Multiple sequence alignment - TraesCS6A01G099500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G099500 chr6A 100.000 2516 0 0 1 2516 67122733 67120218 0.000000e+00 4647
1 TraesCS6A01G099500 chr4A 96.647 1193 35 4 1326 2516 162153516 162154705 0.000000e+00 1977
2 TraesCS6A01G099500 chr4A 91.908 1174 66 16 766 1919 162148213 162149377 0.000000e+00 1615
3 TraesCS6A01G099500 chr4A 90.066 1218 94 8 1300 2516 563029317 563030508 0.000000e+00 1554
4 TraesCS6A01G099500 chr4A 84.296 1229 170 16 1300 2513 734081139 734082359 0.000000e+00 1179
5 TraesCS6A01G099500 chr4A 96.970 594 17 1 1326 1919 162136663 162137255 0.000000e+00 996
6 TraesCS6A01G099500 chr4A 96.807 595 17 2 1326 1919 162132782 162133375 0.000000e+00 992
7 TraesCS6A01G099500 chr4A 96.639 595 18 2 1326 1919 162140561 162141154 0.000000e+00 987
8 TraesCS6A01G099500 chr4A 95.028 543 17 2 766 1299 162136066 162136607 0.000000e+00 845
9 TraesCS6A01G099500 chr4A 95.028 543 17 2 766 1299 162139964 162140505 0.000000e+00 845
10 TraesCS6A01G099500 chr4A 94.843 543 18 2 766 1299 162132185 162132726 0.000000e+00 839
11 TraesCS6A01G099500 chr4A 94.944 534 17 2 775 1299 162152928 162153460 0.000000e+00 828
12 TraesCS6A01G099500 chr4A 94.877 527 17 2 766 1283 162143863 162144388 0.000000e+00 815
13 TraesCS6A01G099500 chr4A 94.142 478 18 2 766 1234 162152089 162152565 0.000000e+00 719
14 TraesCS6A01G099500 chr3D 94.132 1227 59 4 1300 2516 568576729 568575506 0.000000e+00 1855
15 TraesCS6A01G099500 chr3D 80.473 169 24 4 20 180 135047591 135047758 1.220000e-23 121
16 TraesCS6A01G099500 chr3B 92.705 1220 84 4 1300 2516 542648569 542649786 0.000000e+00 1755
17 TraesCS6A01G099500 chr3B 93.154 1154 75 4 1300 2451 580067385 580068536 0.000000e+00 1690
18 TraesCS6A01G099500 chr3B 91.544 544 32 8 766 1299 580066806 580067345 0.000000e+00 737
19 TraesCS6A01G099500 chr3B 90.976 543 34 6 766 1299 542647993 542648529 0.000000e+00 717
20 TraesCS6A01G099500 chr3B 92.105 304 22 2 253 555 449806546 449806848 6.430000e-116 427
21 TraesCS6A01G099500 chr3A 90.969 1218 82 9 1300 2516 198524381 198525571 0.000000e+00 1615
22 TraesCS6A01G099500 chr5A 90.640 1218 88 8 1300 2516 317508609 317509801 0.000000e+00 1594
23 TraesCS6A01G099500 chr5A 92.131 305 22 2 252 555 64980814 64980511 1.790000e-116 429
24 TraesCS6A01G099500 chr5A 81.622 185 24 9 19 196 6481441 6481622 7.250000e-31 145
25 TraesCS6A01G099500 chr5A 76.526 213 33 15 43 243 616507615 616507408 1.590000e-17 100
26 TraesCS6A01G099500 chr6B 92.045 880 68 1 1300 2179 63448445 63447568 0.000000e+00 1236
27 TraesCS6A01G099500 chr6B 90.809 544 36 5 766 1299 63449024 63448485 0.000000e+00 715
28 TraesCS6A01G099500 chr6B 92.787 305 18 4 252 554 675395932 675396234 2.970000e-119 438
29 TraesCS6A01G099500 chrUn 96.477 596 18 2 1326 1919 347528576 347529170 0.000000e+00 981
30 TraesCS6A01G099500 chrUn 94.944 534 17 2 775 1299 347527988 347528520 0.000000e+00 828
31 TraesCS6A01G099500 chr2D 83.501 897 130 11 1633 2516 470560479 470559588 0.000000e+00 821
32 TraesCS6A01G099500 chr2D 91.262 309 24 3 249 556 459856758 459857064 3.870000e-113 418
33 TraesCS6A01G099500 chr2D 83.077 130 15 4 20 143 614742621 614742749 7.360000e-21 111
34 TraesCS6A01G099500 chr4B 91.344 543 33 5 766 1299 656986402 656986939 0.000000e+00 730
35 TraesCS6A01G099500 chr1B 92.079 303 22 2 254 555 683991873 683992174 2.310000e-115 425
36 TraesCS6A01G099500 chr1B 91.026 312 27 1 250 561 484457858 484457548 1.080000e-113 420
37 TraesCS6A01G099500 chr7D 90.675 311 27 2 251 560 141345335 141345644 1.800000e-111 412
38 TraesCS6A01G099500 chr5D 90.675 311 27 2 250 560 521864292 521863984 1.800000e-111 412
39 TraesCS6A01G099500 chr4D 89.809 314 28 4 249 560 208562626 208562315 1.400000e-107 399
40 TraesCS6A01G099500 chr2A 81.250 160 22 7 26 180 662895397 662895241 3.400000e-24 122
41 TraesCS6A01G099500 chr2A 82.759 116 14 6 1 111 632602888 632602774 5.730000e-17 99
42 TraesCS6A01G099500 chr5B 81.699 153 16 8 5 150 507692100 507692247 1.580000e-22 117
43 TraesCS6A01G099500 chr6D 83.761 117 12 7 1 111 284603103 284603218 1.230000e-18 104
44 TraesCS6A01G099500 chr2B 82.759 116 16 4 1 112 572551912 572551797 1.590000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G099500 chr6A 67120218 67122733 2515 True 4647.000000 4647 100.000000 1 2516 1 chr6A.!!$R1 2515
1 TraesCS6A01G099500 chr4A 563029317 563030508 1191 False 1554.000000 1554 90.066000 1300 2516 1 chr4A.!!$F1 1216
2 TraesCS6A01G099500 chr4A 734081139 734082359 1220 False 1179.000000 1179 84.296000 1300 2513 1 chr4A.!!$F2 1213
3 TraesCS6A01G099500 chr4A 162132185 162154705 22520 False 1041.636364 1977 95.257545 766 2516 11 chr4A.!!$F3 1750
4 TraesCS6A01G099500 chr3D 568575506 568576729 1223 True 1855.000000 1855 94.132000 1300 2516 1 chr3D.!!$R1 1216
5 TraesCS6A01G099500 chr3B 542647993 542649786 1793 False 1236.000000 1755 91.840500 766 2516 2 chr3B.!!$F2 1750
6 TraesCS6A01G099500 chr3B 580066806 580068536 1730 False 1213.500000 1690 92.349000 766 2451 2 chr3B.!!$F3 1685
7 TraesCS6A01G099500 chr3A 198524381 198525571 1190 False 1615.000000 1615 90.969000 1300 2516 1 chr3A.!!$F1 1216
8 TraesCS6A01G099500 chr5A 317508609 317509801 1192 False 1594.000000 1594 90.640000 1300 2516 1 chr5A.!!$F2 1216
9 TraesCS6A01G099500 chr6B 63447568 63449024 1456 True 975.500000 1236 91.427000 766 2179 2 chr6B.!!$R1 1413
10 TraesCS6A01G099500 chrUn 347527988 347529170 1182 False 904.500000 981 95.710500 775 1919 2 chrUn.!!$F1 1144
11 TraesCS6A01G099500 chr2D 470559588 470560479 891 True 821.000000 821 83.501000 1633 2516 1 chr2D.!!$R1 883
12 TraesCS6A01G099500 chr4B 656986402 656986939 537 False 730.000000 730 91.344000 766 1299 1 chr4B.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 0.030638 GGGTGTGTGTGTGTGCATTC 59.969 55.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 22889 0.671781 CTCCACGGAAGTTCCAGCAG 60.672 60.0 21.76 7.78 46.4 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.684448 TTTTTCTATACGCATTTGACATTTTCA 57.316 25.926 0.00 0.00 0.00 2.69
