Multiple sequence alignment - TraesCS6A01G097200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G097200 chr6A 100.000 5511 0 0 1 5511 64321738 64316228 0.000000e+00 10178.0
1 TraesCS6A01G097200 chr6A 92.353 170 10 2 56 225 101317231 101317397 7.130000e-59 239.0
2 TraesCS6A01G097200 chr6D 89.176 5414 278 138 268 5511 50740404 50745679 0.000000e+00 6468.0
3 TraesCS6A01G097200 chr6D 91.379 174 12 2 54 227 141974324 141974494 9.230000e-58 235.0
4 TraesCS6A01G097200 chr6D 95.506 89 4 0 2119 2207 385916941 385917029 5.750000e-30 143.0
5 TraesCS6A01G097200 chr6D 93.684 95 4 2 2111 2204 199210320 199210413 2.070000e-29 141.0
6 TraesCS6A01G097200 chr6D 92.784 97 7 0 2118 2214 441898381 441898285 2.070000e-29 141.0
7 TraesCS6A01G097200 chr6B 91.267 1878 77 32 342 2159 120673812 120671962 0.000000e+00 2479.0
8 TraesCS6A01G097200 chr6B 87.524 1587 96 38 2194 3742 120671960 120670438 0.000000e+00 1740.0
9 TraesCS6A01G097200 chr6B 92.504 707 34 13 3735 4430 120670415 120669717 0.000000e+00 994.0
10 TraesCS6A01G097200 chr6B 82.411 1120 100 46 4434 5511 120668228 120667164 0.000000e+00 887.0
11 TraesCS6A01G097200 chr1B 84.984 313 27 15 4291 4585 217554840 217555150 3.230000e-77 300.0
12 TraesCS6A01G097200 chr1B 83.529 340 26 11 5004 5321 217555530 217555861 1.940000e-74 291.0
13 TraesCS6A01G097200 chr2B 84.026 313 28 13 4291 4585 181699758 181700066 1.170000e-71 281.0
14 TraesCS6A01G097200 chr2B 81.462 383 35 16 5004 5362 181700447 181700817 1.170000e-71 281.0
15 TraesCS6A01G097200 chr2B 92.857 168 9 2 62 229 206593719 206593555 1.980000e-59 241.0
16 TraesCS6A01G097200 chr3D 93.491 169 9 1 60 228 187836471 187836305 3.300000e-62 250.0
17 TraesCS6A01G097200 chr3D 95.745 94 4 0 2117 2210 302930385 302930478 9.560000e-33 152.0
18 TraesCS6A01G097200 chr3D 83.158 95 14 2 428 521 157343588 157343681 9.840000e-13 86.1
19 TraesCS6A01G097200 chr3A 93.491 169 9 1 60 228 238686208 238686374 3.300000e-62 250.0
20 TraesCS6A01G097200 chr4A 92.398 171 10 2 58 227 37307032 37306864 1.980000e-59 241.0
21 TraesCS6A01G097200 chr4A 96.552 87 3 0 2118 2204 603447672 603447586 1.600000e-30 145.0
22 TraesCS6A01G097200 chr4A 85.859 99 14 0 426 524 598724553 598724455 7.550000e-19 106.0
23 TraesCS6A01G097200 chr3B 91.111 180 13 2 50 229 183594440 183594264 1.980000e-59 241.0
24 TraesCS6A01G097200 chr2D 92.814 167 10 1 59 225 413879771 413879607 1.980000e-59 241.0
25 TraesCS6A01G097200 chr2D 90.960 177 13 2 55 231 299891547 299891720 9.230000e-58 235.0
26 TraesCS6A01G097200 chr2D 90.476 84 7 1 2392 2475 465200775 465200693 5.840000e-20 110.0
27 TraesCS6A01G097200 chr7B 94.681 94 5 0 2118 2211 701408266 701408173 4.450000e-31 147.0
28 TraesCS6A01G097200 chr7B 89.583 48 5 0 227 274 371038250 371038203 1.660000e-05 62.1
29 TraesCS6A01G097200 chr4B 93.617 94 6 0 2119 2212 192792831 192792738 2.070000e-29 141.0
30 TraesCS6A01G097200 chr7A 81.818 99 18 0 426 524 186540672 186540770 3.540000e-12 84.2
31 TraesCS6A01G097200 chr7A 89.583 48 5 0 227 274 422830946 422830899 1.660000e-05 62.1
32 TraesCS6A01G097200 chr2A 81.818 99 15 1 426 524 57720529 57720434 4.580000e-11 80.5
33 TraesCS6A01G097200 chr1D 84.615 65 9 1 426 489 300058804 300058868 4.610000e-06 63.9
34 TraesCS6A01G097200 chr1D 84.615 65 9 1 426 489 300059254 300059318 4.610000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G097200 chr6A 64316228 64321738 5510 True 10178.0 10178 100.0000 1 5511 1 chr6A.!!$R1 5510
1 TraesCS6A01G097200 chr6D 50740404 50745679 5275 False 6468.0 6468 89.1760 268 5511 1 chr6D.!!$F1 5243
2 TraesCS6A01G097200 chr6B 120667164 120673812 6648 True 1525.0 2479 88.4265 342 5511 4 chr6B.!!$R1 5169
3 TraesCS6A01G097200 chr1B 217554840 217555861 1021 False 295.5 300 84.2565 4291 5321 2 chr1B.!!$F1 1030
4 TraesCS6A01G097200 chr2B 181699758 181700817 1059 False 281.0 281 82.7440 4291 5362 2 chr2B.!!$F1 1071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 361 0.107606 AAAGGTACGCACACACACCA 60.108 50.0 0.00 0.0 33.27 4.17 F
424 442 0.299003 GAGTTATGCTCAGTTCGCGC 59.701 55.0 0.00 0.0 43.58 6.86 F
429 447 0.863799 ATGCTCAGTTCGCGCATATG 59.136 50.0 8.75 0.0 42.12 1.78 F
1877 1941 0.884259 TGACACTGTTGGGCATGTCG 60.884 55.0 0.00 0.0 43.58 4.35 F
3216 3326 0.517316 CTGTAAAGGTTGCCACGAGC 59.483 55.0 0.00 0.0 44.14 5.03 F
4426 4638 0.247894 CTCGCTCACTCGCTACTGTC 60.248 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1533 0.171007 AATTGGAAATCCTGCGTGCG 59.829 50.000 0.44 0.0 36.82 5.34 R
2377 2479 0.543277 TCAGCCGAGCATCATTTCCT 59.457 50.000 0.00 0.0 33.17 3.36 R
2538 2640 8.939201 ATGACTGACTGATAAAGTACATGAAG 57.061 34.615 0.00 0.0 40.07 3.02 R
3263 3378 1.135831 CGTCAGAGATGCGAGCGATAT 60.136 52.381 0.00 0.0 0.00 1.63 R
4434 4646 0.035056 AGATGGGTGCTACCACAAGC 60.035 55.000 1.97 0.0 44.72 4.01 R
5347 7142 0.627469 AGAGAGAGAGAGAGCCCCCT 60.627 60.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.740123 TTTTGAATTGGTTGTACTTAGACAGA 57.260 30.769 0.00 0.00 0.00 3.41
36 37 8.918202 TTTGAATTGGTTGTACTTAGACAGAT 57.082 30.769 0.00 0.00 0.00 2.90
37 38 7.905604 TGAATTGGTTGTACTTAGACAGATG 57.094 36.000 0.00 0.00 0.00 2.90
38 39 6.371548 TGAATTGGTTGTACTTAGACAGATGC 59.628 38.462 0.00 0.00 0.00 3.91
39 40 4.202245 TGGTTGTACTTAGACAGATGCC 57.798 45.455 0.00 0.00 0.00 4.40
40 41 3.055385 TGGTTGTACTTAGACAGATGCCC 60.055 47.826 0.00 0.00 0.00 5.36
41 42 3.055385 GGTTGTACTTAGACAGATGCCCA 60.055 47.826 0.00 0.00 0.00 5.36
42 43 3.887621 TGTACTTAGACAGATGCCCAC 57.112 47.619 0.00 0.00 0.00 4.61
43 44 3.169908 TGTACTTAGACAGATGCCCACA 58.830 45.455 0.00 0.00 0.00 4.17
44 45 3.774766 TGTACTTAGACAGATGCCCACAT 59.225 43.478 0.00 0.00 39.98 3.21
45 46 4.959839 TGTACTTAGACAGATGCCCACATA 59.040 41.667 0.00 0.00 36.35 2.29
46 47 4.408182 ACTTAGACAGATGCCCACATAC 57.592 45.455 0.00 0.00 36.35 2.39
47 48 3.774766 ACTTAGACAGATGCCCACATACA 59.225 43.478 0.00 0.00 36.35 2.29
48 49 2.698855 AGACAGATGCCCACATACAC 57.301 50.000 0.00 0.00 36.35 2.90
49 50 1.908619 AGACAGATGCCCACATACACA 59.091 47.619 0.00 0.00 36.35 3.72
50 51 2.009774 GACAGATGCCCACATACACAC 58.990 52.381 0.00 0.00 36.35 3.82
51 52 1.350684 ACAGATGCCCACATACACACA 59.649 47.619 0.00 0.00 36.35 3.72
52 53 1.739466 CAGATGCCCACATACACACAC 59.261 52.381 0.00 0.00 36.35 3.82
53 54 1.350684 AGATGCCCACATACACACACA 59.649 47.619 0.00 0.00 36.35 3.72
54 55 2.025981 AGATGCCCACATACACACACAT 60.026 45.455 0.00 0.00 36.35 3.21
