Multiple sequence alignment - TraesCS6A01G099700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G099700 chr6A 100.000 2411 0 0 1 2411 67143086 67140676 0.000000e+00 4453.0
1 TraesCS6A01G099700 chr6D 94.840 814 31 7 717 1528 47812105 47812909 0.000000e+00 1260.0
2 TraesCS6A01G099700 chr6D 90.517 464 31 3 1849 2308 47812922 47813376 3.430000e-168 601.0
3 TraesCS6A01G099700 chr6D 88.587 184 16 4 467 648 47811762 47811942 4.040000e-53 219.0
4 TraesCS6A01G099700 chr3A 87.988 1024 59 23 849 1851 111106342 111105362 0.000000e+00 1151.0
5 TraesCS6A01G099700 chr3A 95.556 45 2 0 2343 2387 111104604 111104560 3.320000e-09 73.1
6 TraesCS6A01G099700 chr3B 89.417 926 50 18 930 1851 168140487 168139606 0.000000e+00 1123.0
7 TraesCS6A01G099700 chr3B 89.327 431 31 6 1913 2341 168139379 168138962 5.900000e-146 527.0
8 TraesCS6A01G099700 chr3B 91.667 96 7 1 1541 1635 168146556 168146461 5.410000e-27 132.0
9 TraesCS6A01G099700 chr3B 97.778 45 1 0 2343 2387 168138785 168138741 7.150000e-11 78.7
10 TraesCS6A01G099700 chr3D 89.955 886 44 20 849 1731 114883248 114882405 0.000000e+00 1101.0
11 TraesCS6A01G099700 chr3D 89.103 468 34 6 1875 2341 114882174 114881723 1.250000e-157 566.0
12 TraesCS6A01G099700 chr3D 93.684 95 6 0 1541 1635 114886443 114886349 2.500000e-30 143.0
13 TraesCS6A01G099700 chr3D 93.333 45 3 0 2343 2387 114881560 114881516 1.550000e-07 67.6
14 TraesCS6A01G099700 chr1A 85.862 870 80 28 752 1607 541319091 541319931 0.000000e+00 885.0
15 TraesCS6A01G099700 chr1A 88.811 715 43 22 739 1422 542170093 542170801 0.000000e+00 843.0
16 TraesCS6A01G099700 chr1D 84.813 935 72 40 739 1641 446436822 446437718 0.000000e+00 876.0
17 TraesCS6A01G099700 chr1D 90.000 670 49 12 752 1418 445317343 445317997 0.000000e+00 850.0
18 TraesCS6A01G099700 chr1D 90.385 104 7 2 1541 1641 445385151 445385048 1.500000e-27 134.0
19 TraesCS6A01G099700 chr1B 89.201 713 50 15 731 1421 608463178 608462471 0.000000e+00 865.0
20 TraesCS6A01G099700 chr1B 82.220 928 84 43 752 1641 608054105 608053221 0.000000e+00 725.0
21 TraesCS6A01G099700 chr1B 85.812 585 48 21 1066 1641 608355308 608354750 2.670000e-164 588.0
22 TraesCS6A01G099700 chr2D 91.358 243 16 3 189 431 99345188 99345425 6.430000e-86 327.0
23 TraesCS6A01G099700 chr4B 91.810 232 13 2 200 431 44191861 44191636 3.870000e-83 318.0
24 TraesCS6A01G099700 chr4B 94.595 111 6 0 189 299 9398907 9399017 3.190000e-39 172.0
25 TraesCS6A01G099700 chr4B 92.035 113 9 0 51 163 44192046 44191934 2.480000e-35 159.0
26 TraesCS6A01G099700 chr7D 88.664 247 26 2 185 431 632761911 632762155 1.400000e-77 300.0
27 TraesCS6A01G099700 chr7D 91.228 114 9 1 51 163 632761718 632761831 1.150000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G099700 chr6A 67140676 67143086 2410 True 4453.000000 4453 100.000000 1 2411 1 chr6A.!!$R1 2410
1 TraesCS6A01G099700 chr6D 47811762 47813376 1614 False 693.333333 1260 91.314667 467 2308 3 chr6D.!!$F1 1841
2 TraesCS6A01G099700 chr3A 111104560 111106342 1782 True 612.050000 1151 91.772000 849 2387 2 chr3A.!!$R1 1538
3 TraesCS6A01G099700 chr3B 168138741 168140487 1746 True 576.233333 1123 92.174000 930 2387 3 chr3B.!!$R2 1457
4 TraesCS6A01G099700 chr3D 114881516 114886443 4927 True 469.400000 1101 91.518750 849 2387 4 chr3D.!!$R1 1538
5 TraesCS6A01G099700 chr1A 541319091 541319931 840 False 885.000000 885 85.862000 752 1607 1 chr1A.!!$F1 855
6 TraesCS6A01G099700 chr1A 542170093 542170801 708 False 843.000000 843 88.811000 739 1422 1 chr1A.!!$F2 683
7 TraesCS6A01G099700 chr1D 446436822 446437718 896 False 876.000000 876 84.813000 739 1641 1 chr1D.!!$F2 902
8 TraesCS6A01G099700 chr1D 445317343 445317997 654 False 850.000000 850 90.000000 752 1418 1 chr1D.!!$F1 666
9 TraesCS6A01G099700 chr1B 608462471 608463178 707 True 865.000000 865 89.201000 731 1421 1 chr1B.!!$R3 690
10 TraesCS6A01G099700 chr1B 608053221 608054105 884 True 725.000000 725 82.220000 752 1641 1 chr1B.!!$R1 889
11 TraesCS6A01G099700 chr1B 608354750 608355308 558 True 588.000000 588 85.812000 1066 1641 1 chr1B.!!$R2 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.033208 TGGACAAGCCATTCCCCATC 60.033 55.0 0.0 0.0 43.33 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 4160 0.521242 GCATAAGAACACGCGGCTTG 60.521 55.0 12.47 4.78 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.969993 ATTAGTTTGTTGCTCCCTGTAAAA 57.030 33.333 0.00 0.00 0.00 1.52
102 103 9.707957 ATTCCATTACAATAGGGTTACAATTGA 57.292 29.630 13.59 0.00 35.18 2.57
103 104 8.746052 TCCATTACAATAGGGTTACAATTGAG 57.254 34.615 13.59 0.00 35.18 3.02
104 105 8.553153 TCCATTACAATAGGGTTACAATTGAGA 58.447 33.333 13.59 0.00 35.18 3.27
105 106 8.840321 CCATTACAATAGGGTTACAATTGAGAG 58.160 37.037 13.59 0.00 35.18 3.20
106 107 8.840321 CATTACAATAGGGTTACAATTGAGAGG 58.160 37.037 13.59 0.00 35.18 3.69
107 108 5.193679 ACAATAGGGTTACAATTGAGAGGC 58.806 41.667 13.59 0.00 35.18 4.70
108 109 5.192927 CAATAGGGTTACAATTGAGAGGCA 58.807 41.667 13.59 0.00 33.38 4.75
110 111 2.912956 AGGGTTACAATTGAGAGGCAGA 59.087 45.455 13.59 0.00 0.00 4.26
111 112 3.330701 AGGGTTACAATTGAGAGGCAGAA 59.669 43.478 13.59 0.00 0.00 3.02
112 113 3.691609 GGGTTACAATTGAGAGGCAGAAG 59.308 47.826 13.59 0.00 0.00 2.85
115 116 5.241728 GGTTACAATTGAGAGGCAGAAGTTT 59.758 40.000 13.59 0.00 0.00 2.66
116 117 6.374578 GTTACAATTGAGAGGCAGAAGTTTC 58.625 40.000 13.59 0.00 0.00 2.78
117 118 4.723309 ACAATTGAGAGGCAGAAGTTTCT 58.277 39.130 13.59 0.00 38.25 2.52
118 119 5.136105 ACAATTGAGAGGCAGAAGTTTCTT 58.864 37.500 13.59 0.00 34.74 2.52
119 120 6.299141 ACAATTGAGAGGCAGAAGTTTCTTA 58.701 36.000 13.59 0.00 34.74 2.10
121 122 7.449704 ACAATTGAGAGGCAGAAGTTTCTTAAT 59.550 33.333 13.59 0.00 34.74 1.40
123 124 7.907214 TTGAGAGGCAGAAGTTTCTTAATAC 57.093 36.000 0.00 0.00 34.74 1.89
124 125 7.004555 TGAGAGGCAGAAGTTTCTTAATACA 57.995 36.000 0.00 0.00 34.74 2.29
125 126 7.624549 TGAGAGGCAGAAGTTTCTTAATACAT 58.375 34.615 0.00 0.00 34.74 2.29
126 127 7.550551 TGAGAGGCAGAAGTTTCTTAATACATG 59.449 37.037 0.00 0.00 34.74 3.21
128 129 6.485171 AGGCAGAAGTTTCTTAATACATGGT 58.515 36.000 0.00 0.00 34.74 3.55
129 130 6.375455 AGGCAGAAGTTTCTTAATACATGGTG 59.625 38.462 0.00 0.00 34.74 4.17
130 131 6.404734 GGCAGAAGTTTCTTAATACATGGTGG 60.405 42.308 0.00 0.00 34.74 4.61
132 133 7.626452 GCAGAAGTTTCTTAATACATGGTGGTC 60.626 40.741 0.00 0.00 34.74 4.02
133 134 6.884836 AGAAGTTTCTTAATACATGGTGGTCC 59.115 38.462 0.00 0.00 32.55 4.46
134 135 6.388619 AGTTTCTTAATACATGGTGGTCCT 57.611 37.500 0.00 0.00 34.23 3.85
135 136 6.415573 AGTTTCTTAATACATGGTGGTCCTC 58.584 40.000 0.00 0.00 34.23 3.71
138 139 7.931015 TTCTTAATACATGGTGGTCCTCTAT 57.069 36.000 0.00 0.00 34.23 1.98
139 140 9.442062 TTTCTTAATACATGGTGGTCCTCTATA 57.558 33.333 0.00 0.00 34.23 1.31
