Multiple sequence alignment - TraesCS6A01G096700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G096700 chr6A 100.000 3083 0 0 1 3083 64067056 64063974 0.000000e+00 5694
1 TraesCS6A01G096700 chr6A 87.992 991 88 5 1849 2814 64173802 64172818 0.000000e+00 1142
2 TraesCS6A01G096700 chr6A 96.250 80 3 0 1 80 64081984 64081905 6.940000e-27 132
3 TraesCS6A01G096700 chr6D 93.722 1577 66 13 117 1673 53145409 53143846 0.000000e+00 2333
4 TraesCS6A01G096700 chr6D 94.949 1267 41 1 1840 3083 53143862 53142596 0.000000e+00 1964
5 TraesCS6A01G096700 chr6D 87.400 1127 99 26 1843 2943 51343893 51345002 0.000000e+00 1254
6 TraesCS6A01G096700 chr6D 88.202 1051 103 8 638 1673 51068139 51069183 0.000000e+00 1234
7 TraesCS6A01G096700 chr6D 86.933 1125 107 24 1843 2943 51069170 51070278 0.000000e+00 1227
8 TraesCS6A01G096700 chr6D 88.500 1000 95 11 688 1673 51342913 51343906 0.000000e+00 1192
9 TraesCS6A01G096700 chr6D 88.000 975 87 9 1849 2799 51075007 51075975 0.000000e+00 1125
10 TraesCS6A01G096700 chr6D 87.807 976 85 11 1849 2799 51349788 51350754 0.000000e+00 1112
11 TraesCS6A01G096700 chr6D 85.153 229 16 6 2858 3083 51075991 51076204 5.180000e-53 219
12 TraesCS6A01G096700 chr6D 81.624 234 22 7 2853 3083 50951070 50951285 1.140000e-39 174
13 TraesCS6A01G096700 chr6D 98.438 64 1 0 1 64 53146913 53146850 2.510000e-21 113
14 TraesCS6A01G096700 chr6B 93.617 1269 48 15 1840 3083 120131932 120130672 0.000000e+00 1864
15 TraesCS6A01G096700 chr6B 90.372 1049 82 10 638 1673 120132958 120131916 0.000000e+00 1360
16 TraesCS6A01G096700 chr6B 87.011 1124 100 26 1849 2943 120354125 120353019 0.000000e+00 1225
17 TraesCS6A01G096700 chr6B 87.464 1045 113 8 640 1673 120355155 120354118 0.000000e+00 1188
18 TraesCS6A01G096700 chr6B 88.496 991 83 5 1849 2814 120594450 120593466 0.000000e+00 1170
19 TraesCS6A01G096700 chr5B 88.989 1108 103 8 556 1652 617170583 617171682 0.000000e+00 1352
20 TraesCS6A01G096700 chr5B 85.814 1283 124 36 1841 3083 60825001 60823737 0.000000e+00 1308
21 TraesCS6A01G096700 chr1B 86.762 1254 114 28 1843 3083 46692936 46694150 0.000000e+00 1349
22 TraesCS6A01G096700 chr1B 86.239 1279 122 29 1841 3083 4596587 4595327 0.000000e+00 1338
23 TraesCS6A01G096700 chr1B 87.584 1184 109 25 1849 3001 46829333 46828157 0.000000e+00 1338
24 TraesCS6A01G096700 chr1B 85.759 1271 122 22 1841 3083 4518012 4516773 0.000000e+00 1290
25 TraesCS6A01G096700 chr1B 85.281 1121 128 23 1989 3083 4798955 4797846 0.000000e+00 1122
26 TraesCS6A01G096700 chr1B 86.965 1028 97 26 1841 2844 70233791 70234805 0.000000e+00 1122
27 TraesCS6A01G096700 chr1B 86.416 1038 112 15 638 1652 4110121 4111152 0.000000e+00 1109
28 TraesCS6A01G096700 chr1B 85.005 1107 121 23 571 1652 4519110 4518024 0.000000e+00 1083
29 TraesCS6A01G096700 chr1B 97.802 182 1 2 1666 1845 321238231 321238411 8.300000e-81 311
30 TraesCS6A01G096700 chr1B 98.315 178 2 1 1671 1848 456742195 456742371 8.300000e-81 311
31 TraesCS6A01G096700 chr1D 88.122 1145 111 17 1841 2976 33985314 33986442 0.000000e+00 1338
32 TraesCS6A01G096700 chr1A 86.006 1272 135 26 1841 3083 2944226 2945483 0.000000e+00 1323
33 TraesCS6A01G096700 chr1A 85.949 1096 115 26 1841 2908 3014003 3015087 0.000000e+00 1134