68 69 9.684448 TTTTCTATACGCATTTGACATTTTCAA 57.316 25.926 0.00 0.00 42.83 2.69
241 242 9.941325 TGATTGGTTAGCATTTTCATAATGTTT 57.059 25.926 0.00 0.00 0.00 2.83
257 258 9.509855 TCATAATGTTTTACATAAATGCGAACC 57.490 29.630 0.00 0.00 37.97 3.62
258 259 9.295214 CATAATGTTTTACATAAATGCGAACCA 57.705 29.630 0.00 0.00 37.97 3.67
259 260 9.862371 ATAATGTTTTACATAAATGCGAACCAA 57.138 25.926 0.00 0.00 37.97 3.67
260 261 8.770438 AATGTTTTACATAAATGCGAACCAAT 57.230 26.923 0.00 0.00 37.97 3.16
261 262 7.573916 TGTTTTACATAAATGCGAACCAATG 57.426 32.000 0.00 0.00 0.00 2.82
262 263 7.148641 TGTTTTACATAAATGCGAACCAATGT 58.851 30.769 0.00 0.00 0.00 2.71
263 264 7.115520 TGTTTTACATAAATGCGAACCAATGTG 59.884 33.333 0.00 0.00 0.00 3.21
264 265 4.782019 ACATAAATGCGAACCAATGTGT 57.218 36.364 0.00 0.00 0.00 3.72
265 266 4.484236 ACATAAATGCGAACCAATGTGTG 58.516 39.130 0.00 0.00 0.00 3.82
278 279 4.439305 CAATGTGTGGTTGGATGGTTAG 57.561 45.455 0.00 0.00 0.00 2.34
279 280 4.078537 CAATGTGTGGTTGGATGGTTAGA 58.921 43.478 0.00 0.00 0.00 2.10
280 281 3.417069 TGTGTGGTTGGATGGTTAGAG 57.583 47.619 0.00 0.00 0.00 2.43
281 282 2.039746 TGTGTGGTTGGATGGTTAGAGG 59.960 50.000 0.00 0.00 0.00 3.69
282 283 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
283 284 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
284 285 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
286 287 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
287 288 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
288 289 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
289 290 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
290 291 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
291 292 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
292 293 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
293 294 3.798515 TGGTTAGAGGGACTGTGGTATT 58.201 45.455 0.00 0.00 41.55 1.89
294 295 3.773119 TGGTTAGAGGGACTGTGGTATTC 59.227 47.826 0.00 0.00 41.55 1.75
295 296 3.134262 GGTTAGAGGGACTGTGGTATTCC 59.866 52.174 0.00 0.00 41.55 3.01
296 297 1.880941 AGAGGGACTGTGGTATTCCC 58.119 55.000 0.00 0.00 46.22 3.97
299 300 0.107165 GGGACTGTGGTATTCCCAGC 60.107 60.000 0.76 1.96 46.45 4.85
300 301 0.107165 GGACTGTGGTATTCCCAGCC 60.107 60.000 6.73 5.99 46.45 4.85
301 302 0.107165 GACTGTGGTATTCCCAGCCC 60.107 60.000 6.73 0.00 46.45 5.19
302 303 0.844661 ACTGTGGTATTCCCAGCCCA 60.845 55.000 6.73 0.00 46.45 5.36
303 304 0.552848 CTGTGGTATTCCCAGCCCAT 59.447 55.000 0.00 0.00 46.45 4.00
304 305 0.550914 TGTGGTATTCCCAGCCCATC 59.449 55.000 0.00 0.00 46.45 3.51
305 306 0.550914 GTGGTATTCCCAGCCCATCA 59.449 55.000 0.00 0.00 46.45 3.07
306 307 0.846015 TGGTATTCCCAGCCCATCAG 59.154 55.000 0.00 0.00 38.72 2.90
307 308 0.111253 GGTATTCCCAGCCCATCAGG 59.889 60.000 0.00 0.00 39.47 3.86
321 322 4.510167 CCATCAGGGTTCAAATCCTAGT 57.490 45.455 0.00 0.00 37.45 2.57
322 323 4.202441 CCATCAGGGTTCAAATCCTAGTG 58.798 47.826 0.00 0.00 37.45 2.74
323 324 3.350219 TCAGGGTTCAAATCCTAGTGC 57.650 47.619 0.00 0.00 37.45 4.40
324 325 2.912956 TCAGGGTTCAAATCCTAGTGCT 59.087 45.455 0.00 0.00 37.45 4.40
325 326 3.055094 TCAGGGTTCAAATCCTAGTGCTC 60.055 47.826 0.00 0.00 37.45 4.26
326 327 2.093447 AGGGTTCAAATCCTAGTGCTCG 60.093 50.000 0.00 0.00 37.89 5.03
327 328 1.666189 GGTTCAAATCCTAGTGCTCGC 59.334 52.381 0.00 0.00 0.00 5.03
328 329 2.346803 GTTCAAATCCTAGTGCTCGCA 58.653 47.619 0.00 0.00 0.00 5.10
329 330 2.939103 GTTCAAATCCTAGTGCTCGCAT 59.061 45.455 0.00 0.00 0.00 4.73
330 331 3.266510 TCAAATCCTAGTGCTCGCATT 57.733 42.857 0.00 0.00 0.00 3.56
331 332 3.609853 TCAAATCCTAGTGCTCGCATTT 58.390 40.909 0.00 0.00 0.00 2.32
332 333 4.765273 TCAAATCCTAGTGCTCGCATTTA 58.235 39.130 0.00 0.00 0.00 1.40
333 334 5.368145 TCAAATCCTAGTGCTCGCATTTAT 58.632 37.500 0.00 0.00 0.00 1.40
334 335 5.822519 TCAAATCCTAGTGCTCGCATTTATT 59.177 36.000 0.00 0.00 0.00 1.40
335 336 6.318648 TCAAATCCTAGTGCTCGCATTTATTT 59.681 34.615 0.00 0.00 0.00 1.40
336 337 6.699575 AATCCTAGTGCTCGCATTTATTTT 57.300 33.333 0.00 0.00 0.00 1.82
337 338 6.699575 ATCCTAGTGCTCGCATTTATTTTT 57.300 33.333 0.00 0.00 0.00 1.94
338 339 5.879237 TCCTAGTGCTCGCATTTATTTTTG 58.121 37.500 0.00 0.00 0.00 2.44
339 340 5.036737 CCTAGTGCTCGCATTTATTTTTGG 58.963 41.667 0.00 0.00 0.00 3.28
340 341 4.782019 AGTGCTCGCATTTATTTTTGGA 57.218 36.364 0.00 0.00 0.00 3.53
341 342 5.329035 AGTGCTCGCATTTATTTTTGGAT 57.671 34.783 0.00 0.00 0.00 3.41
342 343 5.723295 AGTGCTCGCATTTATTTTTGGATT 58.277 33.333 0.00 0.00 0.00 3.01
343 344 6.165577 AGTGCTCGCATTTATTTTTGGATTT 58.834 32.000 0.00 0.00 0.00 2.17
344 345 7.319646 AGTGCTCGCATTTATTTTTGGATTTA 58.680 30.769 0.00 0.00 0.00 1.40
345 346 7.981225 AGTGCTCGCATTTATTTTTGGATTTAT 59.019 29.630 0.00 0.00 0.00 1.40
346 347 8.603181 GTGCTCGCATTTATTTTTGGATTTATT 58.397 29.630 0.00 0.00 0.00 1.40
347 348 9.160496 TGCTCGCATTTATTTTTGGATTTATTT 57.840 25.926 0.00 0.00 0.00 1.40
348 349 9.986833 GCTCGCATTTATTTTTGGATTTATTTT 57.013 25.926 0.00 0.00 0.00 1.82
359 360 7.913674 TTTGGATTTATTTTTGGATTTCCGG 57.086 32.000 0.00 0.00 39.43 5.14
360 361 5.423886 TGGATTTATTTTTGGATTTCCGGC 58.576 37.500 0.00 0.00 39.43 6.13
361 362 4.506288 GGATTTATTTTTGGATTTCCGGCG 59.494 41.667 0.00 0.00 39.43 6.46
362 363 4.785511 TTTATTTTTGGATTTCCGGCGA 57.214 36.364 9.30 0.00 39.43 5.54
363 364 4.993029 TTATTTTTGGATTTCCGGCGAT 57.007 36.364 9.30 0.00 39.43 4.58
364 365 2.645730 TTTTTGGATTTCCGGCGATG 57.354 45.000 9.30 0.00 39.43 3.84
365 366 0.172352 TTTTGGATTTCCGGCGATGC 59.828 50.000 9.30 0.00 39.43 3.91
366 367 1.987704 TTTGGATTTCCGGCGATGCG 61.988 55.000 9.30 0.00 39.43 4.73
367 368 2.895372 GGATTTCCGGCGATGCGT 60.895 61.111 9.30 0.00 0.00 5.24
368 369 1.593209 GGATTTCCGGCGATGCGTA 60.593 57.895 9.30 0.00 0.00 4.42
