Multiple sequence alignment - TraesCS6A01G098000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G098000 chr6A 100.000 2712 0 0 1 2712 65074841 65072130 0.000000e+00 5009.0
1 TraesCS6A01G098000 chr6A 87.860 1318 84 27 711 1988 65134366 65133085 0.000000e+00 1478.0
2 TraesCS6A01G098000 chr6A 86.777 847 69 17 1160 1990 65140740 65139921 0.000000e+00 904.0
3 TraesCS6A01G098000 chr6A 88.854 323 20 7 2052 2362 65133045 65132727 1.520000e-102 383.0
4 TraesCS6A01G098000 chr6A 86.687 323 23 9 2052 2362 65139885 65139571 9.300000e-90 340.0
5 TraesCS6A01G098000 chr6A 90.865 208 13 3 470 671 65134575 65134368 9.570000e-70 274.0
6 TraesCS6A01G098000 chr6A 88.372 43 5 0 298 340 266923775 266923817 5.000000e-03 52.8
7 TraesCS6A01G098000 chr6D 89.747 1424 70 25 470 1855 49848298 49849683 0.000000e+00 1751.0
8 TraesCS6A01G098000 chr6D 90.058 1378 59 17 561 1900 49854772 49856109 0.000000e+00 1714.0
9 TraesCS6A01G098000 chr6D 94.909 825 29 2 1898 2712 49856232 49857053 0.000000e+00 1279.0
10 TraesCS6A01G098000 chr6D 84.368 1305 98 45 1158 2423 49843096 49844333 0.000000e+00 1182.0
11 TraesCS6A01G098000 chr6D 87.411 421 38 8 1154 1566 47810907 47810494 1.140000e-128 470.0
12 TraesCS6A01G098000 chr6D 85.194 439 43 11 1995 2423 49851680 49852106 5.360000e-117 431.0
13 TraesCS6A01G098000 chr6D 85.135 148 14 5 537 682 47811908 47811767 7.830000e-31 145.0
14 TraesCS6A01G098000 chr6B 93.643 818 39 2 1905 2712 121529226 121528412 0.000000e+00 1210.0
15 TraesCS6A01G098000 chr6B 92.109 773 37 11 757 1519 121529980 121529222 0.000000e+00 1068.0
16 TraesCS6A01G098000 chr6B 82.890 865 72 36 1158 1990 121732634 121731814 0.000000e+00 708.0
17 TraesCS6A01G098000 chr6B 87.500 392 19 16 2058 2426 121717192 121716808 2.500000e-115 425.0
18 TraesCS6A01G098000 chr6B 88.323 334 36 3 1154 1485 123724158 123724490 5.440000e-107 398.0
19 TraesCS6A01G098000 chr6B 90.753 292 11 9 469 760 121530526 121530251 2.550000e-100 375.0
20 TraesCS6A01G098000 chr6B 81.366 322 39 16 787 1105 121733618 121733315 2.700000e-60 243.0
21 TraesCS6A01G098000 chr7D 91.117 349 30 1 5 353 30493386 30493039 3.160000e-129 472.0
22 TraesCS6A01G098000 chr7D 88.166 338 30 6 3 338 30492607 30492278 7.040000e-106 394.0
23 TraesCS6A01G098000 chr1A 92.308 130 8 2 339 468 363967165 363967038 1.660000e-42 183.0
24 TraesCS6A01G098000 chr5A 91.304 46 3 1 303 348 131693837 131693881 8.110000e-06 62.1
25 TraesCS6A01G098000 chr5D 100.000 29 0 0 311 339 6976010 6976038 1.000000e-03 54.7
26 TraesCS6A01G098000 chr4B 100.000 29 0 0 311 339 115091003 115091031 1.000000e-03 54.7
27 TraesCS6A01G098000 chr3D 100.000 29 0 0 311 339 611103635 611103663 1.000000e-03 54.7
28 TraesCS6A01G098000 chr5B 96.774 31 1 0 313 343 239336117 239336087 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G098000 chr6A 65072130 65074841 2711 True 5009.000000 5009 100.000000 1 2712 1 chr6A.!!$R1 2711
1 TraesCS6A01G098000 chr6A 65132727 65134575 1848 True 711.666667 1478 89.193000 470 2362 3 chr6A.!!$R2 1892
2 TraesCS6A01G098000 chr6A 65139571 65140740 1169 True 622.000000 904 86.732000 1160 2362 2 chr6A.!!$R3 1202
3 TraesCS6A01G098000 chr6D 49843096 49857053 13957 False 1271.400000 1751 88.855200 470 2712 5 chr6D.!!$F1 2242
4 TraesCS6A01G098000 chr6D 47810494 47811908 1414 True 307.500000 470 86.273000 537 1566 2 chr6D.!!$R1 1029
5 TraesCS6A01G098000 chr6B 121528412 121530526 2114 True 884.333333 1210 92.168333 469 2712 3 chr6B.!!$R2 2243
6 TraesCS6A01G098000 chr6B 121731814 121733618 1804 True 475.500000 708 82.128000 787 1990 2 chr6B.!!$R3 1203
7 TraesCS6A01G098000 chr7D 30492278 30493386 1108 True 433.000000 472 89.641500 3 353 2 chr7D.!!$R1 350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.034477 CCCTGCCGTGGAATAAGGTT 60.034 55.0 0.0 0.0 0.0 3.50 F
1539 14637 0.038166 TCCAGGTGATCAAACCAGCC 59.962 55.0 0.0 0.0 43.2 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 14752 0.035915 GACTTGGAAGAGGGTCTGCC 60.036 60.0 0.0 0.0 42.94 4.85 R
2512 15815 0.249784 CATGCAGAGATCACTCGGGG 60.250 60.0 0.0 0.0 46.64 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.036952 CATGTAGGCCATAGCTCGGG 60.037 60.000 5.01 0.00 39.73 5.14
20 21 0.178932 ATGTAGGCCATAGCTCGGGA 60.179 55.000 5.01 0.00 39.73 5.14
23 24 0.105658 TAGGCCATAGCTCGGGAAGT 60.106 55.000 5.01 0.00 39.73 3.01
25 26 1.522569 GCCATAGCTCGGGAAGTGT 59.477 57.895 7.73 0.00 35.50 3.55
59 60 5.655532 ACCCAGCTCGACTAGATTAGTTTTA 59.344 40.000 0.00 0.00 39.59 1.52
93 94 6.374333 AGCCGTTCACTTGTGATAATATGTTT 59.626 34.615 4.18 0.00 0.00 2.83
142 143 1.064505 CATGACCATGCGATTGACCAC 59.935 52.381 0.00 0.00 31.39 4.16
150 151 1.299541 GCGATTGACCACATTCGGAT 58.700 50.000 13.45 0.00 44.59 4.18
151 152 1.003545 GCGATTGACCACATTCGGATG 60.004 52.381 0.88 0.88 44.59 3.51
156 157 3.274095 TGACCACATTCGGATGCATTA 57.726 42.857 2.75 0.00 36.72 1.90
271 272 1.683917 CTATGGAGGGGTCTTGACTCG 59.316 57.143 0.61 0.00 32.11 4.18
353 354 7.455058 TGTTTGCTAGTCCTTATAAACTGGAA 58.545 34.615 5.19 0.00 0.00 3.53
354 355 8.107095 TGTTTGCTAGTCCTTATAAACTGGAAT 58.893 33.333 5.19 2.12 32.69 3.01
355 356 8.613482 GTTTGCTAGTCCTTATAAACTGGAATC 58.387 37.037 5.19 0.00 30.51 2.52
356 357 7.676683 TGCTAGTCCTTATAAACTGGAATCT 57.323 36.000 5.19 0.00 30.51 2.40
358 359 7.565398 TGCTAGTCCTTATAAACTGGAATCTCT 59.435 37.037 5.19 0.00 30.51 3.10
360 361 9.974980 CTAGTCCTTATAAACTGGAATCTCTTC 57.025 37.037 0.85 0.00 30.51 2.87
361 362 8.616799 AGTCCTTATAAACTGGAATCTCTTCT 57.383 34.615 0.00 0.00 0.00 2.85
362 363 8.700973 AGTCCTTATAAACTGGAATCTCTTCTC 58.299 37.037 0.00 0.00 0.00 2.87
363 364 7.929245 GTCCTTATAAACTGGAATCTCTTCTCC 59.071 40.741 0.00 0.00 0.00 3.71
364 365 7.846823 TCCTTATAAACTGGAATCTCTTCTCCT 59.153 37.037 0.00 0.00 32.51 3.69
365 366 8.490311 CCTTATAAACTGGAATCTCTTCTCCTT 58.510 37.037 0.00 0.00 32.51 3.36
371 372 6.883744 ACTGGAATCTCTTCTCCTTAATGAC 58.116 40.000 0.00 0.00 32.51 3.06
372 373 6.126911 ACTGGAATCTCTTCTCCTTAATGACC 60.127 42.308 0.00 0.00 32.51 4.02
373 374 5.163405 TGGAATCTCTTCTCCTTAATGACCG 60.163 44.000 0.00 0.00 32.51 4.79
375 376 3.096852 TCTCTTCTCCTTAATGACCGCA 58.903 45.455 0.00 0.00 0.00 5.69
377 378 3.096852 TCTTCTCCTTAATGACCGCAGA 58.903 45.455 0.00 0.00 0.00 4.26
378 379 3.513912 TCTTCTCCTTAATGACCGCAGAA 59.486 43.478 0.00 0.00 0.00 3.02
380 381 3.596214 TCTCCTTAATGACCGCAGAAAC 58.404 45.455 0.00 0.00 0.00 2.78
381 382 2.678336 CTCCTTAATGACCGCAGAAACC 59.322 50.000 0.00 0.00 0.00 3.27
384 385 0.988832 TAATGACCGCAGAAACCCCT 59.011 50.000 0.00 0.00 0.00 4.79
391 392 2.672996 CAGAAACCCCTGCCGTGG 60.673 66.667 0.00 0.00 0.00 4.94
394 395 1.304134 GAAACCCCTGCCGTGGAAT 60.304 57.895 0.00 0.00 0.00 3.01
395 396 0.034863 GAAACCCCTGCCGTGGAATA 60.035 55.000 0.00 0.00 0.00 1.75