34 TraesCS6A01G096700 chr1A 86.667 210 19 5 2864 3070 3015094 3015297 1.110000e-54 224
35 TraesCS6A01G096700 chr5D 86.528 1247 111 37 1841 3044 57820523 57821755 0.000000e+00 1319
36 TraesCS6A01G096700 chr3D 85.647 1268 133 30 1849 3083 560023893 560022642 0.000000e+00 1288
37 TraesCS6A01G096700 chr3D 87.012 1024 104 14 652 1652 560024928 560023911 0.000000e+00 1127
38 TraesCS6A01G096700 chr7D 99.425 174 1 0 1672 1845 426750103 426750276 1.780000e-82 316
39 TraesCS6A01G096700 chr7B 99.422 173 1 0 1674 1846 472508892 472508720 6.420000e-82 315
40 TraesCS6A01G096700 chr4B 98.333 180 2 1 1660 1839 599230168 599230346 6.420000e-82 315
41 TraesCS6A01G096700 chr4B 80.392 408 47 15 2688 3083 630238448 630238834 2.340000e-71 279
42 TraesCS6A01G096700 chr4A 99.422 173 1 0 1669 1841 564649496 564649668 6.420000e-82 315
43 TraesCS6A01G096700 chr4A 97.790 181 2 2 1660 1840 602875146 602875324 8.300000e-81 311
44 TraesCS6A01G096700 chr7A 97.790 181 3 1 1674 1854 85195867 85196046 8.300000e-81 311
45 TraesCS6A01G096700 chr2A 96.791 187 3 3 1674 1859 116445919 116446103 2.990000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G096700 chr6A 64063974 64067056 3082 True 5694.0 5694 100.0000 1 3083 1 chr6A.!!$R1 3082
1 TraesCS6A01G096700 chr6A 64172818 64173802 984 True 1142.0 1142 87.9920 1849 2814 1 chr6A.!!$R3 965
2 TraesCS6A01G096700 chr6D 53142596 53146913 4317 True 1470.0 2333 95.7030 1 3083 3 chr6D.!!$R1 3082
3 TraesCS6A01G096700 chr6D 51068139 51070278 2139 False 1230.5 1234 87.5675 638 2943 2 chr6D.!!$F3 2305
4 TraesCS6A01G096700 chr6D 51342913 51345002 2089 False 1223.0 1254 87.9500 688 2943 2 chr6D.!!$F5 2255
5 TraesCS6A01G096700 chr6D 51349788 51350754 966 False 1112.0 1112 87.8070 1849 2799 1 chr6D.!!$F2 950
6 TraesCS6A01G096700 chr6D 51075007 51076204 1197 False 672.0 1125 86.5765 1849 3083 2 chr6D.!!$F4 1234
7 TraesCS6A01G096700 chr6B 120130672 120132958 2286 True 1612.0 1864 91.9945 638 3083 2 chr6B.!!$R2 2445
8 TraesCS6A01G096700 chr6B 120353019 120355155 2136 True 1206.5 1225 87.2375 640 2943 2 chr6B.!!$R3 2303
9 TraesCS6A01G096700 chr6B 120593466 120594450 984 True 1170.0 1170 88.4960 1849 2814 1 chr6B.!!$R1 965
10 TraesCS6A01G096700 chr5B 617170583 617171682 1099 False 1352.0 1352 88.9890 556 1652 1 chr5B.!!$F1 1096
11 TraesCS6A01G096700 chr5B 60823737 60825001 1264 True 1308.0 1308 85.8140 1841 3083 1 chr5B.!!$R1 1242
12 TraesCS6A01G096700 chr1B 46692936 46694150 1214 False 1349.0 1349 86.7620 1843 3083 1 chr1B.!!$F2 1240
13 TraesCS6A01G096700 chr1B 4595327 4596587 1260 True 1338.0 1338 86.2390 1841 3083 1 chr1B.!!$R1 1242
14 TraesCS6A01G096700 chr1B 46828157 46829333 1176 True 1338.0 1338 87.5840 1849 3001 1 chr1B.!!$R3 1152
15 TraesCS6A01G096700 chr1B 4516773 4519110 2337 True 1186.5 1290 85.3820 571 3083 2 chr1B.!!$R4 2512
16 TraesCS6A01G096700 chr1B 4797846 4798955 1109 True 1122.0 1122 85.2810 1989 3083 1 chr1B.!!$R2 1094
17 TraesCS6A01G096700 chr1B 70233791 70234805 1014 False 1122.0 1122 86.9650 1841 2844 1 chr1B.!!$F3 1003
18 TraesCS6A01G096700 chr1B 4110121 4111152 1031 False 1109.0 1109 86.4160 638 1652 1 chr1B.!!$F1 1014