369 370 0.949105 GGATTTCCGGCGATGCGTAT 60.949 55.000 9.30 0.00 0.00 3.06
370 371 0.865769 GATTTCCGGCGATGCGTATT 59.134 50.000 9.30 0.00 0.00 1.89
371 372 0.865769 ATTTCCGGCGATGCGTATTC 59.134 50.000 9.30 0.00 0.00 1.75
372 373 0.460459 TTTCCGGCGATGCGTATTCA 60.460 50.000 9.30 0.00 0.00 2.57
373 374 0.874175 TTCCGGCGATGCGTATTCAG 60.874 55.000 9.30 0.00 0.00 3.02
374 375 1.591594 CCGGCGATGCGTATTCAGT 60.592 57.895 9.30 0.00 0.00 3.41
375 376 1.559814 CGGCGATGCGTATTCAGTG 59.440 57.895 0.00 0.00 0.00 3.66
376 377 1.821241 CGGCGATGCGTATTCAGTGG 61.821 60.000 0.00 0.00 0.00 4.00
377 378 1.498865 GGCGATGCGTATTCAGTGGG 61.499 60.000 0.00 0.00 0.00 4.61
378 379 0.529773 GCGATGCGTATTCAGTGGGA 60.530 55.000 0.00 0.00 0.00 4.37
379 380 1.491670 CGATGCGTATTCAGTGGGAG 58.508 55.000 0.00 0.00 0.00 4.30
380 381 1.869754 CGATGCGTATTCAGTGGGAGG 60.870 57.143 0.00 0.00 0.00 4.30
381 382 1.412710 GATGCGTATTCAGTGGGAGGA 59.587 52.381 0.00 0.00 0.00 3.71
382 383 0.824109 TGCGTATTCAGTGGGAGGAG 59.176 55.000 0.00 0.00 0.00 3.69
383 384 1.112113 GCGTATTCAGTGGGAGGAGA 58.888 55.000 0.00 0.00 0.00 3.71
384 385 1.202428 GCGTATTCAGTGGGAGGAGAC 60.202 57.143 0.00 0.00 0.00 3.36
385 386 1.065701 CGTATTCAGTGGGAGGAGACG 59.934 57.143 0.00 0.00 0.00 4.18
386 387 2.100989 GTATTCAGTGGGAGGAGACGT 58.899 52.381 0.00 0.00 0.00 4.34
387 388 1.645710 ATTCAGTGGGAGGAGACGTT 58.354 50.000 0.00 0.00 0.00 3.99
388 389 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
409 410 3.970721 TCGACGACGAGGTGCTTA 58.029 55.556 5.75 0.00 43.81 3.09
410 411 1.499056 TCGACGACGAGGTGCTTAC 59.501 57.895 5.75 0.00 43.81 2.34
411 412 1.208358 CGACGACGAGGTGCTTACA 59.792 57.895 0.00 0.00 42.66 2.41
412 413 0.386352 CGACGACGAGGTGCTTACAA 60.386 55.000 0.00 0.00 42.66 2.41
413 414 1.731424 CGACGACGAGGTGCTTACAAT 60.731 52.381 0.00 0.00 42.66 2.71
414 415 2.334838 GACGACGAGGTGCTTACAATT 58.665 47.619 0.00 0.00 0.00 2.32
415 416 3.504863 GACGACGAGGTGCTTACAATTA 58.495 45.455 0.00 0.00 0.00 1.40
416 417 3.248266 ACGACGAGGTGCTTACAATTAC 58.752 45.455 0.00 0.00 0.00 1.89
417 418 3.057033 ACGACGAGGTGCTTACAATTACT 60.057 43.478 0.00 0.00 0.00 2.24
418 419 3.924686 CGACGAGGTGCTTACAATTACTT 59.075 43.478 0.00 0.00 0.00 2.24
419 420 4.031426 CGACGAGGTGCTTACAATTACTTC 59.969 45.833 0.00 0.00 0.00 3.01
420 421 3.924686 ACGAGGTGCTTACAATTACTTCG 59.075 43.478 6.73 6.73 44.70 3.79
421 422 3.924686 CGAGGTGCTTACAATTACTTCGT 59.075 43.478 0.00 0.00 37.70 3.85
422 423 5.097529 CGAGGTGCTTACAATTACTTCGTA 58.902 41.667 0.00 0.00 37.70 3.43
423 424 5.574055 CGAGGTGCTTACAATTACTTCGTAA 59.426 40.000 0.00 0.00 37.70 3.18
424 425 6.089820 CGAGGTGCTTACAATTACTTCGTAAA 59.910 38.462 0.00 0.00 37.70 2.01
425 426 7.201496 CGAGGTGCTTACAATTACTTCGTAAAT 60.201 37.037 0.00 0.00 37.70 1.40
426 427 8.331730 AGGTGCTTACAATTACTTCGTAAATT 57.668 30.769 0.00 0.00 31.56 1.82
427 428 8.789762 AGGTGCTTACAATTACTTCGTAAATTT 58.210 29.630 0.00 0.00 31.56 1.82
428 429 9.058424 GGTGCTTACAATTACTTCGTAAATTTC 57.942 33.333 0.00 0.00 31.56 2.17
429 430 9.601971 GTGCTTACAATTACTTCGTAAATTTCA 57.398 29.630 0.00 0.00 31.56 2.69
442 443 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
443 444 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
444 445 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
445 446 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
446 447 6.551385 AATTTCAAGATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
447 448 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
448 449 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
449 450 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
450 451 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
451 452 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
452 453 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
453 454 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
454 455 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
455 456 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
456 457 0.888619 ATGTCGGCTCAGTCTTTCGA 59.111 50.000 0.00 0.00 0.00 3.71
457 458 0.671796 TGTCGGCTCAGTCTTTCGAA 59.328 50.000 0.00 0.00 0.00 3.71
458 459 1.335964 TGTCGGCTCAGTCTTTCGAAG 60.336 52.381 0.00 0.00 0.00 3.79
459 460 0.243907 TCGGCTCAGTCTTTCGAAGG 59.756 55.000 0.00 0.00 0.00 3.46
460 461 0.038159 CGGCTCAGTCTTTCGAAGGT 60.038 55.000 7.20 0.00 0.00 3.50
461 462 1.433534 GGCTCAGTCTTTCGAAGGTG 58.566 55.000 7.20 0.00 0.00 4.00
462 463 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
463 464 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
464 465 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
465 466 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
466 467 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
467 468 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
468 469 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
469 470 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
470 471 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
471 472 0.830648 TTCGAAGGTGCTCATAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
472 473 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
473 474 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
474 475 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
475 476 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
476 477 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
477 478 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
478 479 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
479 480 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
480 481 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
481 482 1.970226 GCTCATAGGGGTAGGGTGTGT 60.970 57.143 0.00 0.00 0.00 3.72
482 483 1.762957 CTCATAGGGGTAGGGTGTGTG 59.237 57.143 0.00 0.00 0.00 3.82
483 484 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