396 397 0.406361 AAACCCCTGCCGTGGAATAA 59.594 50.000 0.00 0.00 0.00 1.40
399 400 1.607612 CCCTGCCGTGGAATAAGGT 59.392 57.895 0.00 0.00 0.00 3.50
400 401 0.034477 CCCTGCCGTGGAATAAGGTT 60.034 55.000 0.00 0.00 0.00 3.50
401 402 1.379527 CCTGCCGTGGAATAAGGTTC 58.620 55.000 0.00 0.00 0.00 3.62
403 404 2.618045 CCTGCCGTGGAATAAGGTTCTT 60.618 50.000 0.00 0.00 0.00 2.52
404 405 3.370103 CCTGCCGTGGAATAAGGTTCTTA 60.370 47.826 0.00 0.00 0.00 2.10
405 406 4.258543 CTGCCGTGGAATAAGGTTCTTAA 58.741 43.478 0.00 0.00 0.00 1.85
406 407 4.004982 TGCCGTGGAATAAGGTTCTTAAC 58.995 43.478 0.00 0.00 0.00 2.01
407 408 4.004982 GCCGTGGAATAAGGTTCTTAACA 58.995 43.478 0.00 0.00 0.00 2.41
408 409 4.456566 GCCGTGGAATAAGGTTCTTAACAA 59.543 41.667 0.00 0.00 0.00 2.83
410 411 6.349860 GCCGTGGAATAAGGTTCTTAACAAAT 60.350 38.462 0.00 0.00 0.00 2.32
411 412 7.148205 GCCGTGGAATAAGGTTCTTAACAAATA 60.148 37.037 0.00 0.00 0.00 1.40
412 413 8.899771 CCGTGGAATAAGGTTCTTAACAAATAT 58.100 33.333 0.00 0.00 0.00 1.28
421 422 7.054751 AGGTTCTTAACAAATATAGCAGGACC 58.945 38.462 0.00 0.00 0.00 4.46
424 425 9.555727 GTTCTTAACAAATATAGCAGGACCATA 57.444 33.333 0.00 0.00 0.00 2.74
434 435 6.840780 ATAGCAGGACCATATATTTTTGCC 57.159 37.500 0.00 0.00 0.00 4.52
435 436 3.897505 AGCAGGACCATATATTTTTGCCC 59.102 43.478 0.00 0.00 0.00 5.36
436 437 3.006859 GCAGGACCATATATTTTTGCCCC 59.993 47.826 0.00 0.00 0.00 5.80
437 438 3.578282 CAGGACCATATATTTTTGCCCCC 59.422 47.826 0.00 0.00 0.00 5.40
438 439 3.470921 AGGACCATATATTTTTGCCCCCT 59.529 43.478 0.00 0.00 0.00 4.79
439 440 3.832490 GGACCATATATTTTTGCCCCCTC 59.168 47.826 0.00 0.00 0.00 4.30
440 441 4.449229 GGACCATATATTTTTGCCCCCTCT 60.449 45.833 0.00 0.00 0.00 3.69
441 442 4.740902 ACCATATATTTTTGCCCCCTCTC 58.259 43.478 0.00 0.00 0.00 3.20
443 444 5.147032 CCATATATTTTTGCCCCCTCTCAA 58.853 41.667 0.00 0.00 0.00 3.02
445 446 2.702270 ATTTTTGCCCCCTCTCAAGT 57.298 45.000 0.00 0.00 0.00 3.16
448 449 2.470057 TTTGCCCCCTCTCAAGTTTT 57.530 45.000 0.00 0.00 0.00 2.43
582 5320 0.804364 CAACACCACCACCATCGATG 59.196 55.000 18.76 18.76 0.00 3.84
592 5330 3.450817 ACCACCATCGATGATCACTTGTA 59.549 43.478 26.86 0.00 0.00 2.41
695 5437 3.062909 GGTACGCATTTTGTTCATCGCTA 59.937 43.478 0.00 0.00 0.00 4.26
696 5438 4.260620 GGTACGCATTTTGTTCATCGCTAT 60.261 41.667 0.00 0.00 0.00 2.97
697 5439 3.683989 ACGCATTTTGTTCATCGCTATG 58.316 40.909 0.00 0.00 0.00 2.23
770 6250 1.324736 CCAGAGTTAGAAATGCGTCGC 59.675 52.381 11.10 11.10 0.00 5.19
771 6251 1.324736 CAGAGTTAGAAATGCGTCGCC 59.675 52.381 15.88 0.00 0.00 5.54
903 6383 6.994221 ACCTTGACTATAAATAGATGGACCG 58.006 40.000 4.02 0.00 34.50 4.79
1012 6500 4.147322 GCACAATGGCGTCGTCCG 62.147 66.667 0.00 0.00 40.40 4.79
1096 6680 1.811266 GCGGCGAAGAAGAGCATCA 60.811 57.895 12.98 0.00 37.82 3.07
1144 6728 2.134287 CCGTCGGGACCCATCATCT 61.134 63.158 12.15 0.00 34.06 2.90
1519 14617 0.825425 CTCGGCCTGATCTCTGCCTA 60.825 60.000 15.51 6.87 43.12 3.93
1520 14618 0.178950 TCGGCCTGATCTCTGCCTAT 60.179 55.000 15.51 0.00 43.12 2.57
1521 14619 0.246086 CGGCCTGATCTCTGCCTATC 59.754 60.000 15.51 0.00 43.12 2.08
1522 14620 0.612744 GGCCTGATCTCTGCCTATCC 59.387 60.000 11.85 0.00 42.01 2.59
1523 14621 1.346062 GCCTGATCTCTGCCTATCCA 58.654 55.000 0.00 0.00 0.00 3.41
1524 14622 1.275856 GCCTGATCTCTGCCTATCCAG 59.724 57.143 0.00 0.00 0.00 3.86
1525 14623 1.901159 CCTGATCTCTGCCTATCCAGG 59.099 57.143 0.00 0.00 45.77 4.45
1526 14624 2.607499 CTGATCTCTGCCTATCCAGGT 58.393 52.381 0.00 0.00 44.68 4.00
1527 14625 2.299582 CTGATCTCTGCCTATCCAGGTG 59.700 54.545 0.00 0.00 44.68 4.00
1528 14626 2.091111 TGATCTCTGCCTATCCAGGTGA 60.091 50.000 0.00 0.00 44.68 4.02
1529 14627 2.783379 TCTCTGCCTATCCAGGTGAT 57.217 50.000 0.00 0.00 44.68 3.06
1530 14628 2.603021 TCTCTGCCTATCCAGGTGATC 58.397 52.381 0.00 0.00 44.68 2.92
1531 14629 2.091111 TCTCTGCCTATCCAGGTGATCA 60.091 50.000 0.00 0.00 44.68 2.92
1532 14630 2.702478 CTCTGCCTATCCAGGTGATCAA 59.298 50.000 0.00 0.00 44.68 2.57
1533 14631 3.114606 TCTGCCTATCCAGGTGATCAAA 58.885 45.455 0.00 0.00 44.68 2.69
1534 14632 3.118261 TCTGCCTATCCAGGTGATCAAAC 60.118 47.826 0.00 0.00 44.68 2.93
1535 14633 2.092429 TGCCTATCCAGGTGATCAAACC 60.092 50.000 0.00 0.00 44.68 3.27
1536 14634 2.092429 GCCTATCCAGGTGATCAAACCA 60.092 50.000 0.00 0.00 44.68 3.67
1537 14635 3.813443 CCTATCCAGGTGATCAAACCAG 58.187 50.000 0.00 0.00 43.20 4.00
1538 14636 2.134789 ATCCAGGTGATCAAACCAGC 57.865 50.000 0.00 0.00 43.20 4.85
1539 14637 0.038166 TCCAGGTGATCAAACCAGCC 59.962 55.000 0.00 0.00 43.20 4.85
1540 14638 1.308069 CCAGGTGATCAAACCAGCCG 61.308 60.000 0.00 0.00 43.20 5.52
1541 14639 1.675641 AGGTGATCAAACCAGCCGC 60.676 57.895 0.00 0.00 43.20 6.53
1542 14640 1.971167 GGTGATCAAACCAGCCGCA 60.971 57.895 0.00 0.00 40.22 5.69
1543 14641 1.315257 GGTGATCAAACCAGCCGCAT 61.315 55.000 0.00 0.00 40.22 4.73
1544 14642 0.099436 GTGATCAAACCAGCCGCATC 59.901 55.000 0.00 0.00 0.00 3.91
1545 14643 0.322366 TGATCAAACCAGCCGCATCA 60.322 50.000 0.00 0.00 0.00 3.07
1546 14644 1.027357 GATCAAACCAGCCGCATCAT 58.973 50.000 0.00 0.00 0.00 2.45
1547 14645 1.002033 GATCAAACCAGCCGCATCATC 60.002 52.381 0.00 0.00 0.00 2.92
1548 14646 0.322366 TCAAACCAGCCGCATCATCA 60.322 50.000 0.00 0.00 0.00 3.07
1549 14647 0.179156 CAAACCAGCCGCATCATCAC 60.179 55.000 0.00 0.00 0.00 3.06
1550 14648 0.322816 AAACCAGCCGCATCATCACT 60.323 50.000 0.00 0.00 0.00 3.41
1551 14649 0.541392 AACCAGCCGCATCATCACTA 59.459 50.000 0.00 0.00 0.00 2.74
1552 14650 0.105593 ACCAGCCGCATCATCACTAG 59.894 55.000 0.00 0.00 0.00 2.57
1553 14651 0.602106 CCAGCCGCATCATCACTAGG 60.602 60.000 0.00 0.00 0.00 3.02
1554 14652 0.390492 CAGCCGCATCATCACTAGGA 59.610 55.000 0.00 0.00 0.00 2.94
1555 14653 1.001746 CAGCCGCATCATCACTAGGAT 59.998 52.381 0.00 0.00 36.39 3.24
1556 14654 1.274728 AGCCGCATCATCACTAGGATC 59.725 52.381 0.00 0.00 32.57 3.36
1557 14655 1.274728 GCCGCATCATCACTAGGATCT 59.725 52.381 0.00 0.00 32.57 2.75
1558 14656 2.289320 GCCGCATCATCACTAGGATCTT 60.289 50.000 0.00 0.00 32.57 2.40
1559 14657 3.583806 CCGCATCATCACTAGGATCTTC 58.416 50.000 0.00 0.00 32.57 2.87
1560 14658 3.240884 CGCATCATCACTAGGATCTTCG 58.759 50.000 0.00 0.00 32.57 3.79
1561 14659 3.583806 GCATCATCACTAGGATCTTCGG 58.416 50.000 0.00 0.00 32.57 4.30
1562 14660 3.006323 GCATCATCACTAGGATCTTCGGT 59.994 47.826 0.00 0.00 32.57 4.69
1563 14661 4.502259 GCATCATCACTAGGATCTTCGGTT 60.502 45.833 0.00 0.00 32.57 4.44
1564 14662 5.279006 GCATCATCACTAGGATCTTCGGTTA 60.279 44.000 0.00 0.00 32.57 2.85
1565 14663 5.769484 TCATCACTAGGATCTTCGGTTAC 57.231 43.478 0.00 0.00 32.57 2.50
1566 14664 4.583489 TCATCACTAGGATCTTCGGTTACC 59.417 45.833 0.00 0.00 32.57 2.85
1567 14665 4.246712 TCACTAGGATCTTCGGTTACCT 57.753 45.455 0.00 0.00 35.11 3.08
1568 14666 3.952323 TCACTAGGATCTTCGGTTACCTG 59.048 47.826 0.00 0.00 32.90 4.00