19 TraesCS6A01G096700 chr1D 33985314 33986442 1128 False 1338.0 1338 88.1220 1841 2976 1 chr1D.!!$F1 1135
20 TraesCS6A01G096700 chr1A 2944226 2945483 1257 False 1323.0 1323 86.0060 1841 3083 1 chr1A.!!$F1 1242
21 TraesCS6A01G096700 chr1A 3014003 3015297 1294 False 679.0 1134 86.3080 1841 3070 2 chr1A.!!$F2 1229
22 TraesCS6A01G096700 chr5D 57820523 57821755 1232 False 1319.0 1319 86.5280 1841 3044 1 chr5D.!!$F1 1203
23 TraesCS6A01G096700 chr3D 560022642 560024928 2286 True 1207.5 1288 86.3295 652 3083 2 chr3D.!!$R1 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 1735 0.109412 ACACTCTACCGCGTGCTTAC 60.109 55.0 4.92 0.0 34.58 2.34 F
1712 3200 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.00 0.0 34.10 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 3226 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 R
2902 4513 1.306148 GCCTACTTATGCCGGTTTCC 58.694 55.0 1.90 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 7.687941 TTCTTACTTCTCCAGCCTTAATTTG 57.312 36.000 0.00 0.00 0.00 2.32
83 1495 0.320697 GTTCGCTGGTAGTGGTTCCT 59.679 55.000 0.00 0.00 0.00 3.36
91 1503 3.952323 CTGGTAGTGGTTCCTCGATTCTA 59.048 47.826 0.00 0.00 0.00 2.10
92 1504 3.698040 TGGTAGTGGTTCCTCGATTCTAC 59.302 47.826 0.00 0.00 0.00 2.59
93 1505 3.698040 GGTAGTGGTTCCTCGATTCTACA 59.302 47.826 0.00 0.00 0.00 2.74
94 1506 4.341520 GGTAGTGGTTCCTCGATTCTACAT 59.658 45.833 0.00 0.00 0.00 2.29
95 1507 4.392921 AGTGGTTCCTCGATTCTACATG 57.607 45.455 0.00 0.00 0.00 3.21
96 1508 2.866762 GTGGTTCCTCGATTCTACATGC 59.133 50.000 0.00 0.00 0.00 4.06
98 1510 3.126831 GGTTCCTCGATTCTACATGCAG 58.873 50.000 0.00 0.00 0.00 4.41
100 1512 4.202121 GGTTCCTCGATTCTACATGCAGTA 60.202 45.833 0.00 0.00 0.00 2.74
101 1513 4.569761 TCCTCGATTCTACATGCAGTAC 57.430 45.455 0.00 0.00 0.00 2.73
102 1514 3.951680 TCCTCGATTCTACATGCAGTACA 59.048 43.478 0.00 0.00 0.00 2.90
103 1515 4.584743 TCCTCGATTCTACATGCAGTACAT 59.415 41.667 0.00 0.00 40.66 2.29
116 1528 4.355437 TGCAGTACATGGTTTTTGTTTCG 58.645 39.130 0.00 0.00 0.00 3.46
117 1529 3.733727 GCAGTACATGGTTTTTGTTTCGG 59.266 43.478 0.00 0.00 0.00 4.30
118 1530 4.735283 GCAGTACATGGTTTTTGTTTCGGT 60.735 41.667 0.00 0.00 0.00 4.69
119 1531 5.505985 GCAGTACATGGTTTTTGTTTCGGTA 60.506 40.000 0.00 0.00 0.00 4.02
120 1532 6.496571 CAGTACATGGTTTTTGTTTCGGTAA 58.503 36.000 0.00 0.00 0.00 2.85
121 1533 6.973474 CAGTACATGGTTTTTGTTTCGGTAAA 59.027 34.615 0.00 0.00 0.00 2.01
122 1534 7.650104 CAGTACATGGTTTTTGTTTCGGTAAAT 59.350 33.333 0.00 0.00 0.00 1.40
123 1535 7.863877 AGTACATGGTTTTTGTTTCGGTAAATC 59.136 33.333 0.00 0.00 0.00 2.17
124 1536 6.811954 ACATGGTTTTTGTTTCGGTAAATCT 58.188 32.000 0.00 0.00 0.00 2.40
125 1537 7.942990 ACATGGTTTTTGTTTCGGTAAATCTA 58.057 30.769 0.00 0.00 0.00 1.98
126 1538 8.079809 ACATGGTTTTTGTTTCGGTAAATCTAG 58.920 33.333 0.00 0.00 0.00 2.43
146 1558 6.660800 TCTAGTAGTATAATCATAGGGCGCT 58.339 40.000 7.64 8.86 0.00 5.92
189 1601 0.179119 GTCGATGAACCCCGAATCGT 60.179 55.000 0.82 0.00 42.83 3.73
196 1608 2.202932 CCCCGAATCGTGAGCTGG 60.203 66.667 0.82 0.00 0.00 4.85
225 1637 2.818169 GCCCGAGCCCATGGTATCA 61.818 63.158 11.73 0.00 0.00 2.15
241 1653 1.486997 ATCATCCAGCCCCGGATCTG 61.487 60.000 0.73 9.63 44.28 2.90
