Multiple sequence alignment - TraesCS6A01G098600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G098600 chr6A 100.000 4596 0 0 1 4596 65796793 65801388 0.000000e+00 8488.0
1 TraesCS6A01G098600 chr6A 94.280 2168 97 21 1464 3607 65683920 65681756 0.000000e+00 3291.0
2 TraesCS6A01G098600 chr6A 92.672 232 15 2 1238 1469 65684223 65683994 2.650000e-87 333.0
3 TraesCS6A01G098600 chr6A 92.029 138 11 0 1065 1202 65684426 65684289 1.300000e-45 195.0
4 TraesCS6A01G098600 chr6A 100.000 38 0 0 356 393 65797111 65797148 2.290000e-08 71.3
5 TraesCS6A01G098600 chr6A 100.000 38 0 0 319 356 65797148 65797185 2.290000e-08 71.3
6 TraesCS6A01G098600 chr6D 92.489 3475 173 44 356 3769 48870120 48866673 0.000000e+00 4891.0
7 TraesCS6A01G098600 chr6D 96.019 1884 69 4 1725 3607 49219227 49221105 0.000000e+00 3059.0
8 TraesCS6A01G098600 chr6D 91.292 356 21 6 1 356 48870428 48870083 1.160000e-130 477.0
9 TraesCS6A01G098600 chr6D 85.945 434 41 11 1054 1469 49218417 49218848 3.260000e-121 446.0
10 TraesCS6A01G098600 chr6D 92.982 228 16 0 4369 4596 48859633 48859406 2.650000e-87 333.0
11 TraesCS6A01G098600 chr6D 96.175 183 7 0 1464 1646 49218929 49219111 2.690000e-77 300.0
12 TraesCS6A01G098600 chr6D 97.101 138 3 1 3763 3899 48865198 48865061 9.940000e-57 231.0
13 TraesCS6A01G098600 chr6D 97.345 113 3 0 3890 4002 48863450 48863338 4.690000e-45 193.0
14 TraesCS6A01G098600 chr6D 98.649 74 1 0 4014 4087 48863352 48863279 1.040000e-26 132.0
15 TraesCS6A01G098600 chr6D 96.875 32 1 0 3671 3702 58854753 58854784 2.000000e-03 54.7
16 TraesCS6A01G098600 chr6B 91.294 3331 188 58 362 3623 122289940 122293237 0.000000e+00 4451.0
17 TraesCS6A01G098600 chr6B 95.591 1905 75 5 1733 3628 121814343 121812439 0.000000e+00 3044.0
18 TraesCS6A01G098600 chr6B 89.532 363 17 11 1 356 122289624 122289972 1.520000e-119 440.0
19 TraesCS6A01G098600 chr6B 85.169 445 37 17 1054 1469 121815170 121814726 3.290000e-116 429.0
20 TraesCS6A01G098600 chr6B 95.628 183 8 0 1464 1646 121814651 121814469 1.250000e-75 294.0
21 TraesCS6A01G098600 chr6B 96.000 50 2 0 537 586 122290078 122290127 1.060000e-11 82.4
22 TraesCS6A01G098600 chr5B 93.361 482 29 3 3128 3607 162833187 162833667 0.000000e+00 710.0
23 TraesCS6A01G098600 chr2A 84.375 96 8 3 3631 3721 90037978 90038071 2.280000e-13 87.9
24 TraesCS6A01G098600 chr3A 82.353 85 8 2 3631 3708 93705167 93705251 2.970000e-07 67.6
25 TraesCS6A01G098600 chr4B 84.848 66 4 2 3633 3692 601776401 601776466 1.380000e-05 62.1
26 TraesCS6A01G098600 chr7A 100.000 29 0 0 4321 4349 719980764 719980736 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G098600 chr6A 65796793 65801388 4595 False 8488.000000 8488 100.000000 1 4596 1 chr6A.!!$F1 4595
1 TraesCS6A01G098600 chr6A 65681756 65684426 2670 True 1273.000000 3291 92.993667 1065 3607 3 chr6A.!!$R1 2542
2 TraesCS6A01G098600 chr6D 49218417 49221105 2688 False 1268.333333 3059 92.713000 1054 3607 3 chr6D.!!$F2 2553
3 TraesCS6A01G098600 chr6D 48859406 48870428 11022 True 1042.833333 4891 94.976333 1 4596 6 chr6D.!!$R1 4595
4 TraesCS6A01G098600 chr6B 122289624 122293237 3613 False 1657.800000 4451 92.275333 1 3623 3 chr6B.!!$F1 3622
5 TraesCS6A01G098600 chr6B 121812439 121815170 2731 True 1255.666667 3044 92.129333 1054 3628 3 chr6B.!!$R1 2574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 992 0.036022 AGCAGAGCCACCAAACTCTC 59.964 55.0 0.0 0.0 41.31 3.20 F
1446 1520 0.107508 AAGATGCTCCACATGGTCCG 60.108 55.0 0.0 0.0 39.84 4.79 F
2926 3152 0.991920 CCTTCCTAGAACCCAAGCCA 59.008 55.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2926 3152 0.842635 GGTCCTTCATCCATGGCTCT 59.157 55.000 6.96 0.0 0.00 4.09 R
3447 3675 6.258287 TCAAATTCAAATGTGCAAGAACAAGG 59.742 34.615 0.00 0.0 32.81 3.61 R
4125 7487 0.248289 AATCCCGTGTTCGTAGGTGG 59.752 55.000 0.00 0.0 35.01 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.681848 CAGTAGCCAGCTGAATTCCTTG 59.318 50.000 17.39 0.82 36.12 3.61
48 49 2.019984 GTAGCCAGCTGAATTCCTTGG 58.980 52.381 17.39 12.99 0.00 3.61
49 50 0.700564 AGCCAGCTGAATTCCTTGGA 59.299 50.000 17.39 0.00 0.00 3.53
50 51 1.076024 AGCCAGCTGAATTCCTTGGAA 59.924 47.619 17.39 4.43 0.00 3.53
51 52 2.105766 GCCAGCTGAATTCCTTGGAAT 58.894 47.619 17.39 8.94 0.00 3.01
52 53 2.100418 GCCAGCTGAATTCCTTGGAATC 59.900 50.000 17.39 9.26 0.00 2.52
53 54 3.629087 CCAGCTGAATTCCTTGGAATCT 58.371 45.455 17.39 5.62 0.00 2.40
75 77 7.919313 TCTACTAGGCGATTTACGTAATTTG 57.081 36.000 9.18 10.58 44.60 2.32
79 81 5.212589 AGGCGATTTACGTAATTTGACAC 57.787 39.130 20.30 10.56 44.60 3.67
88 90 2.721797 CGTAATTTGACACACGAGCAGC 60.722 50.000 0.00 0.00 36.53 5.25
111 113 1.197721 GTGAGAATTTGTCCGGCACTG 59.802 52.381 0.00 0.00 0.00 3.66
138 140 1.484240 AGAGAATAGACAGCCAGCCAC 59.516 52.381 0.00 0.00 0.00 5.01
140 142 2.695666 GAGAATAGACAGCCAGCCACTA 59.304 50.000 0.00 0.00 0.00 2.74
156 159 2.617308 CCACTAGCTCAATTGCTGATGG 59.383 50.000 0.00 4.43 43.87 3.51
208 211 2.477176 CCCGTCTGAGAGCGAGAGG 61.477 68.421 6.12 0.00 0.00 3.69
253 256 3.181178 CGCAGACAATATCGACACAGATG 59.819 47.826 0.00 0.00 32.39 2.90
261 264 2.524569 TCGACACAGATGCAGACAAA 57.475 45.000 0.00 0.00 0.00 2.83
262 265 2.407090 TCGACACAGATGCAGACAAAG 58.593 47.619 0.00 0.00 0.00 2.77
263 266 2.035832 TCGACACAGATGCAGACAAAGA 59.964 45.455 0.00 0.00 0.00 2.52
264 267 2.411069 CGACACAGATGCAGACAAAGAG 59.589 50.000 0.00 0.00 0.00 2.85
266 269 1.467734 CACAGATGCAGACAAAGAGCC 59.532 52.381 0.00 0.00 0.00 4.70
267 270 1.350351 ACAGATGCAGACAAAGAGCCT 59.650 47.619 0.00 0.00 0.00 4.58
323 326 2.550978 GTTCCATACATCCACTCCACG 58.449 52.381 0.00 0.00 0.00 4.94
343 346 2.417719 GCCATCCTATTCGTCCATGAC 58.582 52.381 0.00 0.00 0.00 3.06
356 360 8.687824 ATTCGTCCATGACAATAAAATTGTTC 57.312 30.769 6.72 2.23 31.96 3.18
357 361 6.616947 TCGTCCATGACAATAAAATTGTTCC 58.383 36.000 6.72 0.00 31.96 3.62
358 362 6.207614 TCGTCCATGACAATAAAATTGTTCCA 59.792 34.615 6.72 2.45 31.96 3.53
359 363 6.307800 CGTCCATGACAATAAAATTGTTCCAC 59.692 38.462 6.72 0.00 31.96 4.02
360 364 6.307800 GTCCATGACAATAAAATTGTTCCACG 59.692 38.462 6.72 0.00 31.96 4.94
361 365 5.062058 CCATGACAATAAAATTGTTCCACGC 59.938 40.000 6.72 0.00 31.96 5.34
362 366 4.551388 TGACAATAAAATTGTTCCACGCC 58.449 39.130 6.72 0.00 31.96 5.68
363 367 4.038042 TGACAATAAAATTGTTCCACGCCA 59.962 37.500 6.72 0.00 31.96 5.69
364 368 5.146010 ACAATAAAATTGTTCCACGCCAT 57.854 34.783 0.00 0.00 0.00 4.40
365 369 5.167845 ACAATAAAATTGTTCCACGCCATC 58.832 37.500 0.00 0.00 0.00 3.51
366 370 2.741759 AAAATTGTTCCACGCCATCC 57.258 45.000 0.00 0.00 0.00 3.51
367 371 1.923356 AAATTGTTCCACGCCATCCT 58.077 45.000 0.00 0.00 0.00 3.24
368 372 2.799126 AATTGTTCCACGCCATCCTA 57.201 45.000 0.00 0.00 0.00 2.94
369 373 3.297134 AATTGTTCCACGCCATCCTAT 57.703 42.857 0.00 0.00 0.00 2.57
370 374 2.799126 TTGTTCCACGCCATCCTATT 57.201 45.000 0.00 0.00 0.00 1.73