55 56 3.199727 AGATGCCCACATACACACACATA 59.800 43.478 0.00 0.00 36.35 2.29
56 57 2.705730 TGCCCACATACACACACATAC 58.294 47.619 0.00 0.00 0.00 2.39
57 58 2.039084 TGCCCACATACACACACATACA 59.961 45.455 0.00 0.00 0.00 2.29
58 59 3.078097 GCCCACATACACACACATACAA 58.922 45.455 0.00 0.00 0.00 2.41
59 60 3.694072 GCCCACATACACACACATACAAT 59.306 43.478 0.00 0.00 0.00 2.71
60 61 4.878971 GCCCACATACACACACATACAATA 59.121 41.667 0.00 0.00 0.00 1.90
61 62 5.530915 GCCCACATACACACACATACAATAT 59.469 40.000 0.00 0.00 0.00 1.28
62 63 6.708502 GCCCACATACACACACATACAATATA 59.291 38.462 0.00 0.00 0.00 0.86
63 64 7.307751 GCCCACATACACACACATACAATATAC 60.308 40.741 0.00 0.00 0.00 1.47
64 65 7.931407 CCCACATACACACACATACAATATACT 59.069 37.037 0.00 0.00 0.00 2.12
65 66 8.978539 CCACATACACACACATACAATATACTC 58.021 37.037 0.00 0.00 0.00 2.59
66 67 8.978539 CACATACACACACATACAATATACTCC 58.021 37.037 0.00 0.00 0.00 3.85
67 68 8.148351 ACATACACACACATACAATATACTCCC 58.852 37.037 0.00 0.00 0.00 4.30
68 69 6.808321 ACACACACATACAATATACTCCCT 57.192 37.500 0.00 0.00 0.00 4.20
69 70 6.817184 ACACACACATACAATATACTCCCTC 58.183 40.000 0.00 0.00 0.00 4.30
70 71 6.183360 ACACACACATACAATATACTCCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
71 72 6.042093 CACACACATACAATATACTCCCTCCT 59.958 42.308 0.00 0.00 0.00 3.69
72 73 6.615726 ACACACATACAATATACTCCCTCCTT 59.384 38.462 0.00 0.00 0.00 3.36
73 74 7.127339 ACACACATACAATATACTCCCTCCTTT 59.873 37.037 0.00 0.00 0.00 3.11
74 75 7.993183 CACACATACAATATACTCCCTCCTTTT 59.007 37.037 0.00 0.00 0.00 2.27
75 76 8.211629 ACACATACAATATACTCCCTCCTTTTC 58.788 37.037 0.00 0.00 0.00 2.29
76 77 8.432805 CACATACAATATACTCCCTCCTTTTCT 58.567 37.037 0.00 0.00 0.00 2.52
77 78 9.670442 ACATACAATATACTCCCTCCTTTTCTA 57.330 33.333 0.00 0.00 0.00 2.10
88 89 9.508721 ACTCCCTCCTTTTCTAAATATAAGTCT 57.491 33.333 0.00 0.00 0.00 3.24
136 137 9.875691 TTACATACGGATGTATATAGACGTAGT 57.124 33.333 20.99 11.55 46.04 2.73
137 138 8.783833 ACATACGGATGTATATAGACGTAGTT 57.216 34.615 12.79 0.00 43.41 2.24
138 139 9.224267 ACATACGGATGTATATAGACGTAGTTT 57.776 33.333 12.79 0.00 43.41 2.66
154 155 7.684937 ACGTAGTTTAGAGTGTAGATTCACT 57.315 36.000 0.00 0.00 45.46 3.41
155 156 8.783833 ACGTAGTTTAGAGTGTAGATTCACTA 57.216 34.615 0.00 0.00 43.61 2.74
156 157 9.224267 ACGTAGTTTAGAGTGTAGATTCACTAA 57.776 33.333 0.00 0.00 43.61 2.24
163 164 9.944376 TTAGAGTGTAGATTCACTAATTTTGCT 57.056 29.630 0.00 0.00 46.81 3.91
164 165 8.485976 AGAGTGTAGATTCACTAATTTTGCTC 57.514 34.615 0.00 0.00 46.81 4.26
165 166 7.550906 AGAGTGTAGATTCACTAATTTTGCTCC 59.449 37.037 0.00 0.00 46.81 4.70
166 167 6.313905 AGTGTAGATTCACTAATTTTGCTCCG 59.686 38.462 0.00 0.00 45.31 4.63
167 168 6.092259 GTGTAGATTCACTAATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
168 169 7.277098 GTGTAGATTCACTAATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
169 170 7.985184 TGTAGATTCACTAATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 32.49 3.06
170 171 7.251704 AGATTCACTAATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
171 172 6.823689 AGATTCACTAATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
172 173 7.985184 AGATTCACTAATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
173 174 7.534085 TTCACTAATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
174 175 6.636705 TCACTAATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
175 176 6.755141 TCACTAATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
176 177 6.018994 CACTAATTTTGCTCCGTATGTAGTCC 60.019 42.308 0.00 0.00 0.00 3.85
177 178 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
178 179 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
179 180 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
180 181 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
181 182 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
182 183 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
183 184 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
184 185 4.021368 GCTCCGTATGTAGTCCATATTGGT 60.021 45.833 0.00 0.00 38.29 3.67
185 186 5.710984 CTCCGTATGTAGTCCATATTGGTC 58.289 45.833 0.00 0.00 38.29 4.02
186 187 5.141910 TCCGTATGTAGTCCATATTGGTCA 58.858 41.667 0.00 0.00 38.29 4.02
187 188 5.599242 TCCGTATGTAGTCCATATTGGTCAA 59.401 40.000 0.00 0.00 38.29 3.18
188 189 6.269077 TCCGTATGTAGTCCATATTGGTCAAT 59.731 38.462 1.65 1.65 38.29 2.57
189 190 6.590292 CCGTATGTAGTCCATATTGGTCAATC 59.410 42.308 0.00 0.00 38.29 2.67
190 191 7.378966 CGTATGTAGTCCATATTGGTCAATCT 58.621 38.462 0.00 0.00 38.29 2.40
191 192 7.542477 CGTATGTAGTCCATATTGGTCAATCTC 59.458 40.741 0.00 0.00 38.29 2.75
192 193 7.623999 ATGTAGTCCATATTGGTCAATCTCT 57.376 36.000 0.00 0.00 39.03 3.10
193 194 8.727100 ATGTAGTCCATATTGGTCAATCTCTA 57.273 34.615 0.00 0.00 39.03 2.43
194 195 8.547481 TGTAGTCCATATTGGTCAATCTCTAA 57.453 34.615 0.00 0.00 39.03 2.10
195 196 8.988060 TGTAGTCCATATTGGTCAATCTCTAAA 58.012 33.333 0.00 0.00 39.03 1.85
196 197 9.832445 GTAGTCCATATTGGTCAATCTCTAAAA 57.168 33.333 0.00 0.00 39.03 1.52
198 199 9.401058 AGTCCATATTGGTCAATCTCTAAAAAG 57.599 33.333 0.00 0.00 39.03 2.27
199 200 9.396022 GTCCATATTGGTCAATCTCTAAAAAGA 57.604 33.333 0.00 0.00 39.03 2.52
200 201 9.396022 TCCATATTGGTCAATCTCTAAAAAGAC 57.604 33.333 0.00 0.00 39.03 3.01
201 202 9.401058 CCATATTGGTCAATCTCTAAAAAGACT 57.599 33.333 0.00 0.00 31.35 3.24
220 221 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
221 222 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
222 223 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
223 224 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
224 225 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
225 226 9.102453 ACTTATATTTAGGAATGGAGGGAGTAC 57.898 37.037 0.00 0.00 0.00 2.73
226 227 9.101325 CTTATATTTAGGAATGGAGGGAGTACA 57.899 37.037 0.00 0.00 0.00 2.90
227 228 9.629649 TTATATTTAGGAATGGAGGGAGTACAT 57.370 33.333 0.00 0.00 0.00 2.29
229 230 6.996180 TTTAGGAATGGAGGGAGTACATAG 57.004 41.667 0.00 0.00 0.00 2.23
230 231 3.863086 AGGAATGGAGGGAGTACATAGG 58.137 50.000 0.00 0.00 0.00 2.57
231 232 3.471306 AGGAATGGAGGGAGTACATAGGA 59.529 47.826 0.00 0.00 0.00 2.94
232 233 4.110426 AGGAATGGAGGGAGTACATAGGAT 59.890 45.833 0.00 0.00 0.00 3.24
233 234 4.223923 GGAATGGAGGGAGTACATAGGATG 59.776 50.000 0.00 0.00 0.00 3.51
234 235 3.993658 TGGAGGGAGTACATAGGATGT 57.006 47.619 0.00 0.00 46.92 3.06
