Multiple sequence alignment - TraesCS6A01G099600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G099600 | chr6A | 100.000 | 3916 | 0 | 0 | 1 | 3916 | 67132780 | 67128865 | 0.000000e+00 | 7232.0 |
1 | TraesCS6A01G099600 | chr6A | 100.000 | 2924 | 0 | 0 | 4157 | 7080 | 67128624 | 67125701 | 0.000000e+00 | 5400.0 |
2 | TraesCS6A01G099600 | chr6A | 100.000 | 31 | 0 | 0 | 6691 | 6721 | 557926699 | 557926669 | 2.760000e-04 | 58.4 |
3 | TraesCS6A01G099600 | chr6B | 94.959 | 2440 | 99 | 15 | 1 | 2437 | 123715322 | 123712904 | 0.000000e+00 | 3803.0 |
4 | TraesCS6A01G099600 | chr6B | 92.397 | 2157 | 119 | 22 | 4186 | 6314 | 123704794 | 123702655 | 0.000000e+00 | 3033.0 |
5 | TraesCS6A01G099600 | chr6B | 91.723 | 1027 | 70 | 10 | 2446 | 3469 | 123712823 | 123711809 | 0.000000e+00 | 1411.0 |
6 | TraesCS6A01G099600 | chr6B | 94.000 | 400 | 15 | 3 | 3465 | 3860 | 123705190 | 123704796 | 1.310000e-166 | 597.0 |
7 | TraesCS6A01G099600 | chr6B | 90.654 | 321 | 12 | 7 | 6342 | 6644 | 123702658 | 123702338 | 1.840000e-110 | 411.0 |
8 | TraesCS6A01G099600 | chr6B | 92.241 | 116 | 7 | 2 | 6849 | 6962 | 123702200 | 123702085 | 5.680000e-36 | 163.0 |
9 | TraesCS6A01G099600 | chr6B | 87.755 | 49 | 3 | 1 | 6720 | 6765 | 408680860 | 408680812 | 4.000000e-03 | 54.7 |
10 | TraesCS6A01G099600 | chr6D | 97.212 | 2080 | 51 | 7 | 358 | 2437 | 47938346 | 47940418 | 0.000000e+00 | 3513.0 |
11 | TraesCS6A01G099600 | chr6D | 96.026 | 1409 | 38 | 5 | 4160 | 5554 | 47941946 | 47943350 | 0.000000e+00 | 2276.0 |
12 | TraesCS6A01G099600 | chr6D | 91.520 | 1474 | 82 | 10 | 2446 | 3916 | 47940487 | 47941920 | 0.000000e+00 | 1989.0 |
13 | TraesCS6A01G099600 | chr6D | 94.671 | 638 | 19 | 3 | 5538 | 6162 | 47943368 | 47944003 | 0.000000e+00 | 976.0 |
14 | TraesCS6A01G099600 | chr6D | 95.028 | 362 | 18 | 0 | 1 | 362 | 47937862 | 47938223 | 2.870000e-158 | 569.0 |
15 | TraesCS6A01G099600 | chr6D | 91.946 | 298 | 13 | 6 | 6343 | 6639 | 47944186 | 47944473 | 2.380000e-109 | 407.0 |
16 | TraesCS6A01G099600 | chr6D | 91.975 | 162 | 13 | 0 | 6187 | 6348 | 47944000 | 47944161 | 1.990000e-55 | 228.0 |
17 | TraesCS6A01G099600 | chr6D | 79.377 | 257 | 38 | 10 | 1844 | 2087 | 149166877 | 149167131 | 4.390000e-37 | 167.0 |
18 | TraesCS6A01G099600 | chr6D | 81.529 | 157 | 26 | 3 | 1847 | 2001 | 209103292 | 209103137 | 7.460000e-25 | 126.0 |
19 | TraesCS6A01G099600 | chr6D | 96.154 | 52 | 2 | 0 | 6749 | 6800 | 47944630 | 47944681 | 1.270000e-12 | 86.1 |
20 | TraesCS6A01G099600 | chr6D | 100.000 | 27 | 0 | 0 | 6800 | 6826 | 47944698 | 47944724 | 4.600000e-02 | 51.0 |
21 | TraesCS6A01G099600 | chr1D | 82.803 | 157 | 24 | 3 | 1847 | 2001 | 127859202 | 127859047 | 3.440000e-28 | 137.0 |
22 | TraesCS6A01G099600 | chr1D | 82.166 | 157 | 25 | 3 | 1847 | 2001 | 105731453 | 105731298 | 1.600000e-26 | 132.0 |
23 | TraesCS6A01G099600 | chr4D | 81.875 | 160 | 26 | 3 | 1844 | 2001 | 106259449 | 106259607 | 1.600000e-26 | 132.0 |
24 | TraesCS6A01G099600 | chr3D | 81.875 | 160 | 26 | 3 | 1844 | 2001 | 345804299 | 345804457 | 1.600000e-26 | 132.0 |
25 | TraesCS6A01G099600 | chr3D | 77.733 | 247 | 27 | 11 | 1866 | 2096 | 468943847 | 468944081 | 7.460000e-25 | 126.0 |
26 | TraesCS6A01G099600 | chr3D | 78.495 | 93 | 14 | 6 | 6676 | 6764 | 292887830 | 292887740 | 1.000000e-03 | 56.5 |
27 | TraesCS6A01G099600 | chr2D | 81.098 | 164 | 27 | 4 | 1841 | 2001 | 521813896 | 521814058 | 2.070000e-25 | 128.0 |
28 | TraesCS6A01G099600 | chr2D | 83.784 | 111 | 12 | 4 | 6659 | 6765 | 513458552 | 513458660 | 4.520000e-17 | 100.0 |
29 | TraesCS6A01G099600 | chr2A | 88.182 | 110 | 9 | 2 | 6659 | 6765 | 657520729 | 657520837 | 2.070000e-25 | 128.0 |
30 | TraesCS6A01G099600 | chr2A | 76.446 | 242 | 29 | 11 | 1866 | 2091 | 154095899 | 154095670 | 9.710000e-19 | 106.0 |
31 | TraesCS6A01G099600 | chr1A | 72.658 | 395 | 102 | 6 | 1002 | 1393 | 577469438 | 577469829 | 7.460000e-25 | 126.0 |
32 | TraesCS6A01G099600 | chr1A | 77.165 | 254 | 29 | 12 | 1866 | 2103 | 108409173 | 108409413 | 3.470000e-23 | 121.0 |
33 | TraesCS6A01G099600 | chr3B | 77.551 | 245 | 26 | 11 | 1866 | 2093 | 476218560 | 476218792 | 3.470000e-23 | 121.0 |
34 | TraesCS6A01G099600 | chr7A | 77.016 | 248 | 26 | 13 | 1866 | 2096 | 273269151 | 273268918 | 5.800000e-21 | 113.0 |
35 | TraesCS6A01G099600 | chr7A | 89.011 | 91 | 7 | 3 | 2005 | 2094 | 364025239 | 364025151 | 7.510000e-20 | 110.0 |
36 | TraesCS6A01G099600 | chr7A | 80.519 | 154 | 12 | 7 | 1956 | 2093 | 668815974 | 668815823 | 1.260000e-17 | 102.0 |
37 | TraesCS6A01G099600 | chr7A | 72.840 | 324 | 70 | 15 | 4925 | 5237 | 598217971 | 598217655 | 2.100000e-15 | 95.3 |
38 | TraesCS6A01G099600 | chr7D | 72.468 | 316 | 73 | 12 | 4929 | 5237 | 520828856 | 520828548 | 9.780000e-14 | 89.8 |
39 | TraesCS6A01G099600 | chr7B | 72.152 | 316 | 74 | 12 | 4929 | 5237 | 553884951 | 553884643 | 4.550000e-12 | 84.2 |
40 | TraesCS6A01G099600 | chr7B | 81.481 | 108 | 12 | 8 | 6662 | 6764 | 734291103 | 734290999 | 1.640000e-11 | 82.4 |
41 | TraesCS6A01G099600 | chr7B | 78.761 | 113 | 18 | 6 | 6662 | 6770 | 613255692 | 613255802 | 3.540000e-08 | 71.3 |
42 | TraesCS6A01G099600 | chr5D | 80.000 | 95 | 15 | 3 | 6671 | 6762 | 498715972 | 498715879 | 4.580000e-07 | 67.6 |
43 | TraesCS6A01G099600 | chr5B | 78.788 | 99 | 13 | 7 | 6671 | 6764 | 582392661 | 582392566 | 7.670000e-05 | 60.2 |
44 | TraesCS6A01G099600 | chr1B | 84.483 | 58 | 5 | 4 | 6710 | 6764 | 114434164 | 114434108 | 4.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G099600 | chr6A | 67125701 | 67132780 | 7079 | True | 6316.000000 | 7232 | 100.000 | 1 | 7080 | 2 | chr6A.!!$R2 | 7079 |
1 | TraesCS6A01G099600 | chr6B | 123711809 | 123715322 | 3513 | True | 2607.000000 | 3803 | 93.341 | 1 | 3469 | 2 | chr6B.!!$R3 | 3468 |
2 | TraesCS6A01G099600 | chr6B | 123702085 | 123705190 | 3105 | True | 1051.000000 | 3033 | 92.323 | 3465 | 6962 | 4 | chr6B.!!$R2 | 3497 |
3 | TraesCS6A01G099600 | chr6D | 47937862 | 47944724 | 6862 | False | 1121.677778 | 3513 | 94.948 | 1 | 6826 | 9 | chr6D.!!$F2 | 6825 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
466 | 594 | 1.189752 | TGCTCAAAGTTTGTTGGCCA | 58.810 | 45.000 | 15.08 | 0.0 | 0.00 | 5.36 | F |
1418 | 1550 | 0.675083 | TAGTTCAGAAACCGTCGGCA | 59.325 | 50.000 | 12.28 | 0.0 | 35.92 | 5.69 | F |
3194 | 3410 | 0.104304 | AAACTGTCGACGTGCCTTCT | 59.896 | 50.000 | 11.62 | 0.0 | 0.00 | 2.85 | F |
3270 | 3486 | 0.639392 | ACCTAGTCCTCAGAGCCCAT | 59.361 | 55.000 | 0.00 | 0.0 | 0.00 | 4.00 | F |
4706 | 4954 | 2.398588 | TCGTAATGAGAAGGCCAGGAT | 58.601 | 47.619 | 5.01 | 0.0 | 0.00 | 3.24 | F |
5200 | 5452 | 5.579904 | CCACAGATGCTTCAGGATTATATCG | 59.420 | 44.000 | 2.07 | 0.0 | 0.00 | 2.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2241 | 2378 | 0.250553 | ATGTGCCCGTTCGGAAAGAA | 60.251 | 50.000 | 13.08 | 0.00 | 36.31 | 2.52 | R |
3339 | 3556 | 0.037590 | AAGGTGGCAATTGCTCCGTA | 59.962 | 50.000 | 28.42 | 8.75 | 41.70 | 4.02 | R |
4532 | 4768 | 0.928229 | GAAGTCGTGCGTTTGTGAGT | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 | R |
