Multiple sequence alignment - TraesCS6A01G097400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G097400 chr6A 100.000 3750 0 0 1 3750 64508154 64504405 0.000000e+00 6926.0
1 TraesCS6A01G097400 chr6A 95.806 310 12 1 2815 3124 181910153 181909845 2.010000e-137 499.0
2 TraesCS6A01G097400 chr6A 95.455 308 13 1 2816 3123 485754923 485754617 1.210000e-134 490.0
3 TraesCS6A01G097400 chr6D 93.545 2231 96 24 546 2768 50671527 50673717 0.000000e+00 3278.0
4 TraesCS6A01G097400 chr6D 84.380 589 52 18 3173 3750 50673847 50674406 3.290000e-150 542.0
5 TraesCS6A01G097400 chr6B 92.226 2264 98 30 546 2768 120804808 120802582 0.000000e+00 3134.0
6 TraesCS6A01G097400 chr6B 90.924 1785 133 22 991 2772 10926246 10928004 0.000000e+00 2372.0
7 TraesCS6A01G097400 chr6B 89.950 398 32 5 3173 3565 120802452 120802058 1.200000e-139 507.0
8 TraesCS6A01G097400 chr6B 100.000 34 0 0 2781 2814 10928033 10928066 3.130000e-06 63.9
9 TraesCS6A01G097400 chr6B 100.000 30 0 0 3141 3170 120802502 120802473 5.230000e-04 56.5
10 TraesCS6A01G097400 chr5A 85.948 918 122 5 1001 1915 708743157 708744070 0.000000e+00 974.0
11 TraesCS6A01G097400 chr4B 85.730 918 124 5 1001 1915 670799118 670798205 0.000000e+00 963.0
12 TraesCS6A01G097400 chr4B 83.566 645 100 1 2091 2735 670797464 670796826 1.930000e-167 599.0
13 TraesCS6A01G097400 chrUn 85.559 921 126 6 1001 1915 28574625 28573706 0.000000e+00 957.0
14 TraesCS6A01G097400 chrUn 82.946 645 104 1 2091 2735 28573099 28572461 9.030000e-161 577.0
15 TraesCS6A01G097400 chr2A 88.768 552 53 7 1 547 459549001 459549548 0.000000e+00 667.0
16 TraesCS6A01G097400 chr2A 92.966 327 22 1 2801 3127 692706167 692706492 3.390000e-130 475.0
17 TraesCS6A01G097400 chr1D 87.269 542 62 7 8 547 479536257 479536793 2.480000e-171 612.0
18 TraesCS6A01G097400 chr1D 89.796 49 4 1 2260 2308 492534719 492534672 1.120000e-05 62.1
19 TraesCS6A01G097400 chr2B 86.456 539 67 6 7 541 198516169 198515633 1.500000e-163 586.0
20 TraesCS6A01G097400 chr2B 95.130 308 13 2 2815 3122 58998387 58998082 5.630000e-133 484.0
21 TraesCS6A01G097400 chr2B 83.109 521 80 7 1034 1551 772821789 772822304 5.670000e-128 468.0
22 TraesCS6A01G097400 chr3D 85.714 553 67 9 6 552 588201390 588200844 1.170000e-159 573.0
23 TraesCS6A01G097400 chr7A 85.106 564 59 13 1 551 634327842 634327291 1.520000e-153 553.0
24 TraesCS6A01G097400 chr7A 95.752 306 13 0 2815 3120 120755544 120755239 9.360000e-136 494.0
25 TraesCS6A01G097400 chr7A 95.410 305 13 1 2815 3119 727101582 727101279 5.630000e-133 484.0
26 TraesCS6A01G097400 chr7A 94.498 309 15 2 2812 3119 633395987 633396294 3.390000e-130 475.0
27 TraesCS6A01G097400 chr7A 94.481 308 16 1 2813 3120 8660474 8660168 1.220000e-129 473.0
28 TraesCS6A01G097400 chr7A 93.631 314 17 3 2806 3119 274393383 274393073 2.040000e-127 466.0
29 TraesCS6A01G097400 chr7A 94.098 305 18 0 2816 3120 700526424 700526120 7.340000e-127 464.0
30 TraesCS6A01G097400 chr7A 94.098 305 17 1 2815 3119 727118288 727117985 2.640000e-126 462.0
31 TraesCS6A01G097400 chr5D 84.892 556 72 10 1 548 454726416 454725865 5.470000e-153 551.0
32 TraesCS6A01G097400 chr5D 84.712 556 75 7 6 555 481520064 481520615 7.080000e-152 547.0
33 TraesCS6A01G097400 chr5D 85.045 555 57 14 6 547 375464139 375464680 3.290000e-150 542.0
34 TraesCS6A01G097400 chr5B 84.727 550 76 7 6 552 674426825 674426281 9.160000e-151 544.0
35 TraesCS6A01G097400 chr5B 95.752 306 13 0 2814 3119 674376777 674376472 9.360000e-136 494.0
36 TraesCS6A01G097400 chr1A 95.806 310 12 1 2815 3124 537536745 537536437 2.010000e-137 499.0
37 TraesCS6A01G097400 chr1A 94.595 37 2 0 2264 2300 590996117 590996081 1.450000e-04 58.4
38 TraesCS6A01G097400 chr7B 95.484 310 14 0 2816 3125 717329211 717328902 2.600000e-136 496.0
39 TraesCS6A01G097400 chr7B 73.191 235 55 8 2091 2321 556457054 556456824 1.120000e-10 78.7
40 TraesCS6A01G097400 chr3B 95.455 308 13 1 2815 3122 623667279 623667585 1.210000e-134 490.0
41 TraesCS6A01G097400 chr3B 92.216 334 22 4 2791 3121 64504150 64503818 1.580000e-128 470.0
42 TraesCS6A01G097400 chr4A 94.620 316 16 1 2815 3130 460894356 460894042 4.350000e-134 488.0
43 TraesCS6A01G097400 chr3A 94.888 313 15 1 2816 3128 717621307 717620996 4.350000e-134 488.0
44 TraesCS6A01G097400 chr2D 83.108 444 63 10 1060 1494 629866392 629866832 9.760000e-106 394.0
45 TraesCS6A01G097400 chr7D 75.000 236 49 10 2091 2321 522503166 522502936 2.380000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G097400 chr6A 64504405 64508154 3749 True 6926.00 6926 100.000000 1 3750 1 chr6A.!!$R1 3749
1 TraesCS6A01G097400 chr6D 50671527 50674406 2879 False 1910.00 3278 88.962500 546 3750 2 chr6D.!!$F1 3204
2 TraesCS6A01G097400 chr6B 120802058 120804808 2750 True 1232.50 3134 94.058667 546 3565 3 chr6B.!!$R1 3019
3 TraesCS6A01G097400 chr6B 10926246 10928066 1820 False 1217.95 2372 95.462000 991 2814 2 chr6B.!!$F1 1823
4 TraesCS6A01G097400 chr5A 708743157 708744070 913 False 974.00 974 85.948000 1001 1915 1 chr5A.!!$F1 914
5 TraesCS6A01G097400 chr4B 670796826 670799118 2292 True 781.00 963 84.648000 1001 2735 2 chr4B.!!$R1 1734
6 TraesCS6A01G097400 chrUn 28572461 28574625 2164 True 767.00 957 84.252500 1001 2735 2 chrUn.!!$R1 1734
7 TraesCS6A01G097400 chr2A 459549001 459549548 547 False 667.00 667 88.768000 1 547 1 chr2A.!!$F1 546
8 TraesCS6A01G097400 chr1D 479536257 479536793 536 False 612.00 612 87.269000 8 547 1 chr1D.!!$F1 539
9 TraesCS6A01G097400 chr2B 198515633 198516169 536 True 586.00 586 86.456000 7 541 1 chr2B.!!$R2 534
10 TraesCS6A01G097400 chr2B 772821789 772822304 515 False 468.00 468 83.109000 1034 1551 1 chr2B.!!$F1 517
11 TraesCS6A01G097400 chr3D 588200844 588201390 546 True 573.00 573 85.714000 6 552 1 chr3D.!!$R1 546
12 TraesCS6A01G097400 chr7A 634327291 634327842 551 True 553.00 553 85.106000 1 551 1 chr7A.!!$R4 550
13 TraesCS6A01G097400 chr5D 454725865 454726416 551 True 551.00 551 84.892000 1 548 1 chr5D.!!$R1 547
14 TraesCS6A01G097400 chr5D 481520064 481520615 551 False 547.00 547 84.712000 6 555 1 chr5D.!!$F2 549
15 TraesCS6A01G097400 chr5D 375464139 375464680 541 False 542.00 542 85.045000 6 547 1 chr5D.!!$F1 541
16 TraesCS6A01G097400 chr5B 674426281 674426825 544 True 544.00 544 84.727000 6 552 1 chr5B.!!$R2 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 172 0.034896 CTTAGTCGTGTGGGGTTGCT 59.965 55.0 0.0 0.0 0.00 3.91 F
975 1025 0.324285 AGCAGAGAGAGGCAACAAGG 59.676 55.0 0.0 0.0 41.41 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1071 1.065928 GAGGGCGATGGACACGTAG 59.934 63.158 0.0 0.0 0.00 3.51 R
