00 0.00 2.32
4832 5350 2.034558 AGTTGGACTTGTGGCATTTTCG 59.965 45.455 0.00 0.00 0.00 3.46
4837 5355 1.001378 ACTTGTGGCATTTTCGCAGTC 60.001 47.619 0.00 0.00 0.00 3.51
4848 5366 5.566016 GCATTTTCGCAGTCGTAAATAAACA 59.434 36.000 2.87 0.00 41.52 2.83
4856 5374 8.710551 TCGCAGTCGTAAATAAACAAGAATTTA 58.289 29.630 0.00 0.00 36.96 1.40
4880 5398 7.913674 AACATTTTTGCTTGTTTTTCACCTA 57.086 28.000 0.00 0.00 32.28 3.08
4884 5402 8.755018 CATTTTTGCTTGTTTTTCACCTAGTAG 58.245 33.333 0.00 0.00 0.00 2.57
4885 5403 7.399245 TTTTGCTTGTTTTTCACCTAGTAGT 57.601 32.000 0.00 0.00 0.00 2.73
4887 5405 8.685838 TTTGCTTGTTTTTCACCTAGTAGTAT 57.314 30.769 0.00 0.00 0.00 2.12
4888 5406 8.685838 TTGCTTGTTTTTCACCTAGTAGTATT 57.314 30.769 0.00 0.00 0.00 1.89
4890 5408 9.953565 TGCTTGTTTTTCACCTAGTAGTATTAT 57.046 29.630 0.00 0.00 0.00 1.28
4931 5606 3.055167 ACAGCACATGTACTATGAGGCAA 60.055 43.478 0.00 0.00 41.60 4.52
4935 5610 4.153117 GCACATGTACTATGAGGCAATAGC 59.847 45.833 0.00 0.00 41.10 2.97
4950 5625 5.349824 GCAATAGCCTACATTGAAGCTAC 57.650 43.478 8.47 0.00 40.41 3.58
4951 5626 5.059833 GCAATAGCCTACATTGAAGCTACT 58.940 41.667 8.47 0.00 40.41 2.57
4952 5627 5.049818 GCAATAGCCTACATTGAAGCTACTG 60.050 44.000 9.67 9.67 40.41 2.74
4953 5628 3.550437 AGCCTACATTGAAGCTACTGG 57.450 47.619 0.00 0.00 32.73 4.00
4959 5644 5.305644 CCTACATTGAAGCTACTGGTATCCT 59.694 44.000 0.00 0.00 0.00 3.24
4961 5646 5.431765 ACATTGAAGCTACTGGTATCCTTG 58.568 41.667 0.00 0.00 0.00 3.61
4974 5659 7.749666 ACTGGTATCCTTGCACTATGAAATAT 58.250 34.615 0.00 0.00 0.00 1.28
4975 5660 8.880244 ACTGGTATCCTTGCACTATGAAATATA 58.120 33.333 0.00 0.00 0.00 0.86
4976 5661 9.155975 CTGGTATCCTTGCACTATGAAATATAC 57.844 37.037 0.00 0.00 0.00 1.47
4977 5662 8.880244 TGGTATCCTTGCACTATGAAATATACT 58.120 33.333 0.00 0.00 0.00 2.12
4981 5666 9.935241 ATCCTTGCACTATGAAATATACTACAG 57.065 33.333 0.00 0.00 0.00 2.74
5000 5685 4.121317 ACAGTATGAACGAACGTCCAAAA 58.879 39.130 0.00 0.00 39.69 2.44
5008 5693 7.244166 TGAACGAACGTCCAAAACTAATTAA 57.756 32.000 0.00 0.00 0.00 1.40
5016 5701 7.197703 ACGTCCAAAACTAATTAACAAACCAG 58.802 34.615 0.00 0.00 0.00 4.00
5018 5703 6.422701 GTCCAAAACTAATTAACAAACCAGCC 59.577 38.462 0.00 0.00 0.00 4.85
5021 5706 4.120946 ACTAATTAACAAACCAGCCCCA 57.879 40.909 0.00 0.00 0.00 4.96
5022 5707 4.683643 ACTAATTAACAAACCAGCCCCAT 58.316 39.130 0.00 0.00 0.00 4.00
5023 5708 3.979101 AATTAACAAACCAGCCCCATG 57.021 42.857 0.00 0.00 0.00 3.66
5024 5709 2.390225 TTAACAAACCAGCCCCATGT 57.610 45.000 0.00 0.00 0.00 3.21
5025 5710 3.527507 TTAACAAACCAGCCCCATGTA 57.472 42.857 0.00 0.00 0.00 2.29
5027 5712 1.627864 ACAAACCAGCCCCATGTAAC 58.372 50.000 0.00 0.00 0.00 2.50
5028 5713 1.146982 ACAAACCAGCCCCATGTAACT 59.853 47.619 0.00 0.00 0.00 2.24
5029 5714 2.247358 CAAACCAGCCCCATGTAACTT 58.753 47.619 0.00 0.00 0.00 2.66
5032 5717 1.004745 ACCAGCCCCATGTAACTTCAG 59.995 52.381 0.00 0.00 0.00 3.02
5033 5718 1.281867 CCAGCCCCATGTAACTTCAGA 59.718 52.381 0.00 0.00 0.00 3.27
5055 5751 4.416516 ACGATCAGGTGTCCCATATCATA 58.583 43.478 0.00 0.00 0.00 2.15
5070 5766 0.590481 TCATAACGACGGCGATGACG 60.590 55.000 22.49 15.64 41.40 4.35
5216 5912 1.519455 CCATGGAGACGGCGAAGAC 60.519 63.158 16.62 1.19 0.00 3.01
5328 6024 4.093291 AAGCAGGAGAGCAGCGGG 62.093 66.667 0.00 0.00 36.85 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.324383 AACGGTTTCGCCCTTGAATT 58.676 45.000 0.00 0.00 40.63 2.17