5200 | 5452 | 1.341581 | ACTAGTCTGTCCTCCAGCTCC | 60.342 | 57.143 | 0.00 | 0.00 | 41.25 | 4.70 | R |
5640 | 5926 | 1.070758 | GTGCACAGACTCTTTCCCTGA | 59.929 | 52.381 | 13.17 | 0.00 | 0.00 | 3.86 | R |
6973 | 7445 | 0.038744 | CCCAACCAGACTTGAGCCAT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
145 | 146 | 4.142315 | GCAATCATGTGCTGTGGAGTATTT | 60.142 | 41.667 | 1.20 | 0.00 | 41.51 | 1.40 |
196 | 197 | 7.568349 | ACTGAATAATTCTCCATTCTAGCACA | 58.432 | 34.615 | 1.49 | 0.00 | 33.26 | 4.57 |
197 | 198 | 7.497249 | ACTGAATAATTCTCCATTCTAGCACAC | 59.503 | 37.037 | 1.49 | 0.00 | 33.26 | 3.82 |
220 | 221 | 7.560262 | ACACCTCATACTTGTATGTCTAGCTTA | 59.440 | 37.037 | 17.14 | 0.00 | 0.00 | 3.09 |
332 | 333 | 6.866770 | CCATTCTGAACATTGATTATGATGGC | 59.133 | 38.462 | 0.00 | 0.00 | 37.69 | 4.40 |
355 | 483 | 5.674318 | GCCATTTGCTTCAAATTATGTTGCC | 60.674 | 40.000 | 2.35 | 0.00 | 40.60 | 4.52 |
462 | 590 | 2.283351 | GCTGCTTGCTCAAAGTTTGTTG | 59.717 | 45.455 | 15.08 | 10.42 | 38.25 | 3.33 |
466 | 594 | 1.189752 | TGCTCAAAGTTTGTTGGCCA | 58.810 | 45.000 | 15.08 | 0.00 | 0.00 | 5.36 |
652 | 782 | 7.094508 | TCTGTTGTAAATTTGCTTCTTCACA | 57.905 | 32.000 | 7.80 | 0.00 | 0.00 | 3.58 |
742 | 872 | 7.947782 | TCATTTGGTAATCCCTCTTAGGTAT | 57.052 | 36.000 | 0.00 | 0.00 | 31.93 | 2.73 |
875 | 1007 | 9.682465 | GTAATTGACTACCTAGAATTTTCCCTT | 57.318 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
1223 | 1355 | 2.488153 | GCCACCCAAACATAGTTGAGAC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1305 | 1437 | 1.678627 | CTCATGGAGTCGGACCTACAG | 59.321 | 57.143 | 4.14 | 0.00 | 0.00 | 2.74 |
1319 | 1451 | 3.935828 | GACCTACAGAAAGTGATCCAAGC | 59.064 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
1350 | 1482 | 3.640407 | ACTGCAGGGCATCACCGT | 61.640 | 61.111 | 19.93 | 0.00 | 38.13 | 4.83 |
1352 | 1484 | 1.973281 | CTGCAGGGCATCACCGTTT | 60.973 | 57.895 | 5.57 | 0.00 | 38.13 | 3.60 |
1418 | 1550 | 0.675083 | TAGTTCAGAAACCGTCGGCA | 59.325 | 50.000 | 12.28 | 0.00 | 35.92 | 5.69 |
1514 | 1646 | 7.741785 | TCTCATGAAACCCTGTCTTACTTTTA | 58.258 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
1518 | 1650 | 6.065374 | TGAAACCCTGTCTTACTTTTATGCA | 58.935 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1524 | 1656 | 8.220559 | ACCCTGTCTTACTTTTATGCATATGAT | 58.779 | 33.333 | 7.36 | 0.02 | 0.00 | 2.45 |
1588 | 1721 | 4.154015 | CCGAGCAACATACTTGTCAATTCA | 59.846 | 41.667 | 0.00 | 0.00 | 34.06 | 2.57 |
1884 | 2017 | 1.247567 | CACACCTAAGGTTGGGCAAG | 58.752 | 55.000 | 0.00 | 0.00 | 31.02 | 4.01 |
2006 | 2139 | 4.540715 | CAAGATTCCCTTAGGCTCCAATT | 58.459 | 43.478 | 0.00 | 0.00 | 32.86 | 2.32 |
2007 | 2140 | 4.888626 | AGATTCCCTTAGGCTCCAATTT | 57.111 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
2008 | 2141 | 4.797743 | AGATTCCCTTAGGCTCCAATTTC | 58.202 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2009 | 2142 | 2.710096 | TCCCTTAGGCTCCAATTTCG | 57.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2073 | 2210 | 6.017440 | GCAAAGTGTGACATTGTTAGTCCTAA | 60.017 | 38.462 | 1.46 | 0.00 | 35.15 | 2.69 |
2103 | 2240 | 4.195416 | CAGCCCCTTAGTCTTCAATTCTC | 58.805 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
2119 | 2256 | 4.655762 | ATTCTCAGCGCACTATAGTCAA | 57.344 | 40.909 | 11.47 | 0.00 | 0.00 | 3.18 |
2130 | 2267 | 6.579292 | GCGCACTATAGTCAAATAGTACAGAG | 59.421 | 42.308 | 0.30 | 0.00 | 40.02 | 3.35 |
2160 | 2297 | 6.098982 | AGCCTCTTGCAGTACTAAATCTGTAT | 59.901 | 38.462 | 0.00 | 0.00 | 44.83 | 2.29 |
2280 | 2417 | 4.937620 | ACATAAGTGCTGGTCATTGTAGTG | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2294 | 2431 | 4.497473 | TTGTAGTGGAAGAAAAATGCCG | 57.503 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
2328 | 2465 | 1.369209 | CACACTGCCAAGAAACGCG | 60.369 | 57.895 | 3.53 | 3.53 | 0.00 | 6.01 |
2329 | 2466 | 1.522806 | ACACTGCCAAGAAACGCGA | 60.523 | 52.632 | 15.93 | 0.00 | 0.00 | 5.87 |
2437 | 2576 | 2.433446 | CTCAGCACCTTGGCACCT | 59.567 | 61.111 | 0.00 | 0.00 | 35.83 | 4.00 |
2438 | 2577 | 1.228367 | CTCAGCACCTTGGCACCTT | 60.228 | 57.895 | 0.00 | 0.00 | 35.83 | 3.50 |
2440 | 2579 | 2.203538 | AGCACCTTGGCACCTTGG | 60.204 | 61.111 | 0.00 | 0.00 | 35.83 | 3.61 |
2441 | 2580 | 3.994853 | GCACCTTGGCACCTTGGC | 61.995 | 66.667 | 0.00 | 0.00 | 44.03 | 4.52 |
2497 | 2708 | 0.788995 | GAGGATGATGATTGAGCGCG | 59.211 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
2597 | 2810 | 0.175302 | AGATGCTGGAGCGAGAAGTG | 59.825 | 55.000 | 0.00 | 0.00 | 45.83 | 3.16 |
2625 | 2838 | 1.812922 | CGAGTGCCAGACCTGATGC | 60.813 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
2632 | 2845 | 1.153765 | CAGACCTGATGCGCGAAGA | 60.154 | 57.895 | 12.10 | 0.00 | 0.00 | 2.87 |
2634 | 2847 | 1.446099 | GACCTGATGCGCGAAGACA | 60.446 | 57.895 | 12.10 | 2.95 | 0.00 | 3.41 |
2665 | 2878 | 0.445436 | CAGATGCGAGTTTGTCCTGC | 59.555 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2667 | 2880 | 1.648467 | GATGCGAGTTTGTCCTGCCC | 61.648 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2676 | 2889 | 3.403558 | GTCCTGCCCTCCTGGTCC | 61.404 | 72.222 | 0.00 | 0.00 | 36.04 | 4.46 |
2682 | 2895 | 2.365635 | CCCTCCTGGTCCCACGAT | 60.366 | 66.667 | 0.00 | 0.00 | 0.00 | 3.73 |
2694 | 2907 | 3.951115 | CCACGATGGGCATTGATTG | 57.049 | 52.632 | 0.00 | 0.00 | 32.67 | 2.67 |
2698 | 2911 | 0.756442 | CGATGGGCATTGATTGGGGT | 60.756 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2699 | 2912 | 1.043022 | GATGGGCATTGATTGGGGTC | 58.957 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2726 | 2939 | 1.446272 | CTCGCCTTTGGAGACGGTC | 60.446 | 63.158 | 0.00 | 0.00 | 33.27 | 4.79 |
2727 | 2940 | 2.154798 | CTCGCCTTTGGAGACGGTCA | 62.155 | 60.000 | 11.27 | 0.00 | 33.27 | 4.02 |
2728 | 2941 | 1.738099 | CGCCTTTGGAGACGGTCAG | 60.738 | 63.158 | 11.27 | 0.00 | 0.00 | 3.51 |
2729 | 2942 | 2.035442 | GCCTTTGGAGACGGTCAGC | 61.035 | 63.158 | 11.27 | 1.69 | 0.00 | 4.26 |
2730 | 2943 | 1.376037 | CCTTTGGAGACGGTCAGCC | 60.376 | 63.158 | 11.27 | 11.52 | 0.00 | 4.85 |
3002 | 3218 | 4.019501 | GGGTGCTTGAGATATCATGGATCT | 60.020 | 45.833 | 5.32 | 9.91 | 36.33 | 2.75 |
3004 | 3220 | 6.126825 | GGGTGCTTGAGATATCATGGATCTAT | 60.127 | 42.308 | 5.32 | 0.00 | 33.71 | 1.98 |
3007 | 3223 | 7.280428 | GTGCTTGAGATATCATGGATCTATTGG | 59.720 | 40.741 | 5.32 | 4.53 | 33.71 | 3.16 |
3039 | 3255 | 4.600576 | TTCGCTCACCGTGCAGCA | 62.601 | 61.111 | 17.51 | 0.00 | 35.15 | 4.41 |
3046 | 3262 | 2.009051 | CTCACCGTGCAGCAATTGATA | 58.991 | 47.619 | 10.34 | 0.00 | 0.00 | 2.15 |
3051 | 3267 | 2.095314 | CCGTGCAGCAATTGATAACACA | 60.095 | 45.455 | 21.72 | 6.77 | 0.00 | 3.72 |
3076 | 3292 | 1.482182 | CTGACTGCAGCAGGTACCATA | 59.518 | 52.381 | 26.38 | 3.72 | 35.51 | 2.74 |
3087 | 3303 | 1.060561 | AGGTACCATAGGGGCCAGATT | 60.061 | 52.381 | 15.94 | 0.00 | 42.05 | 2.40 |
3186 | 3402 | 0.776451 | CACGAAGGAAACTGTCGACG | 59.224 | 55.000 | 11.62 | 8.41 | 42.68 | 5.12 |
3194 | 3410 | 0.104304 | AAACTGTCGACGTGCCTTCT | 59.896 | 50.000 | 11.62 | 0.00 | 0.00 | 2.85 |
3270 | 3486 | 0.639392 | ACCTAGTCCTCAGAGCCCAT | 59.361 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3339 | 3556 | 3.022287 | CACACGTTTCGCCAAGCT | 58.978 | 55.556 | 0.00 | 0.00 | 0.00 | 3.74 |