2964 3659 0.179169 GAAGTCACCGTAGACGCCTC 60.179 60.000 0.0 0.0 43.24 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 83 2.181525 GTTTGCATCGGCGGCATT 59.818 55.556 11.46 0.00 45.35 3.56
110 113 0.697658 TGGATCATGTGCTGGGTTCA 59.302 50.000 0.00 0.00 0.00 3.18
124 127 1.014352 GGTTCATGGTACGTGGATGC 58.986 55.000 0.00 0.00 0.00 3.91
169 172 0.034896 CTTAGTCGTGTGGGGTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
171 174 1.563924 TAGTCGTGTGGGGTTGCTAT 58.436 50.000 0.00 0.00 0.00 2.97
217 220 1.463674 GTGTTGCCCCGATCTGATTT 58.536 50.000 0.00 0.00 0.00 2.17
299 308 2.885861 GATGGAGCCACGTCGAGT 59.114 61.111 0.00 0.00 0.00 4.18
308 317 1.016627 CCACGTCGAGTTCGGGTATA 58.983 55.000 0.00 0.00 40.29 1.47
386 398 1.598130 GGCGTTGGTGTCAAGCTCT 60.598 57.895 0.00 0.00 32.92 4.09
392 404 1.131638 TGGTGTCAAGCTCTGAGGTT 58.868 50.000 15.86 15.86 36.17 3.50
409 421 5.496556 TGAGGTTTTCTTCAGTCTTGTTCA 58.503 37.500 0.00 0.00 32.21 3.18
448 461 2.564947 TGGTGTTTCTTTGTGCAAAGGT 59.435 40.909 20.39 0.00 45.80 3.50
449 462 3.186909 GGTGTTTCTTTGTGCAAAGGTC 58.813 45.455 20.39 13.03 45.80 3.85
450 463 3.119137 GGTGTTTCTTTGTGCAAAGGTCT 60.119 43.478 20.39 0.00 45.80 3.85
460 473 2.813754 GTGCAAAGGTCTACATTCTGCA 59.186 45.455 10.85 10.85 36.06 4.41
503 516 4.966366 GTCGGTATGTACGTGACTTGTATC 59.034 45.833 0.00 0.00 32.74 2.24
572 588 4.762289 AGTAAAGAGGGATAGGCAACAG 57.238 45.455 0.00 0.00 41.41 3.16
573 589 4.104831 AGTAAAGAGGGATAGGCAACAGT 58.895 43.478 0.00 0.00 41.41 3.55
606 624 8.196802 TCGAAACTATGATGTGGTTTGATTAG 57.803 34.615 0.00 0.00 41.01 1.73
617 635 7.433708 TGTGGTTTGATTAGTGTATCACTTG 57.566 36.000 7.70 0.00 42.59 3.16
705 739 2.486472 AGAGCAACAACCAGGAGATG 57.514 50.000 0.00 0.00 0.00 2.90
734 772 9.750882 CAAATTCTGCATGATATATGAACGTAG 57.249 33.333 0.00 0.00 0.00 3.51
748 786 1.446907 ACGTAGAAGGTGACGATCGT 58.553 50.000 22.97 22.97 41.60 3.73
749 787 1.396301 ACGTAGAAGGTGACGATCGTC 59.604 52.381 35.46 35.46 41.60 4.20
772 811 3.712907 GCTTGTCGGTGGGGGCTA 61.713 66.667 0.00 0.00 0.00 3.93
773 812 2.267961 CTTGTCGGTGGGGGCTAC 59.732 66.667 0.00 0.00 0.00 3.58
860 899 5.229423 TCATGGTTAGATGCTTTTTGTTGC 58.771 37.500 0.00 0.00 0.00 4.17
883 925 0.873312 CATCCGGTCAGATCACGCTG 60.873 60.000 0.00 0.00 37.24 5.18
884 926 2.021068 ATCCGGTCAGATCACGCTGG 62.021 60.000 0.00 0.00 36.55 4.85
904 948 2.823154 GGTGGCACTATAAAAAGCACCA 59.177 45.455 18.45 0.00 32.33 4.17
905 949 3.366985 GGTGGCACTATAAAAAGCACCAC 60.367 47.826 18.45 0.00 41.61 4.16
906 950 3.254657 GTGGCACTATAAAAAGCACCACA 59.745 43.478 11.13 0.00 41.80 4.17
907 951 4.082245 GTGGCACTATAAAAAGCACCACAT 60.082 41.667 11.13 0.00 41.80 3.21
947 997 6.071728 CCATAAACCATTCCATATCTCAAGCC 60.072 42.308 0.00 0.00 0.00 4.35
951 1001 3.330110 CCATTCCATATCTCAAGCCCTCT 59.670 47.826 0.00 0.00 0.00 3.69
961 1011 1.288037 TCAAGCCCTCTACCTAGCAGA 59.712 52.381 0.00 0.00 0.00 4.26
962 1012 1.686052 CAAGCCCTCTACCTAGCAGAG 59.314 57.143 11.02 11.02 39.44 3.35
963 1013 1.227249 AGCCCTCTACCTAGCAGAGA 58.773 55.000 17.04 4.34 41.80 3.10
964 1014 1.144913 AGCCCTCTACCTAGCAGAGAG 59.855 57.143 17.04 11.94 41.80 3.20
965 1015 1.144093 GCCCTCTACCTAGCAGAGAGA 59.856 57.143 17.04 0.78 41.80 3.10
967 1017 3.140325 CCTCTACCTAGCAGAGAGAGG 57.860 57.143 17.04 12.60 45.46 3.69
968 1018 2.504367 CTCTACCTAGCAGAGAGAGGC 58.496 57.143 12.15 0.00 41.80 4.70
969 1019 1.847088 TCTACCTAGCAGAGAGAGGCA 59.153 52.381 0.00 0.00 33.28 4.75
970 1020 2.242452 TCTACCTAGCAGAGAGAGGCAA 59.758 50.000 0.00 0.00 33.28 4.52
975 1025 0.324285 AGCAGAGAGAGGCAACAAGG 59.676 55.000 0.00 0.00 41.41 3.61
977 1027 1.675415 GCAGAGAGAGGCAACAAGGAG 60.675 57.143 0.00 0.00 41.41 3.69
979 1029 2.500910 CAGAGAGAGGCAACAAGGAGAT 59.499 50.000 0.00 0.00 41.41 2.75
983 1033 5.070313 AGAGAGAGGCAACAAGGAGATAATC 59.930 44.000 0.00 0.00 41.41 1.75
984 1034 4.968080 AGAGAGGCAACAAGGAGATAATCT 59.032 41.667 0.00 0.00 41.41 2.40
986 1036 6.613271 AGAGAGGCAACAAGGAGATAATCTAA 59.387 38.462 0.00 0.00 41.41 2.10
987 1037 7.292120 AGAGAGGCAACAAGGAGATAATCTAAT 59.708 37.037 0.00 0.00 41.41 1.73
988 1038 7.449247 AGAGGCAACAAGGAGATAATCTAATC 58.551 38.462 0.00 0.00 41.41 1.75
989 1039 6.226787 AGGCAACAAGGAGATAATCTAATCG 58.773 40.000 0.00 0.00 41.41 3.34
1020 1071 0.687354 TGGAGCTCAACCTTGTCTCC 59.313 55.000 17.19 15.81 43.00 3.71
1052 1103 2.776913 CCCTCTTCGTCCTCTCGGC 61.777 68.421 0.00 0.00 0.00 5.54
1290 1349 2.432628 CTCACCTCCAACGACGCC 60.433 66.667 0.00 0.00 0.00 5.68
1362 1421 3.263503 CTCCGACGTGACCTTCGCA 62.264 63.158 0.00 0.00 33.78 5.10
1734 1796 2.884685 CTGAAGAGCTGCCTCGCG 60.885 66.667 0.00 0.00 43.05 5.87
1906 1968 0.323629 CAAAGCCCTCGTCCTGGTAA 59.676 55.000 0.00 0.00 0.00 2.85
1981 2052 4.584743 TGGATAGAGACATGCACTAACGAT 59.415 41.667 0.00 0.00 0.00 3.73
1983 2054 6.264518 TGGATAGAGACATGCACTAACGATTA 59.735 38.462 0.00 0.00 0.00 1.75
1984 2055 7.145985 GGATAGAGACATGCACTAACGATTAA 58.854 38.462 0.00 0.00 0.00 1.40
1985 2056 7.327275 GGATAGAGACATGCACTAACGATTAAG 59.673 40.741 0.00 0.00 0.00 1.85
2001 2072 7.484035 ACGATTAAGGAATCATCTTTGTAGC 57.516 36.000 0.00 0.00 41.48 3.58
2002 2073 7.275920 ACGATTAAGGAATCATCTTTGTAGCT 58.724 34.615 0.00 0.00 41.48 3.32
2003 2074 7.439655 ACGATTAAGGAATCATCTTTGTAGCTC 59.560 37.037 0.00 0.00 41.48 4.09
2005 2076 5.441718 AAGGAATCATCTTTGTAGCTCCA 57.558 39.130 0.00 0.00 0.00 3.86
2006 2077 5.441718 AGGAATCATCTTTGTAGCTCCAA 57.558 39.130 0.00 0.00 0.00 3.53
2007 2078 6.011122 AGGAATCATCTTTGTAGCTCCAAT 57.989 37.500 0.00 0.00 0.00 3.16
2010 2226 8.223330 AGGAATCATCTTTGTAGCTCCAATATT 58.777 33.333 0.00 0.00 0.00 1.28
2071 2436 7.658982 TCTGATCTGCTCACCAATATTATTCAC 59.341 37.037 0.00 0.00 0.00 3.18
2074 2439 9.664332 GATCTGCTCACCAATATTATTCACTAT 57.336 33.333 0.00 0.00 0.00 2.12
2075 2440 8.837788 TCTGCTCACCAATATTATTCACTATG 57.162 34.615 0.00 0.00 0.00 2.23
2281 2956 1.493950 GCGCCATCATCAAGGAGACG 61.494 60.000 0.00 0.00 0.00 4.18
2725 3400 0.505655 GCGACGTGTACCAGTTCAAC 59.494 55.000 0.00 0.00 0.00 3.18
2815 3510 6.992063 ACAATGCAAATAAGAGAGTAGGTG 57.008 37.500 0.00 0.00 0.00 4.00
2816 3511 5.355350 ACAATGCAAATAAGAGAGTAGGTGC 59.645 40.000 0.00 0.00 0.00 5.01
2817 3512 3.521560 TGCAAATAAGAGAGTAGGTGCG 58.478 45.455 0.00 0.00 33.48 5.34
2818 3513 3.194755 TGCAAATAAGAGAGTAGGTGCGA 59.805 43.478 0.00 0.00 33.48 5.10
2819 3514 4.181578 GCAAATAAGAGAGTAGGTGCGAA 58.818 43.478 0.00 0.00 0.00 4.70
2820 3515 4.811557 GCAAATAAGAGAGTAGGTGCGAAT 59.188 41.667 0.00 0.00 0.00 3.34