1569 14667 2.694109 ACTAGGATCTTCGGTTACCTGC 59.306 50.000 0.00 0.00 32.90 4.85
1570 14668 1.568504 AGGATCTTCGGTTACCTGCA 58.431 50.000 0.00 0.00 0.00 4.41
1571 14669 1.906574 AGGATCTTCGGTTACCTGCAA 59.093 47.619 0.00 0.00 0.00 4.08
1572 14670 2.007608 GGATCTTCGGTTACCTGCAAC 58.992 52.381 0.00 0.00 0.00 4.17
1573 14671 1.659098 GATCTTCGGTTACCTGCAACG 59.341 52.381 0.00 0.00 0.00 4.10
1574 14672 0.390124 TCTTCGGTTACCTGCAACGT 59.610 50.000 0.00 0.00 0.00 3.99
1575 14673 1.612950 TCTTCGGTTACCTGCAACGTA 59.387 47.619 0.00 0.00 0.00 3.57
1576 14674 1.990563 CTTCGGTTACCTGCAACGTAG 59.009 52.381 0.00 0.00 0.00 3.51
1577 14675 1.246649 TCGGTTACCTGCAACGTAGA 58.753 50.000 0.00 0.00 0.00 2.59
1578 14676 1.200716 TCGGTTACCTGCAACGTAGAG 59.799 52.381 0.00 0.00 0.00 2.43
1579 14677 1.356938 GGTTACCTGCAACGTAGAGC 58.643 55.000 0.00 0.00 0.00 4.09
1580 14678 1.067071 GGTTACCTGCAACGTAGAGCT 60.067 52.381 8.68 0.00 33.80 4.09
1581 14679 2.165030 GGTTACCTGCAACGTAGAGCTA 59.835 50.000 8.68 0.00 33.80 3.32
1582 14680 3.436496 GTTACCTGCAACGTAGAGCTAG 58.564 50.000 8.68 0.00 33.80 3.42
1583 14681 0.818296 ACCTGCAACGTAGAGCTAGG 59.182 55.000 16.67 16.67 36.92 3.02
1584 14682 0.528684 CCTGCAACGTAGAGCTAGGC 60.529 60.000 8.68 0.00 33.80 3.93
1585 14683 0.457851 CTGCAACGTAGAGCTAGGCT 59.542 55.000 8.68 0.00 43.88 4.58
1599 14697 5.538849 AGCTAGGCTCCTAACTTATTCAC 57.461 43.478 0.00 0.00 30.62 3.18
1600 14698 5.212745 AGCTAGGCTCCTAACTTATTCACT 58.787 41.667 0.00 0.00 30.62 3.41
1601 14699 5.069781 AGCTAGGCTCCTAACTTATTCACTG 59.930 44.000 0.00 0.00 30.62 3.66
1602 14700 5.163395 GCTAGGCTCCTAACTTATTCACTGT 60.163 44.000 0.00 0.00 0.00 3.55
1603 14701 5.763876 AGGCTCCTAACTTATTCACTGTT 57.236 39.130 0.00 0.00 0.00 3.16
1604 14702 6.128138 AGGCTCCTAACTTATTCACTGTTT 57.872 37.500 0.00 0.00 0.00 2.83
1605 14703 6.543735 AGGCTCCTAACTTATTCACTGTTTT 58.456 36.000 0.00 0.00 0.00 2.43
1606 14704 7.004691 AGGCTCCTAACTTATTCACTGTTTTT 58.995 34.615 0.00 0.00 0.00 1.94
1627 14725 6.820470 TTTTCTTTGTATTTTTCGTGCAGG 57.180 33.333 0.00 0.00 0.00 4.85
1628 14726 5.759506 TTCTTTGTATTTTTCGTGCAGGA 57.240 34.783 4.68 4.68 0.00 3.86
1629 14727 5.356882 TCTTTGTATTTTTCGTGCAGGAG 57.643 39.130 9.34 0.00 0.00 3.69
1630 14728 4.215399 TCTTTGTATTTTTCGTGCAGGAGG 59.785 41.667 9.34 0.00 0.00 4.30
1631 14729 3.410631 TGTATTTTTCGTGCAGGAGGA 57.589 42.857 9.34 0.00 0.00 3.71
1632 14730 3.334691 TGTATTTTTCGTGCAGGAGGAG 58.665 45.455 9.34 0.00 0.00 3.69
1637 14735 2.563050 TTCGTGCAGGAGGAGATGCG 62.563 60.000 9.34 0.00 45.54 4.73
1638 14736 2.581354 GTGCAGGAGGAGATGCGT 59.419 61.111 0.00 0.00 45.54 5.24
1639 14737 1.812922 GTGCAGGAGGAGATGCGTG 60.813 63.158 0.00 0.00 45.54 5.34
1640 14738 1.984026 TGCAGGAGGAGATGCGTGA 60.984 57.895 0.00 0.00 45.54 4.35
1641 14739 1.227205 GCAGGAGGAGATGCGTGAG 60.227 63.158 0.00 0.00 31.87 3.51
1646 14744 3.034635 AGGAGGAGATGCGTGAGTAAAT 58.965 45.455 0.00 0.00 0.00 1.40
1648 14746 4.649674 AGGAGGAGATGCGTGAGTAAATTA 59.350 41.667 0.00 0.00 0.00 1.40
1651 14749 6.018669 GGAGGAGATGCGTGAGTAAATTAAAG 60.019 42.308 0.00 0.00 0.00 1.85
1654 14752 7.225538 AGGAGATGCGTGAGTAAATTAAAGATG 59.774 37.037 0.00 0.00 0.00 2.90
1656 14754 5.229921 TGCGTGAGTAAATTAAAGATGGC 57.770 39.130 0.00 0.00 0.00 4.40
1657 14755 4.697828 TGCGTGAGTAAATTAAAGATGGCA 59.302 37.500 0.00 0.00 0.00 4.92
1658 14756 5.163764 TGCGTGAGTAAATTAAAGATGGCAG 60.164 40.000 0.00 0.00 0.00 4.85
1664 14762 6.122964 AGTAAATTAAAGATGGCAGACCCTC 58.877 40.000 0.00 0.00 33.59 4.30
1668 14766 0.915364 AAGATGGCAGACCCTCTTCC 59.085 55.000 0.00 0.00 44.86 3.46
1669 14767 0.252881 AGATGGCAGACCCTCTTCCA 60.253 55.000 0.00 0.00 43.63 3.53
1671 14769 0.622665 ATGGCAGACCCTCTTCCAAG 59.377 55.000 0.00 0.00 42.79 3.61
1672 14770 0.768221 TGGCAGACCCTCTTCCAAGT 60.768 55.000 0.00 0.00 36.87 3.16
1673 14771 0.035915 GGCAGACCCTCTTCCAAGTC 60.036 60.000 0.00 0.00 29.80 3.01
1674 14772 0.390472 GCAGACCCTCTTCCAAGTCG 60.390 60.000 0.00 0.00 34.41 4.18
1675 14773 1.257743 CAGACCCTCTTCCAAGTCGA 58.742 55.000 0.00 0.00 34.41 4.20
1676 14774 1.067495 CAGACCCTCTTCCAAGTCGAC 60.067 57.143 7.70 7.70 34.41 4.20
1677 14775 0.109226 GACCCTCTTCCAAGTCGACG 60.109 60.000 10.46 0.00 0.00 5.12
1678 14776 0.538977 ACCCTCTTCCAAGTCGACGA 60.539 55.000 10.46 0.00 0.00 4.20
1679 14777 0.601558 CCCTCTTCCAAGTCGACGAA 59.398 55.000 10.46 7.04 0.00 3.85
1680 14778 1.402984 CCCTCTTCCAAGTCGACGAAG 60.403 57.143 19.64 19.64 35.39 3.79
1681 14779 1.402984 CCTCTTCCAAGTCGACGAAGG 60.403 57.143 23.07 19.42 34.93 3.46
1682 14780 1.540267 CTCTTCCAAGTCGACGAAGGA 59.460 52.381 23.07 20.95 34.93 3.36
1683 14781 2.164624 CTCTTCCAAGTCGACGAAGGAT 59.835 50.000 23.07 0.04 34.93 3.24
1684 14782 2.094700 TCTTCCAAGTCGACGAAGGATG 60.095 50.000 23.07 22.63 34.93 3.51
1685 14783 0.108804 TCCAAGTCGACGAAGGATGC 60.109 55.000 18.53 0.00 0.00 3.91
1686 14784 0.389817 CCAAGTCGACGAAGGATGCA 60.390 55.000 15.92 0.00 0.00 3.96
1687 14785 1.645034 CAAGTCGACGAAGGATGCAT 58.355 50.000 10.46 0.00 0.00 3.96
1688 14786 1.325640 CAAGTCGACGAAGGATGCATG 59.674 52.381 2.46 0.00 0.00 4.06
1689 14787 0.807667 AGTCGACGAAGGATGCATGC 60.808 55.000 11.82 11.82 0.00 4.06
1690 14788 1.083806 GTCGACGAAGGATGCATGCA 61.084 55.000 25.04 25.04 0.00 3.96
1691 14789 0.179076 TCGACGAAGGATGCATGCAT 60.179 50.000 32.66 32.66 39.69 3.96
1692 14790 1.068434 TCGACGAAGGATGCATGCATA 59.932 47.619 32.27 11.46 36.70 3.14
1693 14791 1.193203 CGACGAAGGATGCATGCATAC 59.807 52.381 31.98 31.98 36.70 2.39
1694 14792 1.193203 GACGAAGGATGCATGCATACG 59.807 52.381 32.17 30.43 41.94 3.06
1695 14793 1.202521 ACGAAGGATGCATGCATACGA 60.203 47.619 33.51 14.41 41.94 3.43
1696 14794 1.866601 CGAAGGATGCATGCATACGAA 59.133 47.619 32.17 6.42 41.94 3.85
1697 14795 2.481568 CGAAGGATGCATGCATACGAAT 59.518 45.455 32.17 23.68 41.94 3.34
1698 14796 3.666111 CGAAGGATGCATGCATACGAATG 60.666 47.826 32.17 21.04 41.94 2.67
1717 14815 8.918961 ACGAATGCAGCTTATTATAGATACTC 57.081 34.615 0.00 0.00 0.00 2.59
1718 14816 8.744652 ACGAATGCAGCTTATTATAGATACTCT 58.255 33.333 0.00 0.00 0.00 3.24
1719 14817 9.232082 CGAATGCAGCTTATTATAGATACTCTC 57.768 37.037 0.00 0.00 0.00 3.20
1720 14818 9.528018 GAATGCAGCTTATTATAGATACTCTCC 57.472 37.037 0.00 0.00 0.00 3.71
1721 14819 8.601047 ATGCAGCTTATTATAGATACTCTCCA 57.399 34.615 0.00 0.00 0.00 3.86
1722 14820 8.601047 TGCAGCTTATTATAGATACTCTCCAT 57.399 34.615 0.00 0.00 0.00 3.41
1723 14821 9.700831 TGCAGCTTATTATAGATACTCTCCATA 57.299 33.333 0.00 0.00 0.00 2.74
1724 14822 9.959749 GCAGCTTATTATAGATACTCTCCATAC 57.040 37.037 0.00 0.00 0.00 2.39
1740 14838 5.988310 TCCATACTAGTTGGAGTTTCGAA 57.012 39.130 17.63 0.00 38.35 3.71
1741 14839 6.540438 TCCATACTAGTTGGAGTTTCGAAT 57.460 37.500 17.63 0.00 38.35 3.34
1742 14840 6.942976 TCCATACTAGTTGGAGTTTCGAATT 58.057 36.000 17.63 0.00 38.35 2.17