3368 | 3585 | 3.423154 | GCCACCTTTCGCCTCACG | 61.423 | 66.667 | 0.00 | 0.00 | 45.62 | 4.35 |
3517 | 3734 | 3.069586 | CCACCACATATCGCTCTTAAGGA | 59.930 | 47.826 | 1.85 | 0.00 | 0.00 | 3.36 |
3541 | 3759 | 7.559897 | GGAGGTTAGAAATTCCCACATTAATCA | 59.440 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3564 | 3782 | 3.476552 | AGAGGAAAGCGACATTTCAACA | 58.523 | 40.909 | 9.46 | 0.00 | 40.29 | 3.33 |
3660 | 3878 | 9.674068 | TGTATAAGGATTACAACTGCATTTGTA | 57.326 | 29.630 | 21.73 | 21.73 | 40.29 | 2.41 |
3661 | 3879 | 9.931210 | GTATAAGGATTACAACTGCATTTGTAC | 57.069 | 33.333 | 24.39 | 15.86 | 40.80 | 2.90 |
3662 | 3880 | 5.545658 | AGGATTACAACTGCATTTGTACG | 57.454 | 39.130 | 24.39 | 0.29 | 40.80 | 3.67 |
3663 | 3881 | 5.001232 | AGGATTACAACTGCATTTGTACGT | 58.999 | 37.500 | 24.39 | 17.48 | 40.80 | 3.57 |
3762 | 3984 | 9.093458 | ACCACTCAGGAAATATCTTTGAAAAAT | 57.907 | 29.630 | 0.00 | 0.00 | 41.22 | 1.82 |
3788 | 4010 | 5.243060 | ACCTTTAGAAAGTACCCAAATGCAC | 59.757 | 40.000 | 0.00 | 0.00 | 34.20 | 4.57 |
3790 | 4012 | 3.237268 | AGAAAGTACCCAAATGCACCA | 57.763 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
3821 | 4043 | 6.134061 | GGCGAAAACTGAAGTAGTAAAGTTG | 58.866 | 40.000 | 0.00 | 0.00 | 39.18 | 3.16 |
3834 | 4056 | 7.949434 | AGTAGTAAAGTTGTAAGCAGTACAGT | 58.051 | 34.615 | 0.00 | 0.00 | 43.61 | 3.55 |
3862 | 4084 | 6.147656 | GCACCAATTTTCCTTTCTAAACATGG | 59.852 | 38.462 | 0.00 | 0.00 | 33.28 | 3.66 |
3879 | 4101 | 6.849588 | AACATGGAAATTTTGCTGAACTTC | 57.150 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4184 | 4406 | 3.973206 | TTCCTACATCACCATGAACGT | 57.027 | 42.857 | 0.00 | 0.00 | 33.72 | 3.99 |
4288 | 4510 | 3.617284 | ACCATTATTTCCTGGGACGAAC | 58.383 | 45.455 | 0.00 | 0.00 | 36.82 | 3.95 |
4361 | 4583 | 3.458118 | TGAAACCCTATCCCAGGTATGTG | 59.542 | 47.826 | 0.00 | 0.00 | 43.80 | 3.21 |
4367 | 4589 | 4.597507 | CCCTATCCCAGGTATGTGTACATT | 59.402 | 45.833 | 0.00 | 0.00 | 43.80 | 2.71 |
4381 | 4603 | 6.061022 | TGTGTACATTATCACCCATTCACT | 57.939 | 37.500 | 0.00 | 0.00 | 34.14 | 3.41 |
4482 | 4718 | 5.045286 | AGACTTGGCCACAGATAGAATTCTT | 60.045 | 40.000 | 14.36 | 1.45 | 0.00 | 2.52 |
4532 | 4768 | 2.637872 | CAGAACTACTTCCCCAACCTGA | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4577 | 4813 | 7.057894 | TGTGTGGTTGGTTCTCTAAGTAAATT | 58.942 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
4706 | 4954 | 2.398588 | TCGTAATGAGAAGGCCAGGAT | 58.601 | 47.619 | 5.01 | 0.00 | 0.00 | 3.24 |
4881 | 5130 | 6.749923 | AGAGTTCTTGCTTTTATGATGACC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
5077 | 5326 | 8.988060 | AGAGATCTGATATATCGAGAGGTAGAA | 58.012 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
5116 | 5365 | 8.924303 | AGTGTATGTTTTAGGCTGACTATATCA | 58.076 | 33.333 | 0.00 | 0.00 | 35.45 | 2.15 |
5200 | 5452 | 5.579904 | CCACAGATGCTTCAGGATTATATCG | 59.420 | 44.000 | 2.07 | 0.00 | 0.00 | 2.92 |
5351 | 5603 | 7.009083 | TCACATTTTGTTTTCACACAGAAATCG | 59.991 | 33.333 | 0.00 | 0.00 | 45.15 | 3.34 |
5640 | 5926 | 3.758755 | TCTGCACTCTTCTTCATGTGT | 57.241 | 42.857 | 0.00 | 0.00 | 33.44 | 3.72 |
5665 | 5951 | 2.687935 | GGAAAGAGTCTGTGCACCAAAA | 59.312 | 45.455 | 15.69 | 0.00 | 0.00 | 2.44 |
5671 | 5957 | 1.266989 | GTCTGTGCACCAAAAGGTAGC | 59.733 | 52.381 | 15.69 | 0.00 | 0.00 | 3.58 |
5698 | 5984 | 9.809096 | GATAATCAAGACTGTAACAATGAGAGA | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
5806 | 6092 | 1.277557 | AGCATTCCGAACTTCTGCTCT | 59.722 | 47.619 | 1.80 | 0.00 | 38.78 | 4.09 |
5873 | 6159 | 1.164662 | CGATGAGCATGAAGGCCTGG | 61.165 | 60.000 | 5.69 | 0.00 | 0.00 | 4.45 |
5896 | 6182 | 0.176219 | TACTCCCGGCACCAATTACG | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5945 | 6231 | 8.933807 | CAGGATCTTATAATTATCAGTGCACAG | 58.066 | 37.037 | 21.04 | 11.93 | 0.00 | 3.66 |
5965 | 6251 | 1.880271 | TCACTCTTCTCGTGACGACT | 58.120 | 50.000 | 2.39 | 0.00 | 36.54 | 4.18 |
5970 | 6256 | 1.060726 | CTTCTCGTGACGACTCGTGC | 61.061 | 60.000 | 9.27 | 0.84 | 41.37 | 5.34 |
6010 | 6300 | 6.245408 | ACCAATAGCCAATCTGTTTTCTGTA | 58.755 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6133 | 6440 | 1.706443 | GCAGCTCCAAATTTCAGCAC | 58.294 | 50.000 | 17.21 | 8.08 | 35.46 | 4.40 |
6134 | 6441 | 1.000060 | GCAGCTCCAAATTTCAGCACA | 60.000 | 47.619 | 17.21 | 0.00 | 35.46 | 4.57 |
6135 | 6442 | 2.546373 | GCAGCTCCAAATTTCAGCACAA | 60.546 | 45.455 | 17.21 | 0.00 | 35.46 | 3.33 |
6172 | 6479 | 2.947938 | CTTATGGGTCCCGGCAGCAG | 62.948 | 65.000 | 2.65 | 0.00 | 0.00 | 4.24 |
6175 | 6482 | 4.115199 | GGGTCCCGGCAGCAGAAT | 62.115 | 66.667 | 0.00 | 0.00 | 0.00 | 2.40 |
6177 | 6484 | 1.223487 | GGTCCCGGCAGCAGAATAA | 59.777 | 57.895 | 0.00 | 0.00 | 0.00 | 1.40 |
6179 | 6486 | 0.733150 | GTCCCGGCAGCAGAATAAAC | 59.267 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
6211 | 6521 | 0.463654 | AGGTGCTGCGAACTTCACAA | 60.464 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
6221 | 6531 | 3.242712 | GCGAACTTCACAACAACCATTTG | 59.757 | 43.478 | 0.00 | 0.00 | 38.83 | 2.32 |
6222 | 6532 | 3.796178 | CGAACTTCACAACAACCATTTGG | 59.204 | 43.478 | 0.00 | 0.00 | 37.00 | 3.28 |
6229 | 6539 | 6.279513 | TCACAACAACCATTTGGATTATCC | 57.720 | 37.500 | 3.91 | 3.91 | 37.00 | 2.59 |
6323 | 6633 | 3.926289 | GGTACCGTACCGTAAGAGC | 57.074 | 57.895 | 12.01 | 0.00 | 39.39 | 4.09 |
6329 | 6639 | 1.601430 | CCGTACCGTAAGAGCCTAGAC | 59.399 | 57.143 | 0.00 | 0.00 | 43.02 | 2.59 |
6330 | 6640 | 1.601430 | CGTACCGTAAGAGCCTAGACC | 59.399 | 57.143 | 0.00 | 0.00 | 43.02 | 3.85 |
6348 | 6658 | 1.614903 | ACCCGAAGAACATCGTGTGTA | 59.385 | 47.619 | 0.00 | 0.00 | 41.14 | 2.90 |
6360 | 6700 | 4.983538 | ACATCGTGTGTAATGTCGTAACAA | 59.016 | 37.500 | 0.00 | 0.00 | 39.91 | 2.83 |
6489 | 6829 | 2.037847 | AAGGGGCCCATGCTGAAC | 59.962 | 61.111 | 27.72 | 2.59 | 37.74 | 3.18 |
6588 | 6928 | 3.616956 | CATAACTGCAAGAGAGGGACA | 57.383 | 47.619 | 0.00 | 0.00 | 37.43 | 4.02 |
6589 | 6929 | 3.529533 | CATAACTGCAAGAGAGGGACAG | 58.470 | 50.000 | 0.00 | 0.00 | 37.43 | 3.51 |
6639 | 6996 | 3.480470 | ACTGAACAACCACTCCATCAAG | 58.520 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
6643 | 7000 | 4.102524 | TGAACAACCACTCCATCAAGTACT | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
6644 | 7001 | 4.706842 | ACAACCACTCCATCAAGTACTT | 57.293 | 40.909 | 1.12 | 1.12 | 0.00 | 2.24 |
6645 | 7002 | 5.048846 | ACAACCACTCCATCAAGTACTTT | 57.951 | 39.130 | 5.07 | 0.00 | 0.00 | 2.66 |
6646 | 7003 | 5.445964 | ACAACCACTCCATCAAGTACTTTT | 58.554 | 37.500 | 5.07 | 0.00 | 0.00 | 2.27 |
6647 | 7004 | 5.891551 | ACAACCACTCCATCAAGTACTTTTT | 59.108 | 36.000 | 5.07 | 0.00 | 0.00 | 1.94 |
6676 | 7033 | 6.380095 | ACATCAAGTACTATTCTCTCCGTC | 57.620 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
6678 | 7035 | 4.205587 | TCAAGTACTATTCTCTCCGTCCC | 58.794 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
6679 | 7036 | 3.947612 | AGTACTATTCTCTCCGTCCCA | 57.052 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
6685 | 7042 | 6.555463 | ACTATTCTCTCCGTCCCAAAATAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