2821 3516 5.050702 GCAAATAAGAGAGTAGGTGCGAATC 60.051 44.000 0.00 0.00 0.00 2.52
2822 3517 5.854010 AATAAGAGAGTAGGTGCGAATCA 57.146 39.130 0.00 0.00 0.00 2.57
2823 3518 5.854010 ATAAGAGAGTAGGTGCGAATCAA 57.146 39.130 0.00 0.00 0.00 2.57
2824 3519 3.512033 AGAGAGTAGGTGCGAATCAAC 57.488 47.619 0.00 0.00 0.00 3.18
2825 3520 2.166664 AGAGAGTAGGTGCGAATCAACC 59.833 50.000 0.00 0.00 30.95 3.77
2826 3521 2.166664 GAGAGTAGGTGCGAATCAACCT 59.833 50.000 9.26 9.26 36.45 3.50
2827 3522 2.093973 AGAGTAGGTGCGAATCAACCTG 60.094 50.000 13.20 0.00 34.06 4.00
2828 3523 1.623811 AGTAGGTGCGAATCAACCTGT 59.376 47.619 13.20 0.51 34.06 4.00
2829 3524 1.732259 GTAGGTGCGAATCAACCTGTG 59.268 52.381 13.20 0.00 34.06 3.66
2830 3525 0.606401 AGGTGCGAATCAACCTGTGG 60.606 55.000 4.04 0.00 30.95 4.17
2831 3526 0.889186 GGTGCGAATCAACCTGTGGT 60.889 55.000 0.00 0.00 37.65 4.16
2832 3527 1.609580 GGTGCGAATCAACCTGTGGTA 60.610 52.381 0.00 0.00 33.12 3.25
2833 3528 1.732259 GTGCGAATCAACCTGTGGTAG 59.268 52.381 0.00 0.00 33.12 3.18
2834 3529 1.621317 TGCGAATCAACCTGTGGTAGA 59.379 47.619 0.00 0.00 33.12 2.59
2835 3530 2.271800 GCGAATCAACCTGTGGTAGAG 58.728 52.381 0.00 0.00 33.12 2.43
2836 3531 2.353803 GCGAATCAACCTGTGGTAGAGT 60.354 50.000 0.00 0.00 33.12 3.24
2837 3532 3.864921 GCGAATCAACCTGTGGTAGAGTT 60.865 47.826 0.00 0.00 33.12 3.01
2838 3533 3.679980 CGAATCAACCTGTGGTAGAGTTG 59.320 47.826 0.00 0.00 38.16 3.16
2839 3534 3.703001 ATCAACCTGTGGTAGAGTTGG 57.297 47.619 0.00 0.00 37.77 3.77
2840 3535 2.404559 TCAACCTGTGGTAGAGTTGGT 58.595 47.619 0.00 0.00 37.77 3.67
2841 3536 2.775384 TCAACCTGTGGTAGAGTTGGTT 59.225 45.455 0.00 0.00 37.77 3.67
2842 3537 3.968649 TCAACCTGTGGTAGAGTTGGTTA 59.031 43.478 0.00 0.00 37.77 2.85
2843 3538 4.039973 TCAACCTGTGGTAGAGTTGGTTAG 59.960 45.833 0.00 0.00 37.77 2.34
2844 3539 2.904434 ACCTGTGGTAGAGTTGGTTAGG 59.096 50.000 0.00 0.00 32.11 2.69
2845 3540 2.904434 CCTGTGGTAGAGTTGGTTAGGT 59.096 50.000 0.00 0.00 0.00 3.08
2846 3541 3.306780 CCTGTGGTAGAGTTGGTTAGGTG 60.307 52.174 0.00 0.00 0.00 4.00
2847 3542 3.576982 CTGTGGTAGAGTTGGTTAGGTGA 59.423 47.826 0.00 0.00 0.00 4.02
2848 3543 3.968649 TGTGGTAGAGTTGGTTAGGTGAA 59.031 43.478 0.00 0.00 0.00 3.18
2849 3544 4.202284 TGTGGTAGAGTTGGTTAGGTGAAC 60.202 45.833 0.00 0.00 37.31 3.18
2850 3545 3.968649 TGGTAGAGTTGGTTAGGTGAACA 59.031 43.478 0.00 0.00 40.09 3.18
2851 3546 4.039973 TGGTAGAGTTGGTTAGGTGAACAG 59.960 45.833 0.00 0.00 40.09 3.16
2852 3547 4.040095 GGTAGAGTTGGTTAGGTGAACAGT 59.960 45.833 0.00 0.00 40.09 3.55
2853 3548 4.073293 AGAGTTGGTTAGGTGAACAGTG 57.927 45.455 0.00 0.00 40.09 3.66
2854 3549 3.139077 GAGTTGGTTAGGTGAACAGTGG 58.861 50.000 0.00 0.00 40.09 4.00
2855 3550 2.508300 AGTTGGTTAGGTGAACAGTGGT 59.492 45.455 0.00 0.00 40.09 4.16
2856 3551 3.712733 AGTTGGTTAGGTGAACAGTGGTA 59.287 43.478 0.00 0.00 40.09 3.25
2857 3552 4.349930 AGTTGGTTAGGTGAACAGTGGTAT 59.650 41.667 0.00 0.00 40.09 2.73
2858 3553 4.546829 TGGTTAGGTGAACAGTGGTATC 57.453 45.455 0.00 0.00 40.09 2.24
2859 3554 3.262405 TGGTTAGGTGAACAGTGGTATCC 59.738 47.826 0.00 0.00 40.09 2.59
2860 3555 3.370209 GGTTAGGTGAACAGTGGTATCCC 60.370 52.174 0.00 0.00 40.09 3.85
2861 3556 1.286248 AGGTGAACAGTGGTATCCCC 58.714 55.000 0.00 0.00 0.00 4.81
2862 3557 0.988832 GGTGAACAGTGGTATCCCCA 59.011 55.000 0.00 0.00 42.51 4.96
2863 3558 7.271713 GTTAGGTGAACAGTGGTATCCCCAA 62.272 48.000 0.00 0.00 40.64 4.12
2872 3567 2.701551 TGGTATCCCCAACCTATCAGG 58.298 52.381 0.00 0.00 41.50 3.86
2873 3568 1.985895 GGTATCCCCAACCTATCAGGG 59.014 57.143 0.00 0.00 40.58 4.45
2874 3569 2.699281 GGTATCCCCAACCTATCAGGGT 60.699 54.545 0.00 0.00 40.58 4.34
2876 3571 2.068831 TCCCCAACCTATCAGGGTTT 57.931 50.000 0.00 0.00 46.21 3.27
2877 3572 3.223940 TCCCCAACCTATCAGGGTTTA 57.776 47.619 0.00 0.00 46.21 2.01
2878 3573 3.543661 TCCCCAACCTATCAGGGTTTAA 58.456 45.455 0.00 0.00 46.21 1.52
2879 3574 3.924072 TCCCCAACCTATCAGGGTTTAAA 59.076 43.478 0.00 0.00 46.21 1.52
2880 3575 4.546605 TCCCCAACCTATCAGGGTTTAAAT 59.453 41.667 0.00 0.00 46.21 1.40
2881 3576 4.893524 CCCCAACCTATCAGGGTTTAAATC 59.106 45.833 0.00 0.00 46.21 2.17
2882 3577 4.893524 CCCAACCTATCAGGGTTTAAATCC 59.106 45.833 9.68 9.68 46.21 3.01
2883 3578 5.340863 CCCAACCTATCAGGGTTTAAATCCT 60.341 44.000 14.63 14.63 46.21 3.24
2890 3585 3.087370 AGGGTTTAAATCCTGGTGCTC 57.913 47.619 19.53 0.00 38.36 4.26
2891 3586 1.743394 GGGTTTAAATCCTGGTGCTCG 59.257 52.381 10.45 0.00 0.00 5.03
2892 3587 1.132453 GGTTTAAATCCTGGTGCTCGC 59.868 52.381 0.00 0.00 0.00 5.03
2893 3588 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
2894 3589 2.418368 TTAAATCCTGGTGCTCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
2895 3590 2.418368 TAAATCCTGGTGCTCGCATT 57.582 45.000 0.00 0.00 0.00 3.56
2896 3591 2.418368 AAATCCTGGTGCTCGCATTA 57.582 45.000 0.00 0.00 0.00 1.90
2897 3592 2.645838 AATCCTGGTGCTCGCATTAT 57.354 45.000 0.00 0.00 0.00 1.28
2898 3593 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2899 3594 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
2900 3595 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
2901 3596 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
2902 3597 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
2903 3598 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
2904 3599 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
2905 3600 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
2906 3601 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2907 3602 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
2908 3603 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2909 3604 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
2910 3605 7.141363 GTGCTCGCATTATTTCTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
2911 3606 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
2912 3607 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
2913 3608 7.059945 GCTCGCATTATTTCTGGATTTATTTCG 59.940 37.037 0.00 0.00 0.00 3.46
2914 3609 7.359595 TCGCATTATTTCTGGATTTATTTCGG 58.640 34.615 0.00 0.00 0.00 4.30
2915 3610 6.582295 CGCATTATTTCTGGATTTATTTCGGG 59.418 38.462 0.00 0.00 0.00 5.14
2916 3611 7.521423 CGCATTATTTCTGGATTTATTTCGGGA 60.521 37.037 0.00 0.00 0.00 5.14
2917 3612 8.306761 GCATTATTTCTGGATTTATTTCGGGAT 58.693 33.333 0.00 0.00 0.00 3.85
2921 3616 6.709018 TTCTGGATTTATTTCGGGATTTCC 57.291 37.500 0.00 0.00 0.00 3.13
2930 3625 3.946907 GGGATTTCCGGCGATACG 58.053 61.111 9.30 0.00 36.71 3.06
2942 3637 3.733236 CGATACGCTTTCAGTGGGA 57.267 52.632 0.00 0.00 0.00 4.37