371 375 2.325583 TGTTCCACGCCATCCTATTC 57.674 50.000 0.00 0.00 0.00 1.75
372 376 1.217882 GTTCCACGCCATCCTATTCG 58.782 55.000 0.00 0.00 0.00 3.34
373 377 0.828022 TTCCACGCCATCCTATTCGT 59.172 50.000 0.00 0.00 35.35 3.85
374 378 0.387929 TCCACGCCATCCTATTCGTC 59.612 55.000 0.00 0.00 32.38 4.20
375 379 0.600255 CCACGCCATCCTATTCGTCC 60.600 60.000 0.00 0.00 32.38 4.79
376 380 0.104120 CACGCCATCCTATTCGTCCA 59.896 55.000 0.00 0.00 32.38 4.02
377 381 1.048601 ACGCCATCCTATTCGTCCAT 58.951 50.000 0.00 0.00 0.00 3.41
378 382 1.270305 ACGCCATCCTATTCGTCCATG 60.270 52.381 0.00 0.00 0.00 3.66
379 383 1.000843 CGCCATCCTATTCGTCCATGA 59.999 52.381 0.00 0.00 0.00 3.07
380 384 2.417719 GCCATCCTATTCGTCCATGAC 58.582 52.381 0.00 0.00 0.00 3.06
381 385 2.224281 GCCATCCTATTCGTCCATGACA 60.224 50.000 0.00 0.00 32.09 3.58
382 386 3.744214 GCCATCCTATTCGTCCATGACAA 60.744 47.826 0.00 0.00 32.09 3.18
383 387 4.645535 CCATCCTATTCGTCCATGACAAT 58.354 43.478 0.00 0.00 32.09 2.71
384 388 5.793817 CCATCCTATTCGTCCATGACAATA 58.206 41.667 0.00 0.00 32.09 1.90
385 389 6.230472 CCATCCTATTCGTCCATGACAATAA 58.770 40.000 0.00 0.00 32.09 1.40
386 390 6.710295 CCATCCTATTCGTCCATGACAATAAA 59.290 38.462 0.00 0.00 32.09 1.40
387 391 7.228507 CCATCCTATTCGTCCATGACAATAAAA 59.771 37.037 0.00 0.00 32.09 1.52
388 392 8.786898 CATCCTATTCGTCCATGACAATAAAAT 58.213 33.333 0.00 0.00 32.09 1.82
389 393 8.746052 TCCTATTCGTCCATGACAATAAAATT 57.254 30.769 0.00 0.00 32.09 1.82
390 394 8.620416 TCCTATTCGTCCATGACAATAAAATTG 58.380 33.333 0.00 0.00 32.09 2.32
391 395 8.405531 CCTATTCGTCCATGACAATAAAATTGT 58.594 33.333 5.01 5.01 34.97 2.71
392 396 9.787532 CTATTCGTCCATGACAATAAAATTGTT 57.212 29.630 6.72 0.00 31.96 2.83
404 408 8.568732 ACAATAAAATTGTTTACAAGTGGACG 57.431 30.769 1.50 0.00 39.47 4.79
442 446 3.005155 GCATTGCACTCTTCTGAAAAGGT 59.995 43.478 3.15 0.00 0.00 3.50
444 448 5.278463 GCATTGCACTCTTCTGAAAAGGTAA 60.278 40.000 3.15 0.00 0.00 2.85
451 455 6.150140 CACTCTTCTGAAAAGGTAATGGAAGG 59.850 42.308 0.00 0.00 32.34 3.46
460 464 1.393603 GTAATGGAAGGGCCTTGCTC 58.606 55.000 33.47 16.51 37.63 4.26
498 502 2.519541 TCTCGAGGGCAGGGATCG 60.520 66.667 13.56 0.00 37.79 3.69
535 539 7.781324 AGTATTGTTTCACTTTCCATGGAAT 57.219 32.000 27.53 11.49 33.79 3.01
590 596 4.645535 TGGGAAAGTTCTTCAGATCAGTG 58.354 43.478 0.00 0.00 0.00 3.66
626 632 6.238022 GCCGTACATACAGAATGAAAAGTACC 60.238 42.308 0.00 0.00 39.69 3.34
628 634 6.020121 CGTACATACAGAATGAAAAGTACCCG 60.020 42.308 0.00 0.00 39.69 5.28
699 707 8.597662 ATTTGATCCAGTTTTCATTGACAAAG 57.402 30.769 0.00 0.00 0.00 2.77
700 708 5.531634 TGATCCAGTTTTCATTGACAAAGC 58.468 37.500 0.00 0.00 0.00 3.51
724 732 6.795114 GCACTGAGAAATTTTCATGCAAAATG 59.205 34.615 11.53 6.46 42.86 2.32
758 766 9.730705 ATAATAATCATATGAGAACCAGTGGTG 57.269 33.333 17.56 0.02 35.34 4.17
759 767 5.441718 AATCATATGAGAACCAGTGGTGT 57.558 39.130 17.56 6.32 35.34 4.16
760 768 6.560003 AATCATATGAGAACCAGTGGTGTA 57.440 37.500 17.56 2.92 35.34 2.90
806 816 3.135712 AGGTCGGCACCACAATCATATAA 59.864 43.478 8.48 0.00 46.68 0.98
807 817 3.498397 GGTCGGCACCACAATCATATAAG 59.502 47.826 0.00 0.00 43.17 1.73
809 819 4.814234 GTCGGCACCACAATCATATAAGAA 59.186 41.667 0.00 0.00 0.00 2.52
810 820 4.814234 TCGGCACCACAATCATATAAGAAC 59.186 41.667 0.00 0.00 0.00 3.01
811 821 4.024048 CGGCACCACAATCATATAAGAACC 60.024 45.833 0.00 0.00 0.00 3.62
812 822 4.024048 GGCACCACAATCATATAAGAACCG 60.024 45.833 0.00 0.00 0.00 4.44
813 823 4.024048 GCACCACAATCATATAAGAACCGG 60.024 45.833 0.00 0.00 0.00 5.28
814 824 5.123227 CACCACAATCATATAAGAACCGGT 58.877 41.667 0.00 0.00 0.00 5.28
815 825 5.588648 CACCACAATCATATAAGAACCGGTT 59.411 40.000 22.50 22.50 0.00 4.44
816 826 6.094881 CACCACAATCATATAAGAACCGGTTT 59.905 38.462 23.22 9.26 0.00 3.27
817 827 7.281324 CACCACAATCATATAAGAACCGGTTTA 59.719 37.037 23.22 11.48 0.00 2.01
845 855 7.865706 ATTGATAAGGTCCAAATATATCGCC 57.134 36.000 0.00 0.00 0.00 5.54
859 869 2.600470 ATCGCCCGGTAAAACGATAA 57.400 45.000 0.00 0.00 42.96 1.75
863 873 9.878273 TATATCGCCCGGTAAAACGATAACTCG 62.878 44.444 18.28 0.00 46.77 4.18
905 915 2.199291 ATAAGAGCGCATTTGCAAGC 57.801 45.000 11.47 0.00 42.21 4.01
911 921 1.418342 GCGCATTTGCAAGCCAGATG 61.418 55.000 0.30 1.14 42.21 2.90
912 922 0.171679 CGCATTTGCAAGCCAGATGA 59.828 50.000 11.37 0.00 38.07 2.92
913 923 1.797713 CGCATTTGCAAGCCAGATGAG 60.798 52.381 11.37 5.08 38.07 2.90
914 924 1.475280 GCATTTGCAAGCCAGATGAGA 59.525 47.619 11.37 0.00 38.07 3.27
915 925 2.479730 GCATTTGCAAGCCAGATGAGAG 60.480 50.000 11.37 0.00 38.07 3.20
917 927 1.022982 TTGCAAGCCAGATGAGAGCG 61.023 55.000 0.00 0.00 0.00 5.03
918 928 1.153489 GCAAGCCAGATGAGAGCGA 60.153 57.895 0.00 0.00 0.00 4.93
919 929 0.742281 GCAAGCCAGATGAGAGCGAA 60.742 55.000 0.00 0.00 0.00 4.70
922 932 0.175302 AGCCAGATGAGAGCGAACTG 59.825 55.000 0.00 0.00 0.00 3.16
923 933 0.174389 GCCAGATGAGAGCGAACTGA 59.826 55.000 0.00 0.00 0.00 3.41
925 935 2.538437 CCAGATGAGAGCGAACTGAAG 58.462 52.381 0.00 0.00 0.00 3.02
926 936 1.925847 CAGATGAGAGCGAACTGAAGC 59.074 52.381 0.00 0.00 0.00 3.86
927 937 1.134848 AGATGAGAGCGAACTGAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
928 938 0.610174 ATGAGAGCGAACTGAAGCCA 59.390 50.000 0.00 0.00 0.00 4.75
930 940 1.202639 TGAGAGCGAACTGAAGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
934 944 3.437049 AGAGCGAACTGAAGCCAAAATAC 59.563 43.478 0.00 0.00 0.00 1.89
935 945 3.146066 AGCGAACTGAAGCCAAAATACA 58.854 40.909 0.00 0.00 0.00 2.29
936 946 3.758554 AGCGAACTGAAGCCAAAATACAT 59.241 39.130 0.00 0.00 0.00 2.29
937 947 4.098416 GCGAACTGAAGCCAAAATACATC 58.902 43.478 0.00 0.00 0.00 3.06
938 948 4.379394 GCGAACTGAAGCCAAAATACATCA 60.379 41.667 0.00 0.00 0.00 3.07
939 949 5.088739 CGAACTGAAGCCAAAATACATCAC 58.911 41.667 0.00 0.00 0.00 3.06
942 952 4.702131 ACTGAAGCCAAAATACATCACCTC 59.298 41.667 0.00 0.00 0.00 3.85
943 953 4.922206 TGAAGCCAAAATACATCACCTCT 58.078 39.130 0.00 0.00 0.00 3.69
945 955 3.891049 AGCCAAAATACATCACCTCTCC 58.109 45.455 0.00 0.00 0.00 3.71
946 956 2.952310 GCCAAAATACATCACCTCTCCC 59.048 50.000 0.00 0.00 0.00 4.30
948 958 4.796606 CCAAAATACATCACCTCTCCCAT 58.203 43.478 0.00 0.00 0.00 4.00
949 959 4.823989 CCAAAATACATCACCTCTCCCATC 59.176 45.833 0.00 0.00 0.00 3.51
950 960 4.713792 AAATACATCACCTCTCCCATCC 57.286 45.455 0.00 0.00 0.00 3.51
951 961 3.645053 ATACATCACCTCTCCCATCCT 57.355 47.619 0.00 0.00 0.00 3.24
952 962 2.277008 ACATCACCTCTCCCATCCTT 57.723 50.000 0.00 0.00 0.00 3.36
953 963 2.122768 ACATCACCTCTCCCATCCTTC 58.877 52.381 0.00 0.00 0.00 3.46
954 964 2.121948 CATCACCTCTCCCATCCTTCA 58.878 52.381 0.00 0.00 0.00 3.02
955 965 1.871418 TCACCTCTCCCATCCTTCAG 58.129 55.000 0.00 0.00 0.00 3.02
958 968 1.912043 ACCTCTCCCATCCTTCAGTTG 59.088 52.381 0.00 0.00 0.00 3.16
975 985 0.473755 TTGAAGAAGCAGAGCCACCA 59.526 50.000 0.00 0.00 0.00 4.17