235 236 4.280789 TGGAGGGAGTACATAGGATGTT 57.719 45.455 0.00 0.00 41.63 2.71
236 237 4.223953 TGGAGGGAGTACATAGGATGTTC 58.776 47.826 0.00 0.00 41.63 3.18
237 238 4.078571 TGGAGGGAGTACATAGGATGTTCT 60.079 45.833 0.00 0.00 41.63 3.01
238 239 5.135533 TGGAGGGAGTACATAGGATGTTCTA 59.864 44.000 0.00 0.00 41.63 2.10
239 240 6.075984 GGAGGGAGTACATAGGATGTTCTAA 58.924 44.000 0.00 0.00 41.63 2.10
240 241 6.015265 GGAGGGAGTACATAGGATGTTCTAAC 60.015 46.154 0.00 0.00 41.63 2.34
241 242 6.684538 AGGGAGTACATAGGATGTTCTAACT 58.315 40.000 0.00 0.00 41.63 2.24
242 243 7.133483 AGGGAGTACATAGGATGTTCTAACTT 58.867 38.462 0.00 0.00 41.63 2.66
243 244 7.624077 AGGGAGTACATAGGATGTTCTAACTTT 59.376 37.037 0.00 0.00 41.63 2.66
244 245 8.265764 GGGAGTACATAGGATGTTCTAACTTTT 58.734 37.037 0.00 0.00 41.63 2.27
245 246 9.668497 GGAGTACATAGGATGTTCTAACTTTTT 57.332 33.333 0.00 0.00 41.63 1.94
266 267 6.801539 TTTTCTGAATGGATGTACACAGAC 57.198 37.500 10.24 0.00 34.79 3.51
267 268 5.482163 TTCTGAATGGATGTACACAGACA 57.518 39.130 10.24 2.81 34.79 3.41
268 269 5.682234 TCTGAATGGATGTACACAGACAT 57.318 39.130 0.00 0.00 42.82 3.06
269 270 6.790232 TCTGAATGGATGTACACAGACATA 57.210 37.500 0.00 0.00 40.18 2.29
270 271 7.365497 TCTGAATGGATGTACACAGACATAT 57.635 36.000 0.00 0.00 40.18 1.78
271 272 7.795047 TCTGAATGGATGTACACAGACATATT 58.205 34.615 0.00 0.00 40.18 1.28
305 306 7.555965 AGTACAATTACAGATGCTCATACACA 58.444 34.615 0.00 0.00 0.00 3.72
306 307 8.206867 AGTACAATTACAGATGCTCATACACAT 58.793 33.333 0.00 0.00 0.00 3.21
322 323 6.598850 TCATACACATGCACATACACTCATTT 59.401 34.615 0.00 0.00 31.73 2.32
323 324 5.710513 ACACATGCACATACACTCATTTT 57.289 34.783 0.00 0.00 0.00 1.82
339 340 7.173562 ACACTCATTTTTATAAAGGTACGCACA 59.826 33.333 0.00 0.00 0.00 4.57
346 361 0.107606 AAAGGTACGCACACACACCA 60.108 50.000 0.00 0.00 33.27 4.17
374 392 2.840651 AGTCTAGGACAACCTTGATGGG 59.159 50.000 0.00 0.00 46.10 4.00
387 405 1.595311 TGATGGGCTAGTTCCACCAT 58.405 50.000 8.74 6.86 45.87 3.55
424 442 0.299003 GAGTTATGCTCAGTTCGCGC 59.701 55.000 0.00 0.00 43.58 6.86
429 447 0.863799 ATGCTCAGTTCGCGCATATG 59.136 50.000 8.75 0.00 42.12 1.78
465 483 4.704540 TGTGTTTGTTCAGTCCATTCAGTT 59.295 37.500 0.00 0.00 0.00 3.16
471 489 4.929211 TGTTCAGTCCATTCAGTTCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
573 594 3.511146 ACCAACTATGAAAACAGCCATGG 59.489 43.478 7.63 7.63 0.00 3.66
751 781 1.224592 CTCCATTTCACCCTCCCCG 59.775 63.158 0.00 0.00 0.00 5.73
803 836 1.536940 TTCACCTGTCGATCCGTGTA 58.463 50.000 8.11 0.00 0.00 2.90
806 839 2.494471 TCACCTGTCGATCCGTGTAAAT 59.506 45.455 8.11 0.00 0.00 1.40
830 863 4.106197 CGGTTCTTGTTATCTCTTCTCCG 58.894 47.826 0.00 0.00 0.00 4.63
848 881 3.028850 TCCGTCGATCCAGGAAACTAAT 58.971 45.455 0.00 0.00 40.21 1.73
851 884 3.001330 CGTCGATCCAGGAAACTAATTGC 59.999 47.826 0.00 0.00 40.21 3.56
1424 1464 3.554259 CGTAGCGTGCTCCATTAGATA 57.446 47.619 0.00 0.00 0.00 1.98
1425 1465 3.235195 CGTAGCGTGCTCCATTAGATAC 58.765 50.000 0.00 0.00 0.00 2.24
1428 1468 1.070134 GCGTGCTCCATTAGATACCCA 59.930 52.381 0.00 0.00 0.00 4.51
1446 1486 1.202580 CCATCCATCACCGTCTTCTCC 60.203 57.143 0.00 0.00 0.00 3.71
1460 1500 4.035208 CGTCTTCTCCGGAAAATTAATGGG 59.965 45.833 5.23 0.00 0.00 4.00
1478 1518 9.812347 ATTAATGGGAGATGAATGCAACTATTA 57.188 29.630 0.00 0.00 0.00 0.98
1479 1519 9.639563 TTAATGGGAGATGAATGCAACTATTAA 57.360 29.630 0.00 0.00 0.00 1.40
1480 1520 8.716674 AATGGGAGATGAATGCAACTATTAAT 57.283 30.769 0.00 0.00 0.00 1.40
1481 1521 8.716674 ATGGGAGATGAATGCAACTATTAATT 57.283 30.769 0.00 0.00 0.00 1.40
1482 1522 8.169977 TGGGAGATGAATGCAACTATTAATTC 57.830 34.615 0.00 0.00 0.00 2.17
1483 1523 7.041167 TGGGAGATGAATGCAACTATTAATTCG 60.041 37.037 0.00 0.00 0.00 3.34
1485 1525 8.226448 GGAGATGAATGCAACTATTAATTCGAG 58.774 37.037 0.00 0.00 0.00 4.04
1488 1528 8.902540 ATGAATGCAACTATTAATTCGAGGTA 57.097 30.769 0.00 0.00 0.00 3.08
1489 1529 8.138365 TGAATGCAACTATTAATTCGAGGTAC 57.862 34.615 0.00 0.00 0.00 3.34
1490 1530 6.764877 ATGCAACTATTAATTCGAGGTACG 57.235 37.500 0.00 0.00 44.09 3.67
1491 1531 4.505191 TGCAACTATTAATTCGAGGTACGC 59.495 41.667 0.00 0.00 42.26 4.42
1492 1532 4.505191 GCAACTATTAATTCGAGGTACGCA 59.495 41.667 0.00 0.00 42.26 5.24
1493 1533 5.555818 GCAACTATTAATTCGAGGTACGCAC 60.556 44.000 0.00 0.00 42.26 5.34
1494 1534 4.285292 ACTATTAATTCGAGGTACGCACG 58.715 43.478 0.00 0.00 42.26 5.34
1495 1535 1.270971 TTAATTCGAGGTACGCACGC 58.729 50.000 0.00 0.00 42.26 5.34
1609 1649 2.439156 GAGAAGCTGGGCGCCATT 60.439 61.111 30.85 16.87 40.39 3.16
1699 1739 4.081050 GCCTTCGCCCTCAAGTTT 57.919 55.556 0.00 0.00 0.00 2.66
1719 1759 4.925861 GGCCTGCTCCATCTCCGC 62.926 72.222 0.00 0.00 0.00 5.54
1773 1813 2.505557 CGTCTCCGGCGTGGTAAC 60.506 66.667 6.01 0.00 39.52 2.50
1868 1932 6.324819 AGAAAAAGTTGATGTGACACTGTTG 58.675 36.000 7.20 0.00 0.00 3.33
1877 1941 0.884259 TGACACTGTTGGGCATGTCG 60.884 55.000 0.00 0.00 43.58 4.35
2048 2112 6.425504 CATGCTTCGGTATTGATTCTCTTTC 58.574 40.000 0.00 0.00 0.00 2.62
2074 2155 2.627945 TCTTAATGCTAACCGGCACAG 58.372 47.619 0.00 0.00 45.36 3.66
2075 2156 2.235155 TCTTAATGCTAACCGGCACAGA 59.765 45.455 0.00 0.00 45.36 3.41
2145 2226 9.047947 ACTCCCTCTGTAAACAAATATAAGAGT 57.952 33.333 0.00 0.00 0.00 3.24
2259 2359 2.486966 GCAGATTTGTGCGCTCCC 59.513 61.111 9.73 0.00 32.74 4.30
2260 2360 2.787249 CAGATTTGTGCGCTCCCG 59.213 61.111 9.73 0.00 37.57 5.14
2301 2403 5.975344 TGTTGTCAACTAGAAGTACTTGACG 59.025 40.000 14.14 3.06 40.98 4.35
2333 2435 1.708551 AGACAAGGGAATTCCGGGAAA 59.291 47.619 18.30 0.00 41.52 3.13
2374 2476 7.318141 ACATGTTTGCCAAATATCTCTTCTTG 58.682 34.615 0.00 0.00 0.00 3.02
2375 2477 6.271488 TGTTTGCCAAATATCTCTTCTTGG 57.729 37.500 0.00 0.00 41.11 3.61
2376 2478 6.009589 TGTTTGCCAAATATCTCTTCTTGGA 58.990 36.000 5.89 0.00 40.72 3.53
2377 2479 6.493115 TGTTTGCCAAATATCTCTTCTTGGAA 59.507 34.615 5.89 0.00 40.72 3.53
2538 2640 5.253330 TCCATGTAACCCATCTCTTTTCAC 58.747 41.667 0.00 0.00 0.00 3.18
2546 2648 6.126863 ACCCATCTCTTTTCACTTCATGTA 57.873 37.500 0.00 0.00 0.00 2.29
2565 2667 8.066612 TCATGTACTTTATCAGTCAGTCATCA 57.933 34.615 0.00 0.00 36.88 3.07
2679 2782 3.084039 GTTGCTGGAAGTCATTGATCCA 58.916 45.455 8.38 8.38 40.84 3.41
2710 2813 7.627311 TGTCCTAGAAGTTCCCCTTTTTATAC 58.373 38.462 0.00 0.00 32.03 1.47
2840 2947 3.876589 TTCTGCGGGGTTCGACAGC 62.877 63.158 0.00 0.00 42.43 4.40
2939 3046 5.536497 AGGACCCTGAAATCATAAAGGTT 57.464 39.130 0.00 0.00 0.00 3.50