2943 3638 1.560923 CGATACGCTTTCAGTGGGAG 58.439 55.000 0.00 0.00 0.00 4.30
2944 3639 1.802880 CGATACGCTTTCAGTGGGAGG 60.803 57.143 0.00 0.00 0.00 4.30
2945 3640 1.480954 GATACGCTTTCAGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
2946 3641 0.895530 TACGCTTTCAGTGGGAGGAG 59.104 55.000 0.00 0.00 0.00 3.69
2947 3642 0.832135 ACGCTTTCAGTGGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
2948 3643 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2949 3644 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2950 3645 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2951 3646 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2952 3647 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2979 3674 2.359107 ACGAGGCGTCTACGGTGA 60.359 61.111 12.25 0.00 33.69 4.02
2980 3675 2.099831 CGAGGCGTCTACGGTGAC 59.900 66.667 4.69 0.00 40.23 3.67
2981 3676 2.396955 CGAGGCGTCTACGGTGACT 61.397 63.158 4.69 0.00 40.23 3.41
2982 3677 1.881602 GAGGCGTCTACGGTGACTT 59.118 57.895 4.49 0.00 40.23 3.01
2983 3678 0.179169 GAGGCGTCTACGGTGACTTC 60.179 60.000 4.49 0.00 40.23 3.01
2984 3679 1.513586 GGCGTCTACGGTGACTTCG 60.514 63.158 4.49 0.00 40.23 3.79
2985 3680 1.208614 GCGTCTACGGTGACTTCGT 59.791 57.895 4.49 0.00 43.64 3.85
2986 3681 0.443869 GCGTCTACGGTGACTTCGTA 59.556 55.000 4.49 0.00 41.38 3.43
2987 3682 1.135972 GCGTCTACGGTGACTTCGTAA 60.136 52.381 4.49 0.00 41.62 3.18
2988 3683 2.665519 GCGTCTACGGTGACTTCGTAAA 60.666 50.000 4.49 0.00 41.62 2.01
2989 3684 3.751621 CGTCTACGGTGACTTCGTAAAT 58.248 45.455 8.11 0.00 41.62 1.40
2990 3685 3.782893 CGTCTACGGTGACTTCGTAAATC 59.217 47.826 8.11 0.00 41.62 2.17
2991 3686 4.436584 CGTCTACGGTGACTTCGTAAATCT 60.437 45.833 8.11 0.00 41.62 2.40
2992 3687 5.027099 GTCTACGGTGACTTCGTAAATCTC 58.973 45.833 0.00 0.00 41.62 2.75
2993 3688 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
2994 3689 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
2995 3690 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
2996 3691 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
2997 3692 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
2998 3693 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
2999 3694 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
3000 3695 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
3001 3696 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
3002 3697 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
3003 3698 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
3004 3699 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
3005 3700 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
3006 3701 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
3007 3702 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
3008 3703 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3009 3704 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3010 3705 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3011 3706 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3012 3707 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3013 3708 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3014 3709 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3015 3710 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3016 3711 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3017 3712 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3018 3713 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
3019 3714 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
3020 3715 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
3021 3716 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
3022 3717 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
3023 3718 1.450491 CGGCTCAGTCTCTCGGAGA 60.450 63.158 7.60 7.60 40.01 3.71
3024 3719 0.817634 CGGCTCAGTCTCTCGGAGAT 60.818 60.000 8.39 0.00 40.98 2.75
3025 3720 0.667993 GGCTCAGTCTCTCGGAGATG 59.332 60.000 8.39 4.48 40.98 2.90
3026 3721 0.030638 GCTCAGTCTCTCGGAGATGC 59.969 60.000 8.39 4.64 40.98 3.91
3027 3722 1.679139 CTCAGTCTCTCGGAGATGCT 58.321 55.000 8.39 6.89 40.98 3.79
3028 3723 1.603802 CTCAGTCTCTCGGAGATGCTC 59.396 57.143 8.39 0.17 40.98 4.26
3029 3724 1.065126 TCAGTCTCTCGGAGATGCTCA 60.065 52.381 8.39 0.00 40.98 4.26
3030 3725 1.955778 CAGTCTCTCGGAGATGCTCAT 59.044 52.381 8.39 0.00 40.98 2.90
3031 3726 3.145286 CAGTCTCTCGGAGATGCTCATA 58.855 50.000 8.39 0.00 40.98 2.15
3032 3727 3.189080 CAGTCTCTCGGAGATGCTCATAG 59.811 52.174 8.39 0.00 40.98 2.23
3033 3728 2.487762 GTCTCTCGGAGATGCTCATAGG 59.512 54.545 8.39 0.00 40.98 2.57
3034 3729 1.818060 CTCTCGGAGATGCTCATAGGG 59.182 57.143 8.39 0.00 33.89 3.53
3035 3730 0.894141 CTCGGAGATGCTCATAGGGG 59.106 60.000 0.00 0.00 33.89 4.79
3036 3731 0.188587 TCGGAGATGCTCATAGGGGT 59.811 55.000 0.00 0.00 31.08 4.95
3037 3732 1.427753 TCGGAGATGCTCATAGGGGTA 59.572 52.381 0.00 0.00 31.08 3.69
3038 3733 1.821753 CGGAGATGCTCATAGGGGTAG 59.178 57.143 0.00 0.00 31.08 3.18
3039 3734 2.183679 GGAGATGCTCATAGGGGTAGG 58.816 57.143 0.00 0.00 31.08 3.18
3040 3735 2.183679 GAGATGCTCATAGGGGTAGGG 58.816 57.143 0.00 0.00 0.00 3.53
3041 3736 1.509961 AGATGCTCATAGGGGTAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
3042 3737 1.625818 GATGCTCATAGGGGTAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
3043 3738 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
3044 3739 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
3045 3740 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
3046 3741 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
3047 3742 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
3048 3743 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
3049 3744 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
3050 3745 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
3051 3746 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
3052 3747 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
3053 3748 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
3054 3749 3.095347 TAGGGTGTGCGTGTGTGCA 62.095 57.895 0.00 0.00 43.95 4.57
3062 3757 1.085893 TGCGTGTGTGCATTCATAGG 58.914 50.000 0.00 0.00 40.62 2.57
3063 3758 0.378257 GCGTGTGTGCATTCATAGGG 59.622 55.000 0.00 0.00 34.15 3.53
3064 3759 1.016627 CGTGTGTGCATTCATAGGGG 58.983 55.000 0.00 0.00 0.00 4.79
3065 3760 1.678728 CGTGTGTGCATTCATAGGGGT 60.679 52.381 0.00 0.00 0.00 4.95
3066 3761 1.745087 GTGTGTGCATTCATAGGGGTG 59.255 52.381 0.00 0.00 0.00 4.61