1743 14841 8.070034 TCCATACTAGTTGGAGTTTCGAATTA 57.930 34.615 17.63 0.00 38.35 1.40
1744 14842 8.533657 TCCATACTAGTTGGAGTTTCGAATTAA 58.466 33.333 17.63 0.00 38.35 1.40
1745 14843 8.601476 CCATACTAGTTGGAGTTTCGAATTAAC 58.399 37.037 15.18 0.00 36.26 2.01
1746 14844 9.146984 CATACTAGTTGGAGTTTCGAATTAACA 57.853 33.333 0.00 0.00 0.00 2.41
1747 14845 9.715121 ATACTAGTTGGAGTTTCGAATTAACAA 57.285 29.630 0.00 0.17 0.00 2.83
1748 14846 7.858583 ACTAGTTGGAGTTTCGAATTAACAAC 58.141 34.615 19.74 19.74 37.73 3.32
1749 14847 6.687081 AGTTGGAGTTTCGAATTAACAACA 57.313 33.333 24.81 12.11 39.36 3.33
1750 14848 6.492254 AGTTGGAGTTTCGAATTAACAACAC 58.508 36.000 24.81 10.29 39.36 3.32
1751 14849 6.094325 AGTTGGAGTTTCGAATTAACAACACA 59.906 34.615 24.81 11.35 39.36 3.72
1752 14850 6.627395 TGGAGTTTCGAATTAACAACACAT 57.373 33.333 0.00 0.00 0.00 3.21
1753 14851 6.434596 TGGAGTTTCGAATTAACAACACATG 58.565 36.000 0.00 0.00 0.00 3.21
1754 14852 5.342259 GGAGTTTCGAATTAACAACACATGC 59.658 40.000 0.00 0.00 0.00 4.06
1755 14853 5.219633 AGTTTCGAATTAACAACACATGCC 58.780 37.500 0.00 0.00 0.00 4.40
1756 14854 4.837896 TTCGAATTAACAACACATGCCA 57.162 36.364 0.00 0.00 0.00 4.92
1757 14855 5.384063 TTCGAATTAACAACACATGCCAT 57.616 34.783 0.00 0.00 0.00 4.40
1758 14856 4.731720 TCGAATTAACAACACATGCCATG 58.268 39.130 2.40 2.40 0.00 3.66
1759 14857 3.858812 CGAATTAACAACACATGCCATGG 59.141 43.478 7.63 7.63 33.60 3.66
1760 14858 4.380339 CGAATTAACAACACATGCCATGGA 60.380 41.667 18.40 0.31 33.60 3.41
1761 14859 5.663456 GAATTAACAACACATGCCATGGAT 58.337 37.500 18.40 3.14 33.60 3.41
1762 14860 6.459435 CGAATTAACAACACATGCCATGGATA 60.459 38.462 18.40 3.30 33.60 2.59
1763 14861 6.982160 ATTAACAACACATGCCATGGATAT 57.018 33.333 18.40 5.96 33.60 1.63
1764 14862 4.659111 AACAACACATGCCATGGATATG 57.341 40.909 18.40 20.29 33.60 1.78
1765 14863 3.900971 ACAACACATGCCATGGATATGA 58.099 40.909 26.79 3.90 36.36 2.15
1766 14864 4.476297 ACAACACATGCCATGGATATGAT 58.524 39.130 26.79 15.92 36.36 2.45
1767 14865 5.633117 ACAACACATGCCATGGATATGATA 58.367 37.500 26.79 3.04 36.36 2.15
1768 14866 5.474532 ACAACACATGCCATGGATATGATAC 59.525 40.000 26.79 5.75 36.36 2.24
1769 14867 5.509832 ACACATGCCATGGATATGATACT 57.490 39.130 26.79 9.39 36.36 2.12
1770 14868 6.625532 ACACATGCCATGGATATGATACTA 57.374 37.500 26.79 0.00 36.36 1.82
1771 14869 6.647229 ACACATGCCATGGATATGATACTAG 58.353 40.000 26.79 15.02 36.36 2.57
1772 14870 5.526479 CACATGCCATGGATATGATACTAGC 59.474 44.000 26.79 5.77 36.36 3.42
1773 14871 5.427806 ACATGCCATGGATATGATACTAGCT 59.572 40.000 26.79 0.00 36.36 3.32
1774 14872 6.612863 ACATGCCATGGATATGATACTAGCTA 59.387 38.462 26.79 0.00 36.36 3.32
1775 14873 6.471233 TGCCATGGATATGATACTAGCTAC 57.529 41.667 18.40 0.00 36.36 3.58
1776 14874 5.363868 TGCCATGGATATGATACTAGCTACC 59.636 44.000 18.40 0.00 36.36 3.18
1777 14875 5.363868 GCCATGGATATGATACTAGCTACCA 59.636 44.000 18.40 0.00 36.36 3.25
1778 14876 6.462207 GCCATGGATATGATACTAGCTACCAG 60.462 46.154 18.40 0.00 36.36 4.00
1779 14877 6.836007 CCATGGATATGATACTAGCTACCAGA 59.164 42.308 5.56 0.00 36.36 3.86
1780 14878 7.508636 CCATGGATATGATACTAGCTACCAGAT 59.491 40.741 5.56 0.00 36.36 2.90
1781 14879 8.575589 CATGGATATGATACTAGCTACCAGATC 58.424 40.741 0.00 0.00 36.36 2.75
1782 14880 6.768381 TGGATATGATACTAGCTACCAGATCG 59.232 42.308 0.00 0.00 0.00 3.69
1783 14881 6.993308 GGATATGATACTAGCTACCAGATCGA 59.007 42.308 0.00 0.00 0.00 3.59
1784 14882 7.663905 GGATATGATACTAGCTACCAGATCGAT 59.336 40.741 0.00 0.00 0.00 3.59
1785 14883 6.935741 ATGATACTAGCTACCAGATCGATC 57.064 41.667 17.91 17.91 0.00 3.69
1786 14884 5.186942 TGATACTAGCTACCAGATCGATCC 58.813 45.833 21.66 5.42 0.00 3.36
1787 14885 3.799432 ACTAGCTACCAGATCGATCCT 57.201 47.619 21.66 12.53 0.00 3.24
1788 14886 3.417101 ACTAGCTACCAGATCGATCCTG 58.583 50.000 21.66 17.33 0.00 3.86
1792 14890 3.554716 CCAGATCGATCCTGGGCA 58.445 61.111 24.74 0.00 45.66 5.36
1793 14891 2.064628 CCAGATCGATCCTGGGCAT 58.935 57.895 24.74 5.81 45.66 4.40
1794 14892 1.269958 CCAGATCGATCCTGGGCATA 58.730 55.000 24.74 0.00 45.66 3.14
1795 14893 1.625315 CCAGATCGATCCTGGGCATAA 59.375 52.381 24.74 0.00 45.66 1.90
1796 14894 2.238144 CCAGATCGATCCTGGGCATAAT 59.762 50.000 24.74 3.97 45.66 1.28
1797 14895 3.268330 CAGATCGATCCTGGGCATAATG 58.732 50.000 21.66 5.74 0.00 1.90
1798 14896 2.012673 GATCGATCCTGGGCATAATGC 58.987 52.381 14.76 0.00 44.08 3.56
1809 14907 2.712057 GCATAATGCCAGTATGCCAC 57.288 50.000 22.86 0.00 45.34 5.01
1810 14908 1.955778 GCATAATGCCAGTATGCCACA 59.044 47.619 22.86 0.00 45.34 4.17
1811 14909 2.287788 GCATAATGCCAGTATGCCACAC 60.288 50.000 22.86 0.00 45.34 3.82
1812 14910 3.216800 CATAATGCCAGTATGCCACACT 58.783 45.455 0.00 0.00 31.97 3.55
1813 14911 1.466856 AATGCCAGTATGCCACACTG 58.533 50.000 0.00 0.00 42.52 3.66
1814 14912 0.329261 ATGCCAGTATGCCACACTGT 59.671 50.000 1.96 0.00 41.52 3.55
1815 14913 0.606130 TGCCAGTATGCCACACTGTG 60.606 55.000 6.19 6.19 41.52 3.66
1835 14933 6.599356 TGTGGTTACAGATGTATGTACTGT 57.401 37.500 0.00 0.00 45.06 3.55
1836 14934 6.627243 TGTGGTTACAGATGTATGTACTGTC 58.373 40.000 0.00 0.00 42.65 3.51
1837 14935 6.436218 TGTGGTTACAGATGTATGTACTGTCT 59.564 38.462 0.00 0.00 42.65 3.41
1838 14936 6.973474 GTGGTTACAGATGTATGTACTGTCTC 59.027 42.308 0.00 0.00 42.65 3.36
1839 14937 6.096423 TGGTTACAGATGTATGTACTGTCTCC 59.904 42.308 0.00 0.00 42.65 3.71
1840 14938 6.096423 GGTTACAGATGTATGTACTGTCTCCA 59.904 42.308 0.00 0.00 42.65 3.86
1841 14939 5.584253 ACAGATGTATGTACTGTCTCCAC 57.416 43.478 0.00 0.00 40.19 4.02
1842 14940 4.096532 ACAGATGTATGTACTGTCTCCACG 59.903 45.833 0.00 0.00 40.19 4.94
1843 14941 2.933495 TGTATGTACTGTCTCCACGC 57.067 50.000 0.00 0.00 0.00 5.34
1844 14942 2.164338 TGTATGTACTGTCTCCACGCA 58.836 47.619 0.00 0.00 0.00 5.24
1845 14943 2.758423 TGTATGTACTGTCTCCACGCAT 59.242 45.455 0.00 0.00 0.00 4.73
1846 14944 3.949113 TGTATGTACTGTCTCCACGCATA 59.051 43.478 0.00 0.00 0.00 3.14
1847 14945 4.399934 TGTATGTACTGTCTCCACGCATAA 59.600 41.667 0.00 0.00 0.00 1.90
1848 14946 4.672587 ATGTACTGTCTCCACGCATAAT 57.327 40.909 0.00 0.00 0.00 1.28
1849 14947 3.780902 TGTACTGTCTCCACGCATAATG 58.219 45.455 0.00 0.00 0.00 1.90
1850 14948 3.445805 TGTACTGTCTCCACGCATAATGA 59.554 43.478 0.00 0.00 0.00 2.57
1851 14949 3.827008 ACTGTCTCCACGCATAATGAT 57.173 42.857 0.00 0.00 0.00 2.45
1852 14950 4.937201 ACTGTCTCCACGCATAATGATA 57.063 40.909 0.00 0.00 0.00 2.15
1853 14951 5.276461 ACTGTCTCCACGCATAATGATAA 57.724 39.130 0.00 0.00 0.00 1.75
1854 14952 5.670485 ACTGTCTCCACGCATAATGATAAA 58.330 37.500 0.00 0.00 0.00 1.40
1855 14953 6.291377 ACTGTCTCCACGCATAATGATAAAT 58.709 36.000 0.00 0.00 0.00 1.40
1856 14954 6.203530 ACTGTCTCCACGCATAATGATAAATG 59.796 38.462 0.00 0.00 0.00 2.32
1857 14955 5.469760 TGTCTCCACGCATAATGATAAATGG 59.530 40.000 0.00 0.00 0.00 3.16