1 2 1.000717 CAAACGGTTTCGCCCTTGAAT 60.001 47.619 2.51 0.00 40.63 2.57
2 3 0.382515 CAAACGGTTTCGCCCTTGAA 59.617 50.000 2.51 0.00 40.63 2.69
3 4 0.748729 ACAAACGGTTTCGCCCTTGA 60.749 50.000 2.51 0.00 40.63 3.02
4 5 0.593773 CACAAACGGTTTCGCCCTTG 60.594 55.000 2.51 0.00 40.63 3.61
5 6 0.748729 TCACAAACGGTTTCGCCCTT 60.749 50.000 2.51 0.00 40.63 3.95
6 7 0.536460 ATCACAAACGGTTTCGCCCT 60.536 50.000 2.51 0.00 40.63 5.19
7 8 0.109919 GATCACAAACGGTTTCGCCC 60.110 55.000 2.51 0.00 40.63 6.13
8 9 0.109919 GGATCACAAACGGTTTCGCC 60.110 55.000 2.51 0.00 40.63 5.54
9 10 0.589223 TGGATCACAAACGGTTTCGC 59.411 50.000 2.51 0.00 40.63 4.70
10 11 2.139917 TCTGGATCACAAACGGTTTCG 58.860 47.619 2.51 2.70 43.02 3.46
11 12 3.751175 TCATCTGGATCACAAACGGTTTC 59.249 43.478 2.51 0.00 0.00 2.78
12 13 3.750371 TCATCTGGATCACAAACGGTTT 58.250 40.909 0.00 0.00 0.00 3.27
13 14 3.417069 TCATCTGGATCACAAACGGTT 57.583 42.857 0.00 0.00 0.00 4.44
14 15 3.417069 TTCATCTGGATCACAAACGGT 57.583 42.857 0.00 0.00 0.00 4.83
15 16 3.065786 CCATTCATCTGGATCACAAACGG 59.934 47.826 0.00 0.00 38.69 4.44
16 17 3.691118 ACCATTCATCTGGATCACAAACG 59.309 43.478 0.00 0.00 39.73 3.60
17 18 5.649782 AACCATTCATCTGGATCACAAAC 57.350 39.130 0.00 0.00 39.73 2.93
18 19 7.174413 TCTAAACCATTCATCTGGATCACAAA 58.826 34.615 0.00 0.00 39.73 2.83
19 20 6.720309 TCTAAACCATTCATCTGGATCACAA 58.280 36.000 0.00 0.00 39.73 3.33
20 21 6.312141 TCTAAACCATTCATCTGGATCACA 57.688 37.500 0.00 0.00 39.73 3.58
21 22 7.050377 TCTTCTAAACCATTCATCTGGATCAC 58.950 38.462 0.00 0.00 39.73 3.06
22 23 7.199167 TCTTCTAAACCATTCATCTGGATCA 57.801 36.000 0.00 0.00 39.73 2.92
23 24 9.956640 ATATCTTCTAAACCATTCATCTGGATC 57.043 33.333 0.00 0.00 39.73 3.36
24 25 9.956640 GATATCTTCTAAACCATTCATCTGGAT 57.043 33.333 0.00 0.00 39.73 3.41
25 26 9.163894 AGATATCTTCTAAACCATTCATCTGGA 57.836 33.333 0.00 0.00 34.64 3.86
26 27 9.790344 AAGATATCTTCTAAACCATTCATCTGG 57.210 33.333 12.37 0.00 36.84 3.86
44 45 9.985730 TGCAAAAATCAAAACAAGAAGATATCT 57.014 25.926 0.00 0.00 41.32 1.98
47 48 8.497554 GCATGCAAAAATCAAAACAAGAAGATA 58.502 29.630 14.21 0.00 0.00 1.98
48 49 7.012515 TGCATGCAAAAATCAAAACAAGAAGAT 59.987 29.630 20.30 0.00 0.00 2.40
49 50 6.315642 TGCATGCAAAAATCAAAACAAGAAGA 59.684 30.769 20.30 0.00 0.00 2.87
50 51 6.487960 TGCATGCAAAAATCAAAACAAGAAG 58.512 32.000 20.30 0.00 0.00 2.85
51 52 6.432607 TGCATGCAAAAATCAAAACAAGAA 57.567 29.167 20.30 0.00 0.00 2.52
52 53 6.483974 AGATGCATGCAAAAATCAAAACAAGA 59.516 30.769 26.68 0.00 0.00 3.02
53 54 6.664515 AGATGCATGCAAAAATCAAAACAAG 58.335 32.000 26.68 0.00 0.00 3.16
54 55 6.293516 GGAGATGCATGCAAAAATCAAAACAA 60.294 34.615 26.68 0.00 0.00 2.83
55 56 5.179742 GGAGATGCATGCAAAAATCAAAACA 59.820 36.000 26.68 0.00 0.00 2.83
56 57 5.179742 TGGAGATGCATGCAAAAATCAAAAC 59.820 36.000 26.68 9.37 0.00 2.43
57 58 5.179742 GTGGAGATGCATGCAAAAATCAAAA 59.820 36.000 26.68 4.13 0.00 2.44
58 59 4.691685 GTGGAGATGCATGCAAAAATCAAA 59.308 37.500 26.68 9.36 0.00 2.69
59 60 4.247258 GTGGAGATGCATGCAAAAATCAA 58.753 39.130 26.68 10.87 0.00 2.57
60 61 3.368635 GGTGGAGATGCATGCAAAAATCA 60.369 43.478 26.68 16.05 0.00 2.57
61 62 3.118884 AGGTGGAGATGCATGCAAAAATC 60.119 43.478 26.68 17.58 0.00 2.17
62 63 2.835764 AGGTGGAGATGCATGCAAAAAT 59.164 40.909 26.68 8.07 0.00 1.82
63 64 2.250031 AGGTGGAGATGCATGCAAAAA 58.750 42.857 26.68 6.14 0.00 1.94
64 65 1.927487 AGGTGGAGATGCATGCAAAA 58.073 45.000 26.68 0.33 0.00 2.44