2940 3047 6.652205 AGGACCCTGAAATCATAAAGGTTA 57.348 37.500 0.00 0.00 0.00 2.85
2941 3048 7.039722 AGGACCCTGAAATCATAAAGGTTAA 57.960 36.000 0.00 0.00 0.00 2.01
2976 3083 4.250464 TCCAACAATCGGAGTTCATACAC 58.750 43.478 0.00 0.00 0.00 2.90
2982 3089 0.846401 CGGAGTTCATACACGATGCG 59.154 55.000 0.00 0.00 35.29 4.73
2983 3090 1.797713 CGGAGTTCATACACGATGCGT 60.798 52.381 0.00 0.00 42.36 5.24
3126 3236 2.353610 GCAATGTGGCTTGGGGAGG 61.354 63.158 0.00 0.00 0.00 4.30
3171 3281 3.816524 AGCGCCGAGGAGAAGACG 61.817 66.667 2.29 0.00 0.00 4.18
3216 3326 0.517316 CTGTAAAGGTTGCCACGAGC 59.483 55.000 0.00 0.00 44.14 5.03
3244 3359 7.676947 TCCTACTCATATATGCAGGTTTTACC 58.323 38.462 19.22 0.00 38.99 2.85
3338 3455 3.126225 GACGGCGTCGACTCTCCT 61.126 66.667 25.42 0.00 40.11 3.69
3357 3474 4.988598 AGGTGGCGCACGACAAGG 62.989 66.667 10.83 0.00 33.39 3.61
3424 3541 1.005215 AGAGGCCAAGGTGAAGGAATG 59.995 52.381 5.01 0.00 0.00 2.67
3433 3550 4.974645 AGGTGAAGGAATGTGTCTAACA 57.025 40.909 0.00 0.00 44.79 2.41
3503 3634 2.434702 GGTCCCTTCCATGGTAGTAGTG 59.565 54.545 16.36 2.06 0.00 2.74
3513 3653 5.482526 TCCATGGTAGTAGTGCTAACTTGAA 59.517 40.000 17.31 0.00 42.09 2.69
3515 3655 6.258727 CCATGGTAGTAGTGCTAACTTGAATG 59.741 42.308 17.31 7.34 42.09 2.67
3517 3657 7.470935 TGGTAGTAGTGCTAACTTGAATGTA 57.529 36.000 4.85 0.00 38.21 2.29
3547 3688 2.479566 TTCTGTTGCATCTCTGACCC 57.520 50.000 0.00 0.00 0.00 4.46
3576 3717 1.449778 GGCTGCTCCTTCCGGTAAC 60.450 63.158 0.00 0.00 0.00 2.50
3714 3858 2.549926 CTTTGCACCCTTCAACCAAAC 58.450 47.619 0.00 0.00 0.00 2.93
3737 3911 5.069516 ACAAACACTCCATGAAAAAGCAGAT 59.930 36.000 0.00 0.00 0.00 2.90
3766 3940 0.388520 GGAATGAGGCGTTGGTTTGC 60.389 55.000 0.00 0.00 0.00 3.68
4074 4257 4.409218 GGTGTCGACGGCGCAGTA 62.409 66.667 14.59 0.00 37.46 2.74
4253 4443 3.216800 AGCTGACACAACACATGACATT 58.783 40.909 0.00 0.00 0.00 2.71
4254 4444 3.004002 AGCTGACACAACACATGACATTG 59.996 43.478 0.00 3.24 0.00 2.82
4255 4445 3.003585 GCTGACACAACACATGACATTGA 59.996 43.478 0.00 0.00 0.00 2.57
4257 4447 5.765176 CTGACACAACACATGACATTGATT 58.235 37.500 0.00 0.00 0.00 2.57
4258 4448 5.761003 TGACACAACACATGACATTGATTC 58.239 37.500 0.00 3.97 0.00 2.52
4259 4449 5.298777 TGACACAACACATGACATTGATTCA 59.701 36.000 0.00 6.23 0.00 2.57
4260 4450 5.765176 ACACAACACATGACATTGATTCAG 58.235 37.500 0.00 0.00 0.00 3.02
4261 4451 5.158494 CACAACACATGACATTGATTCAGG 58.842 41.667 0.00 0.00 0.00 3.86
4262 4452 4.171005 CAACACATGACATTGATTCAGGC 58.829 43.478 0.00 0.00 0.00 4.85
4264 4454 3.827876 ACACATGACATTGATTCAGGCAA 59.172 39.130 0.00 0.00 0.00 4.52
4265 4455 4.082408 ACACATGACATTGATTCAGGCAAG 60.082 41.667 0.00 0.00 0.00 4.01
4267 4457 2.516906 TGACATTGATTCAGGCAAGCA 58.483 42.857 0.00 0.00 0.00 3.91
4269 4459 2.490903 GACATTGATTCAGGCAAGCACT 59.509 45.455 0.00 0.00 27.18 4.40
4287 4477 2.165437 CACTCCTGTCTAGCCTTGTCTC 59.835 54.545 0.00 0.00 0.00 3.36
4289 4479 0.457851 CCTGTCTAGCCTTGTCTCCG 59.542 60.000 0.00 0.00 0.00 4.63
4397 4587 6.805150 AGAAGAAAAAGAAGGGGATGGTAAT 58.195 36.000 0.00 0.00 0.00 1.89
4426 4638 0.247894 CTCGCTCACTCGCTACTGTC 60.248 60.000 0.00 0.00 0.00 3.51
4434 4646 1.201181 ACTCGCTACTGTCAGCTTGAG 59.799 52.381 0.00 5.24 39.51 3.02
4448 6125 1.160137 CTTGAGCTTGTGGTAGCACC 58.840 55.000 21.65 7.11 43.68 5.01
4519 6196 3.303132 CGTTCCGTTGGTGAAGAAAAGAG 60.303 47.826 0.00 0.00 0.00 2.85
4525 6202 0.519077 GGTGAAGAAAAGAGCGCTGG 59.481 55.000 18.48 0.00 0.00 4.85
4580 6267 0.605083 GGGGAGCAAAGCAAGAAAGG 59.395 55.000 0.00 0.00 0.00 3.11
4585 6272 2.887152 GAGCAAAGCAAGAAAGGGAGAA 59.113 45.455 0.00 0.00 0.00 2.87
4586 6273 2.889678 AGCAAAGCAAGAAAGGGAGAAG 59.110 45.455 0.00 0.00 0.00 2.85
4604 6322 3.194968 AGAAGGATGCAGCAAAAAGGATG 59.805 43.478 3.51 0.00 0.00 3.51
4615 6333 6.509656 CAGCAAAAAGGATGCATACATACAT 58.490 36.000 12.53 0.00 46.22 2.29
4616 6334 7.650890 CAGCAAAAAGGATGCATACATACATA 58.349 34.615 12.53 0.00 46.22 2.29
4617 6335 7.592533 CAGCAAAAAGGATGCATACATACATAC 59.407 37.037 12.53 0.00 46.22 2.39
4618 6336 7.285172 AGCAAAAAGGATGCATACATACATACA 59.715 33.333 12.53 0.00 46.22 2.29
4619 6337 8.084073 GCAAAAAGGATGCATACATACATACAT 58.916 33.333 12.53 0.00 39.90 2.29
4622 6340 9.791801 AAAAGGATGCATACATACATACATACA 57.208 29.630 12.53 0.00 39.90 2.29
4623 6341 9.964354 AAAGGATGCATACATACATACATACAT 57.036 29.630 12.53 0.00 39.90 2.29
4626 6344 9.816354 GGATGCATACATACATACATACATACA 57.184 33.333 3.28 0.00 37.06 2.29
4664 6382 0.813184 AATGCCGAGGCTGAATTGTG 59.187 50.000 15.75 0.00 42.51 3.33
4665 6383 0.322816 ATGCCGAGGCTGAATTGTGT 60.323 50.000 15.75 0.00 42.51 3.72
4666 6384 1.236616 TGCCGAGGCTGAATTGTGTG 61.237 55.000 15.75 0.00 42.51 3.82
4667 6385 1.237285 GCCGAGGCTGAATTGTGTGT 61.237 55.000 6.90 0.00 38.26 3.72
4668 6386 0.518636 CCGAGGCTGAATTGTGTGTG 59.481 55.000 0.00 0.00 0.00 3.82
4674 6395 2.226437 GGCTGAATTGTGTGTGGTACTG 59.774 50.000 0.00 0.00 0.00 2.74
4700 6421 5.184864 CACATTAGGCCACAGGATTTTGTAA 59.815 40.000 5.01 0.00 0.00 2.41
4709 6430 7.201776 GGCCACAGGATTTTGTAATTTTGTTTT 60.202 33.333 0.00 0.00 0.00 2.43
4728 6449 6.475504 TGTTTTATCTTGGAAGCAGAGATCA 58.524 36.000 0.00 0.00 32.68 2.92
4750 6471 7.928908 TCAAACTGTTTCATGTGAAATTAGC 57.071 32.000 10.98 0.27 44.69 3.09
4751 6472 7.487484 TCAAACTGTTTCATGTGAAATTAGCA 58.513 30.769 10.98 4.42 44.69 3.49
4757 6478 3.083293 TCATGTGAAATTAGCAGCAGCA 58.917 40.909 3.17 0.00 45.49 4.41
4762 6483 2.086869 GAAATTAGCAGCAGCACTCCA 58.913 47.619 3.17 0.00 45.49 3.86
4767 6488 2.558286 GCAGCAGCACTCCAAGCAA 61.558 57.895 0.00 0.00 41.58 3.91
4812 6533 4.257447 CGCGTCTTGTCGAAACATATTTTG 59.743 41.667 0.00 0.00 34.73 2.44
4829 6550 9.897744 ACATATTTTGTGTGTGTAGAAGAATTG 57.102 29.630 0.00 0.00 37.11 2.32
4841 6562 8.364894 TGTGTAGAAGAATTGTACTGTATGTGT 58.635 33.333 0.00 0.00 44.37 3.72
4888 6612 3.565482 AGTTTTGCGCTTCTGAAGAATGA 59.435 39.130 21.06 1.21 33.01 2.57
4901 6625 8.675705 TTCTGAAGAATGATGTGTAACTGAAA 57.324 30.769 0.00 0.00 38.04 2.69
4941 6667 1.067425 TGATGCCTTGCAACAATCTGC 60.067 47.619 0.00 0.00 43.62 4.26
4950 6676 0.109272 CAACAATCTGCCTGCAGCTG 60.109 55.000 10.11 10.11 43.31 4.24
4951 6677 1.248785 AACAATCTGCCTGCAGCTGG 61.249 55.000 17.12 14.00 43.31 4.85
4952 6678 1.378119 CAATCTGCCTGCAGCTGGA 60.378 57.895 22.08 12.70 43.31 3.86
4953 6679 1.378250 AATCTGCCTGCAGCTGGAC 60.378 57.895 22.08 13.05 43.31 4.02
4954 6680 2.133359 AATCTGCCTGCAGCTGGACA 62.133 55.000 22.08 16.53 43.31 4.02