1858 14956 5.700832 GTCTCCACGCATAATGATAAATGGA 59.299 40.000 0.00 0.00 33.97 3.41
1859 14957 6.372659 GTCTCCACGCATAATGATAAATGGAT 59.627 38.462 0.00 0.00 34.59 3.41
1860 14958 7.549134 GTCTCCACGCATAATGATAAATGGATA 59.451 37.037 0.00 0.00 34.59 2.59
1861 14959 8.100164 TCTCCACGCATAATGATAAATGGATAA 58.900 33.333 0.00 0.00 34.59 1.75
1862 14960 8.267620 TCCACGCATAATGATAAATGGATAAG 57.732 34.615 0.00 0.00 30.08 1.73
1899 14997 3.872511 TCTTTAATTGTGCTGCCATGG 57.127 42.857 7.63 7.63 0.00 3.66
1900 14998 3.164268 TCTTTAATTGTGCTGCCATGGT 58.836 40.909 14.67 0.00 0.00 3.55
1901 14999 3.577848 TCTTTAATTGTGCTGCCATGGTT 59.422 39.130 14.67 0.00 0.00 3.67
1902 15000 4.040217 TCTTTAATTGTGCTGCCATGGTTT 59.960 37.500 14.67 0.00 0.00 3.27
1903 15001 2.934886 AATTGTGCTGCCATGGTTTT 57.065 40.000 14.67 0.00 0.00 2.43
1904 15002 2.934886 ATTGTGCTGCCATGGTTTTT 57.065 40.000 14.67 0.00 0.00 1.94
1905 15003 1.950828 TTGTGCTGCCATGGTTTTTG 58.049 45.000 14.67 0.60 0.00 2.44
1906 15004 0.532417 TGTGCTGCCATGGTTTTTGC 60.532 50.000 14.67 11.02 0.00 3.68
1907 15005 1.071128 TGCTGCCATGGTTTTTGCC 59.929 52.632 14.67 0.00 0.00 4.52
1908 15006 1.372307 GCTGCCATGGTTTTTGCCT 59.628 52.632 14.67 0.00 0.00 4.75
1962 15061 7.706159 TCAACTCAGCAAAAATTATATGCGAT 58.294 30.769 0.00 0.00 44.60 4.58
2039 15139 0.311790 CAGCTTTTTCTTGCCTCGCA 59.688 50.000 0.00 0.00 36.47 5.10
2178 15457 6.543831 ACAAAGAGTTGCTTGAGTTTGAGTAT 59.456 34.615 7.95 0.00 38.39 2.12
2206 15509 0.445043 CACATGGATGCGGCGATATG 59.555 55.000 12.98 9.25 0.00 1.78
2356 15659 5.032846 TCAACTCATCTCTAAGTGGGGAAT 58.967 41.667 0.00 0.00 0.00 3.01
2429 15732 1.613925 CAGACCTTCAGGAACTCGTCA 59.386 52.381 0.00 0.00 34.60 4.35
2477 15780 1.902508 CTCCTGTAGTGGTCCACATGT 59.097 52.381 24.02 6.13 36.74 3.21
2512 15815 3.543548 GTGTGCTGAGACGCTCAC 58.456 61.111 5.59 2.83 44.00 3.51
2516 15819 4.803426 GCTGAGACGCTCACCCCG 62.803 72.222 5.59 0.00 35.39 5.73
2627 15930 4.478504 GCGGCTGCTTATCTGAAAGAACT 61.479 47.826 11.21 0.00 42.67 3.01
2682 15985 5.869579 TCAGAAGGGGCAGATAAATATCAC 58.130 41.667 3.45 0.00 35.17 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.397957 TTCCCGAGCTATGGCCTACA 60.398 55.000 3.32 0.00 39.73 2.74
4 5 0.105658 ACTTCCCGAGCTATGGCCTA 60.106 55.000 3.32 0.00 39.73 3.93
5 6 1.383248 ACTTCCCGAGCTATGGCCT 60.383 57.895 3.32 0.00 39.73 5.19
7 8 0.811616 CACACTTCCCGAGCTATGGC 60.812 60.000 0.00 0.00 39.06 4.40
10 11 1.522569 GCCACACTTCCCGAGCTAT 59.477 57.895 0.00 0.00 0.00 2.97
12 13 4.021925 GGCCACACTTCCCGAGCT 62.022 66.667 0.00 0.00 0.00 4.09
15 16 2.220586 TGATGGCCACACTTCCCGA 61.221 57.895 8.16 0.00 0.00 5.14
16 17 2.040544 GTGATGGCCACACTTCCCG 61.041 63.158 23.22 0.00 45.03 5.14
25 26 3.259314 AGCTGGGTGTGATGGCCA 61.259 61.111 8.56 8.56 0.00 5.36
59 60 5.761234 TCACAAGTGAACGGCTAATAGTTTT 59.239 36.000 0.00 0.00 36.53 2.43
93 94 4.384757 GGACCACATGTACACCCATCATTA 60.385 45.833 0.00 0.00 0.00 1.90
142 143 3.124128 CCTGATCGTAATGCATCCGAATG 59.876 47.826 20.80 14.48 33.89 2.67
150 151 3.000041 GTGTCAACCTGATCGTAATGCA 59.000 45.455 0.00 0.00 0.00 3.96
151 152 2.351726 GGTGTCAACCTGATCGTAATGC 59.648 50.000 0.00 0.00 43.84 3.56
173 174 2.654863 CCTTCACGGAAAATAGGCCAT 58.345 47.619 5.01 0.00 33.16 4.40
176 177 0.377203 CGCCTTCACGGAAAATAGGC 59.623 55.000 0.00 0.00 46.16 3.93
253 254 0.252284 ACGAGTCAAGACCCCTCCAT 60.252 55.000 0.00 0.00 0.00 3.41
271 272 4.260948 GCATTCTCCTAGCACATTAAGCAC 60.261 45.833 0.00 0.00 0.00 4.40
305 306 2.141517 CCCATGCGTTGCAATGAAAAA 58.858 42.857 22.81 4.67 43.62 1.94
308 309 1.079956 GCCCATGCGTTGCAATGAA 60.080 52.632 22.81 12.92 43.62 2.57
310 311 1.153529 ATGCCCATGCGTTGCAATG 60.154 52.632 14.54 14.54 43.62 2.82
346 347 7.334858 GTCATTAAGGAGAAGAGATTCCAGTT 58.665 38.462 0.00 0.00 35.88 3.16
348 349 6.287525 GGTCATTAAGGAGAAGAGATTCCAG 58.712 44.000 0.00 0.00 35.88 3.86
353 354 3.706594 TGCGGTCATTAAGGAGAAGAGAT 59.293 43.478 0.00 0.00 0.00 2.75
354 355 3.096852 TGCGGTCATTAAGGAGAAGAGA 58.903 45.455 0.00 0.00 0.00 3.10
355 356 3.131223 TCTGCGGTCATTAAGGAGAAGAG 59.869 47.826 0.00 0.00 29.56 2.85
356 357 3.096852 TCTGCGGTCATTAAGGAGAAGA 58.903 45.455 0.00 0.00 29.56 2.87
358 359 3.973206 TTCTGCGGTCATTAAGGAGAA 57.027 42.857 0.00 0.00 39.42 2.87
360 361 2.678336 GGTTTCTGCGGTCATTAAGGAG 59.322 50.000 0.00 0.00 0.00 3.69
361 362 2.617021 GGGTTTCTGCGGTCATTAAGGA 60.617 50.000 0.00 0.00 0.00 3.36
362 363 1.743394 GGGTTTCTGCGGTCATTAAGG 59.257 52.381 0.00 0.00 0.00 2.69
363 364 1.743394 GGGGTTTCTGCGGTCATTAAG 59.257 52.381 0.00 0.00 0.00 1.85
364 365 1.353022 AGGGGTTTCTGCGGTCATTAA 59.647 47.619 0.00 0.00 0.00 1.40
365 366 0.988832 AGGGGTTTCTGCGGTCATTA 59.011 50.000 0.00 0.00 0.00 1.90
366 367 0.609131 CAGGGGTTTCTGCGGTCATT 60.609 55.000 0.00 0.00 0.00 2.57
367 368 1.002134 CAGGGGTTTCTGCGGTCAT 60.002 57.895 0.00 0.00 0.00 3.06
375 376 1.789576 ATTCCACGGCAGGGGTTTCT 61.790 55.000 4.63 0.00 43.05 2.52
377 378 0.406361 TTATTCCACGGCAGGGGTTT 59.594 50.000 4.63 0.00 43.05 3.27
378 379 0.034477 CTTATTCCACGGCAGGGGTT 60.034 55.000 4.63 0.00 43.05 4.11
380 381 1.152963 CCTTATTCCACGGCAGGGG 60.153 63.158 0.00 0.00 44.22 4.79
381 382 0.034477 AACCTTATTCCACGGCAGGG 60.034 55.000 0.00 0.00 0.00 4.45
384 385 2.871096 AAGAACCTTATTCCACGGCA 57.129 45.000 0.00 0.00 0.00 5.69
386 387 6.563222 TTTGTTAAGAACCTTATTCCACGG 57.437 37.500 0.00 0.00 0.00 4.94
394 395 9.609346 GTCCTGCTATATTTGTTAAGAACCTTA 57.391 33.333 0.00 0.00 0.00 2.69
395 396 7.556635 GGTCCTGCTATATTTGTTAAGAACCTT 59.443 37.037 0.00 0.00 0.00 3.50
396 397 7.054751 GGTCCTGCTATATTTGTTAAGAACCT 58.945 38.462 0.00 0.00 0.00 3.50
408 409 8.971073 GGCAAAAATATATGGTCCTGCTATATT 58.029 33.333 0.00 0.00 33.93 1.28
410 411 6.889722 GGGCAAAAATATATGGTCCTGCTATA 59.110 38.462 0.00 0.00 0.00 1.31
411 412 5.716703 GGGCAAAAATATATGGTCCTGCTAT 59.283 40.000 0.00 0.00 0.00 2.97
412 413 5.076873 GGGCAAAAATATATGGTCCTGCTA 58.923 41.667 0.00 0.00 0.00 3.49
413 414 3.897505 GGGCAAAAATATATGGTCCTGCT 59.102 43.478 0.00 0.00 0.00 4.24
415 416 3.578282 GGGGGCAAAAATATATGGTCCTG 59.422 47.826 0.00 0.00 0.00 3.86
416 417 3.470921 AGGGGGCAAAAATATATGGTCCT 59.529 43.478 0.00 0.00 0.00 3.85
417 418 3.832490 GAGGGGGCAAAAATATATGGTCC 59.168 47.826 0.00 0.00 0.00 4.46
418 419 4.740902 AGAGGGGGCAAAAATATATGGTC 58.259 43.478 0.00 0.00 0.00 4.02
419 420 4.169856 TGAGAGGGGGCAAAAATATATGGT 59.830 41.667 0.00 0.00 0.00 3.55
421 422 5.835280 ACTTGAGAGGGGGCAAAAATATATG 59.165 40.000 0.00 0.00 0.00 1.78
424 425 4.337264 ACTTGAGAGGGGGCAAAAATAT 57.663 40.909 0.00 0.00 0.00 1.28
425 426 3.825908 ACTTGAGAGGGGGCAAAAATA 57.174 42.857 0.00 0.00 0.00 1.40
426 427 2.702270 ACTTGAGAGGGGGCAAAAAT 57.298 45.000 0.00 0.00 0.00 1.82
427 428 2.470057 AACTTGAGAGGGGGCAAAAA 57.530 45.000 0.00 0.00 0.00 1.94
429 430 2.470057 AAAACTTGAGAGGGGGCAAA 57.530 45.000 0.00 0.00 0.00 3.68