245 1657 2.511452 CCAGCCCCGGATCTGGTAG 61.511 68.421 25.08 11.26 43.66 3.18
249 1661 1.233369 CCCCGGATCTGGTAGGTCT 59.767 63.158 19.51 0.00 0.00 3.85
258 1670 1.305802 TGGTAGGTCTCGCCACCAT 60.306 57.895 5.51 0.00 40.79 3.55
298 1710 2.679132 CTACATCTAGCGCCGCCGTT 62.679 60.000 4.98 0.00 36.67 4.44
299 1711 2.287457 TACATCTAGCGCCGCCGTTT 62.287 55.000 4.98 0.00 36.67 3.60
308 1720 2.723719 GCCGCCGTTTCGTACACTC 61.724 63.158 0.00 0.00 0.00 3.51
310 1722 0.168788 CCGCCGTTTCGTACACTCTA 59.831 55.000 0.00 0.00 0.00 2.43
313 1725 1.887320 CCGTTTCGTACACTCTACCG 58.113 55.000 0.00 0.00 0.00 4.02
315 1727 1.253999 GTTTCGTACACTCTACCGCG 58.746 55.000 0.00 0.00 0.00 6.46
322 1735 0.109412 ACACTCTACCGCGTGCTTAC 60.109 55.000 4.92 0.00 34.58 2.34
338 1751 2.289694 GCTTACTTCCAGTGGCAGAGAA 60.290 50.000 16.33 8.07 31.81 2.87
403 1828 1.541310 CCTGCACCCGGTTCAGACTA 61.541 60.000 17.82 0.00 28.74 2.59
442 1867 2.098934 TGCTTTTCTTGTTGTCGCATGT 59.901 40.909 0.00 0.00 0.00 3.21
445 1870 3.607422 TTTCTTGTTGTCGCATGTCTG 57.393 42.857 0.00 0.00 0.00 3.51
446 1871 2.238942 TCTTGTTGTCGCATGTCTGT 57.761 45.000 0.00 0.00 0.00 3.41
455 1880 3.002862 TGTCGCATGTCTGTTTTGGTAAC 59.997 43.478 0.00 0.00 0.00 2.50
462 1887 5.092554 TGTCTGTTTTGGTAACTGACTCA 57.907 39.130 20.59 6.53 44.34 3.41
465 1890 3.876914 CTGTTTTGGTAACTGACTCAGCA 59.123 43.478 5.92 0.00 34.37 4.41
482 1907 4.958509 TCAGCAATGGCAAAAGAAAATGA 58.041 34.783 0.00 0.00 44.61 2.57
483 1908 4.992319 TCAGCAATGGCAAAAGAAAATGAG 59.008 37.500 0.00 0.00 44.61 2.90
488 1913 3.233507 TGGCAAAAGAAAATGAGAGGCT 58.766 40.909 0.00 0.00 0.00 4.58
494 1923 3.347077 AGAAAATGAGAGGCTGGACAG 57.653 47.619 0.00 0.00 0.00 3.51
532 1962 3.188460 GTCGCTTCTCTTTGGTAATTGCA 59.812 43.478 0.00 0.00 0.00 4.08
534 1964 4.094887 TCGCTTCTCTTTGGTAATTGCATC 59.905 41.667 0.00 0.00 0.00 3.91
542 1972 5.822519 TCTTTGGTAATTGCATCGATTAGCT 59.177 36.000 15.93 0.00 38.38 3.32
558 1988 7.047891 TCGATTAGCTCCACAACTGATTATTT 58.952 34.615 0.00 0.00 0.00 1.40
564 1994 8.159344 AGCTCCACAACTGATTATTTATTAGC 57.841 34.615 0.00 0.00 0.00 3.09
569 1999 8.892723 CCACAACTGATTATTTATTAGCTGTCA 58.107 33.333 0.00 0.00 29.58 3.58
616 2046 4.244066 CACATGAGTCTTGTCTTGAGGAG 58.756 47.826 8.63 0.00 0.00 3.69
617 2047 3.900601 ACATGAGTCTTGTCTTGAGGAGT 59.099 43.478 0.00 0.00 0.00 3.85
618 2048 4.346418 ACATGAGTCTTGTCTTGAGGAGTT 59.654 41.667 0.00 0.00 0.00 3.01
699 2133 5.661458 TGTTATTCAGGCTCTGCTACTTAC 58.339 41.667 0.00 0.00 0.00 2.34
864 2323 6.759827 GCCCAAAGTTCGTCAGTATATTCTTA 59.240 38.462 0.00 0.00 0.00 2.10
866 2325 7.042658 CCCAAAGTTCGTCAGTATATTCTTAGC 60.043 40.741 0.00 0.00 0.00 3.09
873 2332 8.744008 TCGTCAGTATATTCTTAGCAATTAGC 57.256 34.615 0.00 0.00 46.19 3.09
958 2432 3.621268 GTCCAGCTTTTTGGTTGTTTTCC 59.379 43.478 0.00 0.00 39.35 3.13
1129 2613 1.840635 GGAGTCAAAGGGGTGCTATCT 59.159 52.381 0.00 0.00 0.00 1.98
1160 2644 1.416030 TGGTCTTTGCACTGCTACAGA 59.584 47.619 1.98 0.00 35.18 3.41
1409 2894 5.654650 TGAACTCCACACCACAAATAACTTT 59.345 36.000 0.00 0.00 0.00 2.66
1569 3054 7.265673 AGAATTGCAAAGGAATCAATCATCAG 58.734 34.615 1.71 0.00 30.84 2.90
1666 3154 8.974060 TGATTTTTCTTTAGGTTGTGAGTACT 57.026 30.769 0.00 0.00 0.00 2.73