977 987 1.133823 TGAAGAAGCAGAGCCACCAAA 60.134 47.619 0.00 0.00 0.00 3.28
982 992 0.036022 AGCAGAGCCACCAAACTCTC 59.964 55.000 0.00 0.00 41.31 3.20
990 1000 2.023673 CCACCAAACTCTCTTGTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
991 1001 2.033801 CCACCAAACTCTCTTGTTGCAG 59.966 50.000 0.00 0.00 0.00 4.41
1015 1025 1.144936 GGCATGGAGGAAGAGACGG 59.855 63.158 0.00 0.00 0.00 4.79
1026 1036 4.509737 GAGACGGCTACCACGGCC 62.510 72.222 0.00 0.00 41.14 6.13
1042 1064 2.736682 GCCGGACGGAAACACGATG 61.737 63.158 15.99 0.00 37.50 3.84
1044 1066 1.349259 CCGGACGGAAACACGATGAC 61.349 60.000 4.40 0.00 37.50 3.06
1062 1090 3.210528 GGCGTCGACTCGGAGGAT 61.211 66.667 14.70 0.00 0.00 3.24
1092 1120 2.719979 GGCAATGGCATCAGCTCG 59.280 61.111 19.87 0.20 43.71 5.03
1236 1297 1.587547 GATCCTCGGATGCCAGTTTC 58.412 55.000 2.58 0.00 34.60 2.78
1446 1520 0.107508 AAGATGCTCCACATGGTCCG 60.108 55.000 0.00 0.00 39.84 4.79
1502 1664 1.549170 TCTACTTCTCCGGCTTCAACC 59.451 52.381 0.00 0.00 0.00 3.77
1646 1808 1.662629 CGCAGCTCATTGTCAAGGTAG 59.337 52.381 0.00 0.00 0.00 3.18
1647 1809 1.399791 GCAGCTCATTGTCAAGGTAGC 59.600 52.381 11.33 11.33 0.00 3.58
1648 1810 2.938756 GCAGCTCATTGTCAAGGTAGCT 60.939 50.000 14.38 14.38 40.79 3.32
1652 1837 4.829492 AGCTCATTGTCAAGGTAGCTTTTT 59.171 37.500 3.96 0.00 36.98 1.94
1677 1880 3.600388 TCTTTCTTCTTCCGCCTGAATC 58.400 45.455 0.00 0.00 31.06 2.52
1678 1881 3.261897 TCTTTCTTCTTCCGCCTGAATCT 59.738 43.478 0.00 0.00 31.06 2.40
1679 1882 2.680312 TCTTCTTCCGCCTGAATCTG 57.320 50.000 0.00 0.00 31.06 2.90
1680 1883 2.179427 TCTTCTTCCGCCTGAATCTGA 58.821 47.619 0.00 0.00 31.06 3.27
1681 1884 2.567169 TCTTCTTCCGCCTGAATCTGAA 59.433 45.455 0.00 0.00 31.06 3.02
1682 1885 2.386661 TCTTCCGCCTGAATCTGAAC 57.613 50.000 0.00 0.00 31.06 3.18
1721 1947 3.688185 CGTGATGGATGGATGATGGATTC 59.312 47.826 0.00 0.00 0.00 2.52
1723 1949 4.700692 GTGATGGATGGATGATGGATTCTG 59.299 45.833 0.00 0.00 0.00 3.02
1726 1952 3.717913 TGGATGGATGATGGATTCTGTCA 59.282 43.478 0.00 0.00 0.00 3.58
1731 1957 3.681897 GGATGATGGATTCTGTCATACGC 59.318 47.826 4.92 0.00 33.03 4.42
1735 1961 1.221414 GGATTCTGTCATACGCTGGC 58.779 55.000 0.00 0.00 0.00 4.85
1881 2107 2.670934 CTGGAAGTGGCTGCGCTT 60.671 61.111 9.73 7.62 0.00 4.68
1924 2150 2.982130 GACCTCATCACCTGCGGT 59.018 61.111 0.00 0.00 45.74 5.68
2283 2509 2.798148 ATCAACGACAAGGGCCGGAC 62.798 60.000 5.05 0.00 0.00 4.79
2902 3128 1.225704 CATCCTGGACCTCAAGGGC 59.774 63.158 0.00 0.00 44.61 5.19
2926 3152 0.991920 CCTTCCTAGAACCCAAGCCA 59.008 55.000 0.00 0.00 0.00 4.75
3420 3648 2.701780 CCGAGGTGAGTCCAGTCGG 61.702 68.421 9.09 9.09 41.15 4.79
3449 3677 1.813513 CTTTCCAAGCATCGACACCT 58.186 50.000 0.00 0.00 0.00 4.00
3466 3700 3.446873 ACACCTTGTTCTTGCACATTTGA 59.553 39.130 0.00 0.00 0.00 2.69
3475 3709 6.203145 TGTTCTTGCACATTTGAATTTGATGG 59.797 34.615 0.00 0.00 0.00 3.51
3532 3766 0.755686 GGATCTTGACGAGGCAGGAT 59.244 55.000 3.04 3.04 37.31 3.24
3665 3917 5.302823 TCTCAGTTGATTGAGACTTGTCTCA 59.697 40.000 24.41 24.41 46.42 3.27
3691 3951 7.394641 AGTCCATGCTATATTCGTGAGATCTTA 59.605 37.037 0.00 0.00 41.60 2.10
3710 3970 6.486253 TCTTATGTGAAGATCTGTGCAAAC 57.514 37.500 0.00 0.00 0.00 2.93
3775 5516 3.733024 TGACTAAAATTTAGCCGCACG 57.267 42.857 12.28 0.00 0.00 5.34
3907 7269 7.561356 TCTTCCTTCTTTTTCTTTCTGGTTCAT 59.439 33.333 0.00 0.00 0.00 2.57
3923 7285 5.426504 TGGTTCATGATTTGTTTGCTTTGT 58.573 33.333 0.00 0.00 0.00 2.83
3997 7359 9.797473 GCAATAAGCAGTTCTTAAAAATGTTTC 57.203 29.630 0.00 0.00 44.79 2.78
4000 7362 7.468922 AAGCAGTTCTTAAAAATGTTTCAGC 57.531 32.000 0.00 0.00 32.10 4.26
4001 7363 6.572519 AGCAGTTCTTAAAAATGTTTCAGCA 58.427 32.000 0.00 0.00 0.00 4.41
4002 7364 7.212274 AGCAGTTCTTAAAAATGTTTCAGCAT 58.788 30.769 0.00 0.00 0.00 3.79
4003 7365 7.383300 AGCAGTTCTTAAAAATGTTTCAGCATC 59.617 33.333 0.00 0.00 0.00 3.91
4004 7366 7.383300 GCAGTTCTTAAAAATGTTTCAGCATCT 59.617 33.333 0.00 0.00 0.00 2.90
4005 7367 8.909671 CAGTTCTTAAAAATGTTTCAGCATCTC 58.090 33.333 0.00 0.00 0.00 2.75
4006 7368 8.084684 AGTTCTTAAAAATGTTTCAGCATCTCC 58.915 33.333 0.00 0.00 0.00 3.71
4007 7369 6.611381 TCTTAAAAATGTTTCAGCATCTCCG 58.389 36.000 0.00 0.00 0.00 4.63
4008 7370 2.927553 AAATGTTTCAGCATCTCCGC 57.072 45.000 0.00 0.00 0.00 5.54
4009 7371 1.825090 AATGTTTCAGCATCTCCGCA 58.175 45.000 0.00 0.00 0.00 5.69
4010 7372 1.825090 ATGTTTCAGCATCTCCGCAA 58.175 45.000 0.00 0.00 0.00 4.85
4011 7373 1.603456 TGTTTCAGCATCTCCGCAAA 58.397 45.000 0.00 0.00 0.00 3.68
4012 7374 1.952990 TGTTTCAGCATCTCCGCAAAA 59.047 42.857 0.00 0.00 0.00 2.44
4013 7375 2.360483 TGTTTCAGCATCTCCGCAAAAA 59.640 40.909 0.00 0.00 0.00 1.94
4054 7416 1.270893 GGAAAGCGAGAAGTCCCAACT 60.271 52.381 0.00 0.00 37.32 3.16
4087 7449 7.479980 TGAGTTTTTCGATTGTGTCATCTTTT 58.520 30.769 0.00 0.00 0.00 2.27
4088 7450 7.973388 TGAGTTTTTCGATTGTGTCATCTTTTT 59.027 29.630 0.00 0.00 0.00 1.94
4089 7451 8.118893 AGTTTTTCGATTGTGTCATCTTTTTG 57.881 30.769 0.00 0.00 0.00 2.44
4091 7453 4.159377 TCGATTGTGTCATCTTTTTGGC 57.841 40.909 0.00 0.00 0.00 4.52
4092 7454 2.910482 CGATTGTGTCATCTTTTTGGCG 59.090 45.455 0.00 0.00 0.00 5.69
4093 7455 2.132740 TTGTGTCATCTTTTTGGCGC 57.867 45.000 0.00 0.00 32.43 6.53
4095 7457 0.598065 GTGTCATCTTTTTGGCGCCT 59.402 50.000 29.70 1.01 0.00 5.52
4096 7458 0.881118 TGTCATCTTTTTGGCGCCTC 59.119 50.000 29.70 1.40 0.00 4.70
4097 7459 1.168714 GTCATCTTTTTGGCGCCTCT 58.831 50.000 29.70 0.84 0.00 3.69
4099 7461 0.883833 CATCTTTTTGGCGCCTCTGT 59.116 50.000 29.70 4.12 0.00 3.41
4100 7462 1.270550 CATCTTTTTGGCGCCTCTGTT 59.729 47.619 29.70 3.38 0.00 3.16
4101 7463 0.667993 TCTTTTTGGCGCCTCTGTTG 59.332 50.000 29.70 13.32 0.00 3.33
4102 7464 0.318955 CTTTTTGGCGCCTCTGTTGG 60.319 55.000 29.70 7.95 0.00 3.77
4103 7465 0.753479 TTTTTGGCGCCTCTGTTGGA 60.753 50.000 29.70 0.07 0.00 3.53
4105 7467 0.539438 TTTGGCGCCTCTGTTGGATT 60.539 50.000 29.70 0.00 0.00 3.01
4106 7468 0.539438 TTGGCGCCTCTGTTGGATTT 60.539 50.000 29.70 0.00 0.00 2.17
4107 7469 0.960364 TGGCGCCTCTGTTGGATTTC 60.960 55.000 29.70 0.00 0.00 2.17
4110 7472 1.474077 GCGCCTCTGTTGGATTTCATT 59.526 47.619 0.00 0.00 0.00 2.57
4111 7473 2.682856 GCGCCTCTGTTGGATTTCATTA 59.317 45.455 0.00 0.00 0.00 1.90
4112 7474 3.316308 GCGCCTCTGTTGGATTTCATTAT 59.684 43.478 0.00 0.00 0.00 1.28
4113 7475 4.555511 GCGCCTCTGTTGGATTTCATTATC 60.556 45.833 0.00 0.00 0.00 1.75
4115 7477 5.277683 CGCCTCTGTTGGATTTCATTATCAG 60.278 44.000 0.00 0.00 0.00 2.90
4116 7478 5.506982 GCCTCTGTTGGATTTCATTATCAGC 60.507 44.000 0.00 0.00 0.00 4.26
4117 7479 5.591472 CCTCTGTTGGATTTCATTATCAGCA 59.409 40.000 0.00 0.00 0.00 4.41
4118 7480 6.264744 CCTCTGTTGGATTTCATTATCAGCAT 59.735 38.462 0.00 0.00 0.00 3.79
4120 7482 7.485810 TCTGTTGGATTTCATTATCAGCATTG 58.514 34.615 0.00 0.00 0.00 2.82