430 431 2.470057 AAAAACTTGAGAGGGGGCAA 57.530 45.000 0.00 0.00 0.00 4.52
465 466 0.829333 ATAGGCACAGACCTGAGCAG 59.171 55.000 18.30 0.00 46.60 4.24
467 468 0.539051 ACATAGGCACAGACCTGAGC 59.461 55.000 10.31 10.31 44.59 4.26
582 5320 2.880890 GGGGTGCATGATACAAGTGATC 59.119 50.000 0.00 0.00 0.00 2.92
605 5343 4.057406 TGCTGTTTCAAGGGATTGTTTG 57.943 40.909 0.00 0.00 0.00 2.93
695 5437 5.824904 AATTTCGAGCTCTAATGTTGCAT 57.175 34.783 12.85 0.00 0.00 3.96
696 5438 6.735678 TTAATTTCGAGCTCTAATGTTGCA 57.264 33.333 12.85 0.00 0.00 4.08
697 5439 7.634522 AGATTAATTTCGAGCTCTAATGTTGC 58.365 34.615 12.85 3.65 0.00 4.17
770 6250 0.173481 TGAATTGCCGAGACGAGAGG 59.827 55.000 0.00 0.00 0.00 3.69
771 6251 1.857217 CATGAATTGCCGAGACGAGAG 59.143 52.381 0.00 0.00 0.00 3.20
815 6295 0.687920 TGGTTAGTTCCATGCACGGA 59.312 50.000 0.00 0.00 31.96 4.69
903 6383 0.833287 TGGGCTTAGAGATGCTCACC 59.167 55.000 0.00 0.00 34.40 4.02
1096 6680 3.692406 GGACTTGGGCTCCGACGT 61.692 66.667 0.00 0.00 0.00 4.34
1332 7523 1.888512 GTGTGGTTGAAGATGTGGCAT 59.111 47.619 0.00 0.00 0.00 4.40
1436 7627 1.751927 CAGCTGGCCATGAGGTTCC 60.752 63.158 5.51 0.00 37.19 3.62
1519 14617 1.341383 GGCTGGTTTGATCACCTGGAT 60.341 52.381 0.00 0.00 37.75 3.41
1520 14618 0.038166 GGCTGGTTTGATCACCTGGA 59.962 55.000 0.00 0.00 37.75 3.86
1521 14619 1.308069 CGGCTGGTTTGATCACCTGG 61.308 60.000 0.00 0.00 37.75 4.45
1522 14620 1.926511 GCGGCTGGTTTGATCACCTG 61.927 60.000 0.00 0.00 37.75 4.00
1523 14621 1.675641 GCGGCTGGTTTGATCACCT 60.676 57.895 0.00 0.00 37.75 4.00
1524 14622 1.315257 ATGCGGCTGGTTTGATCACC 61.315 55.000 0.00 0.00 37.34 4.02
1525 14623 0.099436 GATGCGGCTGGTTTGATCAC 59.901 55.000 0.00 0.00 0.00 3.06
1526 14624 0.322366 TGATGCGGCTGGTTTGATCA 60.322 50.000 0.00 0.00 0.00 2.92
1527 14625 1.002033 GATGATGCGGCTGGTTTGATC 60.002 52.381 0.00 0.00 0.00 2.92
1528 14626 1.027357 GATGATGCGGCTGGTTTGAT 58.973 50.000 0.00 0.00 0.00 2.57
1529 14627 0.322366 TGATGATGCGGCTGGTTTGA 60.322 50.000 0.00 0.00 0.00 2.69
1530 14628 0.179156 GTGATGATGCGGCTGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
1531 14629 0.322816 AGTGATGATGCGGCTGGTTT 60.323 50.000 0.00 0.00 0.00 3.27
1532 14630 0.541392 TAGTGATGATGCGGCTGGTT 59.459 50.000 0.00 0.00 0.00 3.67
1533 14631 0.105593 CTAGTGATGATGCGGCTGGT 59.894 55.000 0.00 0.00 0.00 4.00
1534 14632 0.602106 CCTAGTGATGATGCGGCTGG 60.602 60.000 0.00 0.00 0.00 4.85
1535 14633 0.390492 TCCTAGTGATGATGCGGCTG 59.610 55.000 0.00 0.00 0.00 4.85
1536 14634 1.274728 GATCCTAGTGATGATGCGGCT 59.725 52.381 0.00 0.00 32.41 5.52
1537 14635 1.274728 AGATCCTAGTGATGATGCGGC 59.725 52.381 0.00 0.00 32.41 6.53
1538 14636 3.583806 GAAGATCCTAGTGATGATGCGG 58.416 50.000 0.00 0.00 32.41 5.69
1539 14637 3.240884 CGAAGATCCTAGTGATGATGCG 58.759 50.000 0.00 0.00 32.41 4.73
1540 14638 3.006323 ACCGAAGATCCTAGTGATGATGC 59.994 47.826 0.00 0.00 32.41 3.91
1541 14639 4.862902 ACCGAAGATCCTAGTGATGATG 57.137 45.455 0.00 0.00 32.41 3.07
1542 14640 5.244178 GGTAACCGAAGATCCTAGTGATGAT 59.756 44.000 0.00 0.00 32.41 2.45
1543 14641 4.583489 GGTAACCGAAGATCCTAGTGATGA 59.417 45.833 0.00 0.00 32.41 2.92
1544 14642 4.585162 AGGTAACCGAAGATCCTAGTGATG 59.415 45.833 0.00 0.00 31.64 3.07
1545 14643 4.585162 CAGGTAACCGAAGATCCTAGTGAT 59.415 45.833 0.00 0.00 34.00 3.06
1546 14644 3.952323 CAGGTAACCGAAGATCCTAGTGA 59.048 47.826 0.00 0.00 37.17 3.41
1547 14645 3.491104 GCAGGTAACCGAAGATCCTAGTG 60.491 52.174 0.00 0.00 37.17 2.74
1548 14646 2.694109 GCAGGTAACCGAAGATCCTAGT 59.306 50.000 0.00 0.00 37.17 2.57
1549 14647 2.693591 TGCAGGTAACCGAAGATCCTAG 59.306 50.000 0.00 0.00 37.17 3.02
1550 14648 2.742348 TGCAGGTAACCGAAGATCCTA 58.258 47.619 0.00 0.00 37.17 2.94
1551 14649 1.568504 TGCAGGTAACCGAAGATCCT 58.431 50.000 0.00 0.00 37.17 3.24
1552 14650 2.007608 GTTGCAGGTAACCGAAGATCC 58.992 52.381 0.00 0.00 37.17 3.36
1553 14651 1.659098 CGTTGCAGGTAACCGAAGATC 59.341 52.381 0.00 0.00 37.17 2.75
1554 14652 1.001633 ACGTTGCAGGTAACCGAAGAT 59.998 47.619 0.00 0.00 37.17 2.40
1555 14653 0.390124 ACGTTGCAGGTAACCGAAGA 59.610 50.000 0.00 0.00 37.17 2.87
1556 14654 1.990563 CTACGTTGCAGGTAACCGAAG 59.009 52.381 0.00 0.00 37.17 3.79
1557 14655 1.612950 TCTACGTTGCAGGTAACCGAA 59.387 47.619 0.00 0.00 37.17 4.30
1558 14656 1.200716 CTCTACGTTGCAGGTAACCGA 59.799 52.381 0.00 0.00 37.17 4.69
1559 14657 1.625616 CTCTACGTTGCAGGTAACCG 58.374 55.000 0.00 0.00 37.17 4.44
1560 14658 1.067071 AGCTCTACGTTGCAGGTAACC 60.067 52.381 0.00 0.00 37.17 2.85
1561 14659 2.365408 AGCTCTACGTTGCAGGTAAC 57.635 50.000 0.00 0.00 0.00 2.50
1562 14660 2.426024 CCTAGCTCTACGTTGCAGGTAA 59.574 50.000 0.00 0.00 0.00 2.85
1563 14661 2.022195 CCTAGCTCTACGTTGCAGGTA 58.978 52.381 0.00 1.07 0.00 3.08
1564 14662 0.818296 CCTAGCTCTACGTTGCAGGT 59.182 55.000 0.00 0.00 0.00 4.00
1565 14663 0.528684 GCCTAGCTCTACGTTGCAGG 60.529 60.000 0.00 7.53 33.66 4.85
1566 14664 0.457851 AGCCTAGCTCTACGTTGCAG 59.542 55.000 0.00 0.00 30.62 4.41
1567 14665 2.579878 AGCCTAGCTCTACGTTGCA 58.420 52.632 0.00 0.00 30.62 4.08
1577 14675 5.069781 CAGTGAATAAGTTAGGAGCCTAGCT 59.930 44.000 7.05 7.05 43.88 3.32
1578 14676 5.163395 ACAGTGAATAAGTTAGGAGCCTAGC 60.163 44.000 0.00 2.51 0.00 3.42
1579 14677 6.472686 ACAGTGAATAAGTTAGGAGCCTAG 57.527 41.667 0.00 0.00 0.00 3.02
1580 14678 6.869206 AACAGTGAATAAGTTAGGAGCCTA 57.131 37.500 0.00 0.00 0.00 3.93
1581 14679 5.763876 AACAGTGAATAAGTTAGGAGCCT 57.236 39.130 0.00 0.00 0.00 4.58
1582 14680 6.819397 AAAACAGTGAATAAGTTAGGAGCC 57.181 37.500 0.00 0.00 0.00 4.70
1603 14701 7.036220 TCCTGCACGAAAAATACAAAGAAAAA 58.964 30.769 0.00 0.00 0.00 1.94
1604 14702 6.565234 TCCTGCACGAAAAATACAAAGAAAA 58.435 32.000 0.00 0.00 0.00 2.29
1605 14703 6.137794 TCCTGCACGAAAAATACAAAGAAA 57.862 33.333 0.00 0.00 0.00 2.52
1606 14704 5.278266 CCTCCTGCACGAAAAATACAAAGAA 60.278 40.000 0.00 0.00 0.00 2.52
1607 14705 4.215399 CCTCCTGCACGAAAAATACAAAGA 59.785 41.667 0.00 0.00 0.00 2.52
1608 14706 4.215399 TCCTCCTGCACGAAAAATACAAAG 59.785 41.667 0.00 0.00 0.00 2.77
1609 14707 4.138290 TCCTCCTGCACGAAAAATACAAA 58.862 39.130 0.00 0.00 0.00 2.83
1610 14708 3.745799 TCCTCCTGCACGAAAAATACAA 58.254 40.909 0.00 0.00 0.00 2.41
1611 14709 3.007506 TCTCCTCCTGCACGAAAAATACA 59.992 43.478 0.00 0.00 0.00 2.29
1612 14710 3.596214 TCTCCTCCTGCACGAAAAATAC 58.404 45.455 0.00 0.00 0.00 1.89
1613 14711 3.973206 TCTCCTCCTGCACGAAAAATA 57.027 42.857 0.00 0.00 0.00 1.40
1614 14712 2.859165 TCTCCTCCTGCACGAAAAAT 57.141 45.000 0.00 0.00 0.00 1.82
1615 14713 2.426522 CATCTCCTCCTGCACGAAAAA 58.573 47.619 0.00 0.00 0.00 1.94
1616 14714 1.945819 GCATCTCCTCCTGCACGAAAA 60.946 52.381 0.00 0.00 38.28 2.29
1617 14715 0.391661 GCATCTCCTCCTGCACGAAA 60.392 55.000 0.00 0.00 38.28 3.46
1618 14716 1.219124 GCATCTCCTCCTGCACGAA 59.781 57.895 0.00 0.00 38.28 3.85