4955 6681 2.133359 ATCTGCCTGCAGCTGGACAA 62.133 55.000 22.08 6.02 43.31 3.18
4956 6682 2.281970 TGCCTGCAGCTGGACAAG 60.282 61.111 22.08 3.23 44.23 3.16
4957 6683 3.060615 GCCTGCAGCTGGACAAGG 61.061 66.667 22.08 11.80 38.99 3.61
4958 6684 2.360852 CCTGCAGCTGGACAAGGG 60.361 66.667 17.12 6.33 0.00 3.95
4959 6685 2.433446 CTGCAGCTGGACAAGGGT 59.567 61.111 17.12 0.00 0.00 4.34
4960 6686 1.679311 CTGCAGCTGGACAAGGGTA 59.321 57.895 17.12 0.00 0.00 3.69
4977 6712 1.004277 GGTAGGAGGATTGTGGCACAA 59.996 52.381 32.77 32.77 44.16 3.33
4991 6726 2.486951 GCACAATCTGCCAATAGCTG 57.513 50.000 0.00 0.00 44.23 4.24
5015 6786 5.048083 GGACAATATGCTTGGTCTTGTTTCA 60.048 40.000 0.00 0.00 30.63 2.69
5024 6795 4.237976 TGGTCTTGTTTCACCTGGTTAA 57.762 40.909 0.00 0.00 33.36 2.01
5033 6804 2.733956 TCACCTGGTTAATTGCATCCC 58.266 47.619 0.00 0.00 0.00 3.85
5037 6808 3.298619 CCTGGTTAATTGCATCCCATGA 58.701 45.455 0.00 0.00 0.00 3.07
5094 6865 1.352017 TGTCAGGCTTGTGATGGTGAT 59.648 47.619 0.00 0.00 0.00 3.06
5095 6866 1.741706 GTCAGGCTTGTGATGGTGATG 59.258 52.381 0.00 0.00 0.00 3.07
5101 6872 0.959867 TTGTGATGGTGATGGCACGG 60.960 55.000 0.00 0.00 46.09 4.94
5107 6884 1.745232 TGGTGATGGCACGGATAAAC 58.255 50.000 0.00 0.00 46.09 2.01
5129 6906 6.463995 ACTGGAGTAAACAAATTGCAGAAA 57.536 33.333 0.00 0.00 33.80 2.52
5132 6909 6.272318 TGGAGTAAACAAATTGCAGAAACAG 58.728 36.000 0.00 0.00 0.00 3.16
5154 6947 2.113860 TTCTGCCTGCAATCCTGTAC 57.886 50.000 0.00 0.00 0.00 2.90
5177 6970 3.659183 ATAAGACAGGCAGGCTGAAAT 57.341 42.857 29.85 16.21 34.00 2.17
5184 6977 2.718073 GCAGGCTGAAATGGGCAGG 61.718 63.158 20.86 0.00 34.00 4.85
5253 7046 6.183360 CCATTTACAAACCCATATGTCTGTCC 60.183 42.308 1.24 0.00 0.00 4.02
5339 7134 5.616424 CGGCATCTCAGAGAAAAGAAAACTG 60.616 44.000 3.63 0.00 0.00 3.16
5347 7142 6.435904 TCAGAGAAAAGAAAACTGGAACCAAA 59.564 34.615 0.00 0.00 0.00 3.28
5370 7165 1.215423 GGGCTCTCTCTCTCTCTCCTT 59.785 57.143 0.00 0.00 0.00 3.36
5371 7166 2.301346 GGCTCTCTCTCTCTCTCCTTG 58.699 57.143 0.00 0.00 0.00 3.61
5372 7167 2.357154 GGCTCTCTCTCTCTCTCCTTGT 60.357 54.545 0.00 0.00 0.00 3.16
5450 7245 5.410746 ACATGACACATGAGAAACAGATCAC 59.589 40.000 16.86 0.00 0.00 3.06
5461 7258 6.705825 TGAGAAACAGATCACGAGATGAAAAA 59.294 34.615 0.00 0.00 41.93 1.94
5466 7263 5.178252 ACAGATCACGAGATGAAAAACAGTG 59.822 40.000 0.00 0.00 41.93 3.66
5472 7276 6.315144 TCACGAGATGAAAAACAGTGAAAAGA 59.685 34.615 0.00 0.00 34.71 2.52
5473 7277 6.412072 CACGAGATGAAAAACAGTGAAAAGAC 59.588 38.462 0.00 0.00 0.00 3.01
5474 7278 6.316390 ACGAGATGAAAAACAGTGAAAAGACT 59.684 34.615 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.179909 TCTGTCTAAGTACAACCAATTCAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
10 11 8.740123 TCTGTCTAAGTACAACCAATTCAAAA 57.260 30.769 0.00 0.00 0.00 2.44
11 12 8.783093 CATCTGTCTAAGTACAACCAATTCAAA 58.217 33.333 0.00 0.00 0.00 2.69
12 13 7.094805 GCATCTGTCTAAGTACAACCAATTCAA 60.095 37.037 0.00 0.00 0.00 2.69
13 14 6.371548 GCATCTGTCTAAGTACAACCAATTCA 59.628 38.462 0.00 0.00 0.00 2.57
14 15 6.183360 GGCATCTGTCTAAGTACAACCAATTC 60.183 42.308 0.00 0.00 0.00 2.17
15 16 5.648092 GGCATCTGTCTAAGTACAACCAATT 59.352 40.000 0.00 0.00 0.00 2.32
16 17 5.186198 GGCATCTGTCTAAGTACAACCAAT 58.814 41.667 0.00 0.00 0.00 3.16
17 18 4.564821 GGGCATCTGTCTAAGTACAACCAA 60.565 45.833 0.00 0.00 0.00 3.67
18 19 3.055385 GGGCATCTGTCTAAGTACAACCA 60.055 47.826 0.00 0.00 0.00 3.67
19 20 3.055385 TGGGCATCTGTCTAAGTACAACC 60.055 47.826 0.00 0.00 0.00 3.77
20 21 3.933332 GTGGGCATCTGTCTAAGTACAAC 59.067 47.826 0.00 0.00 0.00 3.32
21 22 3.580895 TGTGGGCATCTGTCTAAGTACAA 59.419 43.478 0.00 0.00 0.00 2.41
22 23 3.169908 TGTGGGCATCTGTCTAAGTACA 58.830 45.455 0.00 0.00 0.00 2.90
23 24 3.887621 TGTGGGCATCTGTCTAAGTAC 57.112 47.619 0.00 0.00 0.00 2.73
24 25 4.959839 TGTATGTGGGCATCTGTCTAAGTA 59.040 41.667 0.00 0.00 36.58 2.24
25 26 3.774766 TGTATGTGGGCATCTGTCTAAGT 59.225 43.478 0.00 0.00 36.58 2.24
26 27 4.122776 GTGTATGTGGGCATCTGTCTAAG 58.877 47.826 0.00 0.00 36.58 2.18
27 28 3.517500 TGTGTATGTGGGCATCTGTCTAA 59.482 43.478 0.00 0.00 36.58 2.10
28 29 3.103742 TGTGTATGTGGGCATCTGTCTA 58.896 45.455 0.00 0.00 36.58 2.59
29 30 1.908619 TGTGTATGTGGGCATCTGTCT 59.091 47.619 0.00 0.00 36.58 3.41
30 31 2.009774 GTGTGTATGTGGGCATCTGTC 58.990 52.381 0.00 0.00 36.58 3.51
31 32 1.350684 TGTGTGTATGTGGGCATCTGT 59.649 47.619 0.00 0.00 36.58 3.41
32 33 1.739466 GTGTGTGTATGTGGGCATCTG 59.261 52.381 0.00 0.00 36.58 2.90
33 34 1.350684 TGTGTGTGTATGTGGGCATCT 59.649 47.619 0.00 0.00 36.58 2.90
34 35 1.819928 TGTGTGTGTATGTGGGCATC 58.180 50.000 0.00 0.00 36.58 3.91
35 36 2.512692 ATGTGTGTGTATGTGGGCAT 57.487 45.000 0.00 0.00 39.03 4.40
36 37 2.039084 TGTATGTGTGTGTATGTGGGCA 59.961 45.455 0.00 0.00 0.00 5.36
37 38 2.705730 TGTATGTGTGTGTATGTGGGC 58.294 47.619 0.00 0.00 0.00 5.36
38 39 7.931407 AGTATATTGTATGTGTGTGTATGTGGG 59.069 37.037 0.00 0.00 0.00 4.61
39 40 8.887036 AGTATATTGTATGTGTGTGTATGTGG 57.113 34.615 0.00 0.00 0.00 4.17
40 41 8.978539 GGAGTATATTGTATGTGTGTGTATGTG 58.021 37.037 0.00 0.00 0.00 3.21
41 42 8.148351 GGGAGTATATTGTATGTGTGTGTATGT 58.852 37.037 0.00 0.00 0.00 2.29
42 43 8.367911 AGGGAGTATATTGTATGTGTGTGTATG 58.632 37.037 0.00 0.00 0.00 2.39
43 44 8.492415 AGGGAGTATATTGTATGTGTGTGTAT 57.508 34.615 0.00 0.00 0.00 2.29
44 45 7.014905 GGAGGGAGTATATTGTATGTGTGTGTA 59.985 40.741 0.00 0.00 0.00 2.90
45 46 6.183360 GGAGGGAGTATATTGTATGTGTGTGT 60.183 42.308 0.00 0.00 0.00 3.72
46 47 6.042093 AGGAGGGAGTATATTGTATGTGTGTG 59.958 42.308 0.00 0.00 0.00 3.82
47 48 6.143915 AGGAGGGAGTATATTGTATGTGTGT 58.856 40.000 0.00 0.00 0.00 3.72
48 49 6.672266 AGGAGGGAGTATATTGTATGTGTG 57.328 41.667 0.00 0.00 0.00 3.82
49 50 7.691993 AAAGGAGGGAGTATATTGTATGTGT 57.308 36.000 0.00 0.00 0.00 3.72
50 51 8.432805 AGAAAAGGAGGGAGTATATTGTATGTG 58.567 37.037 0.00 0.00 0.00 3.21
51 52 8.568617 AGAAAAGGAGGGAGTATATTGTATGT 57.431 34.615 0.00 0.00 0.00 2.29
62 63 9.508721 AGACTTATATTTAGAAAAGGAGGGAGT 57.491 33.333 0.00 0.00 0.00 3.85
116 117 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
117 118 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
126 127 9.610705 TGAATCTACACTCTAAACTACGTCTAT 57.389 33.333 0.00 0.00 0.00 1.98
127 128 8.877779 GTGAATCTACACTCTAAACTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
128 129 7.607223 AGTGAATCTACACTCTAAACTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