484 485 1.209504 CATAGGGGTAGGGTGTGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
485 486 0.191563 TAGGGGTAGGGTGTGTGTGT 59.808 55.000 0.00 0.00 0.00 3.72
486 487 1.072505 GGGGTAGGGTGTGTGTGTG 59.927 63.158 0.00 0.00 0.00 3.82
487 488 1.702022 GGGGTAGGGTGTGTGTGTGT 61.702 60.000 0.00 0.00 0.00 3.72
488 489 0.534203 GGGTAGGGTGTGTGTGTGTG 60.534 60.000 0.00 0.00 0.00 3.82
489 490 1.164041 GGTAGGGTGTGTGTGTGTGC 61.164 60.000 0.00 0.00 0.00 4.57
490 491 0.462937 GTAGGGTGTGTGTGTGTGCA 60.463 55.000 0.00 0.00 0.00 4.57
491 492 0.472044 TAGGGTGTGTGTGTGTGCAT 59.528 50.000 0.00 0.00 0.00 3.96
492 493 0.395586 AGGGTGTGTGTGTGTGCATT 60.396 50.000 0.00 0.00 0.00 3.56
493 494 0.030638 GGGTGTGTGTGTGTGCATTC 59.969 55.000 0.00 0.00 0.00 2.67
494 495 0.737804 GGTGTGTGTGTGTGCATTCA 59.262 50.000 0.00 0.00 0.00 2.57
495 496 1.337703 GGTGTGTGTGTGTGCATTCAT 59.662 47.619 0.00 0.00 0.00 2.57
496 497 2.551887 GGTGTGTGTGTGTGCATTCATA 59.448 45.455 0.00 0.00 0.00 2.15
497 498 3.191162 GGTGTGTGTGTGTGCATTCATAT 59.809 43.478 0.00 0.00 0.00 1.78
498 499 4.160594 GTGTGTGTGTGTGCATTCATATG 58.839 43.478 0.00 0.00 34.76 1.78
499 500 3.190953 TGTGTGTGTGTGCATTCATATGG 59.809 43.478 2.13 0.00 32.15 2.74
500 501 2.754002 TGTGTGTGTGCATTCATATGGG 59.246 45.455 2.13 0.00 32.15 4.00
501 502 2.754552 GTGTGTGTGCATTCATATGGGT 59.245 45.455 2.13 0.00 32.15 4.51
502 503 2.754002 TGTGTGTGCATTCATATGGGTG 59.246 45.455 2.13 3.56 32.15 4.61
503 504 3.016031 GTGTGTGCATTCATATGGGTGA 58.984 45.455 2.13 0.00 32.15 4.02
504 505 3.065786 GTGTGTGCATTCATATGGGTGAG 59.934 47.826 2.13 0.00 32.15 3.51
505 506 3.282021 GTGTGCATTCATATGGGTGAGT 58.718 45.455 2.13 0.00 32.15 3.41
506 507 3.065786 GTGTGCATTCATATGGGTGAGTG 59.934 47.826 2.13 0.00 38.45 3.51
507 508 3.282021 GTGCATTCATATGGGTGAGTGT 58.718 45.455 2.13 0.00 37.92 3.55
508 509 4.080638 TGTGCATTCATATGGGTGAGTGTA 60.081 41.667 2.13 0.00 37.92 2.90
509 510 5.065914 GTGCATTCATATGGGTGAGTGTAT 58.934 41.667 2.13 0.00 37.92 2.29
510 511 5.049198 GTGCATTCATATGGGTGAGTGTATG 60.049 44.000 2.13 0.00 37.92 2.39
511 512 4.083110 GCATTCATATGGGTGAGTGTATGC 60.083 45.833 2.13 0.00 37.92 3.14
512 513 3.385193 TCATATGGGTGAGTGTATGCG 57.615 47.619 2.13 0.00 0.00 4.73
513 514 1.800586 CATATGGGTGAGTGTATGCGC 59.199 52.381 0.00 0.00 0.00 6.09
514 515 0.249280 TATGGGTGAGTGTATGCGCG 60.249 55.000 0.00 0.00 0.00 6.86
515 516 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
516 517 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
517 518 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
518 519 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
519 520 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
520 521 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
521 522 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
522 523 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
523 524 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
524 525 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
525 526 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
528 529 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
529 530 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
530 531 0.852777 CGCGTGTATATGAGCGCTTT 59.147 50.000 13.26 5.01 46.56 3.51
531 532 1.395944 CGCGTGTATATGAGCGCTTTG 60.396 52.381 13.26 0.00 46.56 2.77
532 533 1.657538 GCGTGTATATGAGCGCTTTGC 60.658 52.381 13.26 0.00 45.48 3.68
543 544 3.946907 GCTTTGCGTCCGTACTGT 58.053 55.556 0.00 0.00 0.00 3.55
544 545 1.491563 GCTTTGCGTCCGTACTGTG 59.508 57.895 0.00 0.00 0.00 3.66
545 546 1.219522 GCTTTGCGTCCGTACTGTGT 61.220 55.000 0.00 0.00 0.00 3.72
546 547 1.214367 CTTTGCGTCCGTACTGTGTT 58.786 50.000 0.00 0.00 0.00 3.32
547 548 1.191647 CTTTGCGTCCGTACTGTGTTC 59.808 52.381 0.00 0.00 0.00 3.18
548 549 0.102663 TTGCGTCCGTACTGTGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
549 550 0.102663 TGCGTCCGTACTGTGTTCAA 59.897 50.000 0.00 0.00 0.00 2.69
550 551 1.210870 GCGTCCGTACTGTGTTCAAA 58.789 50.000 0.00 0.00 0.00 2.69
551 552 1.593933 GCGTCCGTACTGTGTTCAAAA 59.406 47.619 0.00 0.00 0.00 2.44
552 553 2.030701 GCGTCCGTACTGTGTTCAAAAA 59.969 45.455 0.00 0.00 0.00 1.94
617 618 8.353423 AGCATATTTGGAAGTATGAACAAAGT 57.647 30.769 6.18 0.00 36.41 2.66
618 619 9.461312 AGCATATTTGGAAGTATGAACAAAGTA 57.539 29.630 6.18 0.00 36.41 2.24
668 669 6.961359 AGAAAAACAGAAAAAGAAAACGGG 57.039 33.333 0.00 0.00 0.00 5.28
669 670 5.872617 AGAAAAACAGAAAAAGAAAACGGGG 59.127 36.000 0.00 0.00 0.00 5.73
670 671 2.882927 ACAGAAAAAGAAAACGGGGC 57.117 45.000 0.00 0.00 0.00 5.80
671 672 1.411246 ACAGAAAAAGAAAACGGGGCC 59.589 47.619 0.00 0.00 0.00 5.80
672 673 1.410882 CAGAAAAAGAAAACGGGGCCA 59.589 47.619 4.39 0.00 0.00 5.36
673 674 2.037121 CAGAAAAAGAAAACGGGGCCAT 59.963 45.455 4.39 0.00 0.00 4.40
674 675 2.037121 AGAAAAAGAAAACGGGGCCATG 59.963 45.455 4.39 0.00 0.00 3.66
675 676 0.684535 AAAAGAAAACGGGGCCATGG 59.315 50.000 7.63 7.63 0.00 3.66
676 677 1.826340 AAAGAAAACGGGGCCATGGC 61.826 55.000 29.47 29.47 41.06 4.40
677 678 4.128388 GAAAACGGGGCCATGGCG 62.128 66.667 29.90 18.88 43.06 5.69
678 679 4.986708 AAAACGGGGCCATGGCGT 62.987 61.111 29.90 19.57 43.06 5.68
727 728 4.344865 GGGAAGCCCTTGCCGTGA 62.345 66.667 2.74 0.00 41.15 4.35
728 729 2.747855 GGAAGCCCTTGCCGTGAG 60.748 66.667 0.00 0.00 38.69 3.51
729 730 2.347490 GAAGCCCTTGCCGTGAGA 59.653 61.111 0.00 0.00 38.69 3.27
730 731 2.032681 AAGCCCTTGCCGTGAGAC 59.967 61.111 0.00 0.00 38.69 3.36
731 732 2.731691 GAAGCCCTTGCCGTGAGACA 62.732 60.000 0.00 0.00 38.69 3.41
732 733 2.045926 GCCCTTGCCGTGAGACAT 60.046 61.111 0.00 0.00 0.00 3.06
733 734 1.220749 GCCCTTGCCGTGAGACATA 59.779 57.895 0.00 0.00 0.00 2.29
734 735 0.179045 GCCCTTGCCGTGAGACATAT 60.179 55.000 0.00 0.00 0.00 1.78
735 736 1.871080 CCCTTGCCGTGAGACATATC 58.129 55.000 0.00 0.00 0.00 1.63
736 737 1.491670 CCTTGCCGTGAGACATATCG 58.508 55.000 0.00 0.00 0.00 2.92