1619 14717 2.895680 GCATCTCCTCCTGCACGA 59.104 61.111 0.00 0.00 38.28 4.35
1620 14718 2.584418 CGCATCTCCTCCTGCACG 60.584 66.667 0.00 0.00 38.30 5.34
1621 14719 1.812922 CACGCATCTCCTCCTGCAC 60.813 63.158 0.00 0.00 38.30 4.57
1622 14720 1.953231 CTCACGCATCTCCTCCTGCA 61.953 60.000 0.00 0.00 38.30 4.41
1623 14721 1.227205 CTCACGCATCTCCTCCTGC 60.227 63.158 0.00 0.00 35.02 4.85
1624 14722 1.393603 TACTCACGCATCTCCTCCTG 58.606 55.000 0.00 0.00 0.00 3.86
1625 14723 2.145397 TTACTCACGCATCTCCTCCT 57.855 50.000 0.00 0.00 0.00 3.69
1626 14724 2.961526 TTTACTCACGCATCTCCTCC 57.038 50.000 0.00 0.00 0.00 4.30
1627 14725 6.757010 TCTTTAATTTACTCACGCATCTCCTC 59.243 38.462 0.00 0.00 0.00 3.71
1628 14726 6.640518 TCTTTAATTTACTCACGCATCTCCT 58.359 36.000 0.00 0.00 0.00 3.69
1629 14727 6.903883 TCTTTAATTTACTCACGCATCTCC 57.096 37.500 0.00 0.00 0.00 3.71
1630 14728 7.348201 CCATCTTTAATTTACTCACGCATCTC 58.652 38.462 0.00 0.00 0.00 2.75
1631 14729 6.238484 GCCATCTTTAATTTACTCACGCATCT 60.238 38.462 0.00 0.00 0.00 2.90
1632 14730 5.909610 GCCATCTTTAATTTACTCACGCATC 59.090 40.000 0.00 0.00 0.00 3.91
1637 14735 6.183360 GGGTCTGCCATCTTTAATTTACTCAC 60.183 42.308 0.00 0.00 36.17 3.51
1638 14736 5.885912 GGGTCTGCCATCTTTAATTTACTCA 59.114 40.000 0.00 0.00 36.17 3.41
1639 14737 6.122964 AGGGTCTGCCATCTTTAATTTACTC 58.877 40.000 0.00 0.00 36.17 2.59
1640 14738 6.079712 AGGGTCTGCCATCTTTAATTTACT 57.920 37.500 0.00 0.00 36.17 2.24
1641 14739 6.378710 GAGGGTCTGCCATCTTTAATTTAC 57.621 41.667 0.00 0.00 41.97 2.01
1654 14752 0.035915 GACTTGGAAGAGGGTCTGCC 60.036 60.000 0.00 0.00 42.94 4.85
1656 14754 1.067495 GTCGACTTGGAAGAGGGTCTG 60.067 57.143 8.70 0.00 0.00 3.51
1657 14755 1.258676 GTCGACTTGGAAGAGGGTCT 58.741 55.000 8.70 0.00 0.00 3.85
1658 14756 0.109226 CGTCGACTTGGAAGAGGGTC 60.109 60.000 14.70 0.00 0.00 4.46
1664 14762 2.263077 CATCCTTCGTCGACTTGGAAG 58.737 52.381 19.07 19.07 37.50 3.46
1668 14766 1.325640 CATGCATCCTTCGTCGACTTG 59.674 52.381 14.70 0.00 0.00 3.16
1669 14767 1.645034 CATGCATCCTTCGTCGACTT 58.355 50.000 14.70 0.00 0.00 3.01
1671 14769 1.083806 TGCATGCATCCTTCGTCGAC 61.084 55.000 18.46 5.18 0.00 4.20
1672 14770 0.179076 ATGCATGCATCCTTCGTCGA 60.179 50.000 27.46 0.00 29.42 4.20
1673 14771 1.193203 GTATGCATGCATCCTTCGTCG 59.807 52.381 35.35 0.00 37.82 5.12
1674 14772 1.193203 CGTATGCATGCATCCTTCGTC 59.807 52.381 35.35 16.28 37.82 4.20
1675 14773 1.202521 TCGTATGCATGCATCCTTCGT 60.203 47.619 35.35 14.64 37.82 3.85
1676 14774 1.501169 TCGTATGCATGCATCCTTCG 58.499 50.000 35.35 29.66 37.82 3.79
1677 14775 3.818387 CATTCGTATGCATGCATCCTTC 58.182 45.455 35.35 21.52 37.82 3.46
1678 14776 3.909776 CATTCGTATGCATGCATCCTT 57.090 42.857 35.35 16.60 37.82 3.36
1692 14790 8.918961 GAGTATCTATAATAAGCTGCATTCGT 57.081 34.615 1.02 0.00 0.00 3.85
1718 14816 5.988310 TTCGAAACTCCAACTAGTATGGA 57.012 39.130 19.35 19.35 44.58 3.41
1719 14817 8.601476 GTTAATTCGAAACTCCAACTAGTATGG 58.399 37.037 0.00 14.47 39.41 2.74
1720 14818 9.146984 TGTTAATTCGAAACTCCAACTAGTATG 57.853 33.333 0.00 0.00 0.00 2.39
1721 14819 9.715121 TTGTTAATTCGAAACTCCAACTAGTAT 57.285 29.630 0.00 0.00 0.00 2.12
1722 14820 8.981647 GTTGTTAATTCGAAACTCCAACTAGTA 58.018 33.333 18.77 0.00 0.00 1.82
1723 14821 7.496591 TGTTGTTAATTCGAAACTCCAACTAGT 59.503 33.333 22.91 0.00 0.00 2.57
1724 14822 7.797123 GTGTTGTTAATTCGAAACTCCAACTAG 59.203 37.037 22.91 0.00 0.00 2.57
1725 14823 7.280428 TGTGTTGTTAATTCGAAACTCCAACTA 59.720 33.333 22.91 14.95 0.00 2.24
1726 14824 6.094325 TGTGTTGTTAATTCGAAACTCCAACT 59.906 34.615 22.91 0.00 0.00 3.16
1727 14825 6.259638 TGTGTTGTTAATTCGAAACTCCAAC 58.740 36.000 19.03 19.03 0.00 3.77
1728 14826 6.438259 TGTGTTGTTAATTCGAAACTCCAA 57.562 33.333 0.00 0.71 0.00 3.53
1729 14827 6.434596 CATGTGTTGTTAATTCGAAACTCCA 58.565 36.000 0.00 0.00 0.00 3.86
1730 14828 5.342259 GCATGTGTTGTTAATTCGAAACTCC 59.658 40.000 0.00 0.00 0.00 3.85
1731 14829 5.342259 GGCATGTGTTGTTAATTCGAAACTC 59.658 40.000 0.00 0.00 0.00 3.01
1732 14830 5.219633 GGCATGTGTTGTTAATTCGAAACT 58.780 37.500 0.00 0.00 0.00 2.66
1733 14831 4.979197 TGGCATGTGTTGTTAATTCGAAAC 59.021 37.500 0.00 0.00 0.00 2.78
1734 14832 5.188327 TGGCATGTGTTGTTAATTCGAAA 57.812 34.783 0.00 0.00 0.00 3.46
1735 14833 4.837896 TGGCATGTGTTGTTAATTCGAA 57.162 36.364 0.00 0.00 0.00 3.71
1736 14834 4.380339 CCATGGCATGTGTTGTTAATTCGA 60.380 41.667 24.80 0.00 0.00 3.71
1737 14835 3.858812 CCATGGCATGTGTTGTTAATTCG 59.141 43.478 24.80 2.20 0.00 3.34
1738 14836 5.070770 TCCATGGCATGTGTTGTTAATTC 57.929 39.130 24.80 0.00 0.00 2.17
1739 14837 5.680594 ATCCATGGCATGTGTTGTTAATT 57.319 34.783 24.80 0.00 0.00 1.40
1740 14838 6.550481 TCATATCCATGGCATGTGTTGTTAAT 59.450 34.615 24.80 8.26 32.61 1.40
1741 14839 5.890419 TCATATCCATGGCATGTGTTGTTAA 59.110 36.000 24.80 3.34 32.61 2.01
1742 14840 5.444176 TCATATCCATGGCATGTGTTGTTA 58.556 37.500 24.80 9.96 32.61 2.41
1743 14841 4.279982 TCATATCCATGGCATGTGTTGTT 58.720 39.130 24.80 8.20 32.61 2.83
1744 14842 3.900971 TCATATCCATGGCATGTGTTGT 58.099 40.909 24.80 9.13 32.61 3.32
1745 14843 5.708697 AGTATCATATCCATGGCATGTGTTG 59.291 40.000 24.80 16.08 32.61 3.33
1746 14844 5.884322 AGTATCATATCCATGGCATGTGTT 58.116 37.500 24.80 13.84 32.61 3.32
1747 14845 5.509832 AGTATCATATCCATGGCATGTGT 57.490 39.130 24.80 15.35 32.61 3.72
1748 14846 5.526479 GCTAGTATCATATCCATGGCATGTG 59.474 44.000 24.80 16.52 32.61 3.21
1749 14847 5.427806 AGCTAGTATCATATCCATGGCATGT 59.572 40.000 24.80 10.99 32.61 3.21
1750 14848 5.926663 AGCTAGTATCATATCCATGGCATG 58.073 41.667 20.56 20.56 32.61 4.06
1751 14849 6.042552 GGTAGCTAGTATCATATCCATGGCAT 59.957 42.308 6.96 4.38 32.61 4.40
1752 14850 5.363868 GGTAGCTAGTATCATATCCATGGCA 59.636 44.000 6.96 0.00 32.61 4.92
1753 14851 5.363868 TGGTAGCTAGTATCATATCCATGGC 59.636 44.000 6.96 0.00 32.61 4.40
1754 14852 6.836007 TCTGGTAGCTAGTATCATATCCATGG 59.164 42.308 4.97 4.97 32.61 3.66
1755 14853 7.888250 TCTGGTAGCTAGTATCATATCCATG 57.112 40.000 0.00 0.00 0.00 3.66
1756 14854 7.446931 CGATCTGGTAGCTAGTATCATATCCAT 59.553 40.741 0.00 0.00 26.40 3.41
1757 14855 6.768381 CGATCTGGTAGCTAGTATCATATCCA 59.232 42.308 0.00 0.00 26.40 3.41
1758 14856 6.993308 TCGATCTGGTAGCTAGTATCATATCC 59.007 42.308 0.00 0.00 26.40 2.59
1759 14857 8.615878 ATCGATCTGGTAGCTAGTATCATATC 57.384 38.462 0.00 0.00 0.00 1.63
1760 14858 7.663905 GGATCGATCTGGTAGCTAGTATCATAT 59.336 40.741 23.96 0.00 0.00 1.78
1761 14859 6.993308 GGATCGATCTGGTAGCTAGTATCATA 59.007 42.308 23.96 0.00 0.00 2.15
1762 14860 5.825679 GGATCGATCTGGTAGCTAGTATCAT 59.174 44.000 23.96 0.00 0.00 2.45
1763 14861 5.045505 AGGATCGATCTGGTAGCTAGTATCA 60.046 44.000 23.96 0.00 0.00 2.15
1764 14862 5.295787 CAGGATCGATCTGGTAGCTAGTATC 59.704 48.000 23.96 3.17 0.00 2.24
1765 14863 5.189928 CAGGATCGATCTGGTAGCTAGTAT 58.810 45.833 23.96 0.00 0.00 2.12