140 141 9.615660 TTCTTAATACATGGTGGTCCTCTATAT 57.384 33.333 0.00 0.00 34.23 0.86
143 144 7.425224 AATACATGGTGGTCCTCTATATAGC 57.575 40.000 4.75 0.00 34.23 2.97
144 145 4.097418 ACATGGTGGTCCTCTATATAGCC 58.903 47.826 4.75 1.38 34.23 3.93
146 147 3.507411 TGGTGGTCCTCTATATAGCCAC 58.493 50.000 20.68 20.68 43.89 5.01
147 148 3.116900 TGGTGGTCCTCTATATAGCCACA 60.117 47.826 25.88 15.82 45.73 4.17
148 149 3.258622 GGTGGTCCTCTATATAGCCACAC 59.741 52.174 25.88 18.66 45.73 3.82
149 150 3.895656 GTGGTCCTCTATATAGCCACACA 59.104 47.826 22.53 10.48 44.00 3.72
150 151 4.344102 GTGGTCCTCTATATAGCCACACAA 59.656 45.833 22.53 4.15 44.00 3.33
151 152 4.344102 TGGTCCTCTATATAGCCACACAAC 59.656 45.833 4.75 0.00 0.00 3.32
152 153 4.344102 GGTCCTCTATATAGCCACACAACA 59.656 45.833 4.75 0.00 0.00 3.33
153 154 5.163343 GGTCCTCTATATAGCCACACAACAA 60.163 44.000 4.75 0.00 0.00 2.83
154 155 6.464465 GGTCCTCTATATAGCCACACAACAAT 60.464 42.308 4.75 0.00 0.00 2.71
155 156 6.425114 GTCCTCTATATAGCCACACAACAATG 59.575 42.308 4.75 0.00 0.00 2.82
156 157 5.702670 CCTCTATATAGCCACACAACAATGG 59.297 44.000 4.75 0.00 39.16 3.16
158 159 7.368198 TCTATATAGCCACACAACAATGGTA 57.632 36.000 4.75 0.00 38.34 3.25
159 160 7.214381 TCTATATAGCCACACAACAATGGTAC 58.786 38.462 4.75 0.00 38.34 3.34
160 161 2.656947 AGCCACACAACAATGGTACT 57.343 45.000 0.00 0.00 38.34 2.73
161 162 2.504367 AGCCACACAACAATGGTACTC 58.496 47.619 0.00 0.00 38.34 2.59
162 163 2.106511 AGCCACACAACAATGGTACTCT 59.893 45.455 0.00 0.00 38.34 3.24
163 164 3.326588 AGCCACACAACAATGGTACTCTA 59.673 43.478 0.00 0.00 38.34 2.43
164 165 4.019321 AGCCACACAACAATGGTACTCTAT 60.019 41.667 0.00 0.00 38.34 1.98
166 167 5.245531 CCACACAACAATGGTACTCTATGT 58.754 41.667 0.00 0.00 0.00 2.29
167 168 6.403049 CCACACAACAATGGTACTCTATGTA 58.597 40.000 0.00 0.00 0.00 2.29
168 169 7.047891 CCACACAACAATGGTACTCTATGTAT 58.952 38.462 0.00 0.00 33.23 2.29
169 170 8.201464 CCACACAACAATGGTACTCTATGTATA 58.799 37.037 0.00 0.00 33.23 1.47
171 172 9.595823 ACACAACAATGGTACTCTATGTATAAC 57.404 33.333 0.00 0.00 33.23 1.89
172 173 9.594478 CACAACAATGGTACTCTATGTATAACA 57.406 33.333 0.00 0.00 33.23 2.41
173 174 9.817809 ACAACAATGGTACTCTATGTATAACAG 57.182 33.333 0.00 0.00 33.23 3.16
184 185 9.032624 ACTCTATGTATAACAGTTAACAGTGGT 57.967 33.333 8.61 0.00 0.00 4.16
185 186 9.517609 CTCTATGTATAACAGTTAACAGTGGTC 57.482 37.037 8.61 0.00 0.00 4.02
186 187 8.472413 TCTATGTATAACAGTTAACAGTGGTCC 58.528 37.037 8.61 0.00 0.00 4.46
187 188 6.675413 TGTATAACAGTTAACAGTGGTCCT 57.325 37.500 8.61 0.00 0.00 3.85
188 189 6.694447 TGTATAACAGTTAACAGTGGTCCTC 58.306 40.000 8.61 0.00 0.00 3.71
189 190 5.818678 ATAACAGTTAACAGTGGTCCTCA 57.181 39.130 8.61 0.00 0.00 3.86
190 191 4.706842 AACAGTTAACAGTGGTCCTCAT 57.293 40.909 8.61 0.00 0.00 2.90
191 192 5.818678 AACAGTTAACAGTGGTCCTCATA 57.181 39.130 8.61 0.00 0.00 2.15
192 193 5.818678 ACAGTTAACAGTGGTCCTCATAA 57.181 39.130 8.61 0.00 0.00 1.90
193 194 5.794894 ACAGTTAACAGTGGTCCTCATAAG 58.205 41.667 8.61 0.00 0.00 1.73
194 195 5.542635 ACAGTTAACAGTGGTCCTCATAAGA 59.457 40.000 8.61 0.00 0.00 2.10
196 197 6.934645 CAGTTAACAGTGGTCCTCATAAGAAA 59.065 38.462 8.61 0.00 0.00 2.52
198 199 8.164070 AGTTAACAGTGGTCCTCATAAGAAATT 58.836 33.333 8.61 0.00 0.00 1.82
200 201 6.824305 ACAGTGGTCCTCATAAGAAATTTG 57.176 37.500 0.00 0.00 0.00 2.32
202 203 7.177878 ACAGTGGTCCTCATAAGAAATTTGAT 58.822 34.615 0.00 0.00 0.00 2.57
203 204 7.337942 ACAGTGGTCCTCATAAGAAATTTGATC 59.662 37.037 0.00 0.00 0.00 2.92
205 206 7.772757 AGTGGTCCTCATAAGAAATTTGATCTC 59.227 37.037 0.00 0.00 0.00 2.75
206 207 7.012799 GTGGTCCTCATAAGAAATTTGATCTCC 59.987 40.741 0.00 0.00 0.00 3.71
207 208 6.203723 GGTCCTCATAAGAAATTTGATCTCCG 59.796 42.308 0.00 0.00 0.00 4.63
208 209 5.760253 TCCTCATAAGAAATTTGATCTCCGC 59.240 40.000 0.00 0.00 0.00 5.54
209 210 5.762218 CCTCATAAGAAATTTGATCTCCGCT 59.238 40.000 0.00 0.00 0.00 5.52
211 212 7.095439 CCTCATAAGAAATTTGATCTCCGCTAC 60.095 40.741 0.00 0.00 0.00 3.58
212 213 7.500992 TCATAAGAAATTTGATCTCCGCTACT 58.499 34.615 0.00 0.00 0.00 2.57
215 216 9.832445 ATAAGAAATTTGATCTCCGCTACTAAA 57.168 29.630 0.00 0.00 0.00 1.85
216 217 8.738645 AAGAAATTTGATCTCCGCTACTAAAT 57.261 30.769 0.00 0.00 0.00 1.40
217 218 8.147642 AGAAATTTGATCTCCGCTACTAAATG 57.852 34.615 0.00 0.00 0.00 2.32
218 219 5.931441 ATTTGATCTCCGCTACTAAATGC 57.069 39.130 0.00 0.00 0.00 3.56
219 220 3.386768 TGATCTCCGCTACTAAATGCC 57.613 47.619 0.00 0.00 0.00 4.40
221 222 1.491668 TCTCCGCTACTAAATGCCCA 58.508 50.000 0.00 0.00 0.00 5.36
222 223 2.047061 TCTCCGCTACTAAATGCCCAT 58.953 47.619 0.00 0.00 0.00 4.00
223 224 3.236047 TCTCCGCTACTAAATGCCCATA 58.764 45.455 0.00 0.00 0.00 2.74
224 225 3.838317 TCTCCGCTACTAAATGCCCATAT 59.162 43.478 0.00 0.00 0.00 1.78
226 227 2.420022 CCGCTACTAAATGCCCATATGC 59.580 50.000 0.00 0.00 0.00 3.14
227 228 2.420022 CGCTACTAAATGCCCATATGCC 59.580 50.000 0.00 0.00 0.00 4.40
228 229 2.420022 GCTACTAAATGCCCATATGCCG 59.580 50.000 0.00 0.00 0.00 5.69
229 230 2.949177 ACTAAATGCCCATATGCCGA 57.051 45.000 0.00 0.00 0.00 5.54
230 231 3.439857 ACTAAATGCCCATATGCCGAT 57.560 42.857 0.00 0.00 0.00 4.18
231 232 3.766545 ACTAAATGCCCATATGCCGATT 58.233 40.909 0.00 0.00 0.00 3.34
232 233 4.151883 ACTAAATGCCCATATGCCGATTT 58.848 39.130 0.00 3.70 0.00 2.17
233 234 3.389925 AAATGCCCATATGCCGATTTG 57.610 42.857 0.00 0.00 0.00 2.32
235 236 0.184692 TGCCCATATGCCGATTTGGA 59.815 50.000 0.00 0.00 42.00 3.53
236 237 0.598065 GCCCATATGCCGATTTGGAC 59.402 55.000 0.00 0.00 42.00 4.02
238 239 2.305928 CCCATATGCCGATTTGGACAA 58.694 47.619 0.00 0.00 42.00 3.18
239 240 2.294233 CCCATATGCCGATTTGGACAAG 59.706 50.000 0.00 0.00 42.00 3.16
249 250 3.599602 TGGACAAGCCATTCCCCA 58.400 55.556 0.00 0.00 43.33 4.96
251 252 0.033208 TGGACAAGCCATTCCCCATC 60.033 55.000 0.00 0.00 43.33 3.51
252 253 0.033208 GGACAAGCCATTCCCCATCA 60.033 55.000 0.00 0.00 36.34 3.07
253 254 1.619432 GGACAAGCCATTCCCCATCAA 60.619 52.381 0.00 0.00 36.34 2.57
254 255 2.178580 GACAAGCCATTCCCCATCAAA 58.821 47.619 0.00 0.00 0.00 2.69
255 256 2.566724 GACAAGCCATTCCCCATCAAAA 59.433 45.455 0.00 0.00 0.00 2.44
256 257 2.302733 ACAAGCCATTCCCCATCAAAAC 59.697 45.455 0.00 0.00 0.00 2.43
257 258 1.571955 AGCCATTCCCCATCAAAACC 58.428 50.000 0.00 0.00 0.00 3.27
259 260 1.846007 CCATTCCCCATCAAAACCGA 58.154 50.000 0.00 0.00 0.00 4.69
260 261 1.476488 CCATTCCCCATCAAAACCGAC 59.524 52.381 0.00 0.00 0.00 4.79
261 262 2.166829 CATTCCCCATCAAAACCGACA 58.833 47.619 0.00 0.00 0.00 4.35
263 264 0.768622 TCCCCATCAAAACCGACAGT 59.231 50.000 0.00 0.00 0.00 3.55
264 265 0.881118 CCCCATCAAAACCGACAGTG 59.119 55.000 0.00 0.00 0.00 3.66
265 266 0.240945 CCCATCAAAACCGACAGTGC 59.759 55.000 0.00 0.00 0.00 4.40
267 268 1.238439 CATCAAAACCGACAGTGCCT 58.762 50.000 0.00 0.00 0.00 4.75
268 269 1.197721 CATCAAAACCGACAGTGCCTC 59.802 52.381 0.00 0.00 0.00 4.70