3067 3762 1.632920 TGTGTGCATTCATAGGGGTGA 59.367 47.619 0.00 0.00 0.00 4.02
3068 3763 2.292267 GTGTGCATTCATAGGGGTGAG 58.708 52.381 0.00 0.00 0.00 3.51
3069 3764 1.915489 TGTGCATTCATAGGGGTGAGT 59.085 47.619 0.00 0.00 0.00 3.41
3070 3765 2.292267 GTGCATTCATAGGGGTGAGTG 58.708 52.381 0.00 0.00 38.45 3.51
3071 3766 1.915489 TGCATTCATAGGGGTGAGTGT 59.085 47.619 0.00 0.00 37.92 3.55
3072 3767 3.111484 TGCATTCATAGGGGTGAGTGTA 58.889 45.455 0.00 0.00 37.92 2.90
3073 3768 3.716353 TGCATTCATAGGGGTGAGTGTAT 59.284 43.478 0.00 0.00 37.92 2.29
3074 3769 4.067896 GCATTCATAGGGGTGAGTGTATG 58.932 47.826 0.00 0.00 37.92 2.39
3075 3770 3.838244 TTCATAGGGGTGAGTGTATGC 57.162 47.619 0.00 0.00 0.00 3.14
3076 3771 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
3077 3772 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
3078 3773 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
3079 3774 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3080 3775 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3081 3776 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3082 3777 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3083 3778 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3084 3779 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3085 3780 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
3086 3781 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
3087 3782 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
3088 3783 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
3089 3784 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
3092 3787 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
3093 3788 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
3094 3789 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
3095 3790 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
3096 3791 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
3097 3792 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
3098 3793 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
3099 3794 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
3100 3795 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
3101 3796 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
3102 3797 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
3103 3798 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
3104 3799 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3105 3800 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3106 3801 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
3107 3802 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
3108 3803 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3109 3804 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
3110 3805 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
3111 3806 3.070018 GCTTGTGTCTGTACTGATGCTT 58.930 45.455 5.69 0.00 0.00 3.91
3112 3807 4.245660 GCTTGTGTCTGTACTGATGCTTA 58.754 43.478 5.69 0.00 0.00 3.09
3113 3808 4.690748 GCTTGTGTCTGTACTGATGCTTAA 59.309 41.667 5.69 0.00 0.00 1.85
3114 3809 5.179368 GCTTGTGTCTGTACTGATGCTTAAA 59.821 40.000 5.69 0.00 0.00 1.52
3115 3810 6.293407 GCTTGTGTCTGTACTGATGCTTAAAA 60.293 38.462 5.69 0.00 0.00 1.52
3116 3811 7.561021 TTGTGTCTGTACTGATGCTTAAAAA 57.439 32.000 5.69 0.00 0.00 1.94
3170 3870 7.824779 GCAAGGAAGAGAGAGAATAGGTAAAAA 59.175 37.037 0.00 0.00 0.00 1.94
3215 3937 4.806330 CTGTGGTAAGAGACGTGTATGTT 58.194 43.478 0.00 0.00 0.00 2.71
3228 3950 8.776680 AGACGTGTATGTTTGTAATTTTGTTC 57.223 30.769 0.00 0.00 0.00 3.18
3229 3951 7.858879 AGACGTGTATGTTTGTAATTTTGTTCC 59.141 33.333 0.00 0.00 0.00 3.62
3299 4021 0.665369 ACCGATGGTCGTTCGTGAAC 60.665 55.000 2.63 2.63 38.40 3.18
3301 4023 1.670971 CGATGGTCGTTCGTGAACCG 61.671 60.000 7.13 3.32 38.03 4.44
3322 4044 0.108567 GACTTCGCTCACTTCCTCCC 60.109 60.000 0.00 0.00 0.00 4.30
3325 4047 2.035632 CTTCGCTCACTTCCTCCCTAT 58.964 52.381 0.00 0.00 0.00 2.57
3326 4048 1.693627 TCGCTCACTTCCTCCCTATC 58.306 55.000 0.00 0.00 0.00 2.08
3337 4059 5.429109 ACTTCCTCCCTATCTTTTCTAACCC 59.571 44.000 0.00 0.00 0.00 4.11
3342 4064 5.213519 TCCCTATCTTTTCTAACCCGATCA 58.786 41.667 0.00 0.00 0.00 2.92
3345 4067 6.346096 CCTATCTTTTCTAACCCGATCACAA 58.654 40.000 0.00 0.00 0.00 3.33
3403 4126 6.092807 GTCATTATCTGGACACTGGACTTTTC 59.907 42.308 0.00 0.00 34.22 2.29
3434 4160 1.482182 TGGCAAGCATAGAGACGTCAT 59.518 47.619 19.50 8.48 0.00 3.06
3483 4209 0.874390 TTGAAGACAGGCATGCGTTC 59.126 50.000 10.81 11.53 0.00 3.95
3519 4245 6.099341 CCAAACAAAATTATAGTCCTGGCAC 58.901 40.000 0.00 0.00 0.00 5.01
3542 4268 2.894765 TGTGATGTACTCCTTCCGTGAA 59.105 45.455 0.00 0.00 0.00 3.18
3580 4306 6.442513 TTTTTATGCCCCAAACAAAACAAG 57.557 33.333 0.00 0.00 0.00 3.16
3597 4323 6.530019 AAACAAGAAAACATCAGAGGTTGT 57.470 33.333 0.15 0.00 0.00 3.32
3598 4324 7.639113 AAACAAGAAAACATCAGAGGTTGTA 57.361 32.000 0.15 0.00 0.00 2.41
3599 4325 6.867662 ACAAGAAAACATCAGAGGTTGTAG 57.132 37.500 0.15 0.00 0.00 2.74
3600 4326 6.357367 ACAAGAAAACATCAGAGGTTGTAGT 58.643 36.000 0.15 0.00 0.00 2.73
3616 4342 8.179509 AGGTTGTAGTATACTCCATCACATAC 57.820 38.462 9.12 8.50 43.54 2.39
3636 4362 2.725641 GGCGCGGACTTTTGGTTT 59.274 55.556 8.83 0.00 0.00 3.27
3640 4366 0.040425 CGCGGACTTTTGGTTTCTGG 60.040 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.660111 GGCGCTGGAGCAAACGTT 61.660 61.111 7.64 0.00 42.21 3.99
25 26 4.470602 CTTTTGGACTACCTCCCAAGTTT 58.529 43.478 0.00 0.00 42.67 2.66
27 30 2.224793 GCTTTTGGACTACCTCCCAAGT 60.225 50.000 0.00 0.00 42.67 3.16
44 47 2.430465 ACGACAATCTGCATCTGCTTT 58.570 42.857 3.53 0.00 42.66 3.51
45 48 2.105006 ACGACAATCTGCATCTGCTT 57.895 45.000 3.53 0.00 42.66 3.91
80 83 3.623703 CACATGATCCACCATCTTCCAA 58.376 45.455 0.00 0.00 31.92 3.53
110 113 0.546122 ACATGGCATCCACGTACCAT 59.454 50.000 0.00 0.00 43.70 3.55
169 172 3.057526 CACGCCATCGAACTCCAGATATA 60.058 47.826 0.00 0.00 39.41 0.86
171 174 1.067060 CACGCCATCGAACTCCAGATA 59.933 52.381 0.00 0.00 39.41 1.98
209 212 5.710099 ACCATTACCGTTGAACAAATCAGAT 59.290 36.000 0.00 0.00 39.77 2.90
217 220 2.031857 GCGAAACCATTACCGTTGAACA 60.032 45.455 0.00 0.00 0.00 3.18
257 266 0.539518 TATGCAGCTTTGCGGACCTA 59.460 50.000 0.00 0.00 37.69 3.08
299 308 3.605726 TGGATCACCTCTATACCCGAA 57.394 47.619 0.00 0.00 37.04 4.30
386 398 5.496556 TGAACAAGACTGAAGAAAACCTCA 58.503 37.500 0.00 0.00 0.00 3.86
409 421 9.373603 GAAACACCAACCAAAAAGTAAAACTAT 57.626 29.630 0.00 0.00 0.00 2.12
448 461 9.545105 AAAATTGAACAAATTGCAGAATGTAGA 57.455 25.926 0.00 0.00 38.52 2.59