129 130 7.750769 AGTGAATCTACACTCTAAACTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
130 131 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
137 138 9.944376 AGCAAAATTAGTGAATCTACACTCTAA 57.056 29.630 4.63 0.00 46.36 2.10
138 139 9.587772 GAGCAAAATTAGTGAATCTACACTCTA 57.412 33.333 4.63 0.00 46.36 2.43
139 140 7.550906 GGAGCAAAATTAGTGAATCTACACTCT 59.449 37.037 4.63 0.00 46.36 3.24
140 141 7.464710 CGGAGCAAAATTAGTGAATCTACACTC 60.465 40.741 4.63 0.00 46.36 3.51
142 143 6.092259 ACGGAGCAAAATTAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
143 144 6.170506 ACGGAGCAAAATTAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
144 145 6.663944 ACGGAGCAAAATTAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
145 146 7.985184 ACATACGGAGCAAAATTAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
146 147 6.823689 ACATACGGAGCAAAATTAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
147 148 7.016361 ACATACGGAGCAAAATTAGTGAATC 57.984 36.000 0.00 0.00 0.00 2.52
148 149 7.769044 ACTACATACGGAGCAAAATTAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
149 150 7.101054 ACTACATACGGAGCAAAATTAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
150 151 6.636705 ACTACATACGGAGCAAAATTAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
151 152 6.018994 GGACTACATACGGAGCAAAATTAGTG 60.019 42.308 0.00 0.00 0.00 2.74
152 153 6.047231 GGACTACATACGGAGCAAAATTAGT 58.953 40.000 0.00 0.00 0.00 2.24
153 154 6.046593 TGGACTACATACGGAGCAAAATTAG 58.953 40.000 0.00 0.00 0.00 1.73
154 155 5.979993 TGGACTACATACGGAGCAAAATTA 58.020 37.500 0.00 0.00 0.00 1.40
155 156 4.839121 TGGACTACATACGGAGCAAAATT 58.161 39.130 0.00 0.00 0.00 1.82
156 157 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
157 158 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
158 159 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
159 160 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
160 161 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
161 162 4.021368 ACCAATATGGACTACATACGGAGC 60.021 45.833 2.85 0.00 44.41 4.70
162 163 5.243060 TGACCAATATGGACTACATACGGAG 59.757 44.000 2.85 0.00 44.41 4.63
163 164 5.141910 TGACCAATATGGACTACATACGGA 58.858 41.667 2.85 0.00 44.41 4.69
164 165 5.462530 TGACCAATATGGACTACATACGG 57.537 43.478 2.85 0.00 44.41 4.02
165 166 7.378966 AGATTGACCAATATGGACTACATACG 58.621 38.462 2.85 0.00 44.41 3.06
166 167 8.589338 AGAGATTGACCAATATGGACTACATAC 58.411 37.037 2.85 0.00 44.41 2.39
167 168 8.727100 AGAGATTGACCAATATGGACTACATA 57.273 34.615 2.85 0.00 45.60 2.29
168 169 7.623999 AGAGATTGACCAATATGGACTACAT 57.376 36.000 2.85 0.00 40.96 2.29
169 170 8.547481 TTAGAGATTGACCAATATGGACTACA 57.453 34.615 2.85 0.00 40.96 2.74
170 171 9.832445 TTTTAGAGATTGACCAATATGGACTAC 57.168 33.333 2.85 0.00 40.96 2.73
172 173 9.401058 CTTTTTAGAGATTGACCAATATGGACT 57.599 33.333 2.85 0.00 40.96 3.85
173 174 9.396022 TCTTTTTAGAGATTGACCAATATGGAC 57.604 33.333 2.85 0.00 40.96 4.02
174 175 9.396022 GTCTTTTTAGAGATTGACCAATATGGA 57.604 33.333 2.85 0.00 40.96 3.41
175 176 9.401058 AGTCTTTTTAGAGATTGACCAATATGG 57.599 33.333 0.00 0.00 45.02 2.74
194 195 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
195 196 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
196 197 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
197 198 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
198 199 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
199 200 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
200 201 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
201 202 9.629649 ATGTACTCCCTCCATTCCTAAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
203 204 9.273137 CTATGTACTCCCTCCATTCCTAAATAT 57.727 37.037 0.00 0.00 0.00 1.28
204 205 7.678598 CCTATGTACTCCCTCCATTCCTAAATA 59.321 40.741 0.00 0.00 0.00 1.40
205 206 6.502158 CCTATGTACTCCCTCCATTCCTAAAT 59.498 42.308 0.00 0.00 0.00 1.40
206 207 5.844516 CCTATGTACTCCCTCCATTCCTAAA 59.155 44.000 0.00 0.00 0.00 1.85
207 208 5.137255 TCCTATGTACTCCCTCCATTCCTAA 59.863 44.000 0.00 0.00 0.00 2.69
208 209 4.673132 TCCTATGTACTCCCTCCATTCCTA 59.327 45.833 0.00 0.00 0.00 2.94
209 210 3.471306 TCCTATGTACTCCCTCCATTCCT 59.529 47.826 0.00 0.00 0.00 3.36
210 211 3.858135 TCCTATGTACTCCCTCCATTCC 58.142 50.000 0.00 0.00 0.00 3.01
211 212 4.841246 ACATCCTATGTACTCCCTCCATTC 59.159 45.833 0.00 0.00 42.78 2.67
212 213 4.832492 ACATCCTATGTACTCCCTCCATT 58.168 43.478 0.00 0.00 42.78 3.16
213 214 4.493819 ACATCCTATGTACTCCCTCCAT 57.506 45.455 0.00 0.00 42.78 3.41
214 215 3.993658 ACATCCTATGTACTCCCTCCA 57.006 47.619 0.00 0.00 42.78 3.86
215 216 4.484912 AGAACATCCTATGTACTCCCTCC 58.515 47.826 0.00 0.00 44.07 4.30
216 217 6.778559 AGTTAGAACATCCTATGTACTCCCTC 59.221 42.308 0.00 0.00 44.07 4.30
217 218 6.684538 AGTTAGAACATCCTATGTACTCCCT 58.315 40.000 0.00 0.00 44.07 4.20
218 219 6.980416 AGTTAGAACATCCTATGTACTCCC 57.020 41.667 0.00 0.00 44.07 4.30
219 220 9.668497 AAAAAGTTAGAACATCCTATGTACTCC 57.332 33.333 0.00 0.00 44.07 3.85
242 243 6.770303 TGTCTGTGTACATCCATTCAGAAAAA 59.230 34.615 11.82 1.43 34.49 1.94
243 244 6.295249 TGTCTGTGTACATCCATTCAGAAAA 58.705 36.000 11.82 3.40 34.49 2.29
244 245 5.863965 TGTCTGTGTACATCCATTCAGAAA 58.136 37.500 11.82 5.65 34.49 2.52
245 246 5.482163 TGTCTGTGTACATCCATTCAGAA 57.518 39.130 11.82 2.90 34.49 3.02
246 247 5.682234 ATGTCTGTGTACATCCATTCAGA 57.318 39.130 0.00 3.01 35.08 3.27
247 248 8.442632 AAATATGTCTGTGTACATCCATTCAG 57.557 34.615 0.00 0.28 40.52 3.02
248 249 8.806429 AAAATATGTCTGTGTACATCCATTCA 57.194 30.769 0.00 0.00 40.52 2.57
288 289 4.122046 GTGCATGTGTATGAGCATCTGTA 58.878 43.478 0.00 0.00 39.43 2.74
296 297 5.111293 TGAGTGTATGTGCATGTGTATGAG 58.889 41.667 0.00 0.00 36.36 2.90
297 298 5.083533 TGAGTGTATGTGCATGTGTATGA 57.916 39.130 0.00 0.00 36.36 2.15
306 307 9.019656 ACCTTTATAAAAATGAGTGTATGTGCA 57.980 29.630 0.00 0.00 0.00 4.57
322 323 4.451774 GGTGTGTGTGCGTACCTTTATAAA 59.548 41.667 0.00 0.00 0.00 1.40
323 324 3.995705 GGTGTGTGTGCGTACCTTTATAA 59.004 43.478 0.00 0.00 0.00 0.98
330 331 1.227438 ACTGGTGTGTGTGCGTACC 60.227 57.895 0.00 0.00 0.00 3.34
331 332 1.931551 CACTGGTGTGTGTGCGTAC 59.068 57.895 0.00 0.00 39.24 3.67
346 361 3.577919 AGGTTGTCCTAGACTTGACACT 58.422 45.455 6.94 1.32 43.12 3.55
374 392 3.118223 AGCTTCCTTATGGTGGAACTAGC 60.118 47.826 0.00 0.00 38.53 3.42
387 405 7.067008 GCATAACTCAAATGGTTAGCTTCCTTA 59.933 37.037 0.00 0.00 33.50 2.69