269 270 0.534203 TCAAAACCGACAGTGCCTCC 60.534 55.000 0.00 0.00 0.00 4.30
270 271 1.597027 AAAACCGACAGTGCCTCCG 60.597 57.895 0.00 0.00 0.00 4.63
271 272 2.035237 AAAACCGACAGTGCCTCCGA 62.035 55.000 0.00 0.00 0.00 4.55
272 273 2.436087 AAACCGACAGTGCCTCCGAG 62.436 60.000 0.00 0.00 0.00 4.63
273 274 4.135153 CCGACAGTGCCTCCGAGG 62.135 72.222 10.41 10.41 38.80 4.63
274 275 3.062466 CGACAGTGCCTCCGAGGA 61.062 66.667 19.33 0.50 37.67 3.71
275 276 2.888863 GACAGTGCCTCCGAGGAG 59.111 66.667 19.33 12.06 37.67 3.69
278 279 1.680651 CAGTGCCTCCGAGGAGTCT 60.681 63.158 19.33 9.28 37.67 3.24
279 280 1.680651 AGTGCCTCCGAGGAGTCTG 60.681 63.158 19.33 4.25 37.67 3.51
280 281 1.679305 GTGCCTCCGAGGAGTCTGA 60.679 63.158 19.33 0.00 37.67 3.27
281 282 1.040339 GTGCCTCCGAGGAGTCTGAT 61.040 60.000 19.33 0.00 37.67 2.90
283 284 0.103937 GCCTCCGAGGAGTCTGATTG 59.896 60.000 19.33 2.25 37.67 2.67
284 285 1.479709 CCTCCGAGGAGTCTGATTGT 58.520 55.000 17.04 0.00 37.67 2.71
285 286 2.656002 CCTCCGAGGAGTCTGATTGTA 58.344 52.381 17.04 0.00 37.67 2.41
287 288 3.017442 CTCCGAGGAGTCTGATTGTACA 58.983 50.000 10.88 0.00 37.47 2.90
288 289 3.427573 TCCGAGGAGTCTGATTGTACAA 58.572 45.455 11.41 11.41 0.00 2.41
290 291 5.198207 TCCGAGGAGTCTGATTGTACAATA 58.802 41.667 20.83 3.21 0.00 1.90
291 292 5.655090 TCCGAGGAGTCTGATTGTACAATAA 59.345 40.000 20.83 13.13 0.00 1.40
292 293 6.323996 TCCGAGGAGTCTGATTGTACAATAAT 59.676 38.462 20.83 5.31 0.00 1.28
293 294 6.642950 CCGAGGAGTCTGATTGTACAATAATC 59.357 42.308 20.83 13.65 35.59 1.75
294 295 7.203218 CGAGGAGTCTGATTGTACAATAATCA 58.797 38.462 20.83 14.49 41.00 2.57
301 302 6.882610 TGATTGTACAATAATCAGGCCATC 57.117 37.500 20.83 5.85 39.05 3.51
302 303 6.363882 TGATTGTACAATAATCAGGCCATCA 58.636 36.000 20.83 8.36 39.05 3.07
303 304 6.262944 TGATTGTACAATAATCAGGCCATCAC 59.737 38.462 20.83 4.41 39.05 3.06
304 305 5.372343 TGTACAATAATCAGGCCATCACT 57.628 39.130 5.01 0.00 0.00 3.41
305 306 6.493189 TGTACAATAATCAGGCCATCACTA 57.507 37.500 5.01 0.00 0.00 2.74
306 307 7.078249 TGTACAATAATCAGGCCATCACTAT 57.922 36.000 5.01 0.00 0.00 2.12
308 309 4.763793 ACAATAATCAGGCCATCACTATGC 59.236 41.667 5.01 0.00 0.00 3.14
309 310 4.923516 ATAATCAGGCCATCACTATGCT 57.076 40.909 5.01 0.00 0.00 3.79
310 311 2.563261 ATCAGGCCATCACTATGCTG 57.437 50.000 5.01 0.00 0.00 4.41
311 312 0.179037 TCAGGCCATCACTATGCTGC 60.179 55.000 5.01 0.00 0.00 5.25
312 313 0.464916 CAGGCCATCACTATGCTGCA 60.465 55.000 5.01 4.13 0.00 4.41
313 314 0.179026 AGGCCATCACTATGCTGCAG 60.179 55.000 10.11 10.11 0.00 4.41
314 315 1.653115 GCCATCACTATGCTGCAGC 59.347 57.895 31.89 31.89 42.50 5.25
315 316 1.939597 CCATCACTATGCTGCAGCG 59.060 57.895 32.11 20.97 45.83 5.18
317 318 1.890979 ATCACTATGCTGCAGCGCC 60.891 57.895 32.11 8.59 45.83 6.53
319 320 2.046023 ACTATGCTGCAGCGCCAA 60.046 55.556 32.11 16.56 45.83 4.52
320 321 1.452651 ACTATGCTGCAGCGCCAAT 60.453 52.632 32.11 22.14 45.83 3.16
333 334 4.700448 CCAATGCCACCCCCTGCA 62.700 66.667 0.00 0.00 42.52 4.41
335 336 2.042639 AATGCCACCCCCTGCATC 60.043 61.111 0.00 0.00 46.97 3.91
336 337 2.933617 AATGCCACCCCCTGCATCA 61.934 57.895 0.00 0.00 46.97 3.07
337 338 2.458969 AATGCCACCCCCTGCATCAA 62.459 55.000 0.00 0.00 46.97 2.57
338 339 2.283821 GCCACCCCCTGCATCAAA 60.284 61.111 0.00 0.00 0.00 2.69
339 340 1.912763 GCCACCCCCTGCATCAAAA 60.913 57.895 0.00 0.00 0.00 2.44
340 341 1.974543 CCACCCCCTGCATCAAAAC 59.025 57.895 0.00 0.00 0.00 2.43
342 343 1.269012 CACCCCCTGCATCAAAACAT 58.731 50.000 0.00 0.00 0.00 2.71
343 344 1.066716 CACCCCCTGCATCAAAACATG 60.067 52.381 0.00 0.00 0.00 3.21
345 346 2.225242 ACCCCCTGCATCAAAACATGTA 60.225 45.455 0.00 0.00 0.00 2.29
346 347 2.830923 CCCCCTGCATCAAAACATGTAA 59.169 45.455 0.00 0.00 0.00 2.41
347 348 3.368323 CCCCCTGCATCAAAACATGTAAC 60.368 47.826 0.00 0.00 0.00 2.50
349 350 4.380867 CCCCTGCATCAAAACATGTAACTC 60.381 45.833 0.00 0.00 0.00 3.01
350 351 4.380867 CCCTGCATCAAAACATGTAACTCC 60.381 45.833 0.00 0.00 0.00 3.85
353 354 4.083537 TGCATCAAAACATGTAACTCCGTC 60.084 41.667 0.00 0.00 0.00 4.79
355 356 5.671329 GCATCAAAACATGTAACTCCGTCTC 60.671 44.000 0.00 0.00 0.00 3.36
356 357 4.312443 TCAAAACATGTAACTCCGTCTCC 58.688 43.478 0.00 0.00 0.00 3.71
357 358 4.062293 CAAAACATGTAACTCCGTCTCCA 58.938 43.478 0.00 0.00 0.00 3.86
358 359 4.345859 AAACATGTAACTCCGTCTCCAA 57.654 40.909 0.00 0.00 0.00 3.53
359 360 4.553330 AACATGTAACTCCGTCTCCAAT 57.447 40.909 0.00 0.00 0.00 3.16
360 361 3.861840 ACATGTAACTCCGTCTCCAATG 58.138 45.455 0.00 0.00 0.00 2.82
361 362 2.380084 TGTAACTCCGTCTCCAATGC 57.620 50.000 0.00 0.00 0.00 3.56
364 365 0.389948 AACTCCGTCTCCAATGCGTC 60.390 55.000 0.00 0.00 0.00 5.19
365 366 1.215382 CTCCGTCTCCAATGCGTCA 59.785 57.895 0.00 0.00 0.00 4.35
366 367 0.179100 CTCCGTCTCCAATGCGTCAT 60.179 55.000 0.00 0.00 0.00 3.06
367 368 0.249120 TCCGTCTCCAATGCGTCATT 59.751 50.000 0.09 0.09 34.04 2.57
368 369 1.478916 TCCGTCTCCAATGCGTCATTA 59.521 47.619 5.03 0.00 32.35 1.90
369 370 1.593006 CCGTCTCCAATGCGTCATTAC 59.407 52.381 5.03 0.80 32.35 1.89
370 371 2.267426 CGTCTCCAATGCGTCATTACA 58.733 47.619 5.03 0.00 32.35 2.41
371 372 2.670905 CGTCTCCAATGCGTCATTACAA 59.329 45.455 5.03 0.00 32.35 2.41
372 373 3.309682 CGTCTCCAATGCGTCATTACAAT 59.690 43.478 5.03 0.00 32.35 2.71
373 374 4.201812 CGTCTCCAATGCGTCATTACAATT 60.202 41.667 5.03 0.00 32.35 2.32
374 375 5.006261 CGTCTCCAATGCGTCATTACAATTA 59.994 40.000 5.03 0.00 32.35 1.40
375 376 6.456315 CGTCTCCAATGCGTCATTACAATTAA 60.456 38.462 5.03 0.00 32.35 1.40
376 377 7.247728 GTCTCCAATGCGTCATTACAATTAAA 58.752 34.615 5.03 0.00 32.35 1.52
377 378 7.218204 GTCTCCAATGCGTCATTACAATTAAAC 59.782 37.037 5.03 0.00 32.35 2.01
378 379 6.914259 TCCAATGCGTCATTACAATTAAACA 58.086 32.000 5.03 0.00 32.35 2.83
379 380 7.371159 TCCAATGCGTCATTACAATTAAACAA 58.629 30.769 5.03 0.00 32.35 2.83
380 381 7.867909 TCCAATGCGTCATTACAATTAAACAAA 59.132 29.630 5.03 0.00 32.35 2.83
381 382 8.655092 CCAATGCGTCATTACAATTAAACAAAT 58.345 29.630 5.03 0.00 32.35 2.32
385 386 7.217258 TGCGTCATTACAATTAAACAAATAGCG 59.783 33.333 0.00 0.00 0.00 4.26
386 387 7.427030 GCGTCATTACAATTAAACAAATAGCGA 59.573 33.333 0.00 0.00 0.00 4.93
395 396 9.885743 CAATTAAACAAATAGCGATAAAACTGC 57.114 29.630 0.00 0.00 0.00 4.40
396 397 7.713792 TTAAACAAATAGCGATAAAACTGCG 57.286 32.000 0.00 0.00 0.00 5.18
397 398 5.539582 AACAAATAGCGATAAAACTGCGA 57.460 34.783 0.00 0.00 0.00 5.10
398 399 5.539582 ACAAATAGCGATAAAACTGCGAA 57.460 34.783 0.00 0.00 0.00 4.70
399 400 6.119144 ACAAATAGCGATAAAACTGCGAAT 57.881 33.333 0.00 0.00 0.00 3.34
400 401 7.241663 ACAAATAGCGATAAAACTGCGAATA 57.758 32.000 0.00 0.00 0.00 1.75
401 402 7.861630 ACAAATAGCGATAAAACTGCGAATAT 58.138 30.769 0.00 0.00 0.00 1.28
404 405 5.330271 AGCGATAAAACTGCGAATATCAC 57.670 39.130 0.00 0.00 0.00 3.06