4122 7484 7.259882 TGTTGGATTTCATTATCAGCATTGAC 58.740 34.615 0.00 0.00 35.83 3.18
4125 7487 7.654568 TGGATTTCATTATCAGCATTGACATC 58.345 34.615 0.00 0.00 35.83 3.06
4126 7488 7.088905 GGATTTCATTATCAGCATTGACATCC 58.911 38.462 0.00 0.00 37.92 3.51
4127 7489 7.255695 GGATTTCATTATCAGCATTGACATCCA 60.256 37.037 10.53 0.00 41.70 3.41
4129 7491 4.823442 TCATTATCAGCATTGACATCCACC 59.177 41.667 0.00 0.00 35.83 4.61
4133 7495 1.935873 CAGCATTGACATCCACCTACG 59.064 52.381 0.00 0.00 0.00 3.51
4134 7496 1.831106 AGCATTGACATCCACCTACGA 59.169 47.619 0.00 0.00 0.00 3.43
4135 7497 2.236146 AGCATTGACATCCACCTACGAA 59.764 45.455 0.00 0.00 0.00 3.85
4136 7498 2.351726 GCATTGACATCCACCTACGAAC 59.648 50.000 0.00 0.00 0.00 3.95
4138 7500 2.736144 TGACATCCACCTACGAACAC 57.264 50.000 0.00 0.00 0.00 3.32
4139 7501 1.068125 TGACATCCACCTACGAACACG 60.068 52.381 0.00 0.00 0.00 4.49
4140 7502 0.245539 ACATCCACCTACGAACACGG 59.754 55.000 0.00 0.00 0.00 4.94
4141 7503 0.459585 CATCCACCTACGAACACGGG 60.460 60.000 0.00 0.00 0.00 5.28
4142 7504 0.612732 ATCCACCTACGAACACGGGA 60.613 55.000 0.00 0.00 0.00 5.14
4145 7507 1.355971 CACCTACGAACACGGGATTG 58.644 55.000 0.00 0.00 0.00 2.67
4146 7508 0.971386 ACCTACGAACACGGGATTGT 59.029 50.000 0.00 0.00 0.00 2.71
4147 7509 1.337447 ACCTACGAACACGGGATTGTG 60.337 52.381 0.00 0.00 45.41 3.33
4148 7510 0.719465 CTACGAACACGGGATTGTGC 59.281 55.000 0.00 0.00 43.74 4.57
4149 7511 2.474266 CGAACACGGGATTGTGCG 59.526 61.111 0.00 0.00 42.05 5.34
4150 7512 2.314647 CGAACACGGGATTGTGCGT 61.315 57.895 0.00 0.00 42.69 5.24
4151 7513 1.206578 GAACACGGGATTGTGCGTG 59.793 57.895 0.00 0.00 43.74 5.34
4152 7514 2.780149 GAACACGGGATTGTGCGTGC 62.780 60.000 0.00 0.00 43.74 5.34
4153 7515 3.353029 CACGGGATTGTGCGTGCA 61.353 61.111 0.00 0.00 32.31 4.57
4154 7516 2.359850 ACGGGATTGTGCGTGCAT 60.360 55.556 0.00 0.00 0.00 3.96
4155 7517 1.078778 ACGGGATTGTGCGTGCATA 60.079 52.632 0.00 0.00 0.00 3.14
4172 7534 5.814314 TGCATACGCACAATTGTTTAAAC 57.186 34.783 8.77 11.54 45.36 2.01
4173 7535 5.524284 TGCATACGCACAATTGTTTAAACT 58.476 33.333 18.72 0.00 45.36 2.66
4174 7536 5.400782 TGCATACGCACAATTGTTTAAACTG 59.599 36.000 18.72 11.43 45.36 3.16
4175 7537 5.665217 GCATACGCACAATTGTTTAAACTGC 60.665 40.000 18.72 17.06 38.36 4.40
4176 7538 3.775202 ACGCACAATTGTTTAAACTGCA 58.225 36.364 21.99 8.48 0.00 4.41
4178 7540 5.524284 ACGCACAATTGTTTAAACTGCATA 58.476 33.333 21.99 1.69 0.00 3.14
4181 7543 6.242829 GCACAATTGTTTAAACTGCATATGC 58.757 36.000 21.09 21.09 42.50 3.14
4182 7544 6.091169 GCACAATTGTTTAAACTGCATATGCT 59.909 34.615 27.13 10.62 42.66 3.79
4183 7545 7.449827 CACAATTGTTTAAACTGCATATGCTG 58.550 34.615 27.29 27.29 44.21 4.41
4184 7546 6.591062 ACAATTGTTTAAACTGCATATGCTGG 59.409 34.615 30.60 23.16 43.15 4.85
4185 7547 5.973899 TTGTTTAAACTGCATATGCTGGA 57.026 34.783 30.60 17.08 43.15 3.86
4186 7548 5.973899 TGTTTAAACTGCATATGCTGGAA 57.026 34.783 30.60 20.78 43.15 3.53
4187 7549 6.338214 TGTTTAAACTGCATATGCTGGAAA 57.662 33.333 30.60 24.01 43.15 3.13
4188 7550 6.389091 TGTTTAAACTGCATATGCTGGAAAG 58.611 36.000 30.60 20.76 43.15 2.62
4189 7551 6.208402 TGTTTAAACTGCATATGCTGGAAAGA 59.792 34.615 30.60 22.80 43.15 2.52
4190 7552 6.832520 TTAAACTGCATATGCTGGAAAGAA 57.167 33.333 30.60 17.49 43.15 2.52
4191 7553 4.708726 AACTGCATATGCTGGAAAGAAC 57.291 40.909 30.60 1.74 43.15 3.01
4192 7554 3.689347 ACTGCATATGCTGGAAAGAACA 58.311 40.909 30.60 7.96 43.15 3.18
4193 7555 4.275810 ACTGCATATGCTGGAAAGAACAT 58.724 39.130 30.60 10.22 43.15 2.71
4195 7557 5.163581 ACTGCATATGCTGGAAAGAACATTC 60.164 40.000 30.60 0.10 43.15 2.67
4196 7558 4.705991 TGCATATGCTGGAAAGAACATTCA 59.294 37.500 27.13 0.00 42.66 2.57
4197 7559 5.185442 TGCATATGCTGGAAAGAACATTCAA 59.815 36.000 27.13 0.00 42.66 2.69
4198 7560 6.101332 GCATATGCTGGAAAGAACATTCAAA 58.899 36.000 20.64 0.00 38.21 2.69
4199 7561 6.591062 GCATATGCTGGAAAGAACATTCAAAA 59.409 34.615 20.64 0.00 38.21 2.44
4200 7562 7.118101 GCATATGCTGGAAAGAACATTCAAAAA 59.882 33.333 20.64 0.00 38.21 1.94
4201 7563 9.158233 CATATGCTGGAAAGAACATTCAAAAAT 57.842 29.630 0.00 0.00 0.00 1.82
4203 7565 8.767478 ATGCTGGAAAGAACATTCAAAAATAG 57.233 30.769 0.00 0.00 0.00 1.73
4204 7566 7.725251 TGCTGGAAAGAACATTCAAAAATAGT 58.275 30.769 0.00 0.00 0.00 2.12
4206 7568 9.045223 GCTGGAAAGAACATTCAAAAATAGTTT 57.955 29.630 0.00 0.00 0.00 2.66
4217 7579 9.132521 CATTCAAAAATAGTTTTCGATCTTGCT 57.867 29.630 0.00 0.00 34.64 3.91
4219 7581 8.506140 TCAAAAATAGTTTTCGATCTTGCTTG 57.494 30.769 0.00 0.00 34.64 4.01
4222 7584 5.803020 ATAGTTTTCGATCTTGCTTGGAC 57.197 39.130 0.00 0.00 0.00 4.02
4224 7586 2.552315 GTTTTCGATCTTGCTTGGACCA 59.448 45.455 0.00 0.00 0.00 4.02
4225 7587 2.559698 TTCGATCTTGCTTGGACCAA 57.440 45.000 6.76 6.76 0.00 3.67
4227 7589 0.443869 CGATCTTGCTTGGACCAACG 59.556 55.000 1.69 0.00 0.00 4.10
4228 7590 0.804989 GATCTTGCTTGGACCAACGG 59.195 55.000 1.69 0.00 0.00 4.44
4229 7591 0.400213 ATCTTGCTTGGACCAACGGA 59.600 50.000 1.69 0.00 0.00 4.69
4230 7592 0.250295 TCTTGCTTGGACCAACGGAG 60.250 55.000 1.69 1.46 0.00 4.63
4232 7594 0.817634 TTGCTTGGACCAACGGAGTG 60.818 55.000 1.69 0.00 45.00 3.51
4233 7595 1.227853 GCTTGGACCAACGGAGTGT 60.228 57.895 1.69 0.00 45.00 3.55
4234 7596 1.507141 GCTTGGACCAACGGAGTGTG 61.507 60.000 1.69 0.00 45.00 3.82
4239 7601 2.513895 CCAACGGAGTGTGGGGTT 59.486 61.111 0.00 0.00 45.00 4.11
4240 7602 1.896660 CCAACGGAGTGTGGGGTTG 60.897 63.158 0.00 0.00 45.00 3.77
4241 7603 1.896660 CAACGGAGTGTGGGGTTGG 60.897 63.158 0.00 0.00 45.00 3.77
4242 7604 2.380285 AACGGAGTGTGGGGTTGGT 61.380 57.895 0.00 0.00 45.00 3.67
4243 7605 1.928714 AACGGAGTGTGGGGTTGGTT 61.929 55.000 0.00 0.00 45.00 3.67
4244 7606 1.599797 CGGAGTGTGGGGTTGGTTC 60.600 63.158 0.00 0.00 0.00 3.62
4245 7607 1.228459 GGAGTGTGGGGTTGGTTCC 60.228 63.158 0.00 0.00 0.00 3.62
4254 7616 2.139323 GGGTTGGTTCCCACCTATTC 57.861 55.000 11.11 0.00 46.30 1.75
4255 7617 1.341679 GGGTTGGTTCCCACCTATTCC 60.342 57.143 11.11 0.00 46.30 3.01
4256 7618 1.341679 GGTTGGTTCCCACCTATTCCC 60.342 57.143 5.04 0.00 44.61 3.97
4257 7619 1.639108 GTTGGTTCCCACCTATTCCCT 59.361 52.381 0.00 0.00 44.61 4.20
4258 7620 2.848071 GTTGGTTCCCACCTATTCCCTA 59.152 50.000 0.00 0.00 44.61 3.53
4259 7621 3.448277 TGGTTCCCACCTATTCCCTAT 57.552 47.619 0.00 0.00 44.61 2.57
4261 7623 4.123745 TGGTTCCCACCTATTCCCTATTT 58.876 43.478 0.00 0.00 44.61 1.40
4262 7624 4.167307 TGGTTCCCACCTATTCCCTATTTC 59.833 45.833 0.00 0.00 44.61 2.17
4264 7626 3.332968 TCCCACCTATTCCCTATTTCCC 58.667 50.000 0.00 0.00 0.00 3.97
4265 7627 3.049778 TCCCACCTATTCCCTATTTCCCT 60.050 47.826 0.00 0.00 0.00 4.20
4267 7629 4.917656 CCCACCTATTCCCTATTTCCCTTA 59.082 45.833 0.00 0.00 0.00 2.69
4268 7630 5.374453 CCCACCTATTCCCTATTTCCCTTAA 59.626 44.000 0.00 0.00 0.00 1.85
4269 7631 6.046762 CCCACCTATTCCCTATTTCCCTTAAT 59.953 42.308 0.00 0.00 0.00 1.40