737 738 0.855349 CTTGCCGTGAGACATATCGC 59.145 55.000 0.00 0.00 0.00 4.58
740 741 3.527186 CGTGAGACATATCGCGGC 58.473 61.111 6.13 0.00 46.62 6.53
741 742 2.016704 CGTGAGACATATCGCGGCC 61.017 63.158 6.13 0.00 46.62 6.13
742 743 1.664965 GTGAGACATATCGCGGCCC 60.665 63.158 6.13 0.00 0.00 5.80
743 744 2.430921 GAGACATATCGCGGCCCG 60.431 66.667 6.13 0.00 38.61 6.13
744 745 3.916392 GAGACATATCGCGGCCCGG 62.916 68.421 4.77 0.00 37.59 5.73
760 761 2.260434 GGCACTCCGCTGTAACGA 59.740 61.111 0.00 0.00 41.91 3.85
761 762 1.805945 GGCACTCCGCTGTAACGAG 60.806 63.158 0.00 0.00 41.91 4.18
762 763 2.445438 GCACTCCGCTGTAACGAGC 61.445 63.158 0.00 0.00 37.77 5.03
840 844 2.838202 TCGCTTTTCCTTCCCTATCACT 59.162 45.455 0.00 0.00 0.00 3.41
863 867 0.738389 CTCTCTCTGTCTTCCTCCGC 59.262 60.000 0.00 0.00 0.00 5.54
871 875 4.069232 CTTCCTCCGCCGCACTCA 62.069 66.667 0.00 0.00 0.00 3.41
932 937 1.042229 TCCCAATATACCCGGTCACG 58.958 55.000 0.00 0.00 40.55 4.35
936 941 3.272581 CCAATATACCCGGTCACGTTTT 58.727 45.455 0.00 0.00 38.78 2.43
955 960 2.871096 TGCATCGGGTAAGGTTCTTT 57.129 45.000 0.00 0.00 0.00 2.52
965 970 1.995376 AAGGTTCTTTTGATGGCGGT 58.005 45.000 0.00 0.00 0.00 5.68
1206 1220 8.102484 AGTTTAAGCCCTTGGAAGATAATCTA 57.898 34.615 0.00 0.00 0.00 1.98
1285 5180 1.684869 GGAATTTCCGAGGGGATGCAA 60.685 52.381 0.00 0.00 43.41 4.08
1336 5270 5.132480 TGGATCCAGATACATGATGTTCCAA 59.868 40.000 11.44 0.00 0.00 3.53
1493 5430 2.360483 ACGCTGTGTCTATGATCAGAGG 59.640 50.000 17.01 2.12 33.39 3.69
1536 5477 3.777522 AGGGTAAAGTATGAGAAGCTGCT 59.222 43.478 0.00 0.00 0.00 4.24
1750 5691 2.813474 CGCGAGGCCGACATGAAA 60.813 61.111 0.00 0.00 38.22 2.69
1854 5796 0.969894 CTCACGAGGAAGAGGTTGGT 59.030 55.000 0.00 0.00 0.00 3.67
2042 22858 2.282180 GTTTGGCGGGCTCCTTCA 60.282 61.111 2.38 0.00 0.00 3.02
2073 22889 2.440980 GGCCCAATGAGTGCCCTC 60.441 66.667 0.00 0.00 39.30 4.30
2084 22900 1.073897 GTGCCCTCTGCTGGAACTT 59.926 57.895 0.00 0.00 42.00 2.66
2146 22962 3.004734 CGAATTTGTGAGGAAGTTTGCCT 59.995 43.478 0.00 0.00 38.81 4.75
2349 23165 2.243810 GTATCTGTAGAGGAGCAGGGG 58.756 57.143 0.00 0.00 33.81 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.684448 TGAAAATGTCAAATGCGTATAGAAAAA 57.316 25.926 0.00 0.00 31.51 1.94
42 43 9.684448 TTGAAAATGTCAAATGCGTATAGAAAA 57.316 25.926 0.00 0.00 43.43 2.29
56 57 9.322773 TGTTAATCAAGCATTTGAAAATGTCAA 57.677 25.926 15.27 0.00 45.82 3.18
57 58 8.883954 TGTTAATCAAGCATTTGAAAATGTCA 57.116 26.923 15.27 0.00 45.82 3.58
215 216 9.941325 AAACATTATGAAAATGCTAACCAATCA 57.059 25.926 0.00 0.00 0.00 2.57
231 232 9.509855 GGTTCGCATTTATGTAAAACATTATGA 57.490 29.630 0.00 0.00 39.88 2.15
232 233 9.295214 TGGTTCGCATTTATGTAAAACATTATG 57.705 29.630 0.00 4.65 39.88 1.90
233 234 9.862371 TTGGTTCGCATTTATGTAAAACATTAT 57.138 25.926 0.00 0.00 39.88 1.28
234 235 9.862371 ATTGGTTCGCATTTATGTAAAACATTA 57.138 25.926 0.00 0.00 39.88 1.90
235 236 8.655092 CATTGGTTCGCATTTATGTAAAACATT 58.345 29.630 0.00 0.00 39.88 2.71
236 237 7.816995 ACATTGGTTCGCATTTATGTAAAACAT 59.183 29.630 0.00 0.00 42.35 2.71
237 238 7.115520 CACATTGGTTCGCATTTATGTAAAACA 59.884 33.333 0.00 0.00 0.00 2.83
238 239 7.115663 ACACATTGGTTCGCATTTATGTAAAAC 59.884 33.333 0.00 0.00 0.00 2.43
239 240 7.115520 CACACATTGGTTCGCATTTATGTAAAA 59.884 33.333 0.00 0.00 0.00 1.52
240 241 6.584184 CACACATTGGTTCGCATTTATGTAAA 59.416 34.615 0.00 0.00 0.00 2.01
241 242 6.089476 CACACATTGGTTCGCATTTATGTAA 58.911 36.000 0.00 0.00 0.00 2.41
242 243 5.392487 CCACACATTGGTTCGCATTTATGTA 60.392 40.000 0.00 0.00 41.10 2.29
243 244 4.484236 CACACATTGGTTCGCATTTATGT 58.516 39.130 0.00 0.00 0.00 2.29
244 245 3.858812 CCACACATTGGTTCGCATTTATG 59.141 43.478 0.00 0.00 41.10 1.90
245 246 4.108699 CCACACATTGGTTCGCATTTAT 57.891 40.909 0.00 0.00 41.10 1.40
246 247 3.567576 CCACACATTGGTTCGCATTTA 57.432 42.857 0.00 0.00 41.10 1.40
247 248 2.437200 CCACACATTGGTTCGCATTT 57.563 45.000 0.00 0.00 41.10 2.32
257 258 4.078537 TCTAACCATCCAACCACACATTG 58.921 43.478 0.00 0.00 0.00 2.82
258 259 4.335416 CTCTAACCATCCAACCACACATT 58.665 43.478 0.00 0.00 0.00 2.71
259 260 3.308402 CCTCTAACCATCCAACCACACAT 60.308 47.826 0.00 0.00 0.00 3.21
260 261 2.039746 CCTCTAACCATCCAACCACACA 59.960 50.000 0.00 0.00 0.00 3.72
261 262 2.618045 CCCTCTAACCATCCAACCACAC 60.618 54.545 0.00 0.00 0.00 3.82
262 263 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
263 264 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
264 265 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
265 266 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
266 267 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
267 268 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
268 269 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
269 270 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
270 271 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
271 272 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
272 273 3.484953 ATACCACAGTCCCTCTAACCA 57.515 47.619 0.00 0.00 0.00 3.67
273 274 3.134262 GGAATACCACAGTCCCTCTAACC 59.866 52.174 0.00 0.00 35.23 2.85
274 275 4.403585 GGAATACCACAGTCCCTCTAAC 57.596 50.000 0.00 0.00 35.23 2.34
281 282 0.107165 GGCTGGGAATACCACAGTCC 60.107 60.000 0.00 0.00 46.80 3.85
282 283 0.107165 GGGCTGGGAATACCACAGTC 60.107 60.000 0.00 0.00 46.80 3.51
283 284 0.844661 TGGGCTGGGAATACCACAGT 60.845 55.000 0.00 0.00 46.80 3.55
284 285 0.552848 ATGGGCTGGGAATACCACAG 59.447 55.000 0.00 0.00 46.80 3.66
285 286 0.550914 GATGGGCTGGGAATACCACA 59.449 55.000 0.00 0.00 46.80 4.17
286 287 0.550914 TGATGGGCTGGGAATACCAC 59.449 55.000 0.00 0.00 46.80 4.16
288 289 0.111253 CCTGATGGGCTGGGAATACC 59.889 60.000 0.00 0.00 40.81 2.73
289 290 3.733709 CCTGATGGGCTGGGAATAC 57.266 57.895 0.00 0.00 32.31 1.89
300 301 4.202441 CACTAGGATTTGAACCCTGATGG 58.798 47.826 0.00 0.00 41.37 3.51
301 302 3.629398 GCACTAGGATTTGAACCCTGATG 59.371 47.826 0.00 0.00 34.11 3.07