460 473 7.666623 ACCGACCTGATAAAATTGAACAAATT 58.333 30.769 0.00 0.00 40.32 1.82
572 588 6.238103 CCACATCATAGTTTCGATGGTTGTAC 60.238 42.308 0.00 0.00 42.72 2.90
573 589 5.815222 CCACATCATAGTTTCGATGGTTGTA 59.185 40.000 0.00 0.00 42.72 2.41
676 694 3.253188 TGGTTGTTGCTCTTTGTATCTGC 59.747 43.478 0.00 0.00 0.00 4.26
680 698 4.074970 CTCCTGGTTGTTGCTCTTTGTAT 58.925 43.478 0.00 0.00 0.00 2.29
705 739 6.519679 TCATATATCATGCAGAATTTGGCC 57.480 37.500 0.00 0.00 0.00 5.36
714 748 7.062722 CACCTTCTACGTTCATATATCATGCAG 59.937 40.741 0.00 0.00 0.00 4.41
734 772 1.226603 CCCGACGATCGTCACCTTC 60.227 63.158 38.62 18.53 44.77 3.46
860 899 0.531532 GTGATCTGACCGGATGCTGG 60.532 60.000 9.46 0.00 35.68 4.85
883 925 2.823154 TGGTGCTTTTTATAGTGCCACC 59.177 45.455 0.00 0.00 0.00 4.61
884 926 3.254657 TGTGGTGCTTTTTATAGTGCCAC 59.745 43.478 0.00 0.00 39.85 5.01
904 948 7.094549 GGTTTATGGTTATGTGTGTGTGTATGT 60.095 37.037 0.00 0.00 0.00 2.29
905 949 7.094592 TGGTTTATGGTTATGTGTGTGTGTATG 60.095 37.037 0.00 0.00 0.00 2.39
906 950 6.943146 TGGTTTATGGTTATGTGTGTGTGTAT 59.057 34.615 0.00 0.00 0.00 2.29
907 951 6.296803 TGGTTTATGGTTATGTGTGTGTGTA 58.703 36.000 0.00 0.00 0.00 2.90
947 997 3.140325 CCTCTCTCTGCTAGGTAGAGG 57.860 57.143 11.49 14.23 45.37 3.69
951 1001 2.291605 TGTTGCCTCTCTCTGCTAGGTA 60.292 50.000 0.00 0.00 32.67 3.08
961 1011 4.968080 AGATTATCTCCTTGTTGCCTCTCT 59.032 41.667 0.00 0.00 0.00 3.10
962 1012 5.289083 AGATTATCTCCTTGTTGCCTCTC 57.711 43.478 0.00 0.00 0.00 3.20
963 1013 6.814954 TTAGATTATCTCCTTGTTGCCTCT 57.185 37.500 0.00 0.00 0.00 3.69
964 1014 6.367422 CGATTAGATTATCTCCTTGTTGCCTC 59.633 42.308 0.00 0.00 0.00 4.70
965 1015 6.226787 CGATTAGATTATCTCCTTGTTGCCT 58.773 40.000 0.00 0.00 0.00 4.75
967 1017 5.466728 TGCGATTAGATTATCTCCTTGTTGC 59.533 40.000 0.00 0.00 0.00 4.17
968 1018 7.386025 TGATGCGATTAGATTATCTCCTTGTTG 59.614 37.037 0.00 0.00 0.00 3.33
969 1019 7.445121 TGATGCGATTAGATTATCTCCTTGTT 58.555 34.615 0.00 0.00 0.00 2.83
970 1020 6.997655 TGATGCGATTAGATTATCTCCTTGT 58.002 36.000 0.00 0.00 0.00 3.16
975 1025 7.487484 TCTCCATGATGCGATTAGATTATCTC 58.513 38.462 0.00 0.00 0.00 2.75
977 1027 8.074474 CATCTCCATGATGCGATTAGATTATC 57.926 38.462 0.00 0.00 44.96 1.75
1020 1071 1.065928 GAGGGCGATGGACACGTAG 59.934 63.158 0.00 0.00 0.00 3.51
1906 1968 1.902508 TCGAGAAAGAATGAGTGGCCT 59.097 47.619 3.32 0.00 0.00 5.19
1981 2052 6.957631 TGGAGCTACAAAGATGATTCCTTAA 58.042 36.000 0.00 0.00 0.00 1.85
1983 2054 5.441718 TGGAGCTACAAAGATGATTCCTT 57.558 39.130 0.00 0.00 0.00 3.36
1984 2055 5.441718 TTGGAGCTACAAAGATGATTCCT 57.558 39.130 9.54 0.00 0.00 3.36
1985 2056 7.992754 ATATTGGAGCTACAAAGATGATTCC 57.007 36.000 17.06 0.00 33.48 3.01
2000 2071 4.965062 TCGAACACGAAAAATATTGGAGC 58.035 39.130 0.00 0.00 33.03 4.70
2001 2072 6.090898 AGACTCGAACACGAAAAATATTGGAG 59.909 38.462 0.00 0.00 35.63 3.86
2002 2073 5.929992 AGACTCGAACACGAAAAATATTGGA 59.070 36.000 0.00 0.00 35.63 3.53
2003 2074 6.165659 AGACTCGAACACGAAAAATATTGG 57.834 37.500 0.00 0.00 35.63 3.16
2005 2076 7.042321 TGTCAAGACTCGAACACGAAAAATATT 60.042 33.333 1.53 0.00 35.63 1.28
2006 2077 6.422701 TGTCAAGACTCGAACACGAAAAATAT 59.577 34.615 1.53 0.00 35.63 1.28
2007 2078 5.749588 TGTCAAGACTCGAACACGAAAAATA 59.250 36.000 1.53 0.00 35.63 1.40
2010 2226 3.513662 TGTCAAGACTCGAACACGAAAA 58.486 40.909 1.53 0.00 35.63 2.29
2071 2436 1.339631 TGGAAGGAAACCACGCCATAG 60.340 52.381 0.00 0.00 32.03 2.23
2074 2439 1.228124 CTGGAAGGAAACCACGCCA 60.228 57.895 0.00 0.00 33.57 5.69
2075 2440 3.668386 CTGGAAGGAAACCACGCC 58.332 61.111 0.00 0.00 33.57 5.68
2176 2851 2.672996 TCCTCCTGCGCCTTTTGC 60.673 61.111 4.18 0.00 0.00 3.68
2725 3400 1.215647 CTCGTTGAGTTCCTCCCCG 59.784 63.158 0.00 0.00 0.00 5.73
2774 3452 7.322664 TGCATTGTTTGAAGAAGAGACTTTTT 58.677 30.769 0.00 0.00 0.00 1.94
2775 3453 6.866480 TGCATTGTTTGAAGAAGAGACTTTT 58.134 32.000 0.00 0.00 0.00 2.27
2776 3454 6.455360 TGCATTGTTTGAAGAAGAGACTTT 57.545 33.333 0.00 0.00 0.00 2.66
2777 3455 6.455360 TTGCATTGTTTGAAGAAGAGACTT 57.545 33.333 0.00 0.00 0.00 3.01
2779 3457 8.801715 TTATTTGCATTGTTTGAAGAAGAGAC 57.198 30.769 0.00 0.00 0.00 3.36
2815 3510 2.271800 CTCTACCACAGGTTGATTCGC 58.728 52.381 1.02 0.00 36.91 4.70
2816 3511 3.594603 ACTCTACCACAGGTTGATTCG 57.405 47.619 1.02 0.00 36.91 3.34
2817 3512 4.003648 CCAACTCTACCACAGGTTGATTC 58.996 47.826 0.00 0.00 36.91 2.52
2818 3513 3.394606 ACCAACTCTACCACAGGTTGATT 59.605 43.478 0.00 0.00 36.91 2.57
2819 3514 2.979678 ACCAACTCTACCACAGGTTGAT 59.020 45.455 0.00 0.00 36.91 2.57
2820 3515 2.404559 ACCAACTCTACCACAGGTTGA 58.595 47.619 0.00 0.00 37.50 3.18
2821 3516 2.930826 ACCAACTCTACCACAGGTTG 57.069 50.000 0.00 0.00 37.09 3.77
2822 3517 3.326880 CCTAACCAACTCTACCACAGGTT 59.673 47.826 0.00 0.00 41.74 3.50
2823 3518 2.904434 CCTAACCAACTCTACCACAGGT 59.096 50.000 0.00 0.00 40.16 4.00
2824 3519 2.904434 ACCTAACCAACTCTACCACAGG 59.096 50.000 0.00 0.00 0.00 4.00
2825 3520 3.576982 TCACCTAACCAACTCTACCACAG 59.423 47.826 0.00 0.00 0.00 3.66
2826 3521 3.578978 TCACCTAACCAACTCTACCACA 58.421 45.455 0.00 0.00 0.00 4.17
2827 3522 4.202284 TGTTCACCTAACCAACTCTACCAC 60.202 45.833 0.00 0.00 37.27 4.16
2828 3523 3.968649 TGTTCACCTAACCAACTCTACCA 59.031 43.478 0.00 0.00 37.27 3.25
2829 3524 4.040095 ACTGTTCACCTAACCAACTCTACC 59.960 45.833 0.00 0.00 37.27 3.18
2830 3525 4.989168 CACTGTTCACCTAACCAACTCTAC 59.011 45.833 0.00 0.00 37.27 2.59
2831 3526 4.039973 CCACTGTTCACCTAACCAACTCTA 59.960 45.833 0.00 0.00 37.27 2.43
2832 3527 3.181454 CCACTGTTCACCTAACCAACTCT 60.181 47.826 0.00 0.00 37.27 3.24
2833 3528 3.139077 CCACTGTTCACCTAACCAACTC 58.861 50.000 0.00 0.00 37.27 3.01
2834 3529 2.508300 ACCACTGTTCACCTAACCAACT 59.492 45.455 0.00 0.00 37.27 3.16
2835 3530 2.927028 ACCACTGTTCACCTAACCAAC 58.073 47.619 0.00 0.00 37.27 3.77
2836 3531 4.263156 GGATACCACTGTTCACCTAACCAA 60.263 45.833 0.00 0.00 37.27 3.67
2837 3532 3.262405 GGATACCACTGTTCACCTAACCA 59.738 47.826 0.00 0.00 37.27 3.67
2838 3533 3.870274 GGATACCACTGTTCACCTAACC 58.130 50.000 0.00 0.00 37.27 2.85
2853 3548 1.985895 CCCTGATAGGTTGGGGATACC 59.014 57.143 0.00 0.00 46.50 2.73
2854 3549 2.702748 ACCCTGATAGGTTGGGGATAC 58.297 52.381 3.72 0.00 44.97 2.24
2870 3565 2.618045 CGAGCACCAGGATTTAAACCCT 60.618 50.000 0.00 0.00 0.00 4.34
2871 3566 1.743394 CGAGCACCAGGATTTAAACCC 59.257 52.381 0.00 0.00 0.00 4.11
2872 3567 1.132453 GCGAGCACCAGGATTTAAACC 59.868 52.381 0.00 0.00 0.00 3.27
2873 3568 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
2874 3569 2.192664 TGCGAGCACCAGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