405 406 4.211374 AGCGATAAAACTGCGAATATCACC 59.789 41.667 0.00 0.00 0.00 4.02
406 407 4.610680 GCGATAAAACTGCGAATATCACCC 60.611 45.833 0.00 0.00 0.00 4.61
407 408 4.084013 CGATAAAACTGCGAATATCACCCC 60.084 45.833 0.00 0.00 0.00 4.95
408 409 1.663695 AAACTGCGAATATCACCCCG 58.336 50.000 0.00 0.00 0.00 5.73
409 410 0.814010 AACTGCGAATATCACCCCGC 60.814 55.000 0.00 0.00 46.82 6.13
410 411 1.961277 CTGCGAATATCACCCCGCC 60.961 63.158 0.00 0.00 46.18 6.13
411 412 2.110213 GCGAATATCACCCCGCCA 59.890 61.111 0.00 0.00 41.59 5.69
412 413 1.302511 GCGAATATCACCCCGCCAT 60.303 57.895 0.00 0.00 41.59 4.40
414 415 0.034756 CGAATATCACCCCGCCATCA 59.965 55.000 0.00 0.00 0.00 3.07
415 416 1.813513 GAATATCACCCCGCCATCAG 58.186 55.000 0.00 0.00 0.00 2.90
416 417 0.401738 AATATCACCCCGCCATCAGG 59.598 55.000 0.00 0.00 38.23 3.86
418 419 1.407656 TATCACCCCGCCATCAGGTC 61.408 60.000 0.00 0.00 37.19 3.85
420 421 2.610859 ACCCCGCCATCAGGTCTT 60.611 61.111 0.00 0.00 37.19 3.01
421 422 2.190578 CCCCGCCATCAGGTCTTC 59.809 66.667 0.00 0.00 37.19 2.87
422 423 2.370445 CCCCGCCATCAGGTCTTCT 61.370 63.158 0.00 0.00 37.19 2.85
423 424 1.144936 CCCGCCATCAGGTCTTCTC 59.855 63.158 0.00 0.00 37.19 2.87
427 428 1.809271 CGCCATCAGGTCTTCTCATGG 60.809 57.143 0.00 0.00 37.63 3.66
429 430 2.744494 GCCATCAGGTCTTCTCATGGTC 60.744 54.545 0.00 0.00 37.02 4.02
430 431 2.502947 CCATCAGGTCTTCTCATGGTCA 59.497 50.000 0.00 0.00 31.01 4.02
431 432 3.529533 CATCAGGTCTTCTCATGGTCAC 58.470 50.000 0.00 0.00 0.00 3.67
432 433 2.608623 TCAGGTCTTCTCATGGTCACA 58.391 47.619 0.00 0.00 0.00 3.58
433 434 2.972021 TCAGGTCTTCTCATGGTCACAA 59.028 45.455 0.00 0.00 0.00 3.33
434 435 3.070018 CAGGTCTTCTCATGGTCACAAC 58.930 50.000 0.00 0.00 0.00 3.32
435 436 2.069273 GGTCTTCTCATGGTCACAACG 58.931 52.381 0.00 0.00 0.00 4.10
437 438 3.390135 GTCTTCTCATGGTCACAACGAA 58.610 45.455 0.00 0.00 0.00 3.85
438 439 3.807622 GTCTTCTCATGGTCACAACGAAA 59.192 43.478 0.00 0.00 0.00 3.46
439 440 4.452455 GTCTTCTCATGGTCACAACGAAAT 59.548 41.667 0.00 0.00 0.00 2.17
440 441 5.637810 GTCTTCTCATGGTCACAACGAAATA 59.362 40.000 0.00 0.00 0.00 1.40
441 442 6.313905 GTCTTCTCATGGTCACAACGAAATAT 59.686 38.462 0.00 0.00 0.00 1.28
442 443 6.535150 TCTTCTCATGGTCACAACGAAATATC 59.465 38.462 0.00 0.00 0.00 1.63
458 459 5.901884 CGAAATATCGGTCTAATGTTTGTGC 59.098 40.000 0.00 0.00 45.32 4.57
460 461 1.434555 TCGGTCTAATGTTTGTGCGG 58.565 50.000 0.00 0.00 0.00 5.69
462 463 0.179200 GGTCTAATGTTTGTGCGGCG 60.179 55.000 0.51 0.51 0.00 6.46
463 464 0.793861 GTCTAATGTTTGTGCGGCGA 59.206 50.000 12.98 0.00 0.00 5.54
465 466 1.396648 TCTAATGTTTGTGCGGCGATG 59.603 47.619 12.98 0.00 0.00 3.84
467 468 0.595588 AATGTTTGTGCGGCGATGAA 59.404 45.000 12.98 0.00 0.00 2.57
469 470 1.281353 GTTTGTGCGGCGATGAACA 59.719 52.632 12.98 6.03 0.00 3.18
470 471 0.317436 GTTTGTGCGGCGATGAACAA 60.317 50.000 12.98 12.26 0.00 2.83
484 485 4.448395 CGATGAACAAGTGTACGGGTAAAA 59.552 41.667 0.00 0.00 0.00 1.52
486 487 4.768583 TGAACAAGTGTACGGGTAAAACT 58.231 39.130 0.00 0.00 0.00 2.66
488 489 3.469739 ACAAGTGTACGGGTAAAACTGG 58.530 45.455 0.00 0.00 0.00 4.00
491 492 2.105306 AGTGTACGGGTAAAACTGGCTT 59.895 45.455 0.00 0.00 0.00 4.35
492 493 2.481568 GTGTACGGGTAAAACTGGCTTC 59.518 50.000 0.00 0.00 0.00 3.86
493 494 2.369532 TGTACGGGTAAAACTGGCTTCT 59.630 45.455 0.00 0.00 0.00 2.85
494 495 3.577848 TGTACGGGTAAAACTGGCTTCTA 59.422 43.478 0.00 0.00 0.00 2.10
546 547 3.449377 ACGTTGTTCCAAGGGATTGTTTT 59.551 39.130 2.28 0.00 0.00 2.43
570 571 1.386533 GGGCATGAGACAAGTGATGG 58.613 55.000 0.00 0.00 0.00 3.51
578 579 1.009829 GACAAGTGATGGTCGATGGC 58.990 55.000 0.00 0.00 0.00 4.40
586 587 4.760047 GGTCGATGGCGTGGTGCT 62.760 66.667 0.00 0.00 45.43 4.40
589 590 2.125713 CGATGGCGTGGTGCTGTA 60.126 61.111 0.00 0.00 45.43 2.74
620 621 1.072266 AGTTCACCTGGTTGGGCATA 58.928 50.000 0.00 0.00 41.11 3.14
621 622 1.640670 AGTTCACCTGGTTGGGCATAT 59.359 47.619 0.00 0.00 41.11 1.78
639 640 5.039333 GCATATGCTTTGGTTTTAGCTCAG 58.961 41.667 20.64 0.00 38.22 3.35
649 650 3.026694 GTTTTAGCTCAGGATTGCCCAT 58.973 45.455 0.00 0.00 37.41 4.00
650 651 3.386932 TTTAGCTCAGGATTGCCCATT 57.613 42.857 0.00 0.00 37.41 3.16
651 652 2.645838 TAGCTCAGGATTGCCCATTC 57.354 50.000 0.00 0.00 37.41 2.67
652 653 0.465097 AGCTCAGGATTGCCCATTCG 60.465 55.000 0.00 0.00 37.41 3.34
653 654 1.450531 GCTCAGGATTGCCCATTCGG 61.451 60.000 0.00 0.00 37.41 4.30
654 655 0.107017 CTCAGGATTGCCCATTCGGT 60.107 55.000 0.00 0.00 37.41 4.69
662 682 0.897863 TGCCCATTCGGTTTCCTTGG 60.898 55.000 0.00 0.00 0.00 3.61
669 689 2.613506 CGGTTTCCTTGGGTCGCAC 61.614 63.158 0.00 0.00 0.00 5.34
670 690 1.527380 GGTTTCCTTGGGTCGCACA 60.527 57.895 0.00 0.00 0.00 4.57
679 743 3.788766 GGTCGCACATGGTCGCAC 61.789 66.667 0.00 1.13 0.00 5.34
694 758 2.434331 CACCGGCCTTCCTCCAAA 59.566 61.111 0.00 0.00 0.00 3.28
698 762 1.374947 CGGCCTTCCTCCAAAGACA 59.625 57.895 0.00 0.00 0.00 3.41
702 766 2.493675 GGCCTTCCTCCAAAGACATTTC 59.506 50.000 0.00 0.00 0.00 2.17
712 776 5.005740 TCCAAAGACATTTCAGTCCATCTG 58.994 41.667 0.00 0.00 44.85 2.90
741 836 1.995066 ATCCACCATCCGGCTGACA 60.995 57.895 6.92 0.00 34.57 3.58
767 862 3.869272 GCCAATCAGAGCACGCGG 61.869 66.667 12.47 0.00 0.00 6.46
1438 3846 1.299620 GCAATCCATGTCCATGCGC 60.300 57.895 0.00 0.00 37.49 6.09
1448 3856 2.512286 CCATGCGCCGTGTCAGAT 60.512 61.111 4.18 0.00 0.00 2.90
1449 3857 1.227234 CCATGCGCCGTGTCAGATA 60.227 57.895 4.18 0.00 0.00 1.98
1450 3858 1.490693 CCATGCGCCGTGTCAGATAC 61.491 60.000 4.18 0.00 0.00 2.24
1451 3859 1.588932 ATGCGCCGTGTCAGATACG 60.589 57.895 12.50 12.50 40.98 3.06
1488 3906 3.181506 GCTGAGTTCATCGGTGGAAAATC 60.182 47.826 0.00 0.00 36.58 2.17
1613 4046 5.620738 TGGAAATGAAAATGTTGGTTCCA 57.379 34.783 0.00 0.00 40.45 3.53
1625 4058 4.385825 TGTTGGTTCCAGTTCTCATACAC 58.614 43.478 0.00 0.00 0.00 2.90
1630 4063 1.067142 TCCAGTTCTCATACACGTGCC 60.067 52.381 17.22 0.00 0.00 5.01
1641 4074 1.080569 CACGTGCCTTTGAATGCCC 60.081 57.895 0.82 0.00 0.00 5.36
1656 4089 1.048601 TGCCCGATTCTCCCTGTATC 58.951 55.000 0.00 0.00 0.00 2.24
1739 4176 1.584175 TTTCAAGCCGCGTGTTCTTA 58.416 45.000 4.92 0.00 0.00 2.10
1749 4186 2.604914 CGCGTGTTCTTATGCTCTGATT 59.395 45.455 0.00 0.00 0.00 2.57
1750 4187 3.062639 CGCGTGTTCTTATGCTCTGATTT 59.937 43.478 0.00 0.00 0.00 2.17
1898 4487 5.673068 GCTCTGAACTGCAAACATACTGATG 60.673 44.000 0.00 0.00 39.16 3.07
1900 4489 3.191162 TGAACTGCAAACATACTGATGGC 59.809 43.478 0.00 0.00 37.39 4.40
1925 4554 3.886123 ACAAGTTACTTGGTGTCTTGCT 58.114 40.909 26.09 2.03 44.81 3.91
1956 4585 0.239347 CAGGTTCAGAAAAGGCTGCG 59.761 55.000 0.00 0.00 35.86 5.18
2003 4632 1.875420 TTGGTTGCATGCATCACCCG 61.875 55.000 29.94 0.00 0.00 5.28
2041 4689 4.437390 CGCACCAGAACATTTTGTATCTCC 60.437 45.833 0.00 0.00 0.00 3.71
2063 4711 2.019156 GCTATTCCTGGTTCTGCCACC 61.019 57.143 0.00 0.00 43.61 4.61