6686 | 7043 | 6.583562 | ACTATTCTCTCCGTCCCAAAATAAG | 58.416 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
6687 | 7044 | 4.903045 | TTCTCTCCGTCCCAAAATAAGT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
6688 | 7045 | 4.903045 | TCTCTCCGTCCCAAAATAAGTT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
6690 | 7047 | 5.627135 | TCTCTCCGTCCCAAAATAAGTTTT | 58.373 | 37.500 | 0.00 | 0.00 | 38.03 | 2.43 |
6750 | 7173 | 4.654091 | ATCAATGCTTATTTTGGGACGG | 57.346 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
6762 | 7185 | 0.928505 | TGGGACGGAGGGAGTACATA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6842 | 7283 | 1.911766 | GGAGACGGGGACAAGTGGA | 60.912 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
6843 | 7284 | 1.292541 | GAGACGGGGACAAGTGGAC | 59.707 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
6845 | 7286 | 1.004918 | GACGGGGACAAGTGGACTG | 60.005 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
6847 | 7288 | 2.757077 | GGGGACAAGTGGACTGGG | 59.243 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
6941 | 7412 | 3.759581 | CCAGTCCCATATTAATGCAGCT | 58.240 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
6962 | 7434 | 7.597386 | CAGCTAGATGCAGATAACTACATACA | 58.403 | 38.462 | 0.00 | 0.00 | 45.94 | 2.29 |
6963 | 7435 | 8.249638 | CAGCTAGATGCAGATAACTACATACAT | 58.750 | 37.037 | 0.00 | 0.00 | 45.94 | 2.29 |
6964 | 7436 | 9.467796 | AGCTAGATGCAGATAACTACATACATA | 57.532 | 33.333 | 0.00 | 0.00 | 45.94 | 2.29 |
6969 | 7441 | 8.917415 | ATGCAGATAACTACATACATATGACG | 57.083 | 34.615 | 10.38 | 0.00 | 37.15 | 4.35 |
6970 | 7442 | 8.106247 | TGCAGATAACTACATACATATGACGA | 57.894 | 34.615 | 10.38 | 0.00 | 37.15 | 4.20 |
6971 | 7443 | 8.573035 | TGCAGATAACTACATACATATGACGAA | 58.427 | 33.333 | 10.38 | 0.00 | 37.15 | 3.85 |
6972 | 7444 | 9.406828 | GCAGATAACTACATACATATGACGAAA | 57.593 | 33.333 | 10.38 | 0.00 | 37.15 | 3.46 |
6977 | 7449 | 7.421530 | ACTACATACATATGACGAAAATGGC | 57.578 | 36.000 | 10.38 | 0.00 | 37.15 | 4.40 |
6978 | 7450 | 7.217200 | ACTACATACATATGACGAAAATGGCT | 58.783 | 34.615 | 10.38 | 0.00 | 37.15 | 4.75 |
6979 | 7451 | 6.545504 | ACATACATATGACGAAAATGGCTC | 57.454 | 37.500 | 10.38 | 0.00 | 37.15 | 4.70 |
6980 | 7452 | 6.054941 | ACATACATATGACGAAAATGGCTCA | 58.945 | 36.000 | 10.38 | 0.00 | 37.15 | 4.26 |
6981 | 7453 | 6.542005 | ACATACATATGACGAAAATGGCTCAA | 59.458 | 34.615 | 10.38 | 0.00 | 37.15 | 3.02 |
6982 | 7454 | 5.490139 | ACATATGACGAAAATGGCTCAAG | 57.510 | 39.130 | 10.38 | 0.00 | 0.00 | 3.02 |
6983 | 7455 | 4.943705 | ACATATGACGAAAATGGCTCAAGT | 59.056 | 37.500 | 10.38 | 0.00 | 0.00 | 3.16 |
6984 | 7456 | 5.065218 | ACATATGACGAAAATGGCTCAAGTC | 59.935 | 40.000 | 10.38 | 0.00 | 0.00 | 3.01 |
6985 | 7457 | 3.126001 | TGACGAAAATGGCTCAAGTCT | 57.874 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
6986 | 7458 | 2.807967 | TGACGAAAATGGCTCAAGTCTG | 59.192 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6987 | 7459 | 2.154462 | ACGAAAATGGCTCAAGTCTGG | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
6988 | 7460 | 2.154462 | CGAAAATGGCTCAAGTCTGGT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
6989 | 7461 | 2.554032 | CGAAAATGGCTCAAGTCTGGTT | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
6990 | 7462 | 3.610114 | CGAAAATGGCTCAAGTCTGGTTG | 60.610 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
6991 | 7463 | 1.915141 | AATGGCTCAAGTCTGGTTGG | 58.085 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
6992 | 7464 | 0.038744 | ATGGCTCAAGTCTGGTTGGG | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
6993 | 7465 | 1.352622 | TGGCTCAAGTCTGGTTGGGT | 61.353 | 55.000 | 0.00 | 0.00 | 29.81 | 4.51 |
6994 | 7466 | 0.890996 | GGCTCAAGTCTGGTTGGGTG | 60.891 | 60.000 | 0.00 | 0.00 | 29.81 | 4.61 |
6995 | 7467 | 0.179018 | GCTCAAGTCTGGTTGGGTGT | 60.179 | 55.000 | 0.00 | 0.00 | 29.81 | 4.16 |
6996 | 7468 | 1.597742 | CTCAAGTCTGGTTGGGTGTG | 58.402 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
6997 | 7469 | 0.916086 | TCAAGTCTGGTTGGGTGTGT | 59.084 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
6998 | 7470 | 1.024271 | CAAGTCTGGTTGGGTGTGTG | 58.976 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
6999 | 7471 | 0.751643 | AAGTCTGGTTGGGTGTGTGC | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
7000 | 7472 | 2.203139 | TCTGGTTGGGTGTGTGCG | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
7001 | 7473 | 3.286751 | CTGGTTGGGTGTGTGCGG | 61.287 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
7002 | 7474 | 3.765894 | CTGGTTGGGTGTGTGCGGA | 62.766 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
7003 | 7475 | 2.282180 | GGTTGGGTGTGTGCGGAT | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
7004 | 7476 | 1.003112 | GGTTGGGTGTGTGCGGATA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 2.59 |
7005 | 7477 | 0.393808 | GGTTGGGTGTGTGCGGATAT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 1.63 |
7006 | 7478 | 0.732571 | GTTGGGTGTGTGCGGATATG | 59.267 | 55.000 | 0.00 | 0.00 | 0.00 | 1.78 |
7007 | 7479 | 0.393673 | TTGGGTGTGTGCGGATATGG | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
7008 | 7480 | 1.223487 | GGGTGTGTGCGGATATGGT | 59.777 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
7009 | 7481 | 0.814010 | GGGTGTGTGCGGATATGGTC | 60.814 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7010 | 7482 | 0.178068 | GGTGTGTGCGGATATGGTCT | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7011 | 7483 | 1.406887 | GGTGTGTGCGGATATGGTCTT | 60.407 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
7012 | 7484 | 2.159014 | GGTGTGTGCGGATATGGTCTTA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
7013 | 7485 | 3.123804 | GTGTGTGCGGATATGGTCTTAG | 58.876 | 50.000 | 0.00 | 0.00 | 0.00 | 2.18 |
7014 | 7486 | 2.764010 | TGTGTGCGGATATGGTCTTAGT | 59.236 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
7015 | 7487 | 3.196901 | TGTGTGCGGATATGGTCTTAGTT | 59.803 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
7016 | 7488 | 4.189231 | GTGTGCGGATATGGTCTTAGTTT | 58.811 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
7017 | 7489 | 4.634443 | GTGTGCGGATATGGTCTTAGTTTT | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
7018 | 7490 | 5.813672 | GTGTGCGGATATGGTCTTAGTTTTA | 59.186 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
7019 | 7491 | 6.018994 | GTGTGCGGATATGGTCTTAGTTTTAG | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
7020 | 7492 | 6.047231 | GTGCGGATATGGTCTTAGTTTTAGT | 58.953 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7021 | 7493 | 6.537660 | GTGCGGATATGGTCTTAGTTTTAGTT | 59.462 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
7022 | 7494 | 6.759827 | TGCGGATATGGTCTTAGTTTTAGTTC | 59.240 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
7023 | 7495 | 6.074463 | GCGGATATGGTCTTAGTTTTAGTTCG | 60.074 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
7024 | 7496 | 6.976925 | CGGATATGGTCTTAGTTTTAGTTCGT | 59.023 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
7025 | 7497 | 8.131100 | CGGATATGGTCTTAGTTTTAGTTCGTA | 58.869 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