454 472 6.963049 AAACTACATACGAACTGAATGGAC 57.037 37.500 0.00 0.00 0.00 4.02
542 563 8.947115 GCTGTTTTCATAGTTGGTTTATCTAGT 58.053 33.333 0.00 0.00 0.00 2.57
573 594 3.683340 CCGCTCCTAACTTTAACTTGGAC 59.317 47.826 0.00 0.00 0.00 4.02
751 781 4.785453 CCAGGGAGACGGCCTTGC 62.785 72.222 0.00 0.00 33.96 4.01
803 836 7.334671 GGAGAAGAGATAACAAGAACCGAATTT 59.665 37.037 0.00 0.00 0.00 1.82
806 839 5.621555 CGGAGAAGAGATAACAAGAACCGAA 60.622 44.000 0.00 0.00 38.09 4.30
830 863 4.034510 CAGCAATTAGTTTCCTGGATCGAC 59.965 45.833 0.00 0.00 0.00 4.20
1424 1464 0.541863 GAAGACGGTGATGGATGGGT 59.458 55.000 0.00 0.00 0.00 4.51
1425 1465 0.833287 AGAAGACGGTGATGGATGGG 59.167 55.000 0.00 0.00 0.00 4.00
1428 1468 0.747255 CGGAGAAGACGGTGATGGAT 59.253 55.000 0.00 0.00 0.00 3.41
1446 1486 5.922544 GCATTCATCTCCCATTAATTTTCCG 59.077 40.000 0.00 0.00 0.00 4.30
1451 1491 8.716674 ATAGTTGCATTCATCTCCCATTAATT 57.283 30.769 0.00 0.00 0.00 1.40
1452 1492 8.716674 AATAGTTGCATTCATCTCCCATTAAT 57.283 30.769 0.00 0.00 0.00 1.40
1453 1493 9.639563 TTAATAGTTGCATTCATCTCCCATTAA 57.360 29.630 0.00 0.00 0.00 1.40
1454 1494 9.812347 ATTAATAGTTGCATTCATCTCCCATTA 57.188 29.630 0.00 0.00 0.00 1.90
1460 1500 8.226448 CCTCGAATTAATAGTTGCATTCATCTC 58.774 37.037 0.00 0.00 0.00 2.75
1478 1518 1.080366 TGCGTGCGTACCTCGAATT 60.080 52.632 0.00 0.00 42.86 2.17
1479 1519 1.804326 GTGCGTGCGTACCTCGAAT 60.804 57.895 0.00 0.00 42.86 3.34
1480 1520 2.429571 GTGCGTGCGTACCTCGAA 60.430 61.111 0.00 0.00 42.86 3.71
1481 1521 4.746951 CGTGCGTGCGTACCTCGA 62.747 66.667 7.19 0.00 42.86 4.04
1489 1529 3.982424 GAAATCCTGCGTGCGTGCG 62.982 63.158 0.00 0.00 37.81 5.34
1490 1530 2.202349 GAAATCCTGCGTGCGTGC 60.202 61.111 0.00 0.00 0.00 5.34
1491 1531 1.851021 TTGGAAATCCTGCGTGCGTG 61.851 55.000 0.44 0.00 36.82 5.34
1492 1532 0.960364 ATTGGAAATCCTGCGTGCGT 60.960 50.000 0.44 0.00 36.82 5.24
1493 1533 0.171007 AATTGGAAATCCTGCGTGCG 59.829 50.000 0.44 0.00 36.82 5.34
1494 1534 1.795162 CGAATTGGAAATCCTGCGTGC 60.795 52.381 0.44 0.00 36.82 5.34
1495 1535 1.737236 TCGAATTGGAAATCCTGCGTG 59.263 47.619 0.44 0.00 36.82 5.34
1582 1622 2.609244 GCCCAGCTTCTCGATGTAGATC 60.609 54.545 0.00 0.00 0.00 2.75
1609 1649 1.526686 CAGCAGCTTGGTGGTGTCA 60.527 57.895 19.67 0.00 45.23 3.58
1699 1739 3.157252 GAGATGGAGCAGGCCGGA 61.157 66.667 5.05 0.00 0.00 5.14
1773 1813 6.349115 GGCATGGATGATGAGCAGTTAATTAG 60.349 42.308 0.00 0.00 33.31 1.73
1868 1932 4.175337 TAGCCCTGCGACATGCCC 62.175 66.667 0.00 0.00 45.60 5.36
1877 1941 2.185004 TGAAGTTCTTGTAGCCCTGC 57.815 50.000 4.17 0.00 0.00 4.85
2048 2112 4.335315 TGCCGGTTAGCATTAAGATTTCTG 59.665 41.667 1.90 0.00 38.00 3.02
2188 2288 9.004231 ACAGATAAAAAGTACTCCCTCCATAAT 57.996 33.333 0.00 0.00 0.00 1.28
2192 2292 6.023603 AGACAGATAAAAAGTACTCCCTCCA 58.976 40.000 0.00 0.00 0.00 3.86
2301 2403 7.067615 GGAATTCCCTTGTCTAGAGAATTTTCC 59.932 40.741 14.03 10.98 0.00 3.13
2374 2476 0.665298 GCCGAGCATCATTTCCTTCC 59.335 55.000 0.00 0.00 33.17 3.46
2375 2477 1.332997 CAGCCGAGCATCATTTCCTTC 59.667 52.381 0.00 0.00 33.17 3.46
2376 2478 1.065199 TCAGCCGAGCATCATTTCCTT 60.065 47.619 0.00 0.00 33.17 3.36
2377 2479 0.543277 TCAGCCGAGCATCATTTCCT 59.457 50.000 0.00 0.00 33.17 3.36
2538 2640 8.939201 ATGACTGACTGATAAAGTACATGAAG 57.061 34.615 0.00 0.00 40.07 3.02
2546 2648 5.674052 AGCTGATGACTGACTGATAAAGT 57.326 39.130 0.00 0.00 43.85 2.66
2590 2692 7.230913 TGAACCGTGAACAAAAGGGATTATAAA 59.769 33.333 0.00 0.00 0.00 1.40
2606 2708 1.375396 CCGAGGCATGAACCGTGAA 60.375 57.895 0.00 0.00 33.69 3.18
2608 2710 2.819595 CCCGAGGCATGAACCGTG 60.820 66.667 0.00 0.00 33.69 4.94
2679 2782 6.652500 AAGGGGAACTTCTAGGACAAACCTT 61.652 44.000 0.00 0.00 39.87 3.50
2690 2793 7.023171 TGCTGTATAAAAAGGGGAACTTCTA 57.977 36.000 0.00 0.00 38.85 2.10
2699 2802 8.244113 CCTTTTAGAGTTGCTGTATAAAAAGGG 58.756 37.037 16.47 0.00 43.91 3.95
2700 2803 9.010029 TCCTTTTAGAGTTGCTGTATAAAAAGG 57.990 33.333 17.43 17.43 46.73 3.11
2710 2813 5.531634 TGCAAAATCCTTTTAGAGTTGCTG 58.468 37.500 6.97 0.00 39.61 4.41
2940 3047 8.754080 TCCGATTGTTGGAAAATAACCATTATT 58.246 29.630 0.00 0.00 37.43 1.40
2941 3048 8.299990 TCCGATTGTTGGAAAATAACCATTAT 57.700 30.769 0.00 0.00 37.26 1.28
2964 3071 1.922570 ACGCATCGTGTATGAACTCC 58.077 50.000 0.00 0.00 39.18 3.85
2976 3083 4.221342 CAAATATTCATTCCCACGCATCG 58.779 43.478 0.00 0.00 0.00 3.84
2982 3089 5.523369 GCACTAGCAAATATTCATTCCCAC 58.477 41.667 0.00 0.00 41.58 4.61
2983 3090 5.772825 GCACTAGCAAATATTCATTCCCA 57.227 39.130 0.00 0.00 41.58 4.37
3007 3114 5.537295 TCACTACTACTTTCACTGGCAAGTA 59.463 40.000 0.00 0.00 34.92 2.24
3042 3149 2.166664 GGAGTGGGTTCAGCTGTAGTAG 59.833 54.545 14.67 0.00 0.00 2.57
3126 3236 1.635663 CCGAGTTGTTCATCCCGCAC 61.636 60.000 0.00 0.00 0.00 5.34
3132 3242 1.726853 CAGGGTCCGAGTTGTTCATC 58.273 55.000 0.00 0.00 0.00 2.92
3216 3326 8.682936 AAAACCTGCATATATGAGTAGGAAAG 57.317 34.615 25.49 9.53 32.68 2.62
3260 3375 2.095516 TCAGAGATGCGAGCGATATGTC 60.096 50.000 0.00 0.00 0.00 3.06
3261 3376 1.882623 TCAGAGATGCGAGCGATATGT 59.117 47.619 0.00 0.00 0.00 2.29
3262 3377 2.249337 GTCAGAGATGCGAGCGATATG 58.751 52.381 0.00 0.00 0.00 1.78
3263 3378 1.135831 CGTCAGAGATGCGAGCGATAT 60.136 52.381 0.00 0.00 0.00 1.63
3269 3386 2.115595 GATGTTCGTCAGAGATGCGAG 58.884 52.381 0.00 0.00 36.00 5.03
3338 3455 1.666553 CTTGTCGTGCGCCACCTTA 60.667 57.895 4.18 0.00 0.00 2.69
3357 3474 3.993376 TATGCGGCGGGTGTTCGAC 62.993 63.158 9.78 0.00 34.28 4.20
3433 3550 2.423538 GCAAATCCGACAAATGCTAGGT 59.576 45.455 0.00 0.00 34.29 3.08
3503 3634 8.608844 ATTAGGCTACATACATTCAAGTTAGC 57.391 34.615 0.00 0.00 0.00 3.09
3513 3653 6.356556 TGCAACAGAATTAGGCTACATACAT 58.643 36.000 0.00 0.00 0.00 2.29
3515 3655 6.708054 AGATGCAACAGAATTAGGCTACATAC 59.292 38.462 0.00 0.00 0.00 2.39
3517 3657 5.688807 AGATGCAACAGAATTAGGCTACAT 58.311 37.500 0.00 0.00 0.00 2.29
3714 3858 4.935702 TCTGCTTTTTCATGGAGTGTTTG 58.064 39.130 0.00 0.00 0.00 2.93
3737 3911 2.965831 ACGCCTCATTCCATTAGCTCTA 59.034 45.455 0.00 0.00 0.00 2.43
3766 3940 1.787155 CTCTTCGTTCAGAACCACACG 59.213 52.381 7.76 0.00 34.66 4.49
4057 4240 4.409218 TACTGCGCCGTCGACACC 62.409 66.667 17.16 4.32 38.10 4.16
4102 4285 2.674220 GGCCACCTTCTCCTCCAGG 61.674 68.421 0.00 0.00 36.10 4.45
4235 4418 5.298777 TGAATCAATGTCATGTGTTGTGTCA 59.701 36.000 0.00 3.15 0.00 3.58
4237 4420 5.278610 CCTGAATCAATGTCATGTGTTGTGT 60.279 40.000 0.00 0.00 0.00 3.72
4253 4443 0.694771 AGGAGTGCTTGCCTGAATCA 59.305 50.000 0.00 0.00 32.06 2.57