2078 4726 1.557443 CCACCGTCGAAACTGCAGAC 61.557 60.000 23.35 6.86 0.00 3.51
2082 4730 1.284982 CGTCGAAACTGCAGACTGGG 61.285 60.000 23.35 5.47 33.10 4.45
2097 4745 2.361104 GGGTCGGCCATTGCTTGA 60.361 61.111 9.07 0.00 37.74 3.02
2107 4755 3.812053 GGCCATTGCTTGAGTAGAGTATG 59.188 47.826 0.00 0.00 37.74 2.39
2167 4821 4.578871 TGTGTCCTATCTCAAACATGTGG 58.421 43.478 0.00 0.00 0.00 4.17
2195 4849 1.934220 GCCGGTTTTAGCCAGCTTCC 61.934 60.000 1.90 0.00 0.00 3.46
2201 4855 3.119352 GGTTTTAGCCAGCTTCCATCTTG 60.119 47.826 0.00 0.00 0.00 3.02
2202 4856 3.439857 TTTAGCCAGCTTCCATCTTGT 57.560 42.857 0.00 0.00 0.00 3.16
2220 4875 9.764363 CCATCTTGTAGTAGCTTAAATGATACA 57.236 33.333 0.00 0.00 31.92 2.29
2258 4913 1.818674 CAGTATTCTGGTTGGTTGCCC 59.181 52.381 0.00 0.00 37.97 5.36
2259 4914 1.182667 GTATTCTGGTTGGTTGCCCC 58.817 55.000 0.00 0.00 0.00 5.80
2287 4945 2.362397 TGATAAGCACGAGATGGACTCC 59.638 50.000 0.00 0.00 42.18 3.85
2296 4954 0.538516 AGATGGACTCCGGGATCTCG 60.539 60.000 8.39 8.39 0.00 4.04
2330 4988 3.554324 TCGTTCAGTTCAGCTTTGTGTAC 59.446 43.478 0.00 0.00 0.00 2.90
2338 4996 2.038033 TCAGCTTTGTGTACCTACCACC 59.962 50.000 0.00 0.00 0.00 4.61
2341 4999 2.409975 CTTTGTGTACCTACCACCACG 58.590 52.381 0.00 0.00 0.00 4.94
2387 5239 9.917887 ATTATCTTCAGATCTCCAAATCAGTTT 57.082 29.630 0.00 0.00 36.05 2.66
2388 5240 9.745018 TTATCTTCAGATCTCCAAATCAGTTTT 57.255 29.630 0.00 0.00 36.05 2.43
2389 5241 7.678947 TCTTCAGATCTCCAAATCAGTTTTC 57.321 36.000 0.00 0.00 0.00 2.29
2390 5242 6.656693 TCTTCAGATCTCCAAATCAGTTTTCC 59.343 38.462 0.00 0.00 0.00 3.13
2391 5243 6.131972 TCAGATCTCCAAATCAGTTTTCCT 57.868 37.500 0.00 0.00 0.00 3.36
2392 5244 6.176183 TCAGATCTCCAAATCAGTTTTCCTC 58.824 40.000 0.00 0.00 0.00 3.71
2393 5245 5.942236 CAGATCTCCAAATCAGTTTTCCTCA 59.058 40.000 0.00 0.00 0.00 3.86
2394 5246 5.942826 AGATCTCCAAATCAGTTTTCCTCAC 59.057 40.000 0.00 0.00 0.00 3.51
2395 5247 5.047566 TCTCCAAATCAGTTTTCCTCACA 57.952 39.130 0.00 0.00 0.00 3.58
2396 5248 5.065914 TCTCCAAATCAGTTTTCCTCACAG 58.934 41.667 0.00 0.00 0.00 3.66
2397 5249 5.047566 TCCAAATCAGTTTTCCTCACAGA 57.952 39.130 0.00 0.00 0.00 3.41
2398 5250 5.445069 TCCAAATCAGTTTTCCTCACAGAA 58.555 37.500 0.00 0.00 0.00 3.02
2399 5251 5.890985 TCCAAATCAGTTTTCCTCACAGAAA 59.109 36.000 0.00 0.00 33.98 2.52
2400 5252 6.379703 TCCAAATCAGTTTTCCTCACAGAAAA 59.620 34.615 0.00 0.00 42.07 2.29
2401 5253 7.041107 CCAAATCAGTTTTCCTCACAGAAAAA 58.959 34.615 1.31 0.00 44.88 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.175990 CCTTTTACAGGGAGCAACAAACTAATA 59.824 37.037 0.00 0.00 39.39 0.98
2 3 6.015434 CCTTTTACAGGGAGCAACAAACTAAT 60.015 38.462 0.00 0.00 39.39 1.73
3 4 5.300792 CCTTTTACAGGGAGCAACAAACTAA 59.699 40.000 0.00 0.00 39.39 2.24
6 7 3.634910 TCCTTTTACAGGGAGCAACAAAC 59.365 43.478 0.00 0.00 44.12 2.93
7 8 3.904717 TCCTTTTACAGGGAGCAACAAA 58.095 40.909 0.00 0.00 44.12 2.83
9 10 3.806949 ATCCTTTTACAGGGAGCAACA 57.193 42.857 0.00 0.00 44.12 3.33
10 11 6.775594 AATTATCCTTTTACAGGGAGCAAC 57.224 37.500 0.00 0.00 44.12 4.17
12 13 7.310361 CCAAAAATTATCCTTTTACAGGGAGCA 60.310 37.037 0.00 0.00 44.12 4.26
13 14 7.041721 CCAAAAATTATCCTTTTACAGGGAGC 58.958 38.462 0.00 0.00 44.12 4.70
14 15 8.134202 ACCAAAAATTATCCTTTTACAGGGAG 57.866 34.615 0.00 0.00 44.12 4.30
15 16 7.953493 AGACCAAAAATTATCCTTTTACAGGGA 59.047 33.333 0.00 0.00 44.12 4.20
76 77 9.707957 TCAATTGTAACCCTATTGTAATGGAAT 57.292 29.630 5.13 0.00 37.49 3.01
77 78 9.184523 CTCAATTGTAACCCTATTGTAATGGAA 57.815 33.333 5.13 0.00 37.49 3.53
80 81 8.840321 CCTCTCAATTGTAACCCTATTGTAATG 58.160 37.037 5.13 0.00 37.49 1.90
81 82 7.502561 GCCTCTCAATTGTAACCCTATTGTAAT 59.497 37.037 5.13 0.00 37.49 1.89
82 83 6.826741 GCCTCTCAATTGTAACCCTATTGTAA 59.173 38.462 5.13 0.00 37.49 2.41
86 87 5.191722 TCTGCCTCTCAATTGTAACCCTATT 59.808 40.000 5.13 0.00 0.00 1.73
87 88 4.721776 TCTGCCTCTCAATTGTAACCCTAT 59.278 41.667 5.13 0.00 0.00 2.57
88 89 4.101114 TCTGCCTCTCAATTGTAACCCTA 58.899 43.478 5.13 0.00 0.00 3.53
89 90 2.912956 TCTGCCTCTCAATTGTAACCCT 59.087 45.455 5.13 0.00 0.00 4.34
90 91 3.350219 TCTGCCTCTCAATTGTAACCC 57.650 47.619 5.13 0.00 0.00 4.11
91 92 4.327680 ACTTCTGCCTCTCAATTGTAACC 58.672 43.478 5.13 0.00 0.00 2.85
92 93 5.948992 AACTTCTGCCTCTCAATTGTAAC 57.051 39.130 5.13 0.00 0.00 2.50
94 95 5.869579 AGAAACTTCTGCCTCTCAATTGTA 58.130 37.500 5.13 0.00 35.89 2.41
95 96 4.723309 AGAAACTTCTGCCTCTCAATTGT 58.277 39.130 5.13 0.00 35.89 2.71
97 98 8.951243 GTATTAAGAAACTTCTGCCTCTCAATT 58.049 33.333 0.00 0.00 37.65 2.32
98 99 8.103305 TGTATTAAGAAACTTCTGCCTCTCAAT 58.897 33.333 0.00 0.00 37.65 2.57
100 101 7.004555 TGTATTAAGAAACTTCTGCCTCTCA 57.995 36.000 0.00 0.00 37.65 3.27
101 102 7.011857 CCATGTATTAAGAAACTTCTGCCTCTC 59.988 40.741 0.00 0.00 37.65 3.20
102 103 6.825721 CCATGTATTAAGAAACTTCTGCCTCT 59.174 38.462 0.00 0.00 37.65 3.69
103 104 6.599638 ACCATGTATTAAGAAACTTCTGCCTC 59.400 38.462 0.00 0.00 37.65 4.70
104 105 6.375455 CACCATGTATTAAGAAACTTCTGCCT 59.625 38.462 0.00 0.00 37.65 4.75
105 106 6.404734 CCACCATGTATTAAGAAACTTCTGCC 60.405 42.308 0.00 0.00 37.65 4.85
106 107 6.151144 ACCACCATGTATTAAGAAACTTCTGC 59.849 38.462 0.00 0.00 37.65 4.26
107 108 7.148239 GGACCACCATGTATTAAGAAACTTCTG 60.148 40.741 0.00 0.00 35.32 3.02
108 109 6.884836 GGACCACCATGTATTAAGAAACTTCT 59.115 38.462 0.00 0.00 36.11 2.85
110 111 6.790319 AGGACCACCATGTATTAAGAAACTT 58.210 36.000 0.00 0.00 38.94 2.66
111 112 6.215636 AGAGGACCACCATGTATTAAGAAACT 59.784 38.462 0.00 0.00 38.94 2.66
112 113 6.415573 AGAGGACCACCATGTATTAAGAAAC 58.584 40.000 0.00 0.00 38.94 2.78
117 118 8.978472 GCTATATAGAGGACCACCATGTATTAA 58.022 37.037 14.16 0.00 38.94 1.40
118 119 7.563924 GGCTATATAGAGGACCACCATGTATTA 59.436 40.741 14.16 0.00 38.94 0.98
119 120 6.384305 GGCTATATAGAGGACCACCATGTATT 59.616 42.308 14.16 0.00 38.94 1.89
121 122 5.222463 TGGCTATATAGAGGACCACCATGTA 60.222 44.000 14.16 0.00 38.94 2.29
123 124 4.081420 GTGGCTATATAGAGGACCACCATG 60.081 50.000 19.18 0.00 41.34 3.66
124 125 4.097418 GTGGCTATATAGAGGACCACCAT 58.903 47.826 19.18 0.00 41.34 3.55
125 126 3.116900 TGTGGCTATATAGAGGACCACCA 60.117 47.826 23.61 13.68 45.53 4.17
126 127 3.258622 GTGTGGCTATATAGAGGACCACC 59.741 52.174 23.61 15.84 45.53 4.61
128 129 4.193240 TGTGTGGCTATATAGAGGACCA 57.807 45.455 14.16 8.18 0.00 4.02
129 130 4.344102 TGTTGTGTGGCTATATAGAGGACC 59.656 45.833 14.16 5.64 0.00 4.46
130 131 5.531122 TGTTGTGTGGCTATATAGAGGAC 57.469 43.478 14.16 6.61 0.00 3.85
132 133 5.702670 CCATTGTTGTGTGGCTATATAGAGG 59.297 44.000 14.16 0.00 0.00 3.69
133 134 6.291377 ACCATTGTTGTGTGGCTATATAGAG 58.709 40.000 14.16 0.00 39.13 2.43
134 135 6.247229 ACCATTGTTGTGTGGCTATATAGA 57.753 37.500 14.16 0.00 39.13 1.98
135 136 7.217200 AGTACCATTGTTGTGTGGCTATATAG 58.783 38.462 5.30 5.30 39.13 1.31