65 66 2.239402 TCTAGGTGGAGATGCATGCAAA 59.761 45.455 26.68 1.26 0.00 3.68
66 67 1.839354 TCTAGGTGGAGATGCATGCAA 59.161 47.619 26.68 4.34 0.00 4.08
67 68 1.499368 TCTAGGTGGAGATGCATGCA 58.501 50.000 25.04 25.04 0.00 3.96
68 69 2.627515 TTCTAGGTGGAGATGCATGC 57.372 50.000 11.82 11.82 0.00 4.06
69 70 4.096984 GGTTTTTCTAGGTGGAGATGCATG 59.903 45.833 2.46 0.00 0.00 4.06
70 71 4.263905 TGGTTTTTCTAGGTGGAGATGCAT 60.264 41.667 0.00 0.00 0.00 3.96
71 72 3.073798 TGGTTTTTCTAGGTGGAGATGCA 59.926 43.478 0.00 0.00 0.00 3.96
72 73 3.686016 TGGTTTTTCTAGGTGGAGATGC 58.314 45.455 0.00 0.00 0.00 3.91
73 74 5.500234 TCATGGTTTTTCTAGGTGGAGATG 58.500 41.667 0.00 0.00 0.00 2.90
74 75 5.749462 CTCATGGTTTTTCTAGGTGGAGAT 58.251 41.667 0.00 0.00 0.00 2.75
75 76 4.565652 GCTCATGGTTTTTCTAGGTGGAGA 60.566 45.833 0.00 0.00 0.00 3.71
76 77 3.691609 GCTCATGGTTTTTCTAGGTGGAG 59.308 47.826 0.00 0.00 0.00 3.86
77 78 3.330701 AGCTCATGGTTTTTCTAGGTGGA 59.669 43.478 0.00 0.00 0.00 4.02
78 79 3.690460 AGCTCATGGTTTTTCTAGGTGG 58.310 45.455 0.00 0.00 0.00 4.61
79 80 3.691609 GGAGCTCATGGTTTTTCTAGGTG 59.308 47.826 17.19 0.00 0.00 4.00
80 81 3.308473 GGGAGCTCATGGTTTTTCTAGGT 60.308 47.826 17.19 0.00 0.00 3.08
81 82 3.282885 GGGAGCTCATGGTTTTTCTAGG 58.717 50.000 17.19 0.00 0.00 3.02
82 83 2.939103 CGGGAGCTCATGGTTTTTCTAG 59.061 50.000 17.19 0.00 0.00 2.43
83 84 2.569853 TCGGGAGCTCATGGTTTTTCTA 59.430 45.455 17.19 0.00 0.00 2.10
84 85 1.351017 TCGGGAGCTCATGGTTTTTCT 59.649 47.619 17.19 0.00 0.00 2.52
85 86 1.740025 CTCGGGAGCTCATGGTTTTTC 59.260 52.381 17.19 0.00 0.00 2.29
86 87 1.073923 ACTCGGGAGCTCATGGTTTTT 59.926 47.619 17.19 0.00 0.00 1.94
87 88 0.693049 ACTCGGGAGCTCATGGTTTT 59.307 50.000 17.19 0.00 0.00 2.43
88 89 0.250513 GACTCGGGAGCTCATGGTTT 59.749 55.000 17.19 0.00 0.00 3.27
89 90 1.617947 GGACTCGGGAGCTCATGGTT 61.618 60.000 17.19 0.00 0.00 3.67
90 91 2.060980 GGACTCGGGAGCTCATGGT 61.061 63.158 17.19 8.24 0.00 3.55
91 92 2.801631 GGGACTCGGGAGCTCATGG 61.802 68.421 17.19 3.71 0.00 3.66
92 93 2.818132 GGGACTCGGGAGCTCATG 59.182 66.667 17.19 7.10 0.00 3.07
93 94 2.835431 CGGGACTCGGGAGCTCAT 60.835 66.667 17.19 0.00 34.75 2.90
94 95 4.043100 TCGGGACTCGGGAGCTCA 62.043 66.667 17.19 0.00 39.77 4.26
95 96 3.519930 GTCGGGACTCGGGAGCTC 61.520 72.222 4.71 4.71 39.77 4.09
556 557 1.134640 GTTTTCCCACAACCACAACCC 60.135 52.381 0.00 0.00 0.00 4.11
557 558 1.828595 AGTTTTCCCACAACCACAACC 59.171 47.619 0.00 0.00 0.00 3.77
558 559 4.426416 GTTAGTTTTCCCACAACCACAAC 58.574 43.478 0.00 0.00 0.00 3.32
559 560 3.447944 GGTTAGTTTTCCCACAACCACAA 59.552 43.478 0.00 0.00 38.79 3.33
560 561 3.025262 GGTTAGTTTTCCCACAACCACA 58.975 45.455 0.00 0.00 38.79 4.17
561 562 3.025262 TGGTTAGTTTTCCCACAACCAC 58.975 45.455 0.49 0.00 42.73 4.16
562 563 3.383698 TGGTTAGTTTTCCCACAACCA 57.616 42.857 0.49 0.49 44.76 3.67
563 564 4.948341 AATGGTTAGTTTTCCCACAACC 57.052 40.909 0.00 0.00 39.28 3.77
564 565 5.163395 TGGAAATGGTTAGTTTTCCCACAAC 60.163 40.000 10.91 0.00 46.79 3.32
565 566 4.962995 TGGAAATGGTTAGTTTTCCCACAA 59.037 37.500 10.91 0.00 46.79 3.33
566 567 4.547671 TGGAAATGGTTAGTTTTCCCACA 58.452 39.130 10.91 0.00 46.79 4.17
567 568 5.303333 TCTTGGAAATGGTTAGTTTTCCCAC 59.697 40.000 10.91 0.00 46.79 4.61
568 569 5.303333 GTCTTGGAAATGGTTAGTTTTCCCA 59.697 40.000 10.91 1.11 46.79 4.37
569 570 5.303333 TGTCTTGGAAATGGTTAGTTTTCCC 59.697 40.000 10.91 0.00 46.79 3.97
571 572 8.887036 AATTGTCTTGGAAATGGTTAGTTTTC 57.113 30.769 0.00 0.00 0.00 2.29