4271 7633 7.670140 CCACCTATTCCCTATTTCCCTTAATTC 59.330 40.741 0.00 0.00 0.00 2.17
4272 7634 7.670140 CACCTATTCCCTATTTCCCTTAATTCC 59.330 40.741 0.00 0.00 0.00 3.01
4273 7635 7.182760 CCTATTCCCTATTTCCCTTAATTCCC 58.817 42.308 0.00 0.00 0.00 3.97
4275 7637 5.663158 TCCCTATTTCCCTTAATTCCCAG 57.337 43.478 0.00 0.00 0.00 4.45
4276 7638 5.301979 TCCCTATTTCCCTTAATTCCCAGA 58.698 41.667 0.00 0.00 0.00 3.86
4277 7639 5.923061 TCCCTATTTCCCTTAATTCCCAGAT 59.077 40.000 0.00 0.00 0.00 2.90
4279 7641 7.239773 TCCCTATTTCCCTTAATTCCCAGATAG 59.760 40.741 0.00 0.00 0.00 2.08
4281 7643 6.865651 ATTTCCCTTAATTCCCAGATAGGT 57.134 37.500 0.00 0.00 34.66 3.08
4282 7644 5.646692 TTCCCTTAATTCCCAGATAGGTG 57.353 43.478 0.00 0.00 34.66 4.00
4285 7647 3.138283 CCTTAATTCCCAGATAGGTGGCA 59.862 47.826 0.00 0.00 36.11 4.92
4286 7648 4.202609 CCTTAATTCCCAGATAGGTGGCAT 60.203 45.833 0.00 0.00 36.11 4.40
4287 7649 5.014123 CCTTAATTCCCAGATAGGTGGCATA 59.986 44.000 0.00 0.00 36.11 3.14
4288 7650 6.297243 CCTTAATTCCCAGATAGGTGGCATAT 60.297 42.308 0.00 0.00 36.11 1.78
4289 7651 7.092444 CCTTAATTCCCAGATAGGTGGCATATA 60.092 40.741 0.00 0.00 36.11 0.86
4291 7653 6.718593 ATTCCCAGATAGGTGGCATATAAA 57.281 37.500 0.00 0.00 36.11 1.40
4292 7654 5.499004 TCCCAGATAGGTGGCATATAAAC 57.501 43.478 0.00 0.00 36.11 2.01
4293 7655 4.910913 TCCCAGATAGGTGGCATATAAACA 59.089 41.667 0.00 0.00 36.11 2.83
4294 7656 5.371176 TCCCAGATAGGTGGCATATAAACAA 59.629 40.000 0.00 0.00 36.11 2.83
4296 7658 6.299141 CCAGATAGGTGGCATATAAACAAGT 58.701 40.000 0.00 0.00 0.00 3.16
4297 7659 6.772716 CCAGATAGGTGGCATATAAACAAGTT 59.227 38.462 0.00 0.00 0.00 2.66
4299 7661 9.337396 CAGATAGGTGGCATATAAACAAGTTAA 57.663 33.333 0.00 0.00 0.00 2.01
4300 7662 9.914834 AGATAGGTGGCATATAAACAAGTTAAA 57.085 29.630 0.00 0.00 0.00 1.52
4358 7720 7.765695 AGAAGAAAATATCAAGGACTGCAAA 57.234 32.000 0.00 0.00 0.00 3.68
4359 7721 8.181904 AGAAGAAAATATCAAGGACTGCAAAA 57.818 30.769 0.00 0.00 0.00 2.44
4360 7722 8.084684 AGAAGAAAATATCAAGGACTGCAAAAC 58.915 33.333 0.00 0.00 0.00 2.43
4362 7724 7.899973 AGAAAATATCAAGGACTGCAAAACAT 58.100 30.769 0.00 0.00 0.00 2.71
4363 7725 7.816031 AGAAAATATCAAGGACTGCAAAACATG 59.184 33.333 0.00 0.00 0.00 3.21
4364 7726 6.594788 AATATCAAGGACTGCAAAACATGT 57.405 33.333 0.00 0.00 0.00 3.21
4365 7727 7.701539 AATATCAAGGACTGCAAAACATGTA 57.298 32.000 0.00 0.00 0.00 2.29
4366 7728 5.633830 ATCAAGGACTGCAAAACATGTAG 57.366 39.130 0.00 0.00 46.19 2.74
4367 7729 4.713553 TCAAGGACTGCAAAACATGTAGA 58.286 39.130 0.00 0.00 43.78 2.59
4410 11136 0.850100 AGAATGTGGTGTTGGTCCCA 59.150 50.000 0.00 0.00 0.00 4.37
4456 11182 1.398390 GTGGCATTACTCCAAGCTTCG 59.602 52.381 0.00 0.00 35.01 3.79
4481 11207 0.251354 AGCGAGCTGTTGATGATGGT 59.749 50.000 0.00 0.00 0.00 3.55
4482 11208 0.376152 GCGAGCTGTTGATGATGGTG 59.624 55.000 0.00 0.00 0.00 4.17
4484 11210 1.456296 GAGCTGTTGATGATGGTGCA 58.544 50.000 0.00 0.00 0.00 4.57
4498 11224 1.442857 GTGCAGTGGTCGTCTCTCG 60.443 63.158 0.00 0.00 41.41 4.04
4511 11237 3.005155 TCGTCTCTCGTCGACTATATGGA 59.995 47.826 14.70 1.04 40.80 3.41
4513 11239 4.309099 GTCTCTCGTCGACTATATGGAGT 58.691 47.826 14.70 0.00 0.00 3.85
4567 11293 0.863144 GCGTTGGTTTTAGTCTGCGA 59.137 50.000 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.004320 CCGTTGGATTCCACGGACA 60.004 57.895 28.22 5.58 44.62 4.02
47 48 5.118642 ACGTAAATCGCCTAGTAGATTCC 57.881 43.478 9.47 4.64 44.19 3.01
48 49 8.739649 AATTACGTAAATCGCCTAGTAGATTC 57.260 34.615 12.81 0.55 44.19 2.52
49 50 8.975439 CAAATTACGTAAATCGCCTAGTAGATT 58.025 33.333 12.81 4.62 44.19 2.40
50 51 8.355169 TCAAATTACGTAAATCGCCTAGTAGAT 58.645 33.333 12.81 0.00 44.19 1.98
51 52 7.645340 GTCAAATTACGTAAATCGCCTAGTAGA 59.355 37.037 12.81 0.00 44.19 2.59
52 53 7.433131 TGTCAAATTACGTAAATCGCCTAGTAG 59.567 37.037 12.81 0.00 44.19 2.57
53 54 7.220683 GTGTCAAATTACGTAAATCGCCTAGTA 59.779 37.037 12.81 0.00 44.19 1.82
75 77 0.241213 TCACTAGCTGCTCGTGTGTC 59.759 55.000 26.93 0.00 30.67 3.67
79 81 2.575694 ATTCTCACTAGCTGCTCGTG 57.424 50.000 23.74 23.74 0.00 4.35
88 90 2.673368 GTGCCGGACAAATTCTCACTAG 59.327 50.000 5.05 0.00 0.00 2.57
111 113 2.035832 GGCTGTCTATTCTCTGCCTCTC 59.964 54.545 0.00 0.00 42.58 3.20
156 159 8.947115 GGTTAATTATTACTAGATGGTCCATGC 58.053 37.037 9.76 1.08 0.00 4.06
166 169 7.040961 GGGCGCATTTGGTTAATTATTACTAGA 60.041 37.037 10.83 0.00 0.00 2.43
169 172 5.506649 CGGGCGCATTTGGTTAATTATTACT 60.507 40.000 10.83 0.00 0.00 2.24
170 173 4.677832 CGGGCGCATTTGGTTAATTATTAC 59.322 41.667 10.83 0.00 0.00 1.89
171 174 4.338682 ACGGGCGCATTTGGTTAATTATTA 59.661 37.500 10.83 0.00 0.00 0.98
208 211 1.599576 GTTCAGAGGACAGAGGGGC 59.400 63.158 0.00 0.00 0.00 5.80
219 222 0.315251 TGTCTGCGACAGGTTCAGAG 59.685 55.000 7.20 0.00 37.67 3.35
220 223 0.750249 TTGTCTGCGACAGGTTCAGA 59.250 50.000 10.44 0.00 43.69 3.27
253 256 1.020437 GGCATAGGCTCTTTGTCTGC 58.980 55.000 0.00 0.00 40.87 4.26
261 264 2.450476 CCAACAAAAGGCATAGGCTCT 58.550 47.619 0.00 0.00 37.50 4.09
262 265 2.947448 CCAACAAAAGGCATAGGCTC 57.053 50.000 0.00 0.00 37.50 4.70
323 326 2.224281 TGTCATGGACGAATAGGATGGC 60.224 50.000 0.00 0.00 34.95 4.40
343 346 4.566360 GGATGGCGTGGAACAATTTTATTG 59.434 41.667 0.00 0.00 44.16 1.90
356 360 0.600255 GGACGAATAGGATGGCGTGG 60.600 60.000 0.00 0.00 37.07 4.94
357 361 0.104120 TGGACGAATAGGATGGCGTG 59.896 55.000 0.00 0.00 37.07 5.34
358 362 1.048601 ATGGACGAATAGGATGGCGT 58.951 50.000 0.00 0.00 39.99 5.68
359 363 1.000843 TCATGGACGAATAGGATGGCG 59.999 52.381 0.00 0.00 0.00 5.69
360 364 2.224281 TGTCATGGACGAATAGGATGGC 60.224 50.000 0.00 0.00 34.95 4.40
361 365 3.751479 TGTCATGGACGAATAGGATGG 57.249 47.619 0.00 0.00 34.95 3.51
362 366 7.728847 TTTATTGTCATGGACGAATAGGATG 57.271 36.000 0.00 0.00 34.95 3.51
363 367 8.924511 ATTTTATTGTCATGGACGAATAGGAT 57.075 30.769 0.00 0.00 34.95 3.24
364 368 8.620416 CAATTTTATTGTCATGGACGAATAGGA 58.380 33.333 0.00 0.00 34.95 2.94
365 369 8.405531 ACAATTTTATTGTCATGGACGAATAGG 58.594 33.333 0.00 0.00 34.95 2.57
366 370 9.787532 AACAATTTTATTGTCATGGACGAATAG 57.212 29.630 5.59 0.00 34.95 1.73
369 373 9.400638 GTAAACAATTTTATTGTCATGGACGAA 57.599 29.630 5.59 0.00 30.74 3.85
370 374 8.568794 TGTAAACAATTTTATTGTCATGGACGA 58.431 29.630 5.59 0.00 30.74 4.20
371 375 8.735303 TGTAAACAATTTTATTGTCATGGACG 57.265 30.769 5.59 0.00 30.74 4.79
377 381 9.522804 GTCCACTTGTAAACAATTTTATTGTCA 57.477 29.630 5.59 0.00 35.02 3.58
378 382 8.687301 CGTCCACTTGTAAACAATTTTATTGTC 58.313 33.333 5.59 0.00 35.02 3.18
379 383 7.168469 GCGTCCACTTGTAAACAATTTTATTGT 59.832 33.333 0.00 0.00 35.02 2.71
380 384 7.358848 GGCGTCCACTTGTAAACAATTTTATTG 60.359 37.037 0.00 0.00 35.02 1.90
381 385 6.643360 GGCGTCCACTTGTAAACAATTTTATT 59.357 34.615 0.00 0.00 35.02 1.40
382 386 6.153756 GGCGTCCACTTGTAAACAATTTTAT 58.846 36.000 0.00 0.00 35.02 1.40
383 387 5.521544 GGCGTCCACTTGTAAACAATTTTA 58.478 37.500 0.00 0.00 35.02 1.52