7026 | 7498 | 9.460906 | GGATATGGTCTTAGTTTTAGTTCGTAG | 57.539 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
7030 | 7502 | 8.621532 | TGGTCTTAGTTTTAGTTCGTAGTAGA | 57.378 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
7031 | 7503 | 9.236006 | TGGTCTTAGTTTTAGTTCGTAGTAGAT | 57.764 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
7032 | 7504 | 9.715123 | GGTCTTAGTTTTAGTTCGTAGTAGATC | 57.285 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
7037 | 7509 | 8.332996 | AGTTTTAGTTCGTAGTAGATCACTGA | 57.667 | 34.615 | 0.00 | 0.00 | 38.24 | 3.41 |
7038 | 7510 | 8.958506 | AGTTTTAGTTCGTAGTAGATCACTGAT | 58.041 | 33.333 | 0.00 | 0.00 | 38.24 | 2.90 |
7039 | 7511 | 9.224058 | GTTTTAGTTCGTAGTAGATCACTGATC | 57.776 | 37.037 | 10.65 | 10.65 | 38.24 | 2.92 |
7051 | 7523 | 5.375417 | GATCACTGATCTGATCTGATCGT | 57.625 | 43.478 | 27.54 | 24.60 | 44.12 | 3.73 |
7052 | 7524 | 5.771469 | GATCACTGATCTGATCTGATCGTT | 58.229 | 41.667 | 27.54 | 18.45 | 44.12 | 3.85 |
7053 | 7525 | 6.890979 | ATCACTGATCTGATCTGATCGTTA | 57.109 | 37.500 | 27.54 | 21.20 | 44.12 | 3.18 |
7054 | 7526 | 6.066054 | TCACTGATCTGATCTGATCGTTAC | 57.934 | 41.667 | 27.54 | 12.46 | 44.12 | 2.50 |
7055 | 7527 | 4.908730 | CACTGATCTGATCTGATCGTTACG | 59.091 | 45.833 | 27.54 | 18.52 | 44.12 | 3.18 |
7056 | 7528 | 4.023622 | ACTGATCTGATCTGATCGTTACGG | 60.024 | 45.833 | 27.54 | 16.86 | 44.12 | 4.02 |
7057 | 7529 | 3.253432 | TGATCTGATCTGATCGTTACGGG | 59.747 | 47.826 | 27.54 | 0.00 | 44.12 | 5.28 |
7058 | 7530 | 1.954382 | TCTGATCTGATCGTTACGGGG | 59.046 | 52.381 | 12.65 | 0.00 | 0.00 | 5.73 |
7059 | 7531 | 1.681793 | CTGATCTGATCGTTACGGGGT | 59.318 | 52.381 | 12.65 | 0.00 | 0.00 | 4.95 |
7060 | 7532 | 2.100916 | CTGATCTGATCGTTACGGGGTT | 59.899 | 50.000 | 12.65 | 0.00 | 0.00 | 4.11 |
7061 | 7533 | 2.498481 | TGATCTGATCGTTACGGGGTTT | 59.502 | 45.455 | 12.65 | 0.00 | 0.00 | 3.27 |
7062 | 7534 | 3.055675 | TGATCTGATCGTTACGGGGTTTT | 60.056 | 43.478 | 12.65 | 0.00 | 0.00 | 2.43 |
7063 | 7535 | 3.405823 | TCTGATCGTTACGGGGTTTTT | 57.594 | 42.857 | 4.53 | 0.00 | 0.00 | 1.94 |
7064 | 7536 | 3.328505 | TCTGATCGTTACGGGGTTTTTC | 58.671 | 45.455 | 4.53 | 0.00 | 0.00 | 2.29 |
7065 | 7537 | 3.007182 | TCTGATCGTTACGGGGTTTTTCT | 59.993 | 43.478 | 4.53 | 0.00 | 0.00 | 2.52 |
7066 | 7538 | 3.742385 | TGATCGTTACGGGGTTTTTCTT | 58.258 | 40.909 | 4.53 | 0.00 | 0.00 | 2.52 |
7067 | 7539 | 4.136051 | TGATCGTTACGGGGTTTTTCTTT | 58.864 | 39.130 | 4.53 | 0.00 | 0.00 | 2.52 |
7068 | 7540 | 4.579753 | TGATCGTTACGGGGTTTTTCTTTT | 59.420 | 37.500 | 4.53 | 0.00 | 0.00 | 2.27 |
7069 | 7541 | 4.979943 | TCGTTACGGGGTTTTTCTTTTT | 57.020 | 36.364 | 4.53 | 0.00 | 0.00 | 1.94 |
7070 | 7542 | 4.919206 | TCGTTACGGGGTTTTTCTTTTTC | 58.081 | 39.130 | 4.53 | 0.00 | 0.00 | 2.29 |
7071 | 7543 | 4.639755 | TCGTTACGGGGTTTTTCTTTTTCT | 59.360 | 37.500 | 4.53 | 0.00 | 0.00 | 2.52 |
7072 | 7544 | 5.125257 | TCGTTACGGGGTTTTTCTTTTTCTT | 59.875 | 36.000 | 4.53 | 0.00 | 0.00 | 2.52 |
7073 | 7545 | 5.806502 | CGTTACGGGGTTTTTCTTTTTCTTT | 59.193 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
7074 | 7546 | 6.310956 | CGTTACGGGGTTTTTCTTTTTCTTTT | 59.689 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
7075 | 7547 | 7.148606 | CGTTACGGGGTTTTTCTTTTTCTTTTT | 60.149 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
7076 | 7548 | 6.730960 | ACGGGGTTTTTCTTTTTCTTTTTC | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
7077 | 7549 | 5.644636 | ACGGGGTTTTTCTTTTTCTTTTTCC | 59.355 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
7078 | 7550 | 5.878116 | CGGGGTTTTTCTTTTTCTTTTTCCT | 59.122 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7079 | 7551 | 6.036735 | CGGGGTTTTTCTTTTTCTTTTTCCTC | 59.963 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
187 | 188 | 6.154534 | ACATACAAGTATGAGGTGTGCTAGAA | 59.845 | 38.462 | 23.02 | 0.00 | 44.22 | 2.10 |
196 | 197 | 8.534954 | TTAAGCTAGACATACAAGTATGAGGT | 57.465 | 34.615 | 23.02 | 14.09 | 44.22 | 3.85 |
197 | 198 | 9.250624 | GTTTAAGCTAGACATACAAGTATGAGG | 57.749 | 37.037 | 23.02 | 12.08 | 44.22 | 3.86 |
220 | 221 | 4.819630 | TCCGAATGAAGCACTGTTAAGTTT | 59.180 | 37.500 | 0.00 | 0.00 | 32.98 | 2.66 |
275 | 276 | 2.287009 | GCTCCGTGTCAACTTTCAAAGG | 60.287 | 50.000 | 1.31 | 0.00 | 0.00 | 3.11 |
332 | 333 | 5.411977 | TGGCAACATAATTTGAAGCAAATGG | 59.588 | 36.000 | 6.19 | 3.07 | 41.87 | 3.16 |
355 | 483 | 6.741992 | ACTACCATCACACACAACAATATG | 57.258 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
462 | 590 | 6.639632 | TGATAGAAAAGCATTAGATTGGCC | 57.360 | 37.500 | 0.00 | 0.00 | 0.00 | 5.36 |
630 | 758 | 6.862209 | ACTGTGAAGAAGCAAATTTACAACA | 58.138 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
663 | 793 | 7.542025 | AGCAAGTTCAGAAATAATTAAGCCAG | 58.458 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
742 | 872 | 2.224992 | TGCAAAAGTTGGAGGGCAGATA | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1156 | 1288 | 1.656818 | CGAAGAATGCGGGTGCCATT | 61.657 | 55.000 | 0.00 | 0.00 | 41.78 | 3.16 |
1223 | 1355 | 0.890683 | GGGAAGCAGGATGTGTTTGG | 59.109 | 55.000 | 0.00 | 0.00 | 39.31 | 3.28 |
1305 | 1437 | 5.633830 | TCTCATTTGCTTGGATCACTTTC | 57.366 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
1319 | 1451 | 2.486982 | CCTGCAGTGAGGTTCTCATTTG | 59.513 | 50.000 | 13.81 | 4.88 | 42.73 | 2.32 |
1352 | 1484 | 7.370383 | GGCATGAAGAAGTTGATACAAGAAAA | 58.630 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1514 | 1646 | 6.622245 | GCTGCGACAAGATAAATCATATGCAT | 60.622 | 38.462 | 3.79 | 3.79 | 0.00 | 3.96 |
1518 | 1650 | 8.663025 | CATTAGCTGCGACAAGATAAATCATAT | 58.337 | 33.333 | 0.00 | 0.00 | 32.23 | 1.78 |
1524 | 1656 | 7.786178 | AATACATTAGCTGCGACAAGATAAA | 57.214 | 32.000 | 0.00 | 0.00 | 32.23 | 1.40 |
1588 | 1721 | 6.543831 | AGTCACAGATCTTTAGTTTGCAGTTT | 59.456 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1884 | 2017 | 5.069501 | AGACCTACCTACGTCAATCAAAC | 57.930 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
2006 | 2139 | 4.339872 | TGCCTAAGGTTAGTTCAACGAA | 57.660 | 40.909 | 0.00 | 0.00 | 38.09 | 3.85 |
2007 | 2140 | 4.202284 | ACTTGCCTAAGGTTAGTTCAACGA | 60.202 | 41.667 | 0.00 | 0.00 | 38.09 | 3.85 |
2008 | 2141 | 4.062991 | ACTTGCCTAAGGTTAGTTCAACG | 58.937 | 43.478 | 0.00 | 0.00 | 38.09 | 4.10 |
2009 | 2142 | 6.206498 | CAAACTTGCCTAAGGTTAGTTCAAC | 58.794 | 40.000 | 0.00 | 0.00 | 41.80 | 3.18 |
2041 | 2178 | 5.900425 | ACAATGTCACACTTTGCACAATTA | 58.100 | 33.333 | 0.00 | 0.00 | 36.91 | 1.40 |
2073 | 2210 | 2.177016 | AGACTAAGGGGCTGTTTGGTTT | 59.823 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
2103 | 2240 | 6.206498 | TGTACTATTTGACTATAGTGCGCTG | 58.794 | 40.000 | 10.90 | 0.00 | 42.87 | 5.18 |
2160 | 2297 | 1.000827 | CAATAACAAGCAACACCGGCA | 60.001 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
2241 | 2378 | 0.250553 | ATGTGCCCGTTCGGAAAGAA | 60.251 | 50.000 | 13.08 | 0.00 | 36.31 | 2.52 |
2280 | 2417 | 3.494045 | CCTTCTCGGCATTTTTCTTCC | 57.506 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