138 139 5.188948 AGAGTACCATTGTTGTGTGGCTATA 59.811 40.000 0.00 0.00 39.13 1.31
139 140 4.019321 AGAGTACCATTGTTGTGTGGCTAT 60.019 41.667 0.00 0.00 39.13 2.97
140 141 3.326588 AGAGTACCATTGTTGTGTGGCTA 59.673 43.478 0.00 0.00 39.13 3.93
141 142 2.106511 AGAGTACCATTGTTGTGTGGCT 59.893 45.455 0.00 0.00 39.13 4.75
142 143 2.504367 AGAGTACCATTGTTGTGTGGC 58.496 47.619 0.00 0.00 39.13 5.01
143 144 5.245531 ACATAGAGTACCATTGTTGTGTGG 58.754 41.667 0.00 0.00 41.35 4.17
144 145 9.594478 TTATACATAGAGTACCATTGTTGTGTG 57.406 33.333 0.00 0.00 35.05 3.82
146 147 9.594478 TGTTATACATAGAGTACCATTGTTGTG 57.406 33.333 0.00 0.00 35.05 3.33
147 148 9.817809 CTGTTATACATAGAGTACCATTGTTGT 57.182 33.333 0.00 0.00 35.05 3.32
148 149 9.817809 ACTGTTATACATAGAGTACCATTGTTG 57.182 33.333 0.00 0.00 35.05 3.33
158 159 9.032624 ACCACTGTTAACTGTTATACATAGAGT 57.967 33.333 14.75 0.00 0.00 3.24
159 160 9.517609 GACCACTGTTAACTGTTATACATAGAG 57.482 37.037 14.75 1.35 0.00 2.43
160 161 8.472413 GGACCACTGTTAACTGTTATACATAGA 58.528 37.037 14.75 0.00 0.00 1.98
161 162 8.475639 AGGACCACTGTTAACTGTTATACATAG 58.524 37.037 14.75 2.61 0.00 2.23
162 163 8.370266 AGGACCACTGTTAACTGTTATACATA 57.630 34.615 14.75 0.00 0.00 2.29
163 164 7.038587 TGAGGACCACTGTTAACTGTTATACAT 60.039 37.037 14.75 5.79 0.00 2.29
164 165 6.268158 TGAGGACCACTGTTAACTGTTATACA 59.732 38.462 14.75 7.90 0.00 2.29
166 167 6.921486 TGAGGACCACTGTTAACTGTTATA 57.079 37.500 14.75 0.00 0.00 0.98
167 168 5.818678 TGAGGACCACTGTTAACTGTTAT 57.181 39.130 14.75 6.73 0.00 1.89
168 169 5.818678 ATGAGGACCACTGTTAACTGTTA 57.181 39.130 14.75 0.00 0.00 2.41
169 170 4.706842 ATGAGGACCACTGTTAACTGTT 57.293 40.909 14.75 2.72 0.00 3.16
171 172 6.037786 TCTTATGAGGACCACTGTTAACTG 57.962 41.667 10.63 10.63 0.00 3.16
172 173 6.681729 TTCTTATGAGGACCACTGTTAACT 57.318 37.500 7.22 0.00 0.00 2.24
173 174 7.923414 ATTTCTTATGAGGACCACTGTTAAC 57.077 36.000 0.00 0.00 0.00 2.01
176 177 7.004086 TCAAATTTCTTATGAGGACCACTGTT 58.996 34.615 0.00 0.00 0.00 3.16
178 179 7.555554 AGATCAAATTTCTTATGAGGACCACTG 59.444 37.037 0.00 0.00 0.00 3.66
179 180 7.637511 AGATCAAATTTCTTATGAGGACCACT 58.362 34.615 0.00 0.00 0.00 4.00
180 181 7.012799 GGAGATCAAATTTCTTATGAGGACCAC 59.987 40.741 0.00 0.00 0.00 4.16
182 183 6.203723 CGGAGATCAAATTTCTTATGAGGACC 59.796 42.308 0.00 0.00 0.00 4.46
183 184 6.293135 GCGGAGATCAAATTTCTTATGAGGAC 60.293 42.308 0.00 0.00 0.00 3.85
184 185 5.760253 GCGGAGATCAAATTTCTTATGAGGA 59.240 40.000 0.00 0.00 0.00 3.71
185 186 5.762218 AGCGGAGATCAAATTTCTTATGAGG 59.238 40.000 0.00 0.00 0.00 3.86
186 187 6.857777 AGCGGAGATCAAATTTCTTATGAG 57.142 37.500 0.00 0.00 0.00 2.90
187 188 7.500992 AGTAGCGGAGATCAAATTTCTTATGA 58.499 34.615 0.00 0.00 0.00 2.15
188 189 7.721286 AGTAGCGGAGATCAAATTTCTTATG 57.279 36.000 0.00 0.00 0.00 1.90
189 190 9.832445 TTTAGTAGCGGAGATCAAATTTCTTAT 57.168 29.630 0.00 0.00 0.00 1.73
190 191 9.832445 ATTTAGTAGCGGAGATCAAATTTCTTA 57.168 29.630 0.00 0.00 0.00 2.10
191 192 8.616076 CATTTAGTAGCGGAGATCAAATTTCTT 58.384 33.333 0.00 0.00 0.00 2.52
192 193 7.254932 GCATTTAGTAGCGGAGATCAAATTTCT 60.255 37.037 0.00 0.00 0.00 2.52
193 194 6.853362 GCATTTAGTAGCGGAGATCAAATTTC 59.147 38.462 0.00 0.00 0.00 2.17
194 195 6.238759 GGCATTTAGTAGCGGAGATCAAATTT 60.239 38.462 0.00 0.00 0.00 1.82
196 197 4.757149 GGCATTTAGTAGCGGAGATCAAAT 59.243 41.667 0.00 0.00 0.00 2.32
198 199 3.494398 GGGCATTTAGTAGCGGAGATCAA 60.494 47.826 0.00 0.00 0.00 2.57
200 201 2.037251 TGGGCATTTAGTAGCGGAGATC 59.963 50.000 0.00 0.00 0.00 2.75
202 203 1.491668 TGGGCATTTAGTAGCGGAGA 58.508 50.000 0.00 0.00 0.00 3.71
203 204 2.550830 ATGGGCATTTAGTAGCGGAG 57.449 50.000 0.00 0.00 0.00 4.63
205 206 2.420022 GCATATGGGCATTTAGTAGCGG 59.580 50.000 4.56 0.00 0.00 5.52
206 207 2.420022 GGCATATGGGCATTTAGTAGCG 59.580 50.000 4.56 0.00 42.77 4.26
207 208 2.420022 CGGCATATGGGCATTTAGTAGC 59.580 50.000 4.56 0.00 43.60 3.58
208 209 3.937814 TCGGCATATGGGCATTTAGTAG 58.062 45.455 4.56 0.00 43.60 2.57
209 210 4.568072 ATCGGCATATGGGCATTTAGTA 57.432 40.909 4.56 0.00 43.60 1.82
211 212 4.487948 CAAATCGGCATATGGGCATTTAG 58.512 43.478 4.56 1.17 43.60 1.85
212 213 3.257873 CCAAATCGGCATATGGGCATTTA 59.742 43.478 4.56 0.00 43.60 1.40
215 216 1.203038 TCCAAATCGGCATATGGGCAT 60.203 47.619 4.56 0.00 43.60 4.40
216 217 0.184692 TCCAAATCGGCATATGGGCA 59.815 50.000 4.56 0.00 43.60 5.36
217 218 0.598065 GTCCAAATCGGCATATGGGC 59.402 55.000 4.56 0.00 39.06 5.36
218 219 1.979855 TGTCCAAATCGGCATATGGG 58.020 50.000 4.56 0.00 33.66 4.00
219 220 2.287788 GCTTGTCCAAATCGGCATATGG 60.288 50.000 4.56 0.00 33.14 2.74
221 222 1.956477 GGCTTGTCCAAATCGGCATAT 59.044 47.619 0.00 0.00 34.01 1.78
222 223 1.340502 TGGCTTGTCCAAATCGGCATA 60.341 47.619 0.00 0.00 43.21 3.14
223 224 0.611618 TGGCTTGTCCAAATCGGCAT 60.612 50.000 0.00 0.00 43.21 4.40
224 225 1.228398 TGGCTTGTCCAAATCGGCA 60.228 52.632 0.00 0.00 43.21 5.69
233 234 0.033208 TGATGGGGAATGGCTTGTCC 60.033 55.000 0.00 0.00 0.00 4.02
235 236 2.302733 GTTTTGATGGGGAATGGCTTGT 59.697 45.455 0.00 0.00 0.00 3.16
236 237 2.355007 GGTTTTGATGGGGAATGGCTTG 60.355 50.000 0.00 0.00 0.00 4.01
238 239 1.571955 GGTTTTGATGGGGAATGGCT 58.428 50.000 0.00 0.00 0.00 4.75
239 240 0.175531 CGGTTTTGATGGGGAATGGC 59.824 55.000 0.00 0.00 0.00 4.40
243 244 1.144093 ACTGTCGGTTTTGATGGGGAA 59.856 47.619 0.00 0.00 0.00 3.97
244 245 0.768622 ACTGTCGGTTTTGATGGGGA 59.231 50.000 0.00 0.00 0.00 4.81
245 246 0.881118 CACTGTCGGTTTTGATGGGG 59.119 55.000 0.00 0.00 0.00 4.96
246 247 0.240945 GCACTGTCGGTTTTGATGGG 59.759 55.000 0.00 0.00 0.00 4.00
249 250 1.523758 GAGGCACTGTCGGTTTTGAT 58.476 50.000 0.00 0.00 41.55 2.57
251 252 1.841663 CGGAGGCACTGTCGGTTTTG 61.842 60.000 0.00 0.00 41.55 2.44
252 253 1.597027 CGGAGGCACTGTCGGTTTT 60.597 57.895 0.00 0.00 41.55 2.43
253 254 2.030562 CGGAGGCACTGTCGGTTT 59.969 61.111 0.00 0.00 41.55 3.27
254 255 2.915659 TCGGAGGCACTGTCGGTT 60.916 61.111 0.00 0.00 41.55 4.44
255 256 3.374402 CTCGGAGGCACTGTCGGT 61.374 66.667 0.00 0.00 41.55 4.69
256 257 4.135153 CCTCGGAGGCACTGTCGG 62.135 72.222 11.83 0.00 41.55 4.79
257 258 3.057547 CTCCTCGGAGGCACTGTCG 62.058 68.421 19.48 0.00 41.55 4.35
259 260 2.118513 ACTCCTCGGAGGCACTGT 59.881 61.111 19.48 11.65 45.88 3.55
265 266 1.479709 ACAATCAGACTCCTCGGAGG 58.520 55.000 18.25 18.25 45.88 4.30
267 268 3.081710 TGTACAATCAGACTCCTCGGA 57.918 47.619 0.00 0.00 0.00 4.55
268 269 3.868757 TTGTACAATCAGACTCCTCGG 57.131 47.619 3.59 0.00 0.00 4.63
269 270 7.203218 TGATTATTGTACAATCAGACTCCTCG 58.797 38.462 24.00 0.00 37.46 4.63
278 279 6.262944 GTGATGGCCTGATTATTGTACAATCA 59.737 38.462 24.00 14.43 39.48 2.57
279 280 6.488006 AGTGATGGCCTGATTATTGTACAATC 59.512 38.462 24.00 12.11 33.78 2.67
280 281 6.367983 AGTGATGGCCTGATTATTGTACAAT 58.632 36.000 23.80 23.80 34.93 2.71
281 282 5.754782 AGTGATGGCCTGATTATTGTACAA 58.245 37.500 11.41 11.41 0.00 2.41