1766 14864 4.565861 CCAGGATCGATCTGGTAGCTAGTA 60.566 50.000 23.96 0.00 44.97 1.82
1767 14865 3.417101 CAGGATCGATCTGGTAGCTAGT 58.583 50.000 23.96 0.00 0.00 2.57
1768 14866 2.752354 CCAGGATCGATCTGGTAGCTAG 59.248 54.545 23.96 2.13 44.97 3.42
1769 14867 2.796557 CCAGGATCGATCTGGTAGCTA 58.203 52.381 23.96 0.00 44.97 3.32
1770 14868 1.626686 CCAGGATCGATCTGGTAGCT 58.373 55.000 23.96 9.35 44.97 3.32
1776 14874 3.268330 CATTATGCCCAGGATCGATCTG 58.732 50.000 23.96 18.43 0.00 2.90
1777 14875 2.355513 GCATTATGCCCAGGATCGATCT 60.356 50.000 23.96 8.31 37.42 2.75
1778 14876 2.012673 GCATTATGCCCAGGATCGATC 58.987 52.381 17.36 17.36 37.42 3.69
1779 14877 2.119801 GCATTATGCCCAGGATCGAT 57.880 50.000 5.80 0.00 37.42 3.59
1780 14878 3.631453 GCATTATGCCCAGGATCGA 57.369 52.632 5.80 0.00 37.42 3.59
1812 14910 6.436218 AGACAGTACATACATCTGTAACCACA 59.564 38.462 0.00 0.00 41.58 4.17
1813 14911 6.864342 AGACAGTACATACATCTGTAACCAC 58.136 40.000 0.00 0.00 41.58 4.16
1814 14912 6.096423 GGAGACAGTACATACATCTGTAACCA 59.904 42.308 0.00 0.00 41.58 3.67
1815 14913 6.096423 TGGAGACAGTACATACATCTGTAACC 59.904 42.308 0.00 0.00 41.58 2.85
1816 14914 6.973474 GTGGAGACAGTACATACATCTGTAAC 59.027 42.308 0.00 0.00 44.46 2.50
1817 14915 6.183360 CGTGGAGACAGTACATACATCTGTAA 60.183 42.308 0.00 0.00 44.46 2.41
1818 14916 5.296035 CGTGGAGACAGTACATACATCTGTA 59.704 44.000 0.00 0.00 44.46 2.74
1819 14917 4.096532 CGTGGAGACAGTACATACATCTGT 59.903 45.833 0.00 0.00 44.46 3.41
1820 14918 4.602006 CGTGGAGACAGTACATACATCTG 58.398 47.826 0.00 0.00 44.46 2.90
1821 14919 3.066900 GCGTGGAGACAGTACATACATCT 59.933 47.826 0.00 0.00 44.46 2.90
1822 14920 3.181490 TGCGTGGAGACAGTACATACATC 60.181 47.826 0.00 0.00 44.46 3.06
1823 14921 2.758423 TGCGTGGAGACAGTACATACAT 59.242 45.455 0.00 0.00 44.46 2.29
1824 14922 2.164338 TGCGTGGAGACAGTACATACA 58.836 47.619 0.00 0.00 44.46 2.29
1825 14923 2.933495 TGCGTGGAGACAGTACATAC 57.067 50.000 0.00 0.00 44.46 2.39
1826 14924 5.300792 TCATTATGCGTGGAGACAGTACATA 59.699 40.000 0.00 0.00 44.46 2.29
1827 14925 4.099419 TCATTATGCGTGGAGACAGTACAT 59.901 41.667 0.00 0.00 44.46 2.29
1828 14926 3.445805 TCATTATGCGTGGAGACAGTACA 59.554 43.478 0.00 0.00 44.46 2.90
1829 14927 4.041740 TCATTATGCGTGGAGACAGTAC 57.958 45.455 0.00 0.00 44.46 2.73
1830 14928 4.937201 ATCATTATGCGTGGAGACAGTA 57.063 40.909 0.00 0.00 44.46 2.74
1831 14929 3.827008 ATCATTATGCGTGGAGACAGT 57.173 42.857 0.00 0.00 44.46 3.55
1832 14930 6.347969 CCATTTATCATTATGCGTGGAGACAG 60.348 42.308 0.00 0.00 44.46 3.51
1833 14931 5.469760 CCATTTATCATTATGCGTGGAGACA 59.530 40.000 0.00 0.00 38.70 3.41
1834 14932 5.700832 TCCATTTATCATTATGCGTGGAGAC 59.299 40.000 0.00 0.00 31.39 3.36
1835 14933 5.863965 TCCATTTATCATTATGCGTGGAGA 58.136 37.500 0.00 0.00 31.39 3.71
1836 14934 6.748333 ATCCATTTATCATTATGCGTGGAG 57.252 37.500 0.00 0.00 37.86 3.86
1837 14935 8.100164 TCTTATCCATTTATCATTATGCGTGGA 58.900 33.333 0.00 0.00 38.70 4.02
1838 14936 8.267620 TCTTATCCATTTATCATTATGCGTGG 57.732 34.615 0.00 0.00 0.00 4.94
1873 14971 8.308931 CCATGGCAGCACAATTAAAGATATTAT 58.691 33.333 0.00 0.00 0.00 1.28
1878 14976 3.770933 ACCATGGCAGCACAATTAAAGAT 59.229 39.130 13.04 0.00 0.00 2.40
1879 14977 3.164268 ACCATGGCAGCACAATTAAAGA 58.836 40.909 13.04 0.00 0.00 2.52
1880 14978 3.598019 ACCATGGCAGCACAATTAAAG 57.402 42.857 13.04 0.00 0.00 1.85
1881 14979 4.348863 AAACCATGGCAGCACAATTAAA 57.651 36.364 13.04 0.00 0.00 1.52
1882 14980 4.348863 AAAACCATGGCAGCACAATTAA 57.651 36.364 13.04 0.00 0.00 1.40
1883 14981 4.063689 CAAAAACCATGGCAGCACAATTA 58.936 39.130 13.04 0.00 0.00 1.40
1884 14982 2.879646 CAAAAACCATGGCAGCACAATT 59.120 40.909 13.04 0.00 0.00 2.32
1886 14984 1.950828 CAAAAACCATGGCAGCACAA 58.049 45.000 13.04 0.00 0.00 3.33
1888 14986 1.229975 GGCAAAAACCATGGCAGCAC 61.230 55.000 13.04 0.00 42.45 4.40
1889 14987 1.071128 GGCAAAAACCATGGCAGCA 59.929 52.632 13.04 0.00 42.45 4.41
1890 14988 0.250424 AAGGCAAAAACCATGGCAGC 60.250 50.000 13.04 8.75 45.08 5.25
1891 14989 3.264104 CATAAGGCAAAAACCATGGCAG 58.736 45.455 13.04 0.00 45.08 4.85
1892 14990 2.027377 CCATAAGGCAAAAACCATGGCA 60.027 45.455 13.04 0.00 45.08 4.92
1893 14991 2.631267 CCATAAGGCAAAAACCATGGC 58.369 47.619 13.04 0.00 43.17 4.40
1894 14992 2.836981 TCCCATAAGGCAAAAACCATGG 59.163 45.455 11.19 11.19 34.47 3.66
1895 14993 3.260380 TGTCCCATAAGGCAAAAACCATG 59.740 43.478 0.00 0.00 34.51 3.66
1896 14994 3.515562 TGTCCCATAAGGCAAAAACCAT 58.484 40.909 0.00 0.00 34.51 3.55
1897 14995 2.964209 TGTCCCATAAGGCAAAAACCA 58.036 42.857 0.00 0.00 34.51 3.67
1898 14996 4.252878 CATTGTCCCATAAGGCAAAAACC 58.747 43.478 0.00 0.00 35.94 3.27
1899 14997 3.684305 GCATTGTCCCATAAGGCAAAAAC 59.316 43.478 0.00 0.00 35.94 2.43
1900 14998 3.326006 TGCATTGTCCCATAAGGCAAAAA 59.674 39.130 0.00 0.00 41.19 1.94
1901 14999 2.902486 TGCATTGTCCCATAAGGCAAAA 59.098 40.909 0.00 0.00 41.19 2.44
1902 15000 2.496871 CTGCATTGTCCCATAAGGCAAA 59.503 45.455 0.00 0.00 43.12 3.68
1903 15001 2.101783 CTGCATTGTCCCATAAGGCAA 58.898 47.619 0.00 0.00 43.12 4.52
1904 15002 1.005805 ACTGCATTGTCCCATAAGGCA 59.994 47.619 0.00 0.00 41.78 4.75
1905 15003 1.767759 ACTGCATTGTCCCATAAGGC 58.232 50.000 0.00 0.00 35.58 4.35
1906 15004 5.380043 AGATAACTGCATTGTCCCATAAGG 58.620 41.667 0.00 0.00 0.00 2.69
1907 15005 7.663081 ACATAGATAACTGCATTGTCCCATAAG 59.337 37.037 0.00 0.00 0.00 1.73
1908 15006 7.517320 ACATAGATAACTGCATTGTCCCATAA 58.483 34.615 0.00 0.00 0.00 1.90
1962 15061 7.041635 TCATGCTTGTCTTTTCTTGATGAAA 57.958 32.000 0.00 0.00 42.33 2.69
1979 15078 9.710900 TGATTATGTAATAACGAGATCATGCTT 57.289 29.630 0.00 0.00 42.43 3.91
1985 15084 8.935844 TGCCAATGATTATGTAATAACGAGATC 58.064 33.333 0.00 0.00 42.43 2.75
2017 15117 2.654987 CGAGGCAAGAAAAAGCTGTTC 58.345 47.619 0.00 0.00 0.00 3.18
2039 15139 7.726291 TGCCTAGTTAAGCATCTTATCTACTCT 59.274 37.037 0.00 0.00 33.08 3.24
2081 15181 8.561536 TGTCCATTCTTGGGATAATCTTAGTA 57.438 34.615 0.00 0.00 43.81 1.82
2178 15457 1.270465 CGCATCCATGTGAGCTCCATA 60.270 52.381 12.15 1.06 40.61 2.74
2206 15509 0.476771 TGGGTGTTTGAAGAGGGGTC 59.523 55.000 0.00 0.00 0.00 4.46
2320 15623 7.102346 AGAGATGAGTTGATGGTTAGTCTTTG 58.898 38.462 0.00 0.00 0.00 2.77
2356 15659 6.858478 CGACGATTAATCTTGCTGAAGATCTA 59.142 38.462 13.45 0.00 46.45 1.98
2429 15732 2.906389 TCACCTGTACTCTGCCAAGATT 59.094 45.455 0.00 0.00 0.00 2.40
2477 15780 1.262950 CACAATTTTGTCTCGTCGCCA 59.737 47.619 0.00 0.00 39.91 5.69
2512 15815 0.249784 CATGCAGAGATCACTCGGGG 60.250 60.000 0.00 0.00 46.64 5.73
2516 15819 6.511444 GCTTTATCAACATGCAGAGATCACTC 60.511 42.308 0.00 0.00 42.90 3.51
2627 15930 1.980765 AGAATGCACAAGGTCCTCTCA 59.019 47.619 0.00 0.00 0.00 3.27
2682 15985 3.873361 ACACCAGATGCGTCTTCATATTG 59.127 43.478 5.46 0.19 30.42 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.