2294 | 2431 | 2.233431 | AGTGTGAGACATCTGCCTTCTC | 59.767 | 50.000 | 0.00 | 0.00 | 36.99 | 2.87 |
2441 | 2580 | 4.332637 | GGCTGCACAACGCTGGTG | 62.333 | 66.667 | 0.50 | 0.00 | 43.06 | 4.17 |
2442 | 2581 | 4.569180 | AGGCTGCACAACGCTGGT | 62.569 | 61.111 | 0.50 | 0.00 | 43.06 | 4.00 |
2444 | 2583 | 3.730761 | GGAGGCTGCACAACGCTG | 61.731 | 66.667 | 0.00 | 0.00 | 43.06 | 5.18 |
2445 | 2584 | 2.184020 | TATGGAGGCTGCACAACGCT | 62.184 | 55.000 | 12.06 | 0.00 | 43.06 | 5.07 |
2446 | 2585 | 1.709147 | CTATGGAGGCTGCACAACGC | 61.709 | 60.000 | 12.06 | 0.00 | 42.89 | 4.84 |
2497 | 2708 | 1.487976 | TGGTCAGAGATCCAATGGAGC | 59.512 | 52.381 | 9.93 | 9.93 | 38.56 | 4.70 |
2578 | 2791 | 0.175302 | CACTTCTCGCTCCAGCATCT | 59.825 | 55.000 | 0.00 | 0.00 | 42.21 | 2.90 |
2579 | 2792 | 0.809241 | CCACTTCTCGCTCCAGCATC | 60.809 | 60.000 | 0.00 | 0.00 | 42.21 | 3.91 |
2597 | 2810 | 2.187163 | GGCACTCGGTCCTAAGCC | 59.813 | 66.667 | 0.00 | 0.00 | 34.71 | 4.35 |
2625 | 2838 | 0.319211 | TAACAGGGTGTGTCTTCGCG | 60.319 | 55.000 | 0.00 | 0.00 | 39.03 | 5.87 |
2632 | 2845 | 2.504367 | GCATCTGTTAACAGGGTGTGT | 58.496 | 47.619 | 30.35 | 10.95 | 43.91 | 3.72 |
2634 | 2847 | 1.346395 | TCGCATCTGTTAACAGGGTGT | 59.654 | 47.619 | 30.35 | 14.58 | 43.91 | 4.16 |
2665 | 2878 | 2.365635 | ATCGTGGGACCAGGAGGG | 60.366 | 66.667 | 17.45 | 0.00 | 42.82 | 4.30 |
2667 | 2880 | 2.903357 | CCATCGTGGGACCAGGAG | 59.097 | 66.667 | 17.45 | 10.34 | 42.82 | 3.69 |
2676 | 2889 | 0.386476 | CCAATCAATGCCCATCGTGG | 59.614 | 55.000 | 0.00 | 0.00 | 37.25 | 4.94 |
2680 | 2893 | 1.043022 | GACCCCAATCAATGCCCATC | 58.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2682 | 2895 | 1.379710 | CGACCCCAATCAATGCCCA | 60.380 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2726 | 2939 | 3.672293 | AACTGATGTTGGCGGCTG | 58.328 | 55.556 | 11.43 | 0.00 | 34.71 | 4.85 |
2763 | 2976 | 3.126686 | GCTCCTCTGAAATGCAAAGTCTC | 59.873 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
2982 | 3198 | 7.336396 | CCAATAGATCCATGATATCTCAAGCA | 58.664 | 38.462 | 12.24 | 0.00 | 35.36 | 3.91 |
3002 | 3218 | 1.375853 | GCATGCACTGACGGCCAATA | 61.376 | 55.000 | 14.21 | 0.00 | 0.00 | 1.90 |
3004 | 3220 | 3.364441 | GCATGCACTGACGGCCAA | 61.364 | 61.111 | 14.21 | 0.00 | 0.00 | 4.52 |
3007 | 3223 | 2.482374 | GAAGCATGCACTGACGGC | 59.518 | 61.111 | 21.98 | 0.00 | 0.00 | 5.68 |
3039 | 3255 | 5.620654 | GCAGTCAGCATGTGTGTTATCAATT | 60.621 | 40.000 | 0.00 | 0.00 | 44.79 | 2.32 |
3144 | 3360 | 1.800805 | CGAGCAAGGTCATGTTGAGT | 58.199 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3176 | 3392 | 0.956633 | TAGAAGGCACGTCGACAGTT | 59.043 | 50.000 | 17.16 | 0.41 | 42.91 | 3.16 |
3186 | 3402 | 6.267928 | TCACTCCCTATTAAGATAGAAGGCAC | 59.732 | 42.308 | 0.00 | 0.00 | 37.97 | 5.01 |
3194 | 3410 | 5.087923 | TGGGCTCACTCCCTATTAAGATA | 57.912 | 43.478 | 0.12 | 0.00 | 46.67 | 1.98 |
3270 | 3486 | 1.964223 | GCAGATACGAGGAAGATGGGA | 59.036 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
3339 | 3556 | 0.037590 | AAGGTGGCAATTGCTCCGTA | 59.962 | 50.000 | 28.42 | 8.75 | 41.70 | 4.02 |
3348 | 3565 | 1.074775 | TGAGGCGAAAGGTGGCAAT | 59.925 | 52.632 | 0.00 | 0.00 | 0.00 | 3.56 |
3368 | 3585 | 4.090498 | GCAATTTCTTTTGGCGAGTTCATC | 59.910 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3430 | 3647 | 0.694444 | ACTATGACGGCTGGGGGATT | 60.694 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3517 | 3734 | 8.336235 | TCTGATTAATGTGGGAATTTCTAACCT | 58.664 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
3541 | 3759 | 3.685139 | TGAAATGTCGCTTTCCTCTCT | 57.315 | 42.857 | 0.00 | 0.00 | 34.83 | 3.10 |
3652 | 3870 | 6.219302 | ACACTTGTTAGTACGTACAAATGC | 57.781 | 37.500 | 26.55 | 12.33 | 35.54 | 3.56 |
3660 | 3878 | 9.403110 | CATAACTCTTAACACTTGTTAGTACGT | 57.597 | 33.333 | 0.00 | 0.00 | 41.03 | 3.57 |
3661 | 3879 | 8.371053 | GCATAACTCTTAACACTTGTTAGTACG | 58.629 | 37.037 | 2.25 | 0.00 | 41.03 | 3.67 |
3662 | 3880 | 9.199982 | TGCATAACTCTTAACACTTGTTAGTAC | 57.800 | 33.333 | 2.25 | 0.00 | 41.03 | 2.73 |
3663 | 3881 | 9.419297 | CTGCATAACTCTTAACACTTGTTAGTA | 57.581 | 33.333 | 2.25 | 0.00 | 41.03 | 1.82 |
3704 | 3926 | 3.715495 | AGCGCATGTTCACATTTGAAAA | 58.285 | 36.364 | 11.47 | 0.00 | 43.52 | 2.29 |
3762 | 3984 | 5.475564 | GCATTTGGGTACTTTCTAAAGGTGA | 59.524 | 40.000 | 7.34 | 0.00 | 40.31 | 4.02 |
3778 | 4000 | 3.738830 | CCATAATCTGGTGCATTTGGG | 57.261 | 47.619 | 0.00 | 0.00 | 40.49 | 4.12 |
3788 | 4010 | 8.537466 | ACTACTTCAGTTTTCGCCATAATCTGG | 61.537 | 40.741 | 0.00 | 0.00 | 40.71 | 3.86 |
3790 | 4012 | 6.407202 | ACTACTTCAGTTTTCGCCATAATCT | 58.593 | 36.000 | 0.00 | 0.00 | 31.59 | 2.40 |
3821 | 4043 | 1.804748 | GGTGCCAACTGTACTGCTTAC | 59.195 | 52.381 | 0.00 | 0.00 | 0.00 | 2.34 |
3834 | 4056 | 5.878406 | TTAGAAAGGAAAATTGGTGCCAA | 57.122 | 34.783 | 6.08 | 6.08 | 40.47 | 4.52 |
3862 | 4084 | 7.306457 | GCAAGAAGAGAAGTTCAGCAAAATTTC | 60.306 | 37.037 | 5.50 | 0.00 | 32.83 | 2.17 |
3879 | 4101 | 2.540265 | AGTGTCCACTGCAAGAAGAG | 57.460 | 50.000 | 0.00 | 0.00 | 40.75 | 2.85 |
4156 | 4378 | 4.365514 | TGGTGATGTAGGAAATGTGTGT | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
4157 | 4379 | 4.943093 | TCATGGTGATGTAGGAAATGTGTG | 59.057 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
4158 | 4380 | 5.178096 | TCATGGTGATGTAGGAAATGTGT | 57.822 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
4159 | 4381 | 5.447683 | CGTTCATGGTGATGTAGGAAATGTG | 60.448 | 44.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4160 | 4382 | 4.635765 | CGTTCATGGTGATGTAGGAAATGT | 59.364 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
4161 | 4383 | 4.635765 | ACGTTCATGGTGATGTAGGAAATG | 59.364 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
4184 | 4406 | 6.423905 | GTGTACTGTACAGAGAAAATCAGCAA | 59.576 | 38.462 | 29.30 | 0.00 | 39.77 | 3.91 |
4288 | 4510 | 2.926200 | CAGATCTAGTTGGTGCTTGACG | 59.074 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4361 | 4583 | 6.706270 | CCACTAGTGAATGGGTGATAATGTAC | 59.294 | 42.308 | 24.68 | 0.00 | 31.83 | 2.90 |
4367 | 4589 | 4.358214 | TGTCCACTAGTGAATGGGTGATA | 58.642 | 43.478 | 24.68 | 6.43 | 36.56 | 2.15 |
4381 | 4603 | 7.201785 | GGAAAACAGTGAAATCTTTGTCCACTA | 60.202 | 37.037 | 0.00 | 0.00 | 36.44 | 2.74 |
4482 | 4718 | 7.871973 | ACATTGTATTGCATTTTACAGAAAGCA | 59.128 | 29.630 | 0.00 | 0.00 | 30.53 | 3.91 |
4532 | 4768 | 0.928229 | GAAGTCGTGCGTTTGTGAGT | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4577 | 4813 | 9.667107 | CTCAAACAGGTTATTATCTAGGAAACA | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
4647 | 4883 | 6.290294 | AGCCATGTTAAGAAATTCATTGCT | 57.710 | 33.333 | 0.00 | 0.00 | 35.49 | 3.91 |
4706 | 4954 | 6.499106 | TCCTCTTCATGCCAGTCAAATATA | 57.501 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
4881 | 5130 | 5.966636 | TGTACTCATCAATTTCGGAATCG | 57.033 | 39.130 | 0.00 | 0.00 | 37.82 | 3.34 |
4969 | 5218 | 2.238521 | GGTGAAGGCTCATGTTCCAAA | 58.761 | 47.619 | 8.32 | 0.00 | 33.05 | 3.28 |
5200 | 5452 | 1.341581 | ACTAGTCTGTCCTCCAGCTCC | 60.342 | 57.143 | 0.00 | 0.00 | 41.25 | 4.70 |
5293 | 5545 | 7.614908 | CATACAAAGCATACAATTTCATGTGC | 58.385 | 34.615 | 0.00 | 0.00 | 34.75 | 4.57 |