2875 3570 2.418368 ATGCGAGCACCAGGATTTAA 57.582 45.000 0.00 0.00 0.00 1.52
2876 3571 2.418368 AATGCGAGCACCAGGATTTA 57.582 45.000 0.00 0.00 0.00 1.40
2877 3572 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2878 3573 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2879 3574 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
2880 3575 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
2881 3576 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
2882 3577 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
2883 3578 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
2884 3579 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
2885 3580 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2886 3581 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
2887 3582 7.059945 CGAAATAAATCCAGAAATAATGCGAGC 59.940 37.037 0.00 0.00 0.00 5.03
2888 3583 7.535258 CCGAAATAAATCCAGAAATAATGCGAG 59.465 37.037 0.00 0.00 0.00 5.03
2889 3584 7.359595 CCGAAATAAATCCAGAAATAATGCGA 58.640 34.615 0.00 0.00 0.00 5.10
2890 3585 6.582295 CCCGAAATAAATCCAGAAATAATGCG 59.418 38.462 0.00 0.00 0.00 4.73
2891 3586 7.657336 TCCCGAAATAAATCCAGAAATAATGC 58.343 34.615 0.00 0.00 0.00 3.56
2895 3590 8.856103 GGAAATCCCGAAATAAATCCAGAAATA 58.144 33.333 0.00 0.00 0.00 1.40
2896 3591 7.726216 GGAAATCCCGAAATAAATCCAGAAAT 58.274 34.615 0.00 0.00 0.00 2.17
2897 3592 7.107639 GGAAATCCCGAAATAAATCCAGAAA 57.892 36.000 0.00 0.00 0.00 2.52
2898 3593 6.709018 GGAAATCCCGAAATAAATCCAGAA 57.291 37.500 0.00 0.00 0.00 3.02
2913 3608 3.946907 CGTATCGCCGGAAATCCC 58.053 61.111 5.05 0.00 0.00 3.85
2924 3619 1.560923 CTCCCACTGAAAGCGTATCG 58.439 55.000 0.00 0.00 37.60 2.92
2925 3620 1.480954 TCCTCCCACTGAAAGCGTATC 59.519 52.381 0.00 0.00 37.60 2.24
2926 3621 1.482593 CTCCTCCCACTGAAAGCGTAT 59.517 52.381 0.00 0.00 37.60 3.06
2927 3622 0.895530 CTCCTCCCACTGAAAGCGTA 59.104 55.000 0.00 0.00 37.60 4.42
2928 3623 0.832135 TCTCCTCCCACTGAAAGCGT 60.832 55.000 0.00 0.00 37.60 5.07
2929 3624 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
2930 3625 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
2931 3626 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2932 3627 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2933 3628 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2934 3629 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2935 3630 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2936 3631 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2962 3657 2.359107 TCACCGTAGACGCCTCGT 60.359 61.111 0.00 0.00 45.10 4.18
2963 3658 1.919956 AAGTCACCGTAGACGCCTCG 61.920 60.000 0.00 0.00 43.24 4.63
2964 3659 0.179169 GAAGTCACCGTAGACGCCTC 60.179 60.000 0.00 0.00 43.24 4.70
2965 3660 1.881602 GAAGTCACCGTAGACGCCT 59.118 57.895 0.00 0.00 43.24 5.52
2966 3661 1.513586 CGAAGTCACCGTAGACGCC 60.514 63.158 0.00 0.00 43.24 5.68
2967 3662 0.443869 TACGAAGTCACCGTAGACGC 59.556 55.000 0.00 0.00 43.93 5.19
2968 3663 2.880822 TTACGAAGTCACCGTAGACG 57.119 50.000 0.00 0.00 43.93 4.18
2969 3664 4.979388 AGATTTACGAAGTCACCGTAGAC 58.021 43.478 0.00 0.00 43.93 2.59
2970 3665 4.696877 TGAGATTTACGAAGTCACCGTAGA 59.303 41.667 0.00 0.00 43.93 2.59
2971 3666 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
2972 3667 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
2973 3668 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
2974 3669 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
2975 3670 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
2976 3671 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
2977 3672 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
2978 3673 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
2979 3674 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
2980 3675 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
2981 3676 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
2982 3677 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
2983 3678 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
2984 3679 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
2985 3680 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
2986 3681 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
2987 3682 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
2988 3683 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
2989 3684 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
2990 3685 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
2991 3686 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2992 3687 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
2993 3688 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
2994 3689 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
2995 3690 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
2996 3691 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
2997 3692 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
2998 3693 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
2999 3694 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
3000 3695 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
3001 3696 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
3002 3697 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
3003 3698 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
3004 3699 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
3005 3700 0.817634 ATCTCCGAGAGACTGAGCCG 60.818 60.000 4.07 0.00 41.76 5.52
3006 3701 0.667993 CATCTCCGAGAGACTGAGCC 59.332 60.000 4.07 0.00 41.76 4.70
3007 3702 0.030638 GCATCTCCGAGAGACTGAGC 59.969 60.000 4.07 5.25 41.76 4.26
3008 3703 1.603802 GAGCATCTCCGAGAGACTGAG 59.396 57.143 4.07 0.00 41.76 3.35
3009 3704 1.065126 TGAGCATCTCCGAGAGACTGA 60.065 52.381 4.07 0.00 41.76 3.41
3010 3705 1.387539 TGAGCATCTCCGAGAGACTG 58.612 55.000 4.07 0.00 41.76 3.51
3011 3706 2.363306 ATGAGCATCTCCGAGAGACT 57.637 50.000 4.07 3.60 41.76 3.24
3012 3707 2.487762 CCTATGAGCATCTCCGAGAGAC 59.512 54.545 4.07 0.00 41.76 3.36
3013 3708 2.554124 CCCTATGAGCATCTCCGAGAGA 60.554 54.545 4.07 6.14 43.20 3.10
3014 3709 1.818060 CCCTATGAGCATCTCCGAGAG 59.182 57.143 4.07 0.00 34.92 3.20
3015 3710 1.548809 CCCCTATGAGCATCTCCGAGA 60.549 57.143 0.00 0.00 34.92 4.04
3016 3711 0.894141 CCCCTATGAGCATCTCCGAG 59.106 60.000 0.00 0.00 34.92 4.63
3017 3712 0.188587 ACCCCTATGAGCATCTCCGA 59.811 55.000 0.00 0.00 34.92 4.55
3018 3713 1.821753 CTACCCCTATGAGCATCTCCG 59.178 57.143 0.00 0.00 34.92 4.63