302 303 3.525199 AGCACTAGGATTTGAACCCTGAT 59.475 43.478 0.00 0.00 34.11 2.90
303 304 2.912956 AGCACTAGGATTTGAACCCTGA 59.087 45.455 0.00 0.00 34.11 3.86
304 305 3.274288 GAGCACTAGGATTTGAACCCTG 58.726 50.000 0.00 0.00 34.11 4.45
305 306 2.093447 CGAGCACTAGGATTTGAACCCT 60.093 50.000 0.00 0.00 36.60 4.34
306 307 2.280628 CGAGCACTAGGATTTGAACCC 58.719 52.381 0.00 0.00 0.00 4.11
307 308 1.666189 GCGAGCACTAGGATTTGAACC 59.334 52.381 0.00 0.00 0.00 3.62
308 309 2.346803 TGCGAGCACTAGGATTTGAAC 58.653 47.619 0.00 0.00 0.00 3.18
309 310 2.760634 TGCGAGCACTAGGATTTGAA 57.239 45.000 0.00 0.00 0.00 2.69
310 311 2.988010 ATGCGAGCACTAGGATTTGA 57.012 45.000 0.00 0.00 0.00 2.69
311 312 5.679734 ATAAATGCGAGCACTAGGATTTG 57.320 39.130 16.52 0.00 37.01 2.32
312 313 6.699575 AAATAAATGCGAGCACTAGGATTT 57.300 33.333 13.08 13.08 38.97 2.17
313 314 6.699575 AAAATAAATGCGAGCACTAGGATT 57.300 33.333 0.00 0.00 0.00 3.01
314 315 6.460123 CCAAAAATAAATGCGAGCACTAGGAT 60.460 38.462 0.00 0.00 0.00 3.24
315 316 5.163663 CCAAAAATAAATGCGAGCACTAGGA 60.164 40.000 0.00 0.00 0.00 2.94
316 317 5.036737 CCAAAAATAAATGCGAGCACTAGG 58.963 41.667 0.00 0.00 0.00 3.02
317 318 5.879237 TCCAAAAATAAATGCGAGCACTAG 58.121 37.500 0.00 0.00 0.00 2.57
318 319 5.888691 TCCAAAAATAAATGCGAGCACTA 57.111 34.783 0.00 0.00 0.00 2.74
319 320 4.782019 TCCAAAAATAAATGCGAGCACT 57.218 36.364 0.00 0.00 0.00 4.40
320 321 6.407475 AAATCCAAAAATAAATGCGAGCAC 57.593 33.333 0.00 0.00 0.00 4.40
321 322 8.715191 AATAAATCCAAAAATAAATGCGAGCA 57.285 26.923 0.00 0.00 0.00 4.26
322 323 9.986833 AAAATAAATCCAAAAATAAATGCGAGC 57.013 25.926 0.00 0.00 0.00 5.03
333 334 8.787852 CCGGAAATCCAAAAATAAATCCAAAAA 58.212 29.630 0.00 0.00 35.14 1.94
334 335 7.094592 GCCGGAAATCCAAAAATAAATCCAAAA 60.095 33.333 5.05 0.00 35.14 2.44
335 336 6.372937 GCCGGAAATCCAAAAATAAATCCAAA 59.627 34.615 5.05 0.00 35.14 3.28
336 337 5.877564 GCCGGAAATCCAAAAATAAATCCAA 59.122 36.000 5.05 0.00 35.14 3.53
337 338 5.423886 GCCGGAAATCCAAAAATAAATCCA 58.576 37.500 5.05 0.00 35.14 3.41
338 339 4.506288 CGCCGGAAATCCAAAAATAAATCC 59.494 41.667 5.05 0.00 35.14 3.01
339 340 5.344884 TCGCCGGAAATCCAAAAATAAATC 58.655 37.500 5.05 0.00 35.14 2.17
340 341 5.331876 TCGCCGGAAATCCAAAAATAAAT 57.668 34.783 5.05 0.00 35.14 1.40
341 342 4.785511 TCGCCGGAAATCCAAAAATAAA 57.214 36.364 5.05 0.00 35.14 1.40
342 343 4.677584 CATCGCCGGAAATCCAAAAATAA 58.322 39.130 5.05 0.00 35.14 1.40
343 344 3.490078 GCATCGCCGGAAATCCAAAAATA 60.490 43.478 5.05 0.00 35.14 1.40
344 345 2.738321 GCATCGCCGGAAATCCAAAAAT 60.738 45.455 5.05 0.00 35.14 1.82
345 346 1.403514 GCATCGCCGGAAATCCAAAAA 60.404 47.619 5.05 0.00 35.14 1.94
346 347 0.172352 GCATCGCCGGAAATCCAAAA 59.828 50.000 5.05 0.00 35.14 2.44
347 348 1.806568 GCATCGCCGGAAATCCAAA 59.193 52.632 5.05 0.00 35.14 3.28
348 349 2.468670 CGCATCGCCGGAAATCCAA 61.469 57.895 5.05 0.00 35.14 3.53
349 350 2.299503 TACGCATCGCCGGAAATCCA 62.300 55.000 5.05 0.00 35.14 3.41
350 351 0.949105 ATACGCATCGCCGGAAATCC 60.949 55.000 5.05 0.00 0.00 3.01
351 352 0.865769 AATACGCATCGCCGGAAATC 59.134 50.000 5.05 0.00 0.00 2.17
352 353 0.865769 GAATACGCATCGCCGGAAAT 59.134 50.000 5.05 0.00 0.00 2.17
353 354 0.460459 TGAATACGCATCGCCGGAAA 60.460 50.000 5.05 0.00 0.00 3.13
354 355 0.874175 CTGAATACGCATCGCCGGAA 60.874 55.000 5.05 0.00 0.00 4.30
355 356 1.299850 CTGAATACGCATCGCCGGA 60.300 57.895 5.05 0.00 0.00 5.14
356 357 1.591594 ACTGAATACGCATCGCCGG 60.592 57.895 0.00 0.00 0.00 6.13
357 358 1.559814 CACTGAATACGCATCGCCG 59.440 57.895 0.00 0.00 0.00 6.46
358 359 1.498865 CCCACTGAATACGCATCGCC 61.499 60.000 0.00 0.00 0.00 5.54
359 360 0.529773 TCCCACTGAATACGCATCGC 60.530 55.000 0.00 0.00 0.00 4.58
360 361 1.491670 CTCCCACTGAATACGCATCG 58.508 55.000 0.00 0.00 0.00 3.84
361 362 1.412710 TCCTCCCACTGAATACGCATC 59.587 52.381 0.00 0.00 0.00 3.91
362 363 1.414181 CTCCTCCCACTGAATACGCAT 59.586 52.381 0.00 0.00 0.00 4.73
363 364 0.824109 CTCCTCCCACTGAATACGCA 59.176 55.000 0.00 0.00 0.00 5.24
364 365 1.112113 TCTCCTCCCACTGAATACGC 58.888 55.000 0.00 0.00 0.00 4.42
365 366 1.065701 CGTCTCCTCCCACTGAATACG 59.934 57.143 0.00 0.00 0.00 3.06
366 367 2.100989 ACGTCTCCTCCCACTGAATAC 58.899 52.381 0.00 0.00 0.00 1.89
367 368 2.526888 ACGTCTCCTCCCACTGAATA 57.473 50.000 0.00 0.00 0.00 1.75
368 369 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
369 370 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
370 371 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
371 372 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
372 373 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
391 392 0.792356 GTAAGCACCTCGTCGTCGAC 60.792 60.000 15.51 15.51 41.35 4.20
392 393 1.229975 TGTAAGCACCTCGTCGTCGA 61.230 55.000 4.42 4.42 44.12 4.20
393 394 0.386352 TTGTAAGCACCTCGTCGTCG 60.386 55.000 0.00 0.00 38.55 5.12
394 395 1.992170 ATTGTAAGCACCTCGTCGTC 58.008 50.000 0.00 0.00 0.00 4.20
395 396 2.450609 AATTGTAAGCACCTCGTCGT 57.549 45.000 0.00 0.00 0.00 4.34
396 397 3.508762 AGTAATTGTAAGCACCTCGTCG 58.491 45.455 0.00 0.00 0.00 5.12
397 398 4.031426 CGAAGTAATTGTAAGCACCTCGTC 59.969 45.833 0.00 0.00 0.00 4.20
398 399 3.924686 CGAAGTAATTGTAAGCACCTCGT 59.075 43.478 0.00 0.00 0.00 4.18
399 400 3.924686 ACGAAGTAATTGTAAGCACCTCG 59.075 43.478 0.00 0.00 41.94 4.63
416 417 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
417 418 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
418 419 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
419 420 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
420 421 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
421 422 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
422 423 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
423 424 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
424 425 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
425 426 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