5351 | 5603 | 3.197333 | GGTTAGACCTCCTAAGTCCCAAC | 59.803 | 52.174 | 0.00 | 0.00 | 37.98 | 3.77 |
5640 | 5926 | 1.070758 | GTGCACAGACTCTTTCCCTGA | 59.929 | 52.381 | 13.17 | 0.00 | 0.00 | 3.86 |
5665 | 5951 | 6.096423 | TGTTACAGTCTTGATTATCGCTACCT | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
5671 | 5957 | 8.634475 | TCTCATTGTTACAGTCTTGATTATCG | 57.366 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
5806 | 6092 | 4.584638 | ACCATTCTGCAAGTAATACCCA | 57.415 | 40.909 | 0.00 | 0.00 | 33.76 | 4.51 |
5873 | 6159 | 1.623542 | ATTGGTGCCGGGAGTACCTC | 61.624 | 60.000 | 2.18 | 0.00 | 36.49 | 3.85 |
5896 | 6182 | 3.879892 | GGAGGAATTTAGGCAGTGTCATC | 59.120 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
5965 | 6251 | 1.992667 | CAGTTTCTCGCATAAGCACGA | 59.007 | 47.619 | 0.00 | 0.00 | 42.27 | 4.35 |
5970 | 6256 | 5.277058 | GCTATTGGTCAGTTTCTCGCATAAG | 60.277 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5981 | 6267 | 4.307032 | ACAGATTGGCTATTGGTCAGTT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
6010 | 6300 | 2.963371 | GAGACGCCGTTCTCCTGT | 59.037 | 61.111 | 0.00 | 0.00 | 36.74 | 4.00 |
6211 | 6521 | 6.015010 | TGTTTTCGGATAATCCAAATGGTTGT | 60.015 | 34.615 | 0.00 | 0.00 | 35.91 | 3.32 |
6315 | 6625 | 1.334243 | CTTCGGGTCTAGGCTCTTACG | 59.666 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
6323 | 6633 | 1.749634 | ACGATGTTCTTCGGGTCTAGG | 59.250 | 52.381 | 11.53 | 0.00 | 43.33 | 3.02 |
6330 | 6640 | 3.678072 | ACATTACACACGATGTTCTTCGG | 59.322 | 43.478 | 11.53 | 4.78 | 43.19 | 4.30 |
6348 | 6658 | 6.269315 | TGTCTGCAATTTTTGTTACGACATT | 58.731 | 32.000 | 0.00 | 0.00 | 35.29 | 2.71 |
6360 | 6700 | 6.339730 | TCACAAACTGAATGTCTGCAATTTT | 58.660 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
6453 | 6793 | 3.998672 | TTCGTCCGTCACTGGCCC | 61.999 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
6468 | 6808 | 2.037847 | AGCATGGGCCCCTTGTTC | 59.962 | 61.111 | 22.27 | 5.35 | 42.56 | 3.18 |
6489 | 6829 | 4.019174 | AGAAATGCTGTGGATTAACTGGG | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
6587 | 6927 | 1.673665 | GCTTGACTGACTGGGCCTG | 60.674 | 63.158 | 9.11 | 9.11 | 0.00 | 4.85 |
6588 | 6928 | 2.753029 | GCTTGACTGACTGGGCCT | 59.247 | 61.111 | 4.53 | 0.00 | 0.00 | 5.19 |
6589 | 6929 | 2.360475 | GGCTTGACTGACTGGGCC | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
6647 | 7004 | 9.436957 | GGAGAGAATAGTACTTGATGTTCAAAA | 57.563 | 33.333 | 0.00 | 0.00 | 35.73 | 2.44 |
6648 | 7005 | 7.759886 | CGGAGAGAATAGTACTTGATGTTCAAA | 59.240 | 37.037 | 0.00 | 0.00 | 35.73 | 2.69 |
6649 | 7006 | 7.093902 | ACGGAGAGAATAGTACTTGATGTTCAA | 60.094 | 37.037 | 0.00 | 0.00 | 34.79 | 2.69 |
6650 | 7007 | 6.377429 | ACGGAGAGAATAGTACTTGATGTTCA | 59.623 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
6651 | 7008 | 6.797454 | ACGGAGAGAATAGTACTTGATGTTC | 58.203 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6652 | 7009 | 6.183360 | GGACGGAGAGAATAGTACTTGATGTT | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.71 |
6653 | 7010 | 5.299782 | GGACGGAGAGAATAGTACTTGATGT | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6654 | 7011 | 5.278561 | GGGACGGAGAGAATAGTACTTGATG | 60.279 | 48.000 | 0.00 | 0.00 | 0.00 | 3.07 |
6655 | 7012 | 4.828387 | GGGACGGAGAGAATAGTACTTGAT | 59.172 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
6656 | 7013 | 4.205587 | GGGACGGAGAGAATAGTACTTGA | 58.794 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
6657 | 7014 | 3.952323 | TGGGACGGAGAGAATAGTACTTG | 59.048 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
6658 | 7015 | 4.246712 | TGGGACGGAGAGAATAGTACTT | 57.753 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
6659 | 7016 | 3.947612 | TGGGACGGAGAGAATAGTACT | 57.052 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
6660 | 7017 | 4.996788 | TTTGGGACGGAGAGAATAGTAC | 57.003 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
6666 | 7023 | 4.903045 | ACTTATTTTGGGACGGAGAGAA | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
6723 | 7080 | 8.402472 | CGTCCCAAAATAAGCATTGATTTAGTA | 58.598 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6725 | 7082 | 6.697019 | CCGTCCCAAAATAAGCATTGATTTAG | 59.303 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
6726 | 7083 | 6.378564 | TCCGTCCCAAAATAAGCATTGATTTA | 59.621 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
6730 | 7087 | 3.691575 | TCCGTCCCAAAATAAGCATTGA | 58.308 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
6732 | 7089 | 3.023832 | CCTCCGTCCCAAAATAAGCATT | 58.976 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
6734 | 7091 | 1.340600 | CCCTCCGTCCCAAAATAAGCA | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
6735 | 7092 | 1.064979 | TCCCTCCGTCCCAAAATAAGC | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
6737 | 7094 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
6743 | 7166 | 0.928505 | TATGTACTCCCTCCGTCCCA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
6745 | 7168 | 2.361438 | CTGTTATGTACTCCCTCCGTCC | 59.639 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
6746 | 7169 | 3.285484 | TCTGTTATGTACTCCCTCCGTC | 58.715 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6747 | 7170 | 3.377253 | TCTGTTATGTACTCCCTCCGT | 57.623 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
6750 | 7173 | 5.294552 | GCATGTTTCTGTTATGTACTCCCTC | 59.705 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6847 | 7288 | 4.980805 | TCACCCTTGTGGCGACGC | 62.981 | 66.667 | 12.43 | 12.43 | 42.98 | 5.19 |
6893 | 7364 | 2.150014 | TAAGTTGCCCTGCCTTCCCC | 62.150 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
6954 | 7426 | 7.384932 | TGAGCCATTTTCGTCATATGTATGTAG | 59.615 | 37.037 | 1.90 | 0.00 | 35.26 | 2.74 |
6956 | 7428 | 6.054941 | TGAGCCATTTTCGTCATATGTATGT | 58.945 | 36.000 | 1.90 | 0.00 | 35.26 | 2.29 |
6962 | 7434 | 5.295292 | CAGACTTGAGCCATTTTCGTCATAT | 59.705 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
6963 | 7435 | 4.631377 | CAGACTTGAGCCATTTTCGTCATA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
6964 | 7436 | 3.438087 | CAGACTTGAGCCATTTTCGTCAT | 59.562 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
6965 | 7437 | 2.807967 | CAGACTTGAGCCATTTTCGTCA | 59.192 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
6966 | 7438 | 2.160417 | CCAGACTTGAGCCATTTTCGTC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
6967 | 7439 | 2.154462 | CCAGACTTGAGCCATTTTCGT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
6968 | 7440 | 2.154462 | ACCAGACTTGAGCCATTTTCG | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
6969 | 7441 | 3.305608 | CCAACCAGACTTGAGCCATTTTC | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
6970 | 7442 | 2.629617 | CCAACCAGACTTGAGCCATTTT | 59.370 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
6971 | 7443 | 2.242043 | CCAACCAGACTTGAGCCATTT | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
6972 | 7444 | 1.548582 | CCCAACCAGACTTGAGCCATT | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
6973 | 7445 | 0.038744 | CCCAACCAGACTTGAGCCAT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