283 284 6.128172 GCATAGTGATGGCCTGATTATTGTAC 60.128 42.308 3.32 0.00 33.26 2.90
284 285 5.939883 GCATAGTGATGGCCTGATTATTGTA 59.060 40.000 3.32 0.00 33.26 2.41
285 286 4.763793 GCATAGTGATGGCCTGATTATTGT 59.236 41.667 3.32 0.00 33.26 2.71
287 288 5.008331 CAGCATAGTGATGGCCTGATTATT 58.992 41.667 3.32 0.00 33.26 1.40
288 289 4.586884 CAGCATAGTGATGGCCTGATTAT 58.413 43.478 3.32 0.00 33.26 1.28
290 291 2.860009 CAGCATAGTGATGGCCTGATT 58.140 47.619 3.32 0.00 33.26 2.57
291 292 1.544982 GCAGCATAGTGATGGCCTGAT 60.545 52.381 3.32 0.00 33.75 2.90
292 293 0.179037 GCAGCATAGTGATGGCCTGA 60.179 55.000 3.32 0.00 33.75 3.86
293 294 0.464916 TGCAGCATAGTGATGGCCTG 60.465 55.000 3.32 0.00 33.75 4.85
294 295 0.179026 CTGCAGCATAGTGATGGCCT 60.179 55.000 3.32 0.00 33.75 5.19
295 296 1.793134 GCTGCAGCATAGTGATGGCC 61.793 60.000 33.36 0.00 41.59 5.36
297 298 1.939597 CGCTGCAGCATAGTGATGG 59.060 57.895 36.03 14.34 42.21 3.51
298 299 1.278937 GCGCTGCAGCATAGTGATG 59.721 57.895 36.03 19.13 42.21 3.07
299 300 1.890979 GGCGCTGCAGCATAGTGAT 60.891 57.895 36.03 0.00 42.21 3.06
300 301 2.512286 GGCGCTGCAGCATAGTGA 60.512 61.111 36.03 0.00 42.21 3.41
301 302 1.721664 ATTGGCGCTGCAGCATAGTG 61.722 55.000 36.03 21.30 42.21 2.74
302 303 1.452651 ATTGGCGCTGCAGCATAGT 60.453 52.632 36.03 16.45 42.21 2.12
303 304 1.008881 CATTGGCGCTGCAGCATAG 60.009 57.895 36.03 22.03 42.21 2.23
304 305 3.112842 CATTGGCGCTGCAGCATA 58.887 55.556 36.03 19.67 42.21 3.14
305 306 4.508128 GCATTGGCGCTGCAGCAT 62.508 61.111 36.03 20.43 42.21 3.79
308 309 4.789075 GTGGCATTGGCGCTGCAG 62.789 66.667 20.01 10.11 41.47 4.41
320 321 2.669744 TTTTGATGCAGGGGGTGGCA 62.670 55.000 0.00 0.00 45.23 4.92
323 324 1.066716 CATGTTTTGATGCAGGGGGTG 60.067 52.381 0.00 0.00 0.00 4.61
324 325 1.269012 CATGTTTTGATGCAGGGGGT 58.731 50.000 0.00 0.00 0.00 4.95
326 327 3.511146 AGTTACATGTTTTGATGCAGGGG 59.489 43.478 2.30 0.00 0.00 4.79
327 328 4.380867 GGAGTTACATGTTTTGATGCAGGG 60.381 45.833 2.30 0.00 0.00 4.45
328 329 4.672542 CGGAGTTACATGTTTTGATGCAGG 60.673 45.833 2.30 0.00 0.00 4.85
345 346 5.737413 AATGACGCATTGGAGACGGAGTT 62.737 47.826 4.59 0.00 34.50 3.01
346 347 4.308149 AATGACGCATTGGAGACGGAGT 62.308 50.000 4.59 0.00 36.47 3.85
347 348 0.179100 ATGACGCATTGGAGACGGAG 60.179 55.000 0.00 0.00 0.00 4.63
349 350 1.593006 GTAATGACGCATTGGAGACGG 59.407 52.381 13.17 0.00 35.54 4.79
350 351 2.267426 TGTAATGACGCATTGGAGACG 58.733 47.619 13.17 0.00 35.54 4.18
353 354 7.026562 TGTTTAATTGTAATGACGCATTGGAG 58.973 34.615 13.17 0.00 35.54 3.86
355 356 7.573916 TTGTTTAATTGTAATGACGCATTGG 57.426 32.000 13.17 0.00 35.54 3.16
358 359 9.019764 GCTATTTGTTTAATTGTAATGACGCAT 57.980 29.630 0.00 0.00 0.00 4.73
359 360 7.217258 CGCTATTTGTTTAATTGTAATGACGCA 59.783 33.333 0.00 0.00 0.00 5.24
360 361 7.427030 TCGCTATTTGTTTAATTGTAATGACGC 59.573 33.333 0.00 0.00 0.00 5.19
361 362 8.814733 TCGCTATTTGTTTAATTGTAATGACG 57.185 30.769 0.00 0.00 0.00 4.35
369 370 9.885743 GCAGTTTTATCGCTATTTGTTTAATTG 57.114 29.630 0.00 0.00 0.00 2.32
370 371 8.794406 CGCAGTTTTATCGCTATTTGTTTAATT 58.206 29.630 0.00 0.00 0.00 1.40
371 372 8.178964 TCGCAGTTTTATCGCTATTTGTTTAAT 58.821 29.630 0.00 0.00 0.00 1.40
372 373 7.519843 TCGCAGTTTTATCGCTATTTGTTTAA 58.480 30.769 0.00 0.00 0.00 1.52
373 374 7.062906 TCGCAGTTTTATCGCTATTTGTTTA 57.937 32.000 0.00 0.00 0.00 2.01
374 375 5.933790 TCGCAGTTTTATCGCTATTTGTTT 58.066 33.333 0.00 0.00 0.00 2.83
375 376 5.539582 TCGCAGTTTTATCGCTATTTGTT 57.460 34.783 0.00 0.00 0.00 2.83
376 377 5.539582 TTCGCAGTTTTATCGCTATTTGT 57.460 34.783 0.00 0.00 0.00 2.83
377 378 8.009409 TGATATTCGCAGTTTTATCGCTATTTG 58.991 33.333 0.00 0.00 0.00 2.32
378 379 8.009974 GTGATATTCGCAGTTTTATCGCTATTT 58.990 33.333 0.00 0.00 31.83 1.40
379 380 7.360101 GGTGATATTCGCAGTTTTATCGCTATT 60.360 37.037 0.00 0.00 33.91 1.73
380 381 6.090898 GGTGATATTCGCAGTTTTATCGCTAT 59.909 38.462 0.00 0.00 33.91 2.97
381 382 5.404366 GGTGATATTCGCAGTTTTATCGCTA 59.596 40.000 0.00 0.00 33.91 4.26
382 383 4.211374 GGTGATATTCGCAGTTTTATCGCT 59.789 41.667 0.00 0.00 33.91 4.93
383 384 4.455124 GGTGATATTCGCAGTTTTATCGC 58.545 43.478 0.00 0.00 33.09 4.58
385 386 4.084013 CGGGGTGATATTCGCAGTTTTATC 60.084 45.833 0.00 0.00 0.00 1.75
386 387 3.813166 CGGGGTGATATTCGCAGTTTTAT 59.187 43.478 0.00 0.00 0.00 1.40
388 389 2.014128 CGGGGTGATATTCGCAGTTTT 58.986 47.619 0.00 0.00 0.00 2.43
390 391 0.814010 GCGGGGTGATATTCGCAGTT 60.814 55.000 0.00 0.00 46.33 3.16
391 392 1.227556 GCGGGGTGATATTCGCAGT 60.228 57.895 0.00 0.00 46.33 4.40
392 393 3.642755 GCGGGGTGATATTCGCAG 58.357 61.111 0.00 0.04 46.33 5.18
394 395 1.298859 GATGGCGGGGTGATATTCGC 61.299 60.000 0.00 0.00 46.35 4.70
395 396 0.034756 TGATGGCGGGGTGATATTCG 59.965 55.000 0.00 0.00 0.00 3.34
396 397 1.611673 CCTGATGGCGGGGTGATATTC 60.612 57.143 0.00 0.00 36.87 1.75
397 398 0.401738 CCTGATGGCGGGGTGATATT 59.598 55.000 0.00 0.00 36.87 1.28
398 399 0.768221 ACCTGATGGCGGGGTGATAT 60.768 55.000 0.00 0.00 45.41 1.63
399 400 1.383943 ACCTGATGGCGGGGTGATA 60.384 57.895 0.00 0.00 45.41 2.15
400 401 2.692368 ACCTGATGGCGGGGTGAT 60.692 61.111 0.00 0.00 45.41 3.06
401 402 3.399181 GACCTGATGGCGGGGTGA 61.399 66.667 0.00 0.00 45.41 4.02
404 405 2.190578 GAAGACCTGATGGCGGGG 59.809 66.667 0.00 0.00 45.41 5.73
405 406 1.144936 GAGAAGACCTGATGGCGGG 59.855 63.158 0.00 0.00 46.62 6.13
406 407 0.467384 ATGAGAAGACCTGATGGCGG 59.533 55.000 0.00 0.00 36.63 6.13
407 408 1.579698 CATGAGAAGACCTGATGGCG 58.420 55.000 0.00 0.00 33.56 5.69
408 409 1.964552 CCATGAGAAGACCTGATGGC 58.035 55.000 0.00 0.00 46.91 4.40
410 411 3.055602 TGTGACCATGAGAAGACCTGATG 60.056 47.826 0.00 0.00 36.43 3.07
411 412 3.176411 TGTGACCATGAGAAGACCTGAT 58.824 45.455 0.00 0.00 0.00 2.90
412 413 2.608623 TGTGACCATGAGAAGACCTGA 58.391 47.619 0.00 0.00 0.00 3.86
414 415 2.289072 CGTTGTGACCATGAGAAGACCT 60.289 50.000 0.00 0.00 0.00 3.85
415 416 2.069273 CGTTGTGACCATGAGAAGACC 58.931 52.381 0.00 0.00 0.00 3.85
416 417 3.026630 TCGTTGTGACCATGAGAAGAC 57.973 47.619 0.00 0.00 0.00 3.01
418 419 6.508563 CGATATTTCGTTGTGACCATGAGAAG 60.509 42.308 0.00 0.00 40.53 2.85
420 421 4.803613 CGATATTTCGTTGTGACCATGAGA 59.196 41.667 0.00 0.00 40.53 3.27
421 422 4.025730 CCGATATTTCGTTGTGACCATGAG 60.026 45.833 4.86 0.00 43.97 2.90
422 423 3.868661 CCGATATTTCGTTGTGACCATGA 59.131 43.478 4.86 0.00 43.97 3.07
423 424 3.621268 ACCGATATTTCGTTGTGACCATG 59.379 43.478 4.86 0.00 43.97 3.66
427 428 6.255020 ACATTAGACCGATATTTCGTTGTGAC 59.745 38.462 4.86 0.00 43.97 3.67
429 430 6.583912 ACATTAGACCGATATTTCGTTGTG 57.416 37.500 4.86 0.00 43.97 3.33
430 431 7.118680 ACAAACATTAGACCGATATTTCGTTGT 59.881 33.333 4.86 2.96 43.97 3.32
431 432 7.425309 CACAAACATTAGACCGATATTTCGTTG 59.575 37.037 4.86 2.41 43.97 4.10
432 433 7.461107 CACAAACATTAGACCGATATTTCGTT 58.539 34.615 4.86 0.00 43.97 3.85