384 388 4.364860 GGCGTCCACTTGTAAACAATTTT 58.635 39.130 0.00 0.00 35.02 1.82
385 389 3.549221 CGGCGTCCACTTGTAAACAATTT 60.549 43.478 0.00 0.00 35.02 1.82
386 390 2.031508 CGGCGTCCACTTGTAAACAATT 60.032 45.455 0.00 0.00 35.02 2.32
387 391 1.533731 CGGCGTCCACTTGTAAACAAT 59.466 47.619 0.00 0.00 35.02 2.71
388 392 0.938713 CGGCGTCCACTTGTAAACAA 59.061 50.000 0.00 0.00 0.00 2.83
389 393 0.104487 TCGGCGTCCACTTGTAAACA 59.896 50.000 6.85 0.00 0.00 2.83
390 394 1.219646 TTCGGCGTCCACTTGTAAAC 58.780 50.000 6.85 0.00 0.00 2.01
391 395 1.801771 CATTCGGCGTCCACTTGTAAA 59.198 47.619 6.85 0.00 0.00 2.01
392 396 1.001068 TCATTCGGCGTCCACTTGTAA 59.999 47.619 6.85 0.00 0.00 2.41
393 397 0.604073 TCATTCGGCGTCCACTTGTA 59.396 50.000 6.85 0.00 0.00 2.41
394 398 0.670546 CTCATTCGGCGTCCACTTGT 60.671 55.000 6.85 0.00 0.00 3.16
404 408 1.651240 ATGCACACAGCTCATTCGGC 61.651 55.000 0.00 0.00 45.94 5.54
434 438 2.381961 AGGCCCTTCCATTACCTTTTCA 59.618 45.455 0.00 0.00 37.29 2.69
435 439 3.101643 AGGCCCTTCCATTACCTTTTC 57.898 47.619 0.00 0.00 37.29 2.29
442 446 0.107214 CGAGCAAGGCCCTTCCATTA 60.107 55.000 0.00 0.00 37.29 1.90
444 448 2.273449 CGAGCAAGGCCCTTCCAT 59.727 61.111 0.00 0.00 37.29 3.41
460 464 2.713967 CCATGCCTTTTGGGGAGCG 61.714 63.158 0.00 0.00 39.29 5.03
487 491 1.153147 GAAGAACCGATCCCTGCCC 60.153 63.158 0.00 0.00 0.00 5.36
498 502 9.220767 AGTGAAACAATACTAATCTGAAGAACC 57.779 33.333 0.00 0.00 41.43 3.62
555 559 7.043961 AGAACTTTCCCATGAAAAGAGAAAC 57.956 36.000 20.65 10.52 39.88 2.78
561 565 6.639632 TCTGAAGAACTTTCCCATGAAAAG 57.360 37.500 15.11 15.11 39.88 2.27
566 570 5.123502 CACTGATCTGAAGAACTTTCCCATG 59.876 44.000 6.60 0.00 0.00 3.66
567 571 5.222007 ACACTGATCTGAAGAACTTTCCCAT 60.222 40.000 6.60 0.00 0.00 4.00
568 572 4.103153 ACACTGATCTGAAGAACTTTCCCA 59.897 41.667 6.60 0.00 0.00 4.37
569 573 4.453819 CACACTGATCTGAAGAACTTTCCC 59.546 45.833 6.60 0.00 0.00 3.97
570 574 5.300752 TCACACTGATCTGAAGAACTTTCC 58.699 41.667 6.60 0.00 0.00 3.13
571 575 7.296660 CAATCACACTGATCTGAAGAACTTTC 58.703 38.462 6.60 0.00 35.76 2.62
590 596 0.461339 ATGTACGGCCGACCAATCAC 60.461 55.000 35.90 16.56 34.57 3.06
699 707 5.910637 TTTGCATGAAAATTTCTCAGTGC 57.089 34.783 7.29 11.59 32.58 4.40
700 708 8.078959 TCATTTTGCATGAAAATTTCTCAGTG 57.921 30.769 7.29 2.75 41.50 3.66
745 753 4.002906 TCAATGTACACCACTGGTTCTC 57.997 45.455 0.00 0.00 31.02 2.87
755 763 8.691661 ATATTTGGACCTTATCAATGTACACC 57.308 34.615 0.00 0.00 0.00 4.16
760 768 9.799106 CCTCTTATATTTGGACCTTATCAATGT 57.201 33.333 0.00 0.00 0.00 2.71
806 816 9.117183 GACCTTATCAATTTATAAACCGGTTCT 57.883 33.333 22.53 13.79 0.00 3.01
807 817 8.347771 GGACCTTATCAATTTATAAACCGGTTC 58.652 37.037 22.53 0.49 0.00 3.62
809 819 7.348033 TGGACCTTATCAATTTATAAACCGGT 58.652 34.615 0.00 0.00 0.00 5.28
810 820 7.811117 TGGACCTTATCAATTTATAAACCGG 57.189 36.000 0.00 0.00 0.00 5.28
842 852 1.589779 GAGTTATCGTTTTACCGGGCG 59.410 52.381 6.32 2.12 0.00 6.13
859 869 6.845669 AATGGGAGAAATCTCTCGTTCGAGT 61.846 44.000 19.26 2.54 46.73 4.18
874 884 5.738619 TGCGCTCTTATATAATGGGAGAA 57.261 39.130 9.73 0.00 0.00 2.87
875 885 5.939764 ATGCGCTCTTATATAATGGGAGA 57.060 39.130 9.73 0.00 0.00 3.71
905 915 2.538437 CTTCAGTTCGCTCTCATCTGG 58.462 52.381 0.00 0.00 0.00 3.86
911 921 1.512926 TTTGGCTTCAGTTCGCTCTC 58.487 50.000 0.00 0.00 0.00 3.20
912 922 1.967319 TTTTGGCTTCAGTTCGCTCT 58.033 45.000 0.00 0.00 0.00 4.09
913 923 2.997485 ATTTTGGCTTCAGTTCGCTC 57.003 45.000 0.00 0.00 0.00 5.03
914 924 3.146066 TGTATTTTGGCTTCAGTTCGCT 58.854 40.909 0.00 0.00 0.00 4.93
915 925 3.552604 TGTATTTTGGCTTCAGTTCGC 57.447 42.857 0.00 0.00 0.00 4.70
917 927 5.183904 AGGTGATGTATTTTGGCTTCAGTTC 59.816 40.000 0.00 0.00 0.00 3.01
918 928 5.079643 AGGTGATGTATTTTGGCTTCAGTT 58.920 37.500 0.00 0.00 0.00 3.16
919 929 4.666512 AGGTGATGTATTTTGGCTTCAGT 58.333 39.130 0.00 0.00 0.00 3.41
922 932 4.336713 GGAGAGGTGATGTATTTTGGCTTC 59.663 45.833 0.00 0.00 0.00 3.86
923 933 4.273318 GGAGAGGTGATGTATTTTGGCTT 58.727 43.478 0.00 0.00 0.00 4.35
925 935 2.952310 GGGAGAGGTGATGTATTTTGGC 59.048 50.000 0.00 0.00 0.00 4.52
926 936 4.235079 TGGGAGAGGTGATGTATTTTGG 57.765 45.455 0.00 0.00 0.00 3.28
927 937 4.823989 GGATGGGAGAGGTGATGTATTTTG 59.176 45.833 0.00 0.00 0.00 2.44
928 938 4.728860 AGGATGGGAGAGGTGATGTATTTT 59.271 41.667 0.00 0.00 0.00 1.82
930 940 3.946824 AGGATGGGAGAGGTGATGTATT 58.053 45.455 0.00 0.00 0.00 1.89
934 944 2.104451 CTGAAGGATGGGAGAGGTGATG 59.896 54.545 0.00 0.00 0.00 3.07
935 945 2.293452 ACTGAAGGATGGGAGAGGTGAT 60.293 50.000 0.00 0.00 0.00 3.06
936 946 1.079490 ACTGAAGGATGGGAGAGGTGA 59.921 52.381 0.00 0.00 0.00 4.02
937 947 1.577736 ACTGAAGGATGGGAGAGGTG 58.422 55.000 0.00 0.00 0.00 4.00
938 948 1.912043 CAACTGAAGGATGGGAGAGGT 59.088 52.381 0.00 0.00 0.00 3.85
939 949 2.191400 TCAACTGAAGGATGGGAGAGG 58.809 52.381 0.00 0.00 0.00 3.69
951 961 2.158769 TGGCTCTGCTTCTTCAACTGAA 60.159 45.455 0.00 0.00 0.00 3.02
952 962 1.417517 TGGCTCTGCTTCTTCAACTGA 59.582 47.619 0.00 0.00 0.00 3.41
953 963 1.534595 GTGGCTCTGCTTCTTCAACTG 59.465 52.381 0.00 0.00 0.00 3.16
954 964 1.544314 GGTGGCTCTGCTTCTTCAACT 60.544 52.381 0.00 0.00 0.00 3.16
955 965 0.877743 GGTGGCTCTGCTTCTTCAAC 59.122 55.000 0.00 0.00 0.00 3.18
958 968 1.268079 GTTTGGTGGCTCTGCTTCTTC 59.732 52.381 0.00 0.00 0.00 2.87
964 974 0.036022 AGAGAGTTTGGTGGCTCTGC 59.964 55.000 0.00 0.00 41.63 4.26
965 975 2.149578 CAAGAGAGTTTGGTGGCTCTG 58.850 52.381 0.00 0.00 41.63 3.35
975 985 2.092429 TGTCCCTGCAACAAGAGAGTTT 60.092 45.455 0.00 0.00 0.00 2.66
977 987 1.071385 CTGTCCCTGCAACAAGAGAGT 59.929 52.381 0.00 0.00 0.00 3.24
982 992 0.896940 ATGCCTGTCCCTGCAACAAG 60.897 55.000 0.00 0.00 41.50 3.16
990 1000 1.229951 TTCCTCCATGCCTGTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
991 1001 1.225704 CTTCCTCCATGCCTGTCCC 59.774 63.158 0.00 0.00 0.00 4.46
1026 1036 1.670971 CGTCATCGTGTTTCCGTCCG 61.671 60.000 0.00 0.00 0.00 4.79
1032 1054 1.414897 GACGCCGTCATCGTGTTTC 59.585 57.895 13.23 0.00 40.59 2.78
1042 1064 4.517703 CTCCGAGTCGACGCCGTC 62.518 72.222 24.11 7.29 37.05 4.79
1051 1073 0.825840 CTCCCTGGATCCTCCGAGTC 60.826 65.000 14.23 0.00 40.17 3.36
1078 1106 1.822613 CCAGCGAGCTGATGCCATT 60.823 57.895 24.93 0.00 46.30 3.16
1080 1108 3.381333 CTCCAGCGAGCTGATGCCA 62.381 63.158 24.93 4.06 46.30 4.92
1206 1234 3.795638 GAGGATCGGGCGTTTGAC 58.204 61.111 0.00 0.00 0.00 3.18
1236 1297 2.029288 ACGCCATGCTCAGTTCACG 61.029 57.895 0.00 0.00 0.00 4.35
1446 1520 3.358076 CTCTTGTCCCGGACGAGCC 62.358 68.421 25.24 0.00 42.18 4.70
1502 1664 3.470567 GACGAACGTGAGCGCCAG 61.471 66.667 2.29 0.00 42.83 4.85
1646 1808 6.089551 GGCGGAAGAAGAAAGAAATAAAAAGC 59.910 38.462 0.00 0.00 0.00 3.51
1647 1809 7.327032 CAGGCGGAAGAAGAAAGAAATAAAAAG 59.673 37.037 0.00 0.00 0.00 2.27
1648 1810 7.013846 TCAGGCGGAAGAAGAAAGAAATAAAAA 59.986 33.333 0.00 0.00 0.00 1.94