6974 | 7446 | 1.352622 | ACCCAACCAGACTTGAGCCA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
6975 | 7447 | 0.890996 | CACCCAACCAGACTTGAGCC | 60.891 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
6976 | 7448 | 0.179018 | ACACCCAACCAGACTTGAGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
6977 | 7449 | 1.134098 | ACACACCCAACCAGACTTGAG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
6978 | 7450 | 0.916086 | ACACACCCAACCAGACTTGA | 59.084 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
6979 | 7451 | 1.024271 | CACACACCCAACCAGACTTG | 58.976 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6980 | 7452 | 0.751643 | GCACACACCCAACCAGACTT | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6981 | 7453 | 1.152963 | GCACACACCCAACCAGACT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
6982 | 7454 | 2.542907 | CGCACACACCCAACCAGAC | 61.543 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
6983 | 7455 | 2.203139 | CGCACACACCCAACCAGA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
6984 | 7456 | 3.286751 | CCGCACACACCCAACCAG | 61.287 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
6985 | 7457 | 1.769716 | TATCCGCACACACCCAACCA | 61.770 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
6986 | 7458 | 0.393808 | ATATCCGCACACACCCAACC | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
6987 | 7459 | 0.732571 | CATATCCGCACACACCCAAC | 59.267 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
6988 | 7460 | 0.393673 | CCATATCCGCACACACCCAA | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
6989 | 7461 | 1.223211 | CCATATCCGCACACACCCA | 59.777 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
6990 | 7462 | 0.814010 | GACCATATCCGCACACACCC | 60.814 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
6991 | 7463 | 0.178068 | AGACCATATCCGCACACACC | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
6992 | 7464 | 2.024176 | AAGACCATATCCGCACACAC | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
6993 | 7465 | 2.764010 | ACTAAGACCATATCCGCACACA | 59.236 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
6994 | 7466 | 3.454371 | ACTAAGACCATATCCGCACAC | 57.546 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
6995 | 7467 | 4.481368 | AAACTAAGACCATATCCGCACA | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
6996 | 7468 | 6.047231 | ACTAAAACTAAGACCATATCCGCAC | 58.953 | 40.000 | 0.00 | 0.00 | 0.00 | 5.34 |
6997 | 7469 | 6.229936 | ACTAAAACTAAGACCATATCCGCA | 57.770 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
6998 | 7470 | 6.074463 | CGAACTAAAACTAAGACCATATCCGC | 60.074 | 42.308 | 0.00 | 0.00 | 0.00 | 5.54 |
6999 | 7471 | 6.976925 | ACGAACTAAAACTAAGACCATATCCG | 59.023 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
7000 | 7472 | 9.460906 | CTACGAACTAAAACTAAGACCATATCC | 57.539 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
7004 | 7476 | 9.236006 | TCTACTACGAACTAAAACTAAGACCAT | 57.764 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
7005 | 7477 | 8.621532 | TCTACTACGAACTAAAACTAAGACCA | 57.378 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
7006 | 7478 | 9.715123 | GATCTACTACGAACTAAAACTAAGACC | 57.285 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
7011 | 7483 | 9.440773 | TCAGTGATCTACTACGAACTAAAACTA | 57.559 | 33.333 | 0.00 | 0.00 | 37.60 | 2.24 |
7012 | 7484 | 8.332996 | TCAGTGATCTACTACGAACTAAAACT | 57.667 | 34.615 | 0.00 | 0.00 | 37.60 | 2.66 |
7013 | 7485 | 9.224058 | GATCAGTGATCTACTACGAACTAAAAC | 57.776 | 37.037 | 23.33 | 0.00 | 37.60 | 2.43 |
7014 | 7486 | 9.175312 | AGATCAGTGATCTACTACGAACTAAAA | 57.825 | 33.333 | 30.16 | 0.00 | 46.15 | 1.52 |
7015 | 7487 | 8.613482 | CAGATCAGTGATCTACTACGAACTAAA | 58.387 | 37.037 | 30.54 | 0.00 | 46.25 | 1.85 |
7016 | 7488 | 7.985752 | TCAGATCAGTGATCTACTACGAACTAA | 59.014 | 37.037 | 30.54 | 4.03 | 46.25 | 2.24 |
7017 | 7489 | 7.498443 | TCAGATCAGTGATCTACTACGAACTA | 58.502 | 38.462 | 30.54 | 4.35 | 46.25 | 2.24 |
7018 | 7490 | 6.350103 | TCAGATCAGTGATCTACTACGAACT | 58.650 | 40.000 | 30.54 | 6.82 | 46.25 | 3.01 |
7019 | 7491 | 6.606234 | TCAGATCAGTGATCTACTACGAAC | 57.394 | 41.667 | 30.54 | 4.37 | 46.25 | 3.95 |
7020 | 7492 | 7.428282 | GATCAGATCAGTGATCTACTACGAA | 57.572 | 40.000 | 30.54 | 13.35 | 46.25 | 3.85 |
7030 | 7502 | 5.787953 | AACGATCAGATCAGATCAGTGAT | 57.212 | 39.130 | 23.21 | 12.94 | 43.61 | 3.06 |
7031 | 7503 | 5.277538 | CGTAACGATCAGATCAGATCAGTGA | 60.278 | 44.000 | 23.21 | 14.19 | 43.61 | 3.41 |
7032 | 7504 | 4.908730 | CGTAACGATCAGATCAGATCAGTG | 59.091 | 45.833 | 23.21 | 12.44 | 43.61 | 3.66 |
7033 | 7505 | 4.023622 | CCGTAACGATCAGATCAGATCAGT | 60.024 | 45.833 | 23.21 | 18.72 | 43.61 | 3.41 |
7034 | 7506 | 4.471373 | CCGTAACGATCAGATCAGATCAG | 58.529 | 47.826 | 23.21 | 18.22 | 43.61 | 2.90 |
7035 | 7507 | 3.253432 | CCCGTAACGATCAGATCAGATCA | 59.747 | 47.826 | 23.21 | 5.87 | 43.61 | 2.92 |
7036 | 7508 | 3.366476 | CCCCGTAACGATCAGATCAGATC | 60.366 | 52.174 | 16.10 | 16.10 | 40.76 | 2.75 |
7037 | 7509 | 2.558795 | CCCCGTAACGATCAGATCAGAT | 59.441 | 50.000 | 11.12 | 0.00 | 0.00 | 2.90 |
7038 | 7510 | 1.954382 | CCCCGTAACGATCAGATCAGA | 59.046 | 52.381 | 11.12 | 0.00 | 0.00 | 3.27 |
7039 | 7511 | 1.681793 | ACCCCGTAACGATCAGATCAG | 59.318 | 52.381 | 11.12 | 6.05 | 0.00 | 2.90 |
7040 | 7512 | 1.771565 | ACCCCGTAACGATCAGATCA | 58.228 | 50.000 | 11.12 | 0.00 | 0.00 | 2.92 |
7041 | 7513 | 2.884894 | AACCCCGTAACGATCAGATC | 57.115 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
7042 | 7514 | 3.622166 | AAAACCCCGTAACGATCAGAT | 57.378 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
7043 | 7515 | 3.007182 | AGAAAAACCCCGTAACGATCAGA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
7044 | 7516 | 3.332034 | AGAAAAACCCCGTAACGATCAG | 58.668 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
7045 | 7517 | 3.405823 | AGAAAAACCCCGTAACGATCA | 57.594 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
7046 | 7518 | 4.754372 | AAAGAAAAACCCCGTAACGATC | 57.246 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
7047 | 7519 | 5.300034 | AGAAAAAGAAAAACCCCGTAACGAT | 59.700 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
7048 | 7520 | 4.639755 | AGAAAAAGAAAAACCCCGTAACGA | 59.360 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
7049 | 7521 | 4.923893 | AGAAAAAGAAAAACCCCGTAACG | 58.076 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
7050 | 7522 | 7.599630 | AAAAGAAAAAGAAAAACCCCGTAAC | 57.400 | 32.000 | 0.00 | 0.00 | 0.00 | 2.50 |
7051 | 7523 | 7.333921 | GGAAAAAGAAAAAGAAAAACCCCGTAA | 59.666 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
7052 | 7524 | 6.817641 | GGAAAAAGAAAAAGAAAAACCCCGTA | 59.182 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
7053 | 7525 | 5.644636 | GGAAAAAGAAAAAGAAAAACCCCGT | 59.355 | 36.000 | 0.00 | 0.00 | 0.00 | 5.28 |
7054 | 7526 | 5.878116 | AGGAAAAAGAAAAAGAAAAACCCCG | 59.122 | 36.000 | 0.00 | 0.00 | 0.00 | 5.73 |
7055 | 7527 | 7.316544 | GAGGAAAAAGAAAAAGAAAAACCCC | 57.683 | 36.000 | 0.00 | 0.00 | 0.00 | 4.95 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.