572 573 9.981114 CTAATTGTCTTGGAAATGGTTAGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
573 574 8.585018 CCTAATTGTCTTGGAAATGGTTAGTTT 58.415 33.333 0.00 0.00 0.00 2.66
574 575 7.178451 CCCTAATTGTCTTGGAAATGGTTAGTT 59.822 37.037 0.00 0.00 0.00 2.24
575 576 6.663523 CCCTAATTGTCTTGGAAATGGTTAGT 59.336 38.462 0.00 0.00 0.00 2.24
576 577 6.889722 TCCCTAATTGTCTTGGAAATGGTTAG 59.110 38.462 0.00 0.00 0.00 2.34
577 578 6.795590 TCCCTAATTGTCTTGGAAATGGTTA 58.204 36.000 0.00 0.00 0.00 2.85
578 579 5.650283 TCCCTAATTGTCTTGGAAATGGTT 58.350 37.500 0.00 0.00 0.00 3.67
579 580 5.269554 TCCCTAATTGTCTTGGAAATGGT 57.730 39.130 0.00 0.00 0.00 3.55
580 581 5.716703 ACTTCCCTAATTGTCTTGGAAATGG 59.283 40.000 0.00 0.00 34.85 3.16
581 582 6.840780 ACTTCCCTAATTGTCTTGGAAATG 57.159 37.500 0.00 0.00 34.85 2.32
582 583 8.803235 GTTAACTTCCCTAATTGTCTTGGAAAT 58.197 33.333 0.00 0.00 34.85 2.17
583 584 8.002459 AGTTAACTTCCCTAATTGTCTTGGAAA 58.998 33.333 1.12 0.00 34.85 3.13
584 585 7.523415 AGTTAACTTCCCTAATTGTCTTGGAA 58.477 34.615 1.12 0.00 34.15 3.53
585 586 7.086685 AGTTAACTTCCCTAATTGTCTTGGA 57.913 36.000 1.12 0.00 0.00 3.53
586 587 7.761038 AAGTTAACTTCCCTAATTGTCTTGG 57.239 36.000 15.22 0.00 0.00 3.61
600 601 9.355215 TCATCATCGTAGAAAGAAGTTAACTTC 57.645 33.333 32.18 32.18 46.54 3.01
601 602 9.877178 ATCATCATCGTAGAAAGAAGTTAACTT 57.123 29.630 20.67 20.67 43.58 2.66
606 607 9.906660 GAGATATCATCATCGTAGAAAGAAGTT 57.093 33.333 5.32 0.00 43.58 2.66
607 608 8.233868 CGAGATATCATCATCGTAGAAAGAAGT 58.766 37.037 5.32 0.00 43.58 3.01
608 609 8.233868 ACGAGATATCATCATCGTAGAAAGAAG 58.766 37.037 14.08 0.00 43.58 2.85
609 610 8.017946 CACGAGATATCATCATCGTAGAAAGAA 58.982 37.037 14.96 0.00 43.58 2.52
610 611 7.361286 CCACGAGATATCATCATCGTAGAAAGA 60.361 40.741 14.96 0.00 43.58 2.52
611 612 6.744993 CCACGAGATATCATCATCGTAGAAAG 59.255 42.308 14.96 5.42 43.58 2.62
612 613 6.206829 ACCACGAGATATCATCATCGTAGAAA 59.793 38.462 14.96 0.00 43.58 2.52
613 614 5.705905 ACCACGAGATATCATCATCGTAGAA 59.294 40.000 14.96 0.00 43.58 2.10
614 615 5.122396 CACCACGAGATATCATCATCGTAGA 59.878 44.000 14.96 0.00 39.40 2.59
615 616 5.122396 TCACCACGAGATATCATCATCGTAG 59.878 44.000 14.96 11.57 39.40 3.51
616 617 5.001232 TCACCACGAGATATCATCATCGTA 58.999 41.667 14.96 0.85 39.40 3.43
617 618 3.821033 TCACCACGAGATATCATCATCGT 59.179 43.478 10.88 10.88 40.84 3.73
618 619 4.425577 TCACCACGAGATATCATCATCG 57.574 45.455 5.32 7.94 36.61 3.84
619 620 5.575995 CACATCACCACGAGATATCATCATC 59.424 44.000 5.32 0.00 0.00 2.92
620 621 5.244626 TCACATCACCACGAGATATCATCAT 59.755 40.000 5.32 0.00 0.00 2.45
621 622 4.584325 TCACATCACCACGAGATATCATCA 59.416 41.667 5.32 0.00 0.00 3.07
622 623 5.126396 TCACATCACCACGAGATATCATC 57.874 43.478 5.32 0.00 0.00 2.92
623 624 5.735285 ATCACATCACCACGAGATATCAT 57.265 39.130 5.32 0.00 0.00 2.45
624 625 5.163416 ACAATCACATCACCACGAGATATCA 60.163 40.000 5.32 0.00 0.00 2.15
625 626 5.176406 CACAATCACATCACCACGAGATATC 59.824 44.000 0.00 0.00 0.00 1.63
626 627 5.052481 CACAATCACATCACCACGAGATAT 58.948 41.667 0.00 0.00 0.00 1.63
627 628 4.159506 TCACAATCACATCACCACGAGATA 59.840 41.667 0.00 0.00 0.00 1.98
628 629 3.055891 TCACAATCACATCACCACGAGAT 60.056 43.478 0.00 0.00 0.00 2.75
698 699 1.251251 GGCTGGACATGTCTGCTTTT 58.749 50.000 28.95 0.00 32.74 2.27
812 845 4.703897 CTGTGGCGGGAGAGATAATAAAA 58.296 43.478 0.00 0.00 0.00 1.52