4254 4444 3.566130 AGGAGTGCTTGCCTGAATC 57.434 52.632 0.00 0.00 32.06 2.52
4259 4449 0.901124 CTAGACAGGAGTGCTTGCCT 59.099 55.000 0.00 0.00 33.99 4.75
4260 4450 0.742635 GCTAGACAGGAGTGCTTGCC 60.743 60.000 0.00 0.00 0.00 4.52
4261 4451 0.742635 GGCTAGACAGGAGTGCTTGC 60.743 60.000 0.00 0.00 32.26 4.01
4262 4452 0.901124 AGGCTAGACAGGAGTGCTTG 59.099 55.000 0.00 0.00 0.00 4.01
4264 4454 0.901124 CAAGGCTAGACAGGAGTGCT 59.099 55.000 0.00 0.00 0.00 4.40
4265 4455 0.610687 ACAAGGCTAGACAGGAGTGC 59.389 55.000 0.00 0.00 0.00 4.40
4267 4457 2.452505 GAGACAAGGCTAGACAGGAGT 58.547 52.381 0.00 0.00 0.00 3.85
4269 4459 1.853963 GGAGACAAGGCTAGACAGGA 58.146 55.000 0.00 0.00 0.00 3.86
4309 4499 1.818642 GTCTCCAGAAGCTGCAATGT 58.181 50.000 1.02 0.00 0.00 2.71
4426 4638 4.009823 GTGCTACCACAAGCTCAAGCTG 62.010 54.545 5.06 2.92 44.85 4.24
4434 4646 0.035056 AGATGGGTGCTACCACAAGC 60.035 55.000 1.97 0.00 44.72 4.01
4580 6267 2.094338 CCTTTTTGCTGCATCCTTCTCC 60.094 50.000 1.84 0.00 0.00 3.71
4585 6272 1.206371 GCATCCTTTTTGCTGCATCCT 59.794 47.619 1.84 0.00 37.14 3.24
4586 6273 1.066716 TGCATCCTTTTTGCTGCATCC 60.067 47.619 1.84 0.00 39.54 3.51
4623 6341 9.435688 GCATTCCAGATTGTATGTATGTATGTA 57.564 33.333 0.00 0.00 0.00 2.29
4624 6342 7.391554 GGCATTCCAGATTGTATGTATGTATGT 59.608 37.037 0.00 0.00 0.00 2.29
4625 6343 7.413328 CGGCATTCCAGATTGTATGTATGTATG 60.413 40.741 0.00 0.00 0.00 2.39
4626 6344 6.595326 CGGCATTCCAGATTGTATGTATGTAT 59.405 38.462 0.00 0.00 0.00 2.29
4627 6345 5.931724 CGGCATTCCAGATTGTATGTATGTA 59.068 40.000 0.00 0.00 0.00 2.29
4628 6346 4.756642 CGGCATTCCAGATTGTATGTATGT 59.243 41.667 0.00 0.00 0.00 2.29
4629 6347 4.996758 TCGGCATTCCAGATTGTATGTATG 59.003 41.667 0.00 0.00 0.00 2.39
4630 6348 5.227569 TCGGCATTCCAGATTGTATGTAT 57.772 39.130 0.00 0.00 0.00 2.29
4631 6349 4.503123 CCTCGGCATTCCAGATTGTATGTA 60.503 45.833 0.00 0.00 0.00 2.29
4700 6421 8.181904 TCTCTGCTTCCAAGATAAAACAAAAT 57.818 30.769 0.00 0.00 0.00 1.82
4709 6430 6.111382 CAGTTTGATCTCTGCTTCCAAGATA 58.889 40.000 0.00 0.00 30.04 1.98
4715 6436 4.516698 TGAAACAGTTTGATCTCTGCTTCC 59.483 41.667 2.34 8.04 36.53 3.46
4728 6449 6.421801 GCTGCTAATTTCACATGAAACAGTTT 59.578 34.615 17.25 0.00 45.55 2.66
4750 6471 1.579932 CTTGCTTGGAGTGCTGCTG 59.420 57.895 0.00 0.00 0.00 4.41
4751 6472 2.266627 GCTTGCTTGGAGTGCTGCT 61.267 57.895 0.00 0.00 0.00 4.24
4757 6478 1.073897 GGACCTGCTTGCTTGGAGT 59.926 57.895 10.85 0.00 0.00 3.85
4762 6483 1.573108 TAGCTAGGACCTGCTTGCTT 58.427 50.000 19.34 2.96 40.35 3.91
4767 6488 1.467678 CGGCATAGCTAGGACCTGCT 61.468 60.000 10.11 18.50 42.67 4.24
4812 6533 8.648097 CATACAGTACAATTCTTCTACACACAC 58.352 37.037 0.00 0.00 0.00 3.82
4888 6612 5.050363 GTGTCATCACGTTTCAGTTACACAT 60.050 40.000 0.00 0.00 35.83 3.21
4901 6625 3.629855 TCACCAATTTTGTGTCATCACGT 59.370 39.130 5.12 0.00 46.49 4.49
4941 6667 1.841302 TACCCTTGTCCAGCTGCAGG 61.841 60.000 17.12 10.10 0.00 4.85
4950 6676 2.092914 CACAATCCTCCTACCCTTGTCC 60.093 54.545 0.00 0.00 0.00 4.02
4951 6677 2.092914 CCACAATCCTCCTACCCTTGTC 60.093 54.545 0.00 0.00 0.00 3.18
4952 6678 1.916181 CCACAATCCTCCTACCCTTGT 59.084 52.381 0.00 0.00 0.00 3.16
4953 6679 1.408822 GCCACAATCCTCCTACCCTTG 60.409 57.143 0.00 0.00 0.00 3.61
4954 6680 0.919710 GCCACAATCCTCCTACCCTT 59.080 55.000 0.00 0.00 0.00 3.95
4955 6681 0.253160 TGCCACAATCCTCCTACCCT 60.253 55.000 0.00 0.00 0.00 4.34
4956 6682 0.107165 GTGCCACAATCCTCCTACCC 60.107 60.000 0.00 0.00 0.00 3.69
4957 6683 0.618458 TGTGCCACAATCCTCCTACC 59.382 55.000 0.00 0.00 0.00 3.18
4958 6684 2.489938 TTGTGCCACAATCCTCCTAC 57.510 50.000 6.08 0.00 32.34 3.18
4983 6718 4.581824 ACCAAGCATATTGTCCAGCTATTG 59.418 41.667 0.00 0.00 36.07 1.90
4984 6719 4.796606 ACCAAGCATATTGTCCAGCTATT 58.203 39.130 0.00 0.00 36.07 1.73
4985 6720 4.103785 AGACCAAGCATATTGTCCAGCTAT 59.896 41.667 0.00 0.00 36.07 2.97
4986 6721 3.455910 AGACCAAGCATATTGTCCAGCTA 59.544 43.478 0.00 0.00 36.07 3.32
4988 6723 2.648059 AGACCAAGCATATTGTCCAGC 58.352 47.619 0.00 0.00 0.00 4.85
4989 6724 4.012374 ACAAGACCAAGCATATTGTCCAG 58.988 43.478 0.00 0.00 28.22 3.86
4991 6726 5.048083 TGAAACAAGACCAAGCATATTGTCC 60.048 40.000 0.00 0.00 33.17 4.02
4992 6727 5.858581 GTGAAACAAGACCAAGCATATTGTC 59.141 40.000 0.00 0.00 36.32 3.18
4999 6734 2.023673 CAGGTGAAACAAGACCAAGCA 58.976 47.619 0.00 0.00 39.98 3.91
5000 6735 1.338020 CCAGGTGAAACAAGACCAAGC 59.662 52.381 0.00 0.00 39.98 4.01
5001 6736 2.654863 ACCAGGTGAAACAAGACCAAG 58.345 47.619 0.00 0.00 39.98 3.61
5002 6737 2.818751 ACCAGGTGAAACAAGACCAA 57.181 45.000 0.00 0.00 39.98 3.67
5015 6786 2.917713 TGGGATGCAATTAACCAGGT 57.082 45.000 0.00 0.00 0.00 4.00
5024 6795 4.858850 TCTGTAGTTTCATGGGATGCAAT 58.141 39.130 0.00 0.00 0.00 3.56
5058 6829 1.202417 TGACAATACGCAGCTCTAGGC 60.202 52.381 0.00 0.00 42.19 3.93
5059 6830 2.544694 CCTGACAATACGCAGCTCTAGG 60.545 54.545 0.00 0.00 0.00 3.02
5074 6845 0.764271 TCACCATCACAAGCCTGACA 59.236 50.000 0.00 0.00 0.00 3.58
5094 6865 0.981183 ACTCCAGTTTATCCGTGCCA 59.019 50.000 0.00 0.00 0.00 4.92
5095 6866 2.973694 TACTCCAGTTTATCCGTGCC 57.026 50.000 0.00 0.00 0.00 5.01
5101 6872 8.296713 TCTGCAATTTGTTTACTCCAGTTTATC 58.703 33.333 0.00 0.00 0.00 1.75
5107 6884 6.272318 TGTTTCTGCAATTTGTTTACTCCAG 58.728 36.000 0.00 0.00 0.00 3.86
5129 6906 2.097825 GGATTGCAGGCAGAATTCTGT 58.902 47.619 30.88 14.04 45.45 3.41
5132 6909 2.097825 ACAGGATTGCAGGCAGAATTC 58.902 47.619 0.00 0.00 0.00 2.17
5154 6947 3.827008 TCAGCCTGCCTGTCTTATAAG 57.173 47.619 6.11 6.11 42.38 1.73
5177 6970 3.565961 TTGCGCTGAATCCTGCCCA 62.566 57.895 9.73 0.00 34.24 5.36
5184 6977 4.713854 AAATGTGTTTTTGCGCTGAATC 57.286 36.364 9.73 3.31 0.00 2.52
5253 7046 6.033341 TCGTTTTCCTGACAAATGTGAAAAG 58.967 36.000 9.30 6.01 36.07 2.27
5339 7134 1.000771 GAGAGCCCCCTTTGGTTCC 60.001 63.158 0.00 0.00 36.36 3.62
5347 7142 0.627469 AGAGAGAGAGAGAGCCCCCT 60.627 60.000 0.00 0.00 0.00 4.79
5370 7165 3.128764 CGATGTCTTGCTACTAGGACACA 59.871 47.826 0.00 0.00 40.71 3.72
5371 7166 3.489398 CCGATGTCTTGCTACTAGGACAC 60.489 52.174 0.00 0.00 40.71 3.67
5372 7167 2.688446 CCGATGTCTTGCTACTAGGACA 59.312 50.000 0.00 0.00 41.84 4.02
5450 7245 6.719365 AGTCTTTTCACTGTTTTTCATCTCG 58.281 36.000 0.00 0.00 0.00 4.04
5461 7258 6.620733 GCATAACGCAATAGTCTTTTCACTGT 60.621 38.462 0.00 0.00 41.79 3.55
5487 7291 1.937191 CCAAGGCCCAGGTTTGTAAT 58.063 50.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.