3019 3714 2.183679 CCTACCCCTATGAGCATCTCC 58.816 57.143 0.00 0.00 34.92 3.71
3020 3715 2.183679 CCCTACCCCTATGAGCATCTC 58.816 57.143 0.00 0.00 34.92 2.75
3021 3716 1.509961 ACCCTACCCCTATGAGCATCT 59.490 52.381 0.00 0.00 34.92 2.90
3022 3717 1.625818 CACCCTACCCCTATGAGCATC 59.374 57.143 0.00 0.00 0.00 3.91
3023 3718 1.061346 ACACCCTACCCCTATGAGCAT 60.061 52.381 0.00 0.00 0.00 3.79
3024 3719 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
3025 3720 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
3026 3721 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3027 3722 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
3028 3723 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
3029 3724 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
3030 3725 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
3031 3726 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
3032 3727 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
3033 3728 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
3034 3729 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
3035 3730 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
3036 3731 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3037 3732 3.772853 ATGCACACACGCACACCCT 62.773 57.895 0.00 0.00 46.56 4.34
3038 3733 2.731587 GAATGCACACACGCACACCC 62.732 60.000 0.00 0.00 46.56 4.61
3039 3734 1.370414 GAATGCACACACGCACACC 60.370 57.895 0.00 0.00 46.56 4.16
3040 3735 0.040157 ATGAATGCACACACGCACAC 60.040 50.000 0.00 0.00 46.56 3.82
3041 3736 1.464219 CTATGAATGCACACACGCACA 59.536 47.619 0.00 0.00 46.56 4.57
3042 3737 1.202065 CCTATGAATGCACACACGCAC 60.202 52.381 0.00 0.00 46.56 5.34
3044 3739 0.378257 CCCTATGAATGCACACACGC 59.622 55.000 0.00 0.00 0.00 5.34
3045 3740 1.016627 CCCCTATGAATGCACACACG 58.983 55.000 0.00 0.00 0.00 4.49
3046 3741 1.745087 CACCCCTATGAATGCACACAC 59.255 52.381 0.00 0.00 0.00 3.82
3047 3742 1.632920 TCACCCCTATGAATGCACACA 59.367 47.619 0.00 0.00 0.00 3.72
3048 3743 2.292267 CTCACCCCTATGAATGCACAC 58.708 52.381 0.00 0.00 0.00 3.82
3049 3744 1.915489 ACTCACCCCTATGAATGCACA 59.085 47.619 0.00 0.00 0.00 4.57
3050 3745 2.292267 CACTCACCCCTATGAATGCAC 58.708 52.381 0.00 0.00 0.00 4.57
3051 3746 1.915489 ACACTCACCCCTATGAATGCA 59.085 47.619 0.00 0.00 28.78 3.96
3052 3747 2.717639 ACACTCACCCCTATGAATGC 57.282 50.000 0.00 0.00 28.78 3.56
3053 3748 4.067896 GCATACACTCACCCCTATGAATG 58.932 47.826 0.00 0.00 32.12 2.67
3054 3749 3.244215 CGCATACACTCACCCCTATGAAT 60.244 47.826 0.00 0.00 0.00 2.57
3055 3750 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
3056 3751 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
3057 3752 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
3058 3753 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
3059 3754 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
3060 3755 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
3061 3756 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
3062 3757 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3063 3758 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3064 3759 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3065 3760 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
3066 3761 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
3067 3762 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
3068 3763 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
3069 3764 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
3070 3765 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
3071 3766 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
3072 3767 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
3073 3768 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
3077 3772 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
3078 3773 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
3079 3774 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
3080 3775 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
3081 3776 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
3082 3777 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
3083 3778 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
3084 3779 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
3085 3780 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
3086 3781 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
3087 3782 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
3088 3783 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
3089 3784 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
3090 3785 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
3091 3786 6.785488 TTTAAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
3092 3787 7.561021 TTTTTAAGCATCAGTACAGACACAA 57.439 32.000 0.00 0.00 0.00 3.33
3170 3870 1.018910 GTTAGGCACCAACACGTGTT 58.981 50.000 27.70 27.70 39.12 3.32
3301 4023 1.670380 GGAGGAAGTGAGCGAAGTCAC 60.670 57.143 5.18 5.18 46.22 3.67
3322 4044 7.710907 TGATTGTGATCGGGTTAGAAAAGATAG 59.289 37.037 0.00 0.00 34.91 2.08
3325 4047 5.800296 TGATTGTGATCGGGTTAGAAAAGA 58.200 37.500 0.00 0.00 34.91 2.52
3326 4048 5.447818 GCTGATTGTGATCGGGTTAGAAAAG 60.448 44.000 0.00 0.00 38.79 2.27
3337 4059 8.607459 AGTTATTTTCTTAGCTGATTGTGATCG 58.393 33.333 0.00 0.00 34.91 3.69
3342 4064 9.066892 TGTCAAGTTATTTTCTTAGCTGATTGT 57.933 29.630 0.00 0.00 0.00 2.71
3345 4067 7.602644 TCGTGTCAAGTTATTTTCTTAGCTGAT 59.397 33.333 0.00 0.00 0.00 2.90
3403 4126 2.028733 GCTTGCCAAATTGCACGGG 61.029 57.895 0.00 0.00 41.88 5.28
3434 4160 7.952368 TGATAGATCATCATAGGAGAACCAAGA 59.048 37.037 0.00 0.00 38.79 3.02
3510 4236 2.009774 GTACATCACATGTGCCAGGAC 58.990 52.381 21.38 14.93 44.60 3.85
3519 4245 3.119137 TCACGGAAGGAGTACATCACATG 60.119 47.826 0.00 0.00 0.00 3.21
3568 4294 7.331687 ACCTCTGATGTTTTCTTGTTTTGTTTG 59.668 33.333 0.00 0.00 0.00 2.93
3570 4296 6.935167 ACCTCTGATGTTTTCTTGTTTTGTT 58.065 32.000 0.00 0.00 0.00 2.83
3578 4304 9.654663 GTATACTACAACCTCTGATGTTTTCTT 57.345 33.333 0.00 0.00 0.00 2.52
3580 4306 9.303537 GAGTATACTACAACCTCTGATGTTTTC 57.696 37.037 5.09 0.00 0.00 2.29
3597 4323 5.258841 CCCGGTATGTGATGGAGTATACTA 58.741 45.833 5.09 0.00 0.00 1.82
3598 4324 4.087182 CCCGGTATGTGATGGAGTATACT 58.913 47.826 4.68 4.68 0.00 2.12
3599 4325 3.368116 GCCCGGTATGTGATGGAGTATAC 60.368 52.174 0.00 0.00 0.00 1.47
3600 4326 2.829720 GCCCGGTATGTGATGGAGTATA 59.170 50.000 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.