871 904 9.996554 GAAAGGGAGGAAAGAAATGATTTTTAA 57.003 29.630 0.00 0.00 0.00 1.52
973 1007 4.507916 TCGCTCCTCTCTCCCCGG 62.508 72.222 0.00 0.00 0.00 5.73
976 1010 3.591835 CGCTCGCTCCTCTCTCCC 61.592 72.222 0.00 0.00 0.00 4.30
977 1011 2.826738 ACGCTCGCTCCTCTCTCC 60.827 66.667 0.00 0.00 0.00 3.71
979 1013 3.199190 CGACGCTCGCTCCTCTCT 61.199 66.667 0.00 0.00 31.14 3.10
990 1046 4.862092 CTCAGCATCGCCGACGCT 62.862 66.667 0.03 0.03 39.84 5.07
994 1050 3.838271 GGTCCTCAGCATCGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
1167 1223 3.894547 GAAGGGGCAGTCGGCGAAA 62.895 63.158 12.92 0.00 46.16 3.46
1363 1419 2.734079 GGATCGAATCAAGAGCCGAATC 59.266 50.000 0.00 0.00 34.29 2.52
1364 1420 2.760374 GGATCGAATCAAGAGCCGAAT 58.240 47.619 0.00 0.00 34.29 3.34
1365 1421 2.225068 GGATCGAATCAAGAGCCGAA 57.775 50.000 0.00 0.00 34.29 4.30
1366 1422 3.967886 GGATCGAATCAAGAGCCGA 57.032 52.632 0.00 0.00 34.29 5.54
1368 1424 1.777101 CTCGGATCGAATCAAGAGCC 58.223 55.000 0.00 0.00 40.52 4.70
1369 1425 1.135867 GCTCGGATCGAATCAAGAGC 58.864 55.000 18.45 18.45 46.29 4.09
1370 1426 2.392821 CAGCTCGGATCGAATCAAGAG 58.607 52.381 0.00 2.76 38.09 2.85
1371 1427 1.536922 GCAGCTCGGATCGAATCAAGA 60.537 52.381 0.00 0.00 34.74 3.02
1372 1428 0.857935 GCAGCTCGGATCGAATCAAG 59.142 55.000 0.00 0.00 34.74 3.02
1373 1429 0.175531 TGCAGCTCGGATCGAATCAA 59.824 50.000 0.00 0.00 34.74 2.57
1374 1430 0.249197 CTGCAGCTCGGATCGAATCA 60.249 55.000 0.00 0.00 34.74 2.57
1407 1463 4.521062 GCCCGAGATGCGCACTCT 62.521 66.667 26.30 22.68 39.11 3.24
1409 1465 2.721167 TTAGCCCGAGATGCGCACT 61.721 57.895 14.90 12.75 39.11 4.40
1527 1583 7.384932 CCCACACAAGAAAATATGTCTTTTTCC 59.615 37.037 5.52 0.00 41.74 3.13
1533 1590 7.888021 TGTAATCCCACACAAGAAAATATGTCT 59.112 33.333 0.00 0.00 0.00 3.41
1662 1719 2.238245 CTCAGTTTGAGCATTCGCAC 57.762 50.000 0.00 0.00 37.72 5.34
1679 1736 9.504708 AATGATGATTTCAGATCAATAGGACTC 57.495 33.333 0.00 0.00 37.89 3.36
1739 1798 4.035324 CAGAGCAAGCATATCAAACTCTGG 59.965 45.833 8.82 0.00 43.67 3.86
1765 1824 7.701539 TTAATACAACAACATTGAGCCAGAT 57.298 32.000 0.00 0.00 0.00 2.90
1766 1825 7.701539 ATTAATACAACAACATTGAGCCAGA 57.298 32.000 0.00 0.00 0.00 3.86
1767 1826 9.853555 TTTATTAATACAACAACATTGAGCCAG 57.146 29.630 0.00 0.00 0.00 4.85
1768 1827 9.853555 CTTTATTAATACAACAACATTGAGCCA 57.146 29.630 0.00 0.00 0.00 4.75
1769 1828 9.301153 CCTTTATTAATACAACAACATTGAGCC 57.699 33.333 0.00 0.00 0.00 4.70
1780 1839 8.764287 GCAATGGCAATCCTTTATTAATACAAC 58.236 33.333 0.00 0.00 40.72 3.32
1795 1854 5.511234 AGAATCTGTAAGCAATGGCAATC 57.489 39.130 0.00 0.00 44.61 2.67
1797 1856 4.158394 GGAAGAATCTGTAAGCAATGGCAA 59.842 41.667 0.00 0.00 44.61 4.52
1823 1882 1.954927 GGTCCATGGATCGACCTTTC 58.045 55.000 19.62 0.71 44.40 2.62
1829 1888 2.970987 TCCATTAGGTCCATGGATCGA 58.029 47.619 19.62 11.37 44.50 3.59
2012 2071 5.215266 TCCGAGGGTCCATATTATATGGA 57.785 43.478 25.30 25.30 45.24 3.41
2033 2092 7.371159 TCACGGAGAACACATTATCATCTATC 58.629 38.462 0.00 0.00 0.00 2.08
2048 2107 1.808411 TGCATTTCCTCACGGAGAAC 58.192 50.000 2.84 0.00 41.25 3.01
2053 2112 3.129113 TGATGATTTGCATTTCCTCACGG 59.871 43.478 0.00 0.00 37.34 4.94
2106 2165 6.653526 TTGAAGGATGTGAAATGAACATGT 57.346 33.333 0.00 0.00 38.37 3.21
2107 2166 8.542497 AATTTGAAGGATGTGAAATGAACATG 57.458 30.769 0.00 0.00 38.37 3.21
2109 2168 9.642327 CATAATTTGAAGGATGTGAAATGAACA 57.358 29.630 0.00 0.00 0.00 3.18