426 427 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
427 428 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
428 429 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
429 430 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
430 431 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
431 432 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
432 433 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
433 434 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
434 435 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
435 436 2.688446 TCGAAAGACTGAGCCGACATAT 59.312 45.455 0.00 0.00 33.31 1.78
436 437 2.089201 TCGAAAGACTGAGCCGACATA 58.911 47.619 0.00 0.00 33.31 2.29
437 438 0.888619 TCGAAAGACTGAGCCGACAT 59.111 50.000 0.00 0.00 33.31 3.06
438 439 0.671796 TTCGAAAGACTGAGCCGACA 59.328 50.000 0.00 0.00 41.84 4.35
439 440 1.341606 CTTCGAAAGACTGAGCCGAC 58.658 55.000 0.00 0.00 41.84 4.79
440 441 0.243907 CCTTCGAAAGACTGAGCCGA 59.756 55.000 0.00 0.00 41.84 5.54
441 442 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 41.84 5.52
442 443 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
443 444 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
444 445 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
445 446 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
446 447 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
447 448 3.118956 CCTATGAGCACCTTCGAAAGACT 60.119 47.826 0.00 0.00 41.84 3.24
448 449 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
449 450 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
450 451 2.555199 CCCTATGAGCACCTTCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
451 452 1.209504 CCCCTATGAGCACCTTCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
452 453 0.830648 CCCCTATGAGCACCTTCGAA 59.169 55.000 0.00 0.00 0.00 3.71
453 454 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
454 455 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
455 456 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
456 457 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
457 458 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
458 459 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
459 460 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
460 461 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
461 462 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
462 463 1.762957 CACACACCCTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
463 464 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
464 465 1.209504 CACACACACCCTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
465 466 1.203389 ACACACACACCCTACCCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
466 467 0.191563 ACACACACACCCTACCCCTA 59.808 55.000 0.00 0.00 0.00 3.53
467 468 1.074014 ACACACACACCCTACCCCT 60.074 57.895 0.00 0.00 0.00 4.79
468 469 1.072505 CACACACACACCCTACCCC 59.927 63.158 0.00 0.00 0.00 4.95
469 470 0.534203 CACACACACACACCCTACCC 60.534 60.000 0.00 0.00 0.00 3.69
470 471 1.164041 GCACACACACACACCCTACC 61.164 60.000 0.00 0.00 0.00 3.18
471 472 0.462937 TGCACACACACACACCCTAC 60.463 55.000 0.00 0.00 0.00 3.18
472 473 0.472044 ATGCACACACACACACCCTA 59.528 50.000 0.00 0.00 0.00 3.53
473 474 0.395586 AATGCACACACACACACCCT 60.396 50.000 0.00 0.00 0.00 4.34
474 475 0.030638 GAATGCACACACACACACCC 59.969 55.000 0.00 0.00 0.00 4.61
475 476 0.737804 TGAATGCACACACACACACC 59.262 50.000 0.00 0.00 0.00 4.16
476 477 2.780065 ATGAATGCACACACACACAC 57.220 45.000 0.00 0.00 0.00 3.82
477 478 3.190953 CCATATGAATGCACACACACACA 59.809 43.478 3.65 0.00 0.00 3.72
478 479 3.427909 CCCATATGAATGCACACACACAC 60.428 47.826 3.65 0.00 0.00 3.82
479 480 2.754002 CCCATATGAATGCACACACACA 59.246 45.455 3.65 0.00 0.00 3.72
480 481 2.754552 ACCCATATGAATGCACACACAC 59.245 45.455 3.65 0.00 0.00 3.82
481 482 2.754002 CACCCATATGAATGCACACACA 59.246 45.455 3.65 0.00 0.00 3.72
482 483 3.016031 TCACCCATATGAATGCACACAC 58.984 45.455 3.65 0.00 0.00 3.82
483 484 3.281158 CTCACCCATATGAATGCACACA 58.719 45.455 3.65 0.00 0.00 3.72
484 485 3.065786 CACTCACCCATATGAATGCACAC 59.934 47.826 3.65 0.00 0.00 3.82
485 486 3.281158 CACTCACCCATATGAATGCACA 58.719 45.455 3.65 0.00 0.00 4.57
486 487 3.282021 ACACTCACCCATATGAATGCAC 58.718 45.455 3.65 0.00 28.78 4.57
487 488 3.650281 ACACTCACCCATATGAATGCA 57.350 42.857 3.65 0.00 28.78 3.96
488 489 4.083110 GCATACACTCACCCATATGAATGC 60.083 45.833 3.65 2.13 34.00 3.56
489 490 4.152938 CGCATACACTCACCCATATGAATG 59.847 45.833 3.65 2.01 32.12 2.67
490 491 4.318332 CGCATACACTCACCCATATGAAT 58.682 43.478 3.65 0.00 0.00 2.57
491 492 3.727726 CGCATACACTCACCCATATGAA 58.272 45.455 3.65 0.00 0.00 2.57
492 493 2.547855 GCGCATACACTCACCCATATGA 60.548 50.000 0.30 0.00 0.00 2.15
493 494 1.800586 GCGCATACACTCACCCATATG 59.199 52.381 0.30 0.00 0.00 1.78
494 495 1.605457 CGCGCATACACTCACCCATAT 60.605 52.381 8.75 0.00 0.00 1.78
495 496 0.249280 CGCGCATACACTCACCCATA 60.249 55.000 8.75 0.00 0.00 2.74
496 497 1.521457 CGCGCATACACTCACCCAT 60.521 57.895 8.75 0.00 0.00 4.00
497 498 2.125713 CGCGCATACACTCACCCA 60.126 61.111 8.75 0.00 0.00 4.51
498 499 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
499 500 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
500 501 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
501 502 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
502 503 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
503 504 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
504 505 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
505 506 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
506 507 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
507 508 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
508 509 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
509 510 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