1652 1837 5.160607 TCAGGCGGAAGAAGAAAGAAATA 57.839 39.130 0.00 0.00 0.00 1.40
1682 1885 1.225104 CGTCACGTCACGCATTTCG 60.225 57.895 0.00 0.00 45.38 3.46
1721 1947 0.105593 ATCTGGCCAGCGTATGACAG 59.894 55.000 28.91 0.73 35.96 3.51
1723 1949 0.104855 TGATCTGGCCAGCGTATGAC 59.895 55.000 28.91 13.01 0.00 3.06
1726 1952 1.552337 CCTATGATCTGGCCAGCGTAT 59.448 52.381 28.91 21.26 0.00 3.06
1735 1961 2.701107 CAGATGCTGCCTATGATCTGG 58.299 52.381 15.40 0.00 38.68 3.86
1881 2107 1.066093 TCGCGGTCGTTGTTGAAGA 59.934 52.632 6.13 0.00 36.96 2.87
2328 2554 3.702048 GGAGCACGTACAGCCCCA 61.702 66.667 3.37 0.00 29.15 4.96
2497 2723 1.361668 CCGTGGAGAAGATGTTGCGG 61.362 60.000 0.00 0.00 0.00 5.69
2902 3128 1.966845 TGGGTTCTAGGAAGGGAAGG 58.033 55.000 0.00 0.00 0.00 3.46
2926 3152 0.842635 GGTCCTTCATCCATGGCTCT 59.157 55.000 6.96 0.00 0.00 4.09
3447 3675 6.258287 TCAAATTCAAATGTGCAAGAACAAGG 59.742 34.615 0.00 0.00 32.81 3.61
3449 3677 7.254829 CCATCAAATTCAAATGTGCAAGAACAA 60.255 33.333 0.00 0.00 32.81 2.83
3466 3700 5.648960 GCCAAAATCAATCCACCATCAAATT 59.351 36.000 0.00 0.00 0.00 1.82
3475 3709 1.336702 TGCACGCCAAAATCAATCCAC 60.337 47.619 0.00 0.00 0.00 4.02
3665 3917 5.714333 AGATCTCACGAATATAGCATGGACT 59.286 40.000 0.00 0.00 0.00 3.85
3747 4007 7.335924 TGCGGCTAAATTTTAGTCAACTAAGAT 59.664 33.333 18.20 2.12 39.36 2.40
3771 5512 3.007635 AGTAATAACTCCCAAAGCGTGC 58.992 45.455 0.00 0.00 0.00 5.34
3775 5516 5.472137 TGTTGACAGTAATAACTCCCAAAGC 59.528 40.000 0.00 0.00 31.97 3.51
3781 5522 7.390718 AGGAAACATGTTGACAGTAATAACTCC 59.609 37.037 12.82 10.14 31.97 3.85
3900 7262 5.426504 ACAAAGCAAACAAATCATGAACCA 58.573 33.333 0.00 0.00 0.00 3.67
3907 7269 2.941720 GGGCAACAAAGCAAACAAATCA 59.058 40.909 0.00 0.00 39.74 2.57
3923 7285 1.135546 CGCGTGATTTTACATGGGCAA 60.136 47.619 0.00 0.00 34.16 4.52
3988 7350 2.557924 TGCGGAGATGCTGAAACATTTT 59.442 40.909 0.00 0.00 35.36 1.82
3989 7351 2.161855 TGCGGAGATGCTGAAACATTT 58.838 42.857 0.00 0.00 35.36 2.32
3990 7352 1.825090 TGCGGAGATGCTGAAACATT 58.175 45.000 0.00 0.00 35.36 2.71
3991 7353 1.825090 TTGCGGAGATGCTGAAACAT 58.175 45.000 0.00 0.00 35.36 2.71
3992 7354 1.603456 TTTGCGGAGATGCTGAAACA 58.397 45.000 0.00 0.00 35.36 2.83
3993 7355 2.704725 TTTTGCGGAGATGCTGAAAC 57.295 45.000 0.00 0.00 35.36 2.78
4013 7375 7.862512 TTCCAATTCTTGCTGAAACATTTTT 57.137 28.000 0.00 0.00 38.29 1.94
4054 7416 8.918961 ACACAATCGAAAAACTCATACAAAAA 57.081 26.923 0.00 0.00 0.00 1.94
4087 7449 0.539438 AAATCCAACAGAGGCGCCAA 60.539 50.000 31.54 3.13 0.00 4.52
4088 7450 0.960364 GAAATCCAACAGAGGCGCCA 60.960 55.000 31.54 4.96 0.00 5.69
4089 7451 0.960364 TGAAATCCAACAGAGGCGCC 60.960 55.000 21.89 21.89 0.00 6.53
4091 7453 4.576053 TGATAATGAAATCCAACAGAGGCG 59.424 41.667 0.00 0.00 0.00 5.52
4092 7454 5.506982 GCTGATAATGAAATCCAACAGAGGC 60.507 44.000 0.00 0.00 0.00 4.70
4093 7455 5.591472 TGCTGATAATGAAATCCAACAGAGG 59.409 40.000 0.00 0.00 0.00 3.69
4095 7457 7.339976 TCAATGCTGATAATGAAATCCAACAGA 59.660 33.333 0.00 0.00 0.00 3.41
4096 7458 7.434307 GTCAATGCTGATAATGAAATCCAACAG 59.566 37.037 0.00 0.00 33.05 3.16
4097 7459 7.093858 TGTCAATGCTGATAATGAAATCCAACA 60.094 33.333 0.00 0.00 33.05 3.33
4099 7461 7.407393 TGTCAATGCTGATAATGAAATCCAA 57.593 32.000 0.00 0.00 33.05 3.53
4100 7462 7.591421 ATGTCAATGCTGATAATGAAATCCA 57.409 32.000 0.00 0.00 33.05 3.41
4101 7463 7.088905 GGATGTCAATGCTGATAATGAAATCC 58.911 38.462 7.80 7.80 44.96 3.01
4102 7464 7.594015 GTGGATGTCAATGCTGATAATGAAATC 59.406 37.037 0.00 0.00 36.31 2.17
4103 7465 7.431249 GTGGATGTCAATGCTGATAATGAAAT 58.569 34.615 0.00 0.00 33.05 2.17
4105 7467 5.300034 GGTGGATGTCAATGCTGATAATGAA 59.700 40.000 0.00 0.00 33.05 2.57
4106 7468 4.823442 GGTGGATGTCAATGCTGATAATGA 59.177 41.667 0.00 0.00 33.05 2.57
4107 7469 4.825634 AGGTGGATGTCAATGCTGATAATG 59.174 41.667 0.00 0.00 33.05 1.90
4110 7472 4.501400 CGTAGGTGGATGTCAATGCTGATA 60.501 45.833 0.00 0.00 33.05 2.15
4111 7473 3.742327 CGTAGGTGGATGTCAATGCTGAT 60.742 47.826 0.00 0.00 33.05 2.90
4112 7474 2.418609 CGTAGGTGGATGTCAATGCTGA 60.419 50.000 0.00 0.00 0.00 4.26
4113 7475 1.935873 CGTAGGTGGATGTCAATGCTG 59.064 52.381 0.00 0.00 0.00 4.41
4115 7477 2.309528 TCGTAGGTGGATGTCAATGC 57.690 50.000 0.00 0.00 0.00 3.56
4116 7478 3.370978 GTGTTCGTAGGTGGATGTCAATG 59.629 47.826 0.00 0.00 0.00 2.82
4117 7479 3.596214 GTGTTCGTAGGTGGATGTCAAT 58.404 45.455 0.00 0.00 0.00 2.57
4118 7480 2.608506 CGTGTTCGTAGGTGGATGTCAA 60.609 50.000 0.00 0.00 0.00 3.18
4120 7482 1.625616 CGTGTTCGTAGGTGGATGTC 58.374 55.000 0.00 0.00 0.00 3.06
4122 7484 0.459585 CCCGTGTTCGTAGGTGGATG 60.460 60.000 0.00 0.00 35.01 3.51
4125 7487 0.248289 AATCCCGTGTTCGTAGGTGG 59.752 55.000 0.00 0.00 35.01 4.61
4126 7488 1.337447 ACAATCCCGTGTTCGTAGGTG 60.337 52.381 0.00 0.00 35.01 4.00
4127 7489 0.971386 ACAATCCCGTGTTCGTAGGT 59.029 50.000 0.00 0.00 35.01 3.08
4129 7491 0.719465 GCACAATCCCGTGTTCGTAG 59.281 55.000 0.00 0.00 39.19 3.51
4133 7495 1.206578 CACGCACAATCCCGTGTTC 59.793 57.895 5.13 0.00 46.90 3.18
4134 7496 3.339731 CACGCACAATCCCGTGTT 58.660 55.556 5.13 0.00 46.90 3.32
4138 7500 1.351707 GTATGCACGCACAATCCCG 59.648 57.895 0.00 0.00 0.00 5.14
4139 7501 1.351707 CGTATGCACGCACAATCCC 59.648 57.895 0.00 0.00 42.05 3.85
4140 7502 4.974468 CGTATGCACGCACAATCC 57.026 55.556 0.00 0.00 42.05 3.01
4151 7513 5.665217 GCAGTTTAAACAATTGTGCGTATGC 60.665 40.000 20.06 14.16 43.20 3.14
4152 7514 5.400782 TGCAGTTTAAACAATTGTGCGTATG 59.599 36.000 20.06 8.47 31.99 2.39
4153 7515 5.524284 TGCAGTTTAAACAATTGTGCGTAT 58.476 33.333 20.06 0.00 31.99 3.06
4154 7516 4.921547 TGCAGTTTAAACAATTGTGCGTA 58.078 34.783 20.06 2.40 31.99 4.42
4155 7517 3.775202 TGCAGTTTAAACAATTGTGCGT 58.225 36.364 20.06 3.41 31.99 5.24
4157 7519 6.091169 AGCATATGCAGTTTAAACAATTGTGC 59.909 34.615 28.62 18.81 45.16 4.57
4158 7520 7.412129 CCAGCATATGCAGTTTAAACAATTGTG 60.412 37.037 28.62 12.07 45.16 3.33
4159 7521 6.591062 CCAGCATATGCAGTTTAAACAATTGT 59.409 34.615 28.62 4.92 45.16 2.71
4160 7522 6.812656 TCCAGCATATGCAGTTTAAACAATTG 59.187 34.615 28.62 13.08 45.16 2.32
4161 7523 6.934056 TCCAGCATATGCAGTTTAAACAATT 58.066 32.000 28.62 0.81 45.16 2.32
4162 7524 6.528537 TCCAGCATATGCAGTTTAAACAAT 57.471 33.333 28.62 12.38 45.16 2.71
4164 7526 5.973899 TTCCAGCATATGCAGTTTAAACA 57.026 34.783 28.62 0.19 45.16 2.83
4165 7527 6.620678 TCTTTCCAGCATATGCAGTTTAAAC 58.379 36.000 28.62 10.47 45.16 2.01
4166 7528 6.832520 TCTTTCCAGCATATGCAGTTTAAA 57.167 33.333 28.62 18.10 45.16 1.52
4167 7529 6.208402 TGTTCTTTCCAGCATATGCAGTTTAA 59.792 34.615 28.62 14.34 45.16 1.52
4168 7530 5.709631 TGTTCTTTCCAGCATATGCAGTTTA 59.290 36.000 28.62 10.48 45.16 2.01
4171 7533 3.689347 TGTTCTTTCCAGCATATGCAGT 58.311 40.909 28.62 7.07 45.16 4.40
4172 7534 4.913335 ATGTTCTTTCCAGCATATGCAG 57.087 40.909 28.62 20.89 45.16 4.41