2110 2169 9.643693 ACATAATTTGAAGGATGTGAAATGAAC 57.356 29.630 0.00 0.00 31.41 3.18
2132 2191 9.283768 GGGATGTGAAATGAACATGTATACATA 57.716 33.333 17.86 3.31 38.37 2.29
2133 2192 8.000709 AGGGATGTGAAATGAACATGTATACAT 58.999 33.333 12.75 12.75 38.37 2.29
2134 2193 7.345691 AGGGATGTGAAATGAACATGTATACA 58.654 34.615 8.27 8.27 38.37 2.29
2135 2194 7.807977 AGGGATGTGAAATGAACATGTATAC 57.192 36.000 0.00 0.00 38.37 1.47
2136 2195 8.052141 TGAAGGGATGTGAAATGAACATGTATA 58.948 33.333 0.00 0.00 38.37 1.47
2137 2196 6.891361 TGAAGGGATGTGAAATGAACATGTAT 59.109 34.615 0.00 0.00 38.37 2.29
2138 2197 6.244654 TGAAGGGATGTGAAATGAACATGTA 58.755 36.000 0.00 0.00 38.37 2.29
2178 2237 8.472413 ACATAATTTGAAGGGATGTGAAATGAG 58.528 33.333 0.00 0.00 29.75 2.90
2282 2341 9.878599 GCAGTGATTATGCGTTATTAACTTTAT 57.121 29.630 5.11 0.27 33.31 1.40
2339 2398 7.686438 TTTTTGTGAGAAAGATGCTGCTATA 57.314 32.000 0.00 0.00 0.00 1.31
2441 2501 6.608405 AGCATACCTCAATTTCATGGAAATCA 59.392 34.615 4.81 0.00 40.77 2.57
2499 2577 8.532819 ACCTCCACAAAATGTAAAACTAAAACA 58.467 29.630 0.00 0.00 0.00 2.83
2550 2628 5.014808 AGTTTCCATATCCAATTTGCTGC 57.985 39.130 0.00 0.00 0.00 5.25
2564 2643 3.194005 ACACGACACTGAAGTTTCCAT 57.806 42.857 0.00 0.00 0.00 3.41
2619 2698 2.177394 TGATGCTCCGTTTTACTGCA 57.823 45.000 0.00 0.00 38.05 4.41
2764 2845 2.024414 CCTAAGGCCACCAAAGTATGC 58.976 52.381 5.01 0.00 0.00 3.14
2857 2938 1.825474 ACAGATAGGGAACGGTCACAG 59.175 52.381 5.02 0.00 0.00 3.66
2866 2947 2.777692 GTCCCCATTCACAGATAGGGAA 59.222 50.000 0.00 0.00 44.97 3.97
2870 2951 3.209410 GCTTGTCCCCATTCACAGATAG 58.791 50.000 0.00 0.00 0.00 2.08
3087 3168 2.159393 CGAACAATGCATGGGTGGTTAG 60.159 50.000 5.94 0.98 0.00 2.34
3104 3185 2.735134 GGTGAGGTGTACATGAACGAAC 59.265 50.000 0.00 0.00 0.00 3.95
3135 3216 2.821969 AGGTGCACATGAAAGAATGGTC 59.178 45.455 20.43 0.00 31.46 4.02
3336 3417 7.148641 GCATATAACGAGAATCTCCTTCTTCA 58.851 38.462 4.47 0.00 44.42 3.02
3504 3585 1.407437 GGGTGTCCTGGTAGCAATGAG 60.407 57.143 0.00 0.00 0.00 2.90
3558 3639 1.549203 GGAAAGCCACATGGTGATGT 58.451 50.000 0.00 0.00 44.08 3.06
3598 3680 1.176527 TACAGAAATGCAGGGCAAGC 58.823 50.000 0.00 0.00 43.62 4.01
3599 3681 2.360165 GGATACAGAAATGCAGGGCAAG 59.640 50.000 0.00 0.00 43.62 4.01
3772 3865 6.901081 AAGCTTTTAGCCACAGAAGTAAAT 57.099 33.333 0.00 0.00 43.77 1.40
3809 3905 6.365789 TGCTTCTGCATAAATTTTAGCAACAC 59.634 34.615 15.27 8.24 45.31 3.32
3907 4003 5.900123 AGTGCCAATAAGAGGTATCAGTAGT 59.100 40.000 0.00 0.00 0.00 2.73
3955 4053 3.146066 TGGAAGTGTTAGGATTGTGCAC 58.854 45.455 10.75 10.75 0.00 4.57
3990 4088 9.148104 AGATCGTGTTAGTGTTATAAAAAGGAC 57.852 33.333 0.00 0.00 0.00 3.85
4104 4207 4.253685 GACCCAAAGAATCGACTGAATGA 58.746 43.478 0.00 0.00 0.00 2.57
4113 4216 1.644786 GGCCGTGACCCAAAGAATCG 61.645 60.000 0.00 0.00 0.00 3.34
4128 4234 3.889780 GCTGTAATTGTAACGGCCG 57.110 52.632 26.86 26.86 42.30 6.13
4131 4237 4.802039 ACGTCATAGCTGTAATTGTAACGG 59.198 41.667 0.00 0.00 0.00 4.44
4138 4244 8.392372 TCTGTAGATACGTCATAGCTGTAATT 57.608 34.615 0.00 0.00 30.30 1.40
4153 4259 4.842029 GCAAATTGCAGCTCTGTAGATAC 58.158 43.478 13.73 0.00 44.26 2.24
4177 4283 4.407365 AGTTAGTTAAGGTGCCAAGCAAT 58.593 39.130 0.00 0.00 41.47 3.56
4194 4300 6.634805 TCTTGGACTTGAATGCTAGAGTTAG 58.365 40.000 0.00 0.00 0.00 2.34
4195 4301 6.605471 TCTTGGACTTGAATGCTAGAGTTA 57.395 37.500 0.00 0.00 0.00 2.24
4215 4321 4.171234 TCAGAAGGGAGGACATCTTTCTT 58.829 43.478 5.19 0.00 32.85 2.52