513 514 2.285319 GCAAAGCGCTCATATACACG 57.715 50.000 12.06 0.00 37.77 4.49
526 527 1.219522 ACACAGTACGGACGCAAAGC 61.220 55.000 0.00 0.00 0.00 3.51
527 528 1.191647 GAACACAGTACGGACGCAAAG 59.808 52.381 0.00 0.00 0.00 2.77
528 529 1.210870 GAACACAGTACGGACGCAAA 58.789 50.000 0.00 0.00 0.00 3.68
529 530 0.102663 TGAACACAGTACGGACGCAA 59.897 50.000 0.00 0.00 0.00 4.85
530 531 0.102663 TTGAACACAGTACGGACGCA 59.897 50.000 0.00 0.00 0.00 5.24
531 532 1.210870 TTTGAACACAGTACGGACGC 58.789 50.000 0.00 0.00 0.00 5.19
532 533 3.929417 TTTTTGAACACAGTACGGACG 57.071 42.857 0.00 0.00 0.00 4.79
591 592 9.461312 ACTTTGTTCATACTTCCAAATATGCTA 57.539 29.630 0.00 0.00 0.00 3.49
592 593 8.353423 ACTTTGTTCATACTTCCAAATATGCT 57.647 30.769 0.00 0.00 0.00 3.79
642 643 8.927721 CCCGTTTTCTTTTTCTGTTTTTCTTTA 58.072 29.630 0.00 0.00 0.00 1.85
643 644 7.094975 CCCCGTTTTCTTTTTCTGTTTTTCTTT 60.095 33.333 0.00 0.00 0.00 2.52
644 645 6.370442 CCCCGTTTTCTTTTTCTGTTTTTCTT 59.630 34.615 0.00 0.00 0.00 2.52
645 646 5.872617 CCCCGTTTTCTTTTTCTGTTTTTCT 59.127 36.000 0.00 0.00 0.00 2.52
646 647 5.446741 GCCCCGTTTTCTTTTTCTGTTTTTC 60.447 40.000 0.00 0.00 0.00 2.29
647 648 4.393680 GCCCCGTTTTCTTTTTCTGTTTTT 59.606 37.500 0.00 0.00 0.00 1.94
648 649 3.936453 GCCCCGTTTTCTTTTTCTGTTTT 59.064 39.130 0.00 0.00 0.00 2.43
649 650 3.527533 GCCCCGTTTTCTTTTTCTGTTT 58.472 40.909 0.00 0.00 0.00 2.83
650 651 2.159014 GGCCCCGTTTTCTTTTTCTGTT 60.159 45.455 0.00 0.00 0.00 3.16
651 652 1.411246 GGCCCCGTTTTCTTTTTCTGT 59.589 47.619 0.00 0.00 0.00 3.41
652 653 1.410882 TGGCCCCGTTTTCTTTTTCTG 59.589 47.619 0.00 0.00 0.00 3.02
653 654 1.783071 TGGCCCCGTTTTCTTTTTCT 58.217 45.000 0.00 0.00 0.00 2.52
654 655 2.412870 CATGGCCCCGTTTTCTTTTTC 58.587 47.619 0.00 0.00 0.00 2.29
655 656 1.071542 CCATGGCCCCGTTTTCTTTTT 59.928 47.619 0.00 0.00 0.00 1.94
656 657 0.684535 CCATGGCCCCGTTTTCTTTT 59.315 50.000 0.00 0.00 0.00 2.27
657 658 1.826340 GCCATGGCCCCGTTTTCTTT 61.826 55.000 27.24 0.00 34.56 2.52
658 659 2.282783 GCCATGGCCCCGTTTTCTT 61.283 57.895 27.24 0.00 34.56 2.52
659 660 2.679996 GCCATGGCCCCGTTTTCT 60.680 61.111 27.24 0.00 34.56 2.52
660 661 4.128388 CGCCATGGCCCCGTTTTC 62.128 66.667 30.79 0.24 37.98 2.29
661 662 4.986708 ACGCCATGGCCCCGTTTT 62.987 61.111 30.79 3.64 37.98 2.43
710 711 4.344865 TCACGGCAAGGGCTTCCC 62.345 66.667 0.00 0.00 45.90 3.97
711 712 2.747855 CTCACGGCAAGGGCTTCC 60.748 66.667 0.00 0.00 40.87 3.46
712 713 2.035442 GTCTCACGGCAAGGGCTTC 61.035 63.158 0.00 0.00 40.87 3.86
713 714 2.032681 GTCTCACGGCAAGGGCTT 59.967 61.111 0.00 0.00 40.87 4.35
714 715 1.264749 TATGTCTCACGGCAAGGGCT 61.265 55.000 0.00 0.00 40.87 5.19
715 716 0.179045 ATATGTCTCACGGCAAGGGC 60.179 55.000 0.00 0.00 40.13 5.19
716 717 1.869754 CGATATGTCTCACGGCAAGGG 60.870 57.143 0.00 0.00 0.00 3.95
717 718 1.491670 CGATATGTCTCACGGCAAGG 58.508 55.000 0.00 0.00 0.00 3.61
718 719 0.855349 GCGATATGTCTCACGGCAAG 59.145 55.000 0.00 0.00 0.00 4.01
719 720 0.869880 CGCGATATGTCTCACGGCAA 60.870 55.000 0.00 0.00 0.00 4.52
720 721 1.299089 CGCGATATGTCTCACGGCA 60.299 57.895 0.00 0.00 0.00 5.69
721 722 2.016704 CCGCGATATGTCTCACGGC 61.017 63.158 8.23 0.00 33.46 5.68
722 723 2.016704 GCCGCGATATGTCTCACGG 61.017 63.158 8.23 9.92 43.37 4.94
723 724 2.016704 GGCCGCGATATGTCTCACG 61.017 63.158 8.23 0.00 0.00 4.35
724 725 1.664965 GGGCCGCGATATGTCTCAC 60.665 63.158 8.23 0.00 0.00 3.51
725 726 2.734591 GGGCCGCGATATGTCTCA 59.265 61.111 8.23 0.00 0.00 3.27
726 727 2.430921 CGGGCCGCGATATGTCTC 60.431 66.667 15.42 0.00 0.00 3.36
727 728 3.991051 CCGGGCCGCGATATGTCT 61.991 66.667 23.20 0.00 0.00 3.41
744 745 2.445438 GCTCGTTACAGCGGAGTGC 61.445 63.158 0.00 0.00 46.98 4.40
745 746 3.768632 GCTCGTTACAGCGGAGTG 58.231 61.111 0.00 0.00 0.00 3.51
759 760 1.946475 AACCCTAACTCGAGCCGCTC 61.946 60.000 13.61 10.59 0.00 5.03
760 761 1.542187 AAACCCTAACTCGAGCCGCT 61.542 55.000 13.61 0.00 0.00 5.52
761 762 0.672711 AAAACCCTAACTCGAGCCGC 60.673 55.000 13.61 0.00 0.00 6.53
762 763 1.463444 CAAAAACCCTAACTCGAGCCG 59.537 52.381 13.61 0.38 0.00 5.52
763 764 2.501261 ACAAAAACCCTAACTCGAGCC 58.499 47.619 13.61 0.00 0.00 4.70
764 765 4.275196 AGAAACAAAAACCCTAACTCGAGC 59.725 41.667 13.61 0.00 0.00 5.03
840 844 3.684130 CGGAGGAAGACAGAGAGAGATCA 60.684 52.174 0.00 0.00 0.00 2.92
871 875 1.320344 TGCCTAACCTCACGCGAGAT 61.320 55.000 15.93 0.00 42.34 2.75
879 883 0.984230 CTGTTCCCTGCCTAACCTCA 59.016 55.000 0.00 0.00 0.00 3.86
913 917 1.042229 CGTGACCGGGTATATTGGGA 58.958 55.000 6.32 0.00 0.00 4.37
932 937 2.817844 AGAACCTTACCCGATGCAAAAC 59.182 45.455 0.00 0.00 0.00 2.43
936 941 2.817258 CAAAAGAACCTTACCCGATGCA 59.183 45.455 0.00 0.00 0.00 3.96
955 960 1.304052 CCCCTTCAACCGCCATCAA 60.304 57.895 0.00 0.00 0.00 2.57
1080 1094 2.902486 CCTAGCCAGAGCAATCCATCTA 59.098 50.000 0.00 0.00 43.56 1.98
1151 1165 2.037641 TGCGCTATATTCCATGCTGACT 59.962 45.455 9.73 0.00 0.00 3.41
1285 5180 3.490759 CGTCGGCGCAAGAAGCAT 61.491 61.111 10.83 0.00 46.13 3.79
1336 5270 2.664402 ACCAGGTGAGCAAACAGATT 57.336 45.000 0.00 0.00 0.00 2.40
1536 5477 2.593148 ACACGGCGCACCAATCAA 60.593 55.556 10.83 0.00 34.57 2.57
1750 5691 1.988107 TCCTGATGAGCTGGGAAGTTT 59.012 47.619 0.00 0.00 36.34 2.66
1958 22772 2.292323 GGGTCCTCTTGGGTTCTCTCTA 60.292 54.545 0.00 0.00 36.25 2.43
1988 22804 2.651455 CTGTCCATCACTGCCATCATT 58.349 47.619 0.00 0.00 0.00 2.57
2073 22889 0.671781 CTCCACGGAAGTTCCAGCAG 60.672 60.000 21.76 7.78 46.40 4.24
2146 22962 5.193124 TCTCCACAATACAGAGTAGGGTAGA 59.807 44.000 0.00 0.00 0.00 2.59
2302 23118 5.578157 AGGTGGTAAACAGAGTAACCAAT 57.422 39.130 6.03 0.00 43.34 3.16
2349 23165 3.952967 ACGTTAGTCTCCACTTATCCTCC 59.047 47.826 0.00 0.00 33.62 4.30
2403 23219 3.388308 TCAAAATTGTCCATGTTTGGCG 58.612 40.909 4.86 0.00 43.29 5.69
2404 23220 5.055812 TCTTCAAAATTGTCCATGTTTGGC 58.944 37.500 4.86 0.00 43.29 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.