4173 7535 4.705991 TGAATGTTCTTTCCAGCATATGCA 59.294 37.500 28.62 6.28 45.16 3.96
4174 7536 5.252969 TGAATGTTCTTTCCAGCATATGC 57.747 39.130 20.36 20.36 42.49 3.14
4175 7537 8.537049 TTTTTGAATGTTCTTTCCAGCATATG 57.463 30.769 0.00 0.00 0.00 1.78
4178 7540 8.370182 ACTATTTTTGAATGTTCTTTCCAGCAT 58.630 29.630 0.00 0.00 0.00 3.79
4190 7552 8.915654 GCAAGATCGAAAACTATTTTTGAATGT 58.084 29.630 7.81 0.00 44.00 2.71
4191 7553 9.132521 AGCAAGATCGAAAACTATTTTTGAATG 57.867 29.630 7.81 8.48 44.00 2.67
4192 7554 9.696917 AAGCAAGATCGAAAACTATTTTTGAAT 57.303 25.926 7.81 0.00 44.00 2.57
4193 7555 8.967218 CAAGCAAGATCGAAAACTATTTTTGAA 58.033 29.630 7.81 0.00 44.00 2.69
4195 7557 7.594758 TCCAAGCAAGATCGAAAACTATTTTTG 59.405 33.333 0.00 0.00 34.94 2.44
4196 7558 7.595130 GTCCAAGCAAGATCGAAAACTATTTTT 59.405 33.333 0.00 0.00 37.65 1.94
4197 7559 7.084486 GTCCAAGCAAGATCGAAAACTATTTT 58.916 34.615 0.00 0.00 35.12 1.82
4198 7560 6.349363 GGTCCAAGCAAGATCGAAAACTATTT 60.349 38.462 0.00 0.00 0.00 1.40
4199 7561 5.123979 GGTCCAAGCAAGATCGAAAACTATT 59.876 40.000 0.00 0.00 0.00 1.73
4200 7562 4.636206 GGTCCAAGCAAGATCGAAAACTAT 59.364 41.667 0.00 0.00 0.00 2.12
4201 7563 4.000988 GGTCCAAGCAAGATCGAAAACTA 58.999 43.478 0.00 0.00 0.00 2.24
4202 7564 2.814336 GGTCCAAGCAAGATCGAAAACT 59.186 45.455 0.00 0.00 0.00 2.66
4203 7565 2.552315 TGGTCCAAGCAAGATCGAAAAC 59.448 45.455 0.00 0.00 0.00 2.43
4204 7566 2.857483 TGGTCCAAGCAAGATCGAAAA 58.143 42.857 0.00 0.00 0.00 2.29
4206 7568 2.151202 GTTGGTCCAAGCAAGATCGAA 58.849 47.619 3.96 0.00 36.14 3.71
4207 7569 1.808411 GTTGGTCCAAGCAAGATCGA 58.192 50.000 3.96 0.00 36.14 3.59
4208 7570 0.443869 CGTTGGTCCAAGCAAGATCG 59.556 55.000 3.96 0.00 36.14 3.69
4209 7571 0.804989 CCGTTGGTCCAAGCAAGATC 59.195 55.000 3.96 0.00 36.14 2.75
4210 7572 0.400213 TCCGTTGGTCCAAGCAAGAT 59.600 50.000 3.96 0.00 36.14 2.40
4211 7573 0.250295 CTCCGTTGGTCCAAGCAAGA 60.250 55.000 3.96 0.00 36.14 3.02
4212 7574 0.535102 ACTCCGTTGGTCCAAGCAAG 60.535 55.000 3.96 5.12 36.14 4.01
4213 7575 0.817634 CACTCCGTTGGTCCAAGCAA 60.818 55.000 3.96 0.00 32.60 3.91
4214 7576 1.227823 CACTCCGTTGGTCCAAGCA 60.228 57.895 3.96 0.00 0.00 3.91
4217 7579 1.147376 CCACACTCCGTTGGTCCAA 59.853 57.895 0.00 0.00 0.00 3.53
4219 7581 2.032071 CCCACACTCCGTTGGTCC 59.968 66.667 0.00 0.00 0.00 4.46
4222 7584 1.896660 CAACCCCACACTCCGTTGG 60.897 63.158 0.00 0.00 33.54 3.77
4224 7586 1.928714 AACCAACCCCACACTCCGTT 61.929 55.000 0.00 0.00 0.00 4.44
4225 7587 2.333701 GAACCAACCCCACACTCCGT 62.334 60.000 0.00 0.00 0.00 4.69
4227 7589 1.228459 GGAACCAACCCCACACTCC 60.228 63.158 0.00 0.00 0.00 3.85
4228 7590 4.494515 GGAACCAACCCCACACTC 57.505 61.111 0.00 0.00 0.00 3.51
4241 7603 4.447325 GGGAAATAGGGAATAGGTGGGAAC 60.447 50.000 0.00 0.00 0.00 3.62
4242 7604 3.725267 GGGAAATAGGGAATAGGTGGGAA 59.275 47.826 0.00 0.00 0.00 3.97
4243 7605 3.049778 AGGGAAATAGGGAATAGGTGGGA 60.050 47.826 0.00 0.00 0.00 4.37
4244 7606 3.336676 AGGGAAATAGGGAATAGGTGGG 58.663 50.000 0.00 0.00 0.00 4.61
4245 7607 6.524545 TTAAGGGAAATAGGGAATAGGTGG 57.475 41.667 0.00 0.00 0.00 4.61
4247 7609 7.202383 GGGAATTAAGGGAAATAGGGAATAGGT 60.202 40.741 0.00 0.00 0.00 3.08
4249 7611 7.765622 TGGGAATTAAGGGAAATAGGGAATAG 58.234 38.462 0.00 0.00 0.00 1.73
4250 7612 7.578557 TCTGGGAATTAAGGGAAATAGGGAATA 59.421 37.037 0.00 0.00 0.00 1.75
4252 7614 5.739105 TCTGGGAATTAAGGGAAATAGGGAA 59.261 40.000 0.00 0.00 0.00 3.97
4254 7616 5.663158 TCTGGGAATTAAGGGAAATAGGG 57.337 43.478 0.00 0.00 0.00 3.53
4255 7617 7.018650 ACCTATCTGGGAATTAAGGGAAATAGG 59.981 40.741 0.00 0.00 41.11 2.57
4256 7618 7.885399 CACCTATCTGGGAATTAAGGGAAATAG 59.115 40.741 0.00 0.00 41.11 1.73
4257 7619 7.202279 CCACCTATCTGGGAATTAAGGGAAATA 60.202 40.741 0.00 0.00 41.11 1.40
4258 7620 6.412024 CCACCTATCTGGGAATTAAGGGAAAT 60.412 42.308 0.00 0.00 41.11 2.17
4259 7621 5.103686 CCACCTATCTGGGAATTAAGGGAAA 60.104 44.000 0.00 0.00 41.11 3.13
4261 7623 3.980698 CCACCTATCTGGGAATTAAGGGA 59.019 47.826 0.00 0.00 41.11 4.20
4262 7624 3.498661 GCCACCTATCTGGGAATTAAGGG 60.499 52.174 0.00 0.00 41.11 3.95
4264 7626 4.437682 TGCCACCTATCTGGGAATTAAG 57.562 45.455 0.00 0.00 41.11 1.85
4265 7627 6.718593 ATATGCCACCTATCTGGGAATTAA 57.281 37.500 0.00 0.00 41.11 1.40
4267 7629 6.718593 TTATATGCCACCTATCTGGGAATT 57.281 37.500 0.00 0.00 41.11 2.17
4268 7630 6.045459 TGTTTATATGCCACCTATCTGGGAAT 59.955 38.462 0.00 0.00 41.11 3.01
4269 7631 5.371176 TGTTTATATGCCACCTATCTGGGAA 59.629 40.000 0.00 0.00 41.11 3.97
4271 7633 5.241403 TGTTTATATGCCACCTATCTGGG 57.759 43.478 0.00 0.00 41.11 4.45
4272 7634 6.299141 ACTTGTTTATATGCCACCTATCTGG 58.701 40.000 0.00 0.00 42.93 3.86
4273 7635 7.807977 AACTTGTTTATATGCCACCTATCTG 57.192 36.000 0.00 0.00 0.00 2.90
4332 7694 9.466497 TTTGCAGTCCTTGATATTTTCTTCTAT 57.534 29.630 0.00 0.00 0.00 1.98
4333 7695 8.862325 TTTGCAGTCCTTGATATTTTCTTCTA 57.138 30.769 0.00 0.00 0.00 2.10
4336 7698 7.725251 TGTTTTGCAGTCCTTGATATTTTCTT 58.275 30.769 0.00 0.00 0.00 2.52
4338 7700 7.599998 ACATGTTTTGCAGTCCTTGATATTTTC 59.400 33.333 0.00 0.00 0.00 2.29
4339 7701 7.444299 ACATGTTTTGCAGTCCTTGATATTTT 58.556 30.769 0.00 0.00 0.00 1.82
4341 7703 6.594788 ACATGTTTTGCAGTCCTTGATATT 57.405 33.333 0.00 0.00 0.00 1.28
4342 7704 7.112122 TCTACATGTTTTGCAGTCCTTGATAT 58.888 34.615 2.30 0.00 0.00 1.63
4343 7705 6.472016 TCTACATGTTTTGCAGTCCTTGATA 58.528 36.000 2.30 0.00 0.00 2.15
4344 7706 5.316167 TCTACATGTTTTGCAGTCCTTGAT 58.684 37.500 2.30 0.00 0.00 2.57
4345 7707 4.713553 TCTACATGTTTTGCAGTCCTTGA 58.286 39.130 2.30 0.00 0.00 3.02
4346 7708 5.239306 TCTTCTACATGTTTTGCAGTCCTTG 59.761 40.000 2.30 0.00 0.00 3.61
4347 7709 5.376625 TCTTCTACATGTTTTGCAGTCCTT 58.623 37.500 2.30 0.00 0.00 3.36
4348 7710 4.973168 TCTTCTACATGTTTTGCAGTCCT 58.027 39.130 2.30 0.00 0.00 3.85
4349 7711 5.689383 TTCTTCTACATGTTTTGCAGTCC 57.311 39.130 2.30 0.00 0.00 3.85
4376 11102 7.285401 ACACCACATTCTGTTTTGTAGATCTTT 59.715 33.333 0.00 0.00 0.00 2.52
4390 11116 1.247567 GGGACCAACACCACATTCTG 58.752 55.000 0.00 0.00 0.00 3.02
4410 11136 2.124860 GGGCAATACCGTCGCCTT 60.125 61.111 0.00 0.00 45.50 4.35
4420 11146 0.679640 CCACGGCAAGAAGGGCAATA 60.680 55.000 0.00 0.00 0.00 1.90
4444 11170 1.067213 GCTCTTCTCGAAGCTTGGAGT 60.067 52.381 30.20 0.00 38.28 3.85
4448 11174 1.267365 CTCGCTCTTCTCGAAGCTTG 58.733 55.000 2.10 0.00 38.28 4.01
4456 11182 1.925847 CATCAACAGCTCGCTCTTCTC 59.074 52.381 0.00 0.00 0.00 2.87
4481 11207 1.853114 GACGAGAGACGACCACTGCA 61.853 60.000 0.00 0.00 45.77 4.41
4482 11208 1.154188 GACGAGAGACGACCACTGC 60.154 63.158 0.00 0.00 45.77 4.40
4498 11224 3.630769 TGTCACCACTCCATATAGTCGAC 59.369 47.826 7.70 7.70 0.00 4.20
4511 11237 0.888619 ATCGTCATCGTGTCACCACT 59.111 50.000 0.00 0.00 39.55 4.00
4513 11239 0.885196 TCATCGTCATCGTGTCACCA 59.115 50.000 0.00 0.00 38.33 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.