4224 4330 5.602978 TGAAATACCTATCAGAAGGGAGGAC 59.397 44.000 0.00 0.00 41.32 3.85
4234 4341 5.530171 AGCAAGCATGTGAAATACCTATCAG 59.470 40.000 0.00 0.00 0.00 2.90
4238 4345 4.635765 GTGAGCAAGCATGTGAAATACCTA 59.364 41.667 0.00 0.00 0.00 3.08
4262 4369 2.303022 TGAAAGTAAGCAGAGAGTGGGG 59.697 50.000 0.00 0.00 0.00 4.96
4322 4429 2.169561 GGGTGTCTCAGGATCTCTTTCC 59.830 54.545 0.00 0.00 35.90 3.13
4336 4443 3.525199 AGCTTCTCAAATATGGGGTGTCT 59.475 43.478 0.00 0.00 0.00 3.41
4347 4454 2.098117 GGCATTACGCAGCTTCTCAAAT 59.902 45.455 0.00 0.00 45.17 2.32
4387 4494 4.082523 CTGGGTGACGGATGCGGT 62.083 66.667 12.44 0.00 0.00 5.68
4390 4497 1.227674 GGATCTGGGTGACGGATGC 60.228 63.158 0.00 0.00 45.22 3.91
4438 4545 2.111999 TTGTGGTAGCTCGCTTGGCT 62.112 55.000 0.00 0.00 43.02 4.75
4446 4553 0.108138 AGCCGATGTTGTGGTAGCTC 60.108 55.000 0.00 0.00 0.00 4.09
4450 4557 0.673333 CAGCAGCCGATGTTGTGGTA 60.673 55.000 0.00 0.00 35.54 3.25
4452 4559 2.872557 CAGCAGCCGATGTTGTGG 59.127 61.111 0.00 0.00 35.54 4.17
4527 4634 1.067295 AGGAACAACAGATCAGGGCA 58.933 50.000 0.00 0.00 0.00 5.36
4585 4692 2.811317 CTCGAGTTCCCTGCGCAC 60.811 66.667 5.66 0.00 0.00 5.34
4591 4698 3.034635 ACAGATATTGCTCGAGTTCCCT 58.965 45.455 15.13 1.61 0.00 4.20
4599 4706 5.120830 GGCCATAACTTACAGATATTGCTCG 59.879 44.000 0.00 0.00 27.47 5.03
4670 4839 1.734465 GCTCTCCAGGAATTGAACACG 59.266 52.381 0.00 0.00 0.00 4.49
4720 4889 1.238439 CAGGCTAACCACAACACCAG 58.762 55.000 0.00 0.00 39.06 4.00
4726 4898 1.142870 AGTCAAGCAGGCTAACCACAA 59.857 47.619 0.00 0.00 39.06 3.33
4732 4904 0.329261 ATGGCAGTCAAGCAGGCTAA 59.671 50.000 0.00 0.00 35.83 3.09
4736 4908 0.245539 CCAAATGGCAGTCAAGCAGG 59.754 55.000 0.00 0.00 35.83 4.85
4757 4929 3.010472 TCCTCCCACACAATCATCACAAT 59.990 43.478 0.00 0.00 0.00 2.71
4765 4937 4.010349 CCTTTAGTTCCTCCCACACAATC 58.990 47.826 0.00 0.00 0.00 2.67
4766 4939 3.655777 TCCTTTAGTTCCTCCCACACAAT 59.344 43.478 0.00 0.00 0.00 2.71
4776 4949 8.107196 ACATCATAATCCTTCCTTTAGTTCCT 57.893 34.615 0.00 0.00 0.00 3.36
4828 5346 6.528014 TCTTGTTTATTTACGACTGCGAAA 57.472 33.333 0.00 0.00 41.64 3.46
4829 5347 6.528014 TTCTTGTTTATTTACGACTGCGAA 57.472 33.333 0.00 0.00 41.64 4.70
4856 5374 6.816134 AGGTGAAAAACAAGCAAAAATGTT 57.184 29.167 0.00 0.00 41.31 2.71
4859 5377 8.474831 ACTACTAGGTGAAAAACAAGCAAAAAT 58.525 29.630 0.00 0.00 0.00 1.82
4863 5381 8.685838 AATACTACTAGGTGAAAAACAAGCAA 57.314 30.769 0.00 0.00 0.00 3.91
4887 5405 9.151471 GCTGTGATAAGAGAACTGTTTACATAA 57.849 33.333 0.00 0.00 0.00 1.90
4888 5406 8.311109 TGCTGTGATAAGAGAACTGTTTACATA 58.689 33.333 0.00 0.00 0.00 2.29
4890 5408 6.423905 GTGCTGTGATAAGAGAACTGTTTACA 59.576 38.462 0.00 0.00 0.00 2.41
4891 5409 6.423905 TGTGCTGTGATAAGAGAACTGTTTAC 59.576 38.462 0.00 0.00 0.00 2.01
4892 5410 6.521162 TGTGCTGTGATAAGAGAACTGTTTA 58.479 36.000 0.00 0.00 0.00 2.01
4893 5411 5.368145 TGTGCTGTGATAAGAGAACTGTTT 58.632 37.500 0.00 0.00 0.00 2.83
4894 5412 4.960938 TGTGCTGTGATAAGAGAACTGTT 58.039 39.130 0.00 0.00 0.00 3.16
4896 5414 4.934001 ACATGTGCTGTGATAAGAGAACTG 59.066 41.667 0.00 0.00 36.48 3.16
4897 5415 5.157940 ACATGTGCTGTGATAAGAGAACT 57.842 39.130 0.00 0.00 36.48 3.01
4899 5417 6.286240 AGTACATGTGCTGTGATAAGAGAA 57.714 37.500 16.23 0.00 38.92 2.87
4900 5418 5.921962 AGTACATGTGCTGTGATAAGAGA 57.078 39.130 16.23 0.00 38.92 3.10
4901 5419 7.428826 TCATAGTACATGTGCTGTGATAAGAG 58.571 38.462 30.10 11.11 38.17 2.85