433 434 6.456449 GCACAAACATTAGACCGATATTTCGT 60.456 38.462 4.86 0.00 43.97 3.85
434 435 5.901884 GCACAAACATTAGACCGATATTTCG 59.098 40.000 0.00 0.00 45.08 3.46
435 436 5.901884 CGCACAAACATTAGACCGATATTTC 59.098 40.000 0.00 0.00 0.00 2.17
437 438 4.272504 CCGCACAAACATTAGACCGATATT 59.727 41.667 0.00 0.00 0.00 1.28
438 439 3.807622 CCGCACAAACATTAGACCGATAT 59.192 43.478 0.00 0.00 0.00 1.63
439 440 3.191669 CCGCACAAACATTAGACCGATA 58.808 45.455 0.00 0.00 0.00 2.92
440 441 2.006888 CCGCACAAACATTAGACCGAT 58.993 47.619 0.00 0.00 0.00 4.18
441 442 1.434555 CCGCACAAACATTAGACCGA 58.565 50.000 0.00 0.00 0.00 4.69
442 443 0.179200 GCCGCACAAACATTAGACCG 60.179 55.000 0.00 0.00 0.00 4.79
443 444 0.179200 CGCCGCACAAACATTAGACC 60.179 55.000 0.00 0.00 0.00 3.85
444 445 0.793861 TCGCCGCACAAACATTAGAC 59.206 50.000 0.00 0.00 0.00 2.59
445 446 1.396648 CATCGCCGCACAAACATTAGA 59.603 47.619 0.00 0.00 0.00 2.10
446 447 1.396648 TCATCGCCGCACAAACATTAG 59.603 47.619 0.00 0.00 0.00 1.73
448 449 0.595588 TTCATCGCCGCACAAACATT 59.404 45.000 0.00 0.00 0.00 2.71
449 450 0.109781 GTTCATCGCCGCACAAACAT 60.110 50.000 0.00 0.00 0.00 2.71
450 451 1.281353 GTTCATCGCCGCACAAACA 59.719 52.632 0.00 0.00 0.00 2.83
452 453 0.040514 CTTGTTCATCGCCGCACAAA 60.041 50.000 0.00 0.00 0.00 2.83
453 454 1.163420 ACTTGTTCATCGCCGCACAA 61.163 50.000 0.00 0.00 0.00 3.33
455 456 1.154413 CACTTGTTCATCGCCGCAC 60.154 57.895 0.00 0.00 0.00 5.34
458 459 0.365523 CGTACACTTGTTCATCGCCG 59.634 55.000 0.00 0.00 0.00 6.46
460 461 0.719465 CCCGTACACTTGTTCATCGC 59.281 55.000 0.00 0.00 0.00 4.58
462 463 5.467735 AGTTTTACCCGTACACTTGTTCATC 59.532 40.000 0.00 0.00 0.00 2.92
463 464 5.237779 CAGTTTTACCCGTACACTTGTTCAT 59.762 40.000 0.00 0.00 0.00 2.57
465 466 4.024641 CCAGTTTTACCCGTACACTTGTTC 60.025 45.833 0.00 0.00 0.00 3.18
467 468 3.469739 CCAGTTTTACCCGTACACTTGT 58.530 45.455 0.00 0.00 0.00 3.16
469 470 2.105306 AGCCAGTTTTACCCGTACACTT 59.895 45.455 0.00 0.00 0.00 3.16
470 471 1.695788 AGCCAGTTTTACCCGTACACT 59.304 47.619 0.00 0.00 0.00 3.55
484 485 6.126940 TGCATTTTCTCTCTATAGAAGCCAGT 60.127 38.462 3.57 0.00 36.85 4.00
486 487 6.051717 GTGCATTTTCTCTCTATAGAAGCCA 58.948 40.000 3.57 0.00 36.85 4.75
488 489 6.292061 CGTGTGCATTTTCTCTCTATAGAAGC 60.292 42.308 3.57 0.00 36.85 3.86
491 492 5.592054 CCGTGTGCATTTTCTCTCTATAGA 58.408 41.667 1.69 1.69 0.00 1.98
492 493 4.210120 GCCGTGTGCATTTTCTCTCTATAG 59.790 45.833 0.00 0.00 40.77 1.31
493 494 4.119862 GCCGTGTGCATTTTCTCTCTATA 58.880 43.478 0.00 0.00 40.77 1.31
494 495 2.939103 GCCGTGTGCATTTTCTCTCTAT 59.061 45.455 0.00 0.00 40.77 1.98
532 533 2.466846 CCCCCTAAAACAATCCCTTGG 58.533 52.381 0.00 0.00 36.64 3.61
570 571 2.829043 TACAGCACCACGCCATCGAC 62.829 60.000 0.00 0.00 44.04 4.20
586 587 3.202906 GTGAACTGGTTTCTGTGCTACA 58.797 45.455 0.00 0.00 34.97 2.74
589 590 1.212935 AGGTGAACTGGTTTCTGTGCT 59.787 47.619 0.00 0.00 34.97 4.40
620 621 3.766545 TCCTGAGCTAAAACCAAAGCAT 58.233 40.909 0.00 0.00 41.32 3.79
621 622 3.222173 TCCTGAGCTAAAACCAAAGCA 57.778 42.857 0.00 0.00 41.32 3.91
639 640 0.459899 GGAAACCGAATGGGCAATCC 59.540 55.000 0.00 0.00 40.62 3.01
649 650 1.598685 GCGACCCAAGGAAACCGAA 60.599 57.895 0.00 0.00 0.00 4.30
650 651 2.031465 GCGACCCAAGGAAACCGA 59.969 61.111 0.00 0.00 0.00 4.69
651 652 2.281208 TGCGACCCAAGGAAACCG 60.281 61.111 0.00 0.00 0.00 4.44
652 653 0.893727 ATGTGCGACCCAAGGAAACC 60.894 55.000 0.00 0.00 0.00 3.27
653 654 0.240945 CATGTGCGACCCAAGGAAAC 59.759 55.000 0.00 0.00 0.00 2.78
654 655 0.893270 CCATGTGCGACCCAAGGAAA 60.893 55.000 0.00 0.00 0.00 3.13
662 682 3.788766 GTGCGACCATGTGCGACC 61.789 66.667 8.42 0.00 0.00 4.79
670 690 4.778143 GAAGGCCGGTGCGACCAT 62.778 66.667 1.90 0.00 38.47 3.55
679 743 1.377333 GTCTTTGGAGGAAGGCCGG 60.377 63.158 0.00 0.00 39.96 6.13
681 745 2.222227 AATGTCTTTGGAGGAAGGCC 57.778 50.000 0.00 0.00 30.24 5.19
688 752 5.251764 AGATGGACTGAAATGTCTTTGGAG 58.748 41.667 0.00 0.00 37.16 3.86
702 766 4.864334 GGCGCCCCAGATGGACTG 62.864 72.222 18.11 0.00 45.36 3.51
741 836 1.065564 GCTCTGATTGGCTGAAGAGGT 60.066 52.381 0.00 0.00 37.28 3.85
767 862 2.691252 ATCCGTGGGAAGGGGGAC 60.691 66.667 0.00 0.00 34.34 4.46
888 3256 1.578583 CGTTAAATAGGAGGCACCGG 58.421 55.000 0.00 0.00 44.74 5.28
1438 3846 2.225963 GGGATCTACGTATCTGACACGG 59.774 54.545 13.47 0.00 43.59 4.94
1448 3856 3.117776 TCAGCCTAACAGGGATCTACGTA 60.118 47.826 0.00 0.00 35.37 3.57
1449 3857 2.032620 CAGCCTAACAGGGATCTACGT 58.967 52.381 0.00 0.00 35.37 3.57
1450 3858 2.294791 CTCAGCCTAACAGGGATCTACG 59.705 54.545 0.00 0.00 35.37 3.51
1451 3859 3.301274 ACTCAGCCTAACAGGGATCTAC 58.699 50.000 0.00 0.00 35.37 2.59
1488 3906 2.159841 CGCACATTCTGAAACACTACGG 60.160 50.000 0.00 0.00 0.00 4.02
1613 4046 3.067106 CAAAGGCACGTGTATGAGAACT 58.933 45.455 18.38 0.38 0.00 3.01
1630 4063 1.678101 GGGAGAATCGGGCATTCAAAG 59.322 52.381 1.06 0.00 43.27 2.77
1641 4074 2.029470 GGCTCAGATACAGGGAGAATCG 60.029 54.545 0.00 0.00 34.37 3.34
1656 4089 3.439476 CACATTCAAGAGGAAAGGCTCAG 59.561 47.826 0.00 0.00 39.39 3.35
1720 4157 1.584175 TAAGAACACGCGGCTTGAAA 58.416 45.000 13.81 0.00 0.00 2.69
1723 4160 0.521242 GCATAAGAACACGCGGCTTG 60.521 55.000 12.47 4.78 0.00 4.01
1831 4272 1.341606 GAGCATATTAGCGGCTCGTC 58.658 55.000 5.39 0.00 43.83 4.20
1898 4487 3.473625 ACACCAAGTAACTTGTAGTGCC 58.526 45.455 0.00 0.00 39.58 5.01
1900 4489 5.277345 GCAAGACACCAAGTAACTTGTAGTG 60.277 44.000 0.00 0.00 39.58 2.74
1925 4554 8.413229 CCTTTTCTGAACCTGTAAAATCTGAAA 58.587 33.333 0.00 0.00 37.71 2.69
1956 4585 3.134127 GGCACGATGTGGAAGCCC 61.134 66.667 0.00 0.00 39.42 5.19
2003 4632 2.287909 TGGTGCGTTGTTTAGGAATTGC 60.288 45.455 0.00 0.00 0.00 3.56
2041 4689 1.065199 TGGCAGAACCAGGAATAGCAG 60.065 52.381 0.00 0.00 46.36 4.24
2063 4711 1.284982 CCCAGTCTGCAGTTTCGACG 61.285 60.000 14.67 1.36 33.10 5.12
2082 4730 1.009829 CTACTCAAGCAATGGCCGAC 58.990 55.000 0.00 0.00 42.56 4.79
2097 4745 6.109359 GTCCAATGTTTCAGCATACTCTACT 58.891 40.000 0.00 0.00 0.00 2.57
2107 4755 4.232221 CTGATTGTGTCCAATGTTTCAGC 58.768 43.478 0.00 0.00 41.37 4.26
2201 4855 9.582431 TTGACACTGTATCATTTAAGCTACTAC 57.418 33.333 0.00 0.00 0.00 2.73
2220 4875 9.125026 AGAATACTGATTTCAAACTTTGACACT 57.875 29.630 3.56 0.00 39.87 3.55
2258 4913 1.524621 CGTGCTTATCAGGGGCAGG 60.525 63.158 0.00 0.00 36.62 4.85
2259 4914 0.531532 CTCGTGCTTATCAGGGGCAG 60.532 60.000 0.00 0.00 36.62 4.85
2287 4945 3.978687 AGCTTATTAACACGAGATCCCG 58.021 45.455 0.00 0.00 0.00 5.14
2296 4954 6.462073 TGAACTGAACGAGCTTATTAACAC 57.538 37.500 0.00 0.00 0.00 3.32
2330 4988 2.149803 TTGCTCGACGTGGTGGTAGG 62.150 60.000 0.00 0.00 0.00 3.18
2338 4996 0.508641 CAGGAAACTTGCTCGACGTG 59.491 55.000 0.00 0.00 40.21 4.49
2341 4999 3.299340 TCTACAGGAAACTTGCTCGAC 57.701 47.619 0.00 0.00 40.21 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.