4903 5421 6.644181 CCTCATAGTACATGTGCTGTGATAAG 59.356 42.308 32.38 23.78 40.99 1.73
4905 5423 5.509670 GCCTCATAGTACATGTGCTGTGATA 60.510 44.000 32.38 18.32 40.99 2.15
4906 5424 4.741837 GCCTCATAGTACATGTGCTGTGAT 60.742 45.833 32.38 15.59 40.99 3.06
4908 5426 2.868583 GCCTCATAGTACATGTGCTGTG 59.131 50.000 27.18 27.18 38.92 3.66
4912 5587 4.153117 GCTATTGCCTCATAGTACATGTGC 59.847 45.833 9.11 7.34 0.00 4.57
4931 5606 4.656112 ACCAGTAGCTTCAATGTAGGCTAT 59.344 41.667 0.00 0.00 39.09 2.97
4935 5610 5.305644 AGGATACCAGTAGCTTCAATGTAGG 59.694 44.000 0.00 0.00 37.17 3.18
4936 5611 6.412362 AGGATACCAGTAGCTTCAATGTAG 57.588 41.667 0.00 0.00 37.17 2.74
4937 5612 6.582636 CAAGGATACCAGTAGCTTCAATGTA 58.417 40.000 0.00 0.00 37.17 2.29
4938 5613 5.431765 CAAGGATACCAGTAGCTTCAATGT 58.568 41.667 0.00 0.00 37.17 2.71
4940 5615 4.080356 TGCAAGGATACCAGTAGCTTCAAT 60.080 41.667 0.00 0.00 37.17 2.57
4941 5616 3.263170 TGCAAGGATACCAGTAGCTTCAA 59.737 43.478 0.00 0.00 37.17 2.69
4942 5617 2.837591 TGCAAGGATACCAGTAGCTTCA 59.162 45.455 0.00 0.00 37.17 3.02
4943 5618 3.118592 AGTGCAAGGATACCAGTAGCTTC 60.119 47.826 0.00 0.00 37.17 3.86
4944 5619 2.840651 AGTGCAAGGATACCAGTAGCTT 59.159 45.455 0.00 0.00 37.17 3.74
4946 5621 2.990066 AGTGCAAGGATACCAGTAGC 57.010 50.000 0.00 0.00 37.17 3.58
4947 5622 5.791336 TCATAGTGCAAGGATACCAGTAG 57.209 43.478 0.00 0.00 37.17 2.57
4948 5623 6.553953 TTTCATAGTGCAAGGATACCAGTA 57.446 37.500 0.00 0.00 37.17 2.74
4950 5625 9.155975 GTATATTTCATAGTGCAAGGATACCAG 57.844 37.037 0.00 0.00 37.17 4.00
4951 5626 8.880244 AGTATATTTCATAGTGCAAGGATACCA 58.120 33.333 0.00 0.00 37.17 3.25
4974 5659 4.694982 TGGACGTTCGTTCATACTGTAGTA 59.305 41.667 1.96 0.00 34.67 1.82
4975 5660 3.503363 TGGACGTTCGTTCATACTGTAGT 59.497 43.478 1.96 0.00 0.00 2.73
4976 5661 4.087510 TGGACGTTCGTTCATACTGTAG 57.912 45.455 1.96 0.00 0.00 2.74
4977 5662 4.502171 TTGGACGTTCGTTCATACTGTA 57.498 40.909 7.16 0.00 0.00 2.74
4978 5663 3.374220 TTGGACGTTCGTTCATACTGT 57.626 42.857 7.16 0.00 0.00 3.55
4979 5664 4.210537 AGTTTTGGACGTTCGTTCATACTG 59.789 41.667 15.77 0.00 0.00 2.74
4980 5665 4.374399 AGTTTTGGACGTTCGTTCATACT 58.626 39.130 7.16 10.55 0.00 2.12
4981 5666 4.720530 AGTTTTGGACGTTCGTTCATAC 57.279 40.909 7.16 8.70 0.00 2.39
5000 5685 4.120946 TGGGGCTGGTTTGTTAATTAGT 57.879 40.909 0.00 0.00 0.00 2.24
5008 5693 1.146982 AGTTACATGGGGCTGGTTTGT 59.853 47.619 0.00 0.00 0.00 2.83
5016 5701 1.066430 TCGTCTGAAGTTACATGGGGC 60.066 52.381 0.00 0.00 0.00 5.80
5018 5703 4.115516 CTGATCGTCTGAAGTTACATGGG 58.884 47.826 0.00 0.00 0.00 4.00
5021 5706 4.220821 ACACCTGATCGTCTGAAGTTACAT 59.779 41.667 0.00 0.00 0.00 2.29
5022 5707 3.572682 ACACCTGATCGTCTGAAGTTACA 59.427 43.478 0.00 0.00 0.00 2.41
5023 5708 4.167268 GACACCTGATCGTCTGAAGTTAC 58.833 47.826 0.00 0.00 0.00 2.50
5024 5709 3.192844 GGACACCTGATCGTCTGAAGTTA 59.807 47.826 0.00 0.00 32.57 2.24
5025 5710 2.028930 GGACACCTGATCGTCTGAAGTT 60.029 50.000 0.00 0.00 32.57 2.66
5027 5712 1.134965 GGGACACCTGATCGTCTGAAG 60.135 57.143 0.00 0.00 32.57 3.02
5028 5713 0.895530 GGGACACCTGATCGTCTGAA 59.104 55.000 0.00 0.00 32.57 3.02
5029 5714 0.251608 TGGGACACCTGATCGTCTGA 60.252 55.000 0.00 0.00 37.76 3.27
5137 5833 1.554822 CCTCCTCTCCAAGGGGTACAA 60.555 57.143 0.00 0.00 45.34 2.41
5295 5991 4.807039 TTCGCCTACGCCTTCGCC 62.807 66.667 0.00 0.00 39.84 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.