1672 3160 9.871238 TTTCTTTAGGTTGTGAGTACTATGATC 57.129 33.333 0.00 0.00 0.00 2.92
1673 3161 7.704271 TCTTTAGGTTGTGAGTACTATGATCG 58.296 38.462 0.00 0.00 0.00 3.69
1674 3162 7.555195 TCTTTAGGTTGTGAGTACTATGATCGA 59.445 37.037 0.00 0.00 0.00 3.59
1675 3163 5.759506 AGGTTGTGAGTACTATGATCGAG 57.240 43.478 0.00 0.00 0.00 4.04
1676 3164 4.580995 AGGTTGTGAGTACTATGATCGAGG 59.419 45.833 0.00 0.00 0.00 4.63
1677 3165 4.261656 GGTTGTGAGTACTATGATCGAGGG 60.262 50.000 0.00 0.00 0.00 4.30
1678 3166 2.885266 TGTGAGTACTATGATCGAGGGC 59.115 50.000 0.00 0.00 0.00 5.19
1679 3167 2.885266 GTGAGTACTATGATCGAGGGCA 59.115 50.000 0.00 0.00 0.00 5.36
1680 3168 3.057876 GTGAGTACTATGATCGAGGGCAG 60.058 52.174 0.00 0.00 0.00 4.85
1681 3169 2.490115 GAGTACTATGATCGAGGGCAGG 59.510 54.545 0.00 0.00 0.00 4.85
1682 3170 1.067495 GTACTATGATCGAGGGCAGGC 60.067 57.143 0.00 0.00 0.00 4.85
1683 3171 1.294780 CTATGATCGAGGGCAGGCC 59.705 63.158 4.33 4.33 0.00 5.19
1684 3172 1.152247 TATGATCGAGGGCAGGCCT 60.152 57.895 17.36 17.36 36.10 5.19
1685 3173 1.475169 TATGATCGAGGGCAGGCCTG 61.475 60.000 29.34 29.34 36.10 4.85
1686 3174 4.247380 GATCGAGGGCAGGCCTGG 62.247 72.222 33.46 20.32 36.10 4.45
1699 3187 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
1700 3188 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
1701 3189 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
1702 3190 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
1703 3191 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
1704 3192 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
1705 3193 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
1706 3194 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
1707 3195 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
1708 3196 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
1709 3197 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
1710 3198 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
1711 3199 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
1712 3200 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
1713 3201 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
1714 3202 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
1715 3203 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
1716 3204 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
1717 3205 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
1718 3206 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
1719 3207 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
1720 3208 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
1721 3209 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
1722 3210 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
1723 3211 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
1724 3212 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
1725 3213 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
1726 3214 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
1727 3215 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
1728 3216 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
1729 3217 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
1730 3218 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
1731 3219 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
1732 3220 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
1733 3221 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
1734 3222 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
1735 3223 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
1736 3224 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
1747 3235 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
1748 3236 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
1749 3237 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
1750 3238 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
1751 3239 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
1752 3240 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
1753 3241 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
1754 3242 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
1755 3243 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
1756 3244 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
1757 3245 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
1758 3246 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
1759 3247 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
1760 3248 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
1770 3258 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
1771 3259 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
1772 3260 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
1773 3261 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
1774 3262 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
1775 3263 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
1776 3264 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
1777 3265 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
1778 3266 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
1779 3267 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
1780 3268 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
1781 3269 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
1782 3270 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
1783 3271 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
1784 3272 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
1785 3273 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
1786 3274 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
1787 3275 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
1788 3276 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
1789 3277 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
1790 3278 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
1791 3279 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
1792 3280 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
1793 3281 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
1794 3282 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
1795 3283 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
1796 3284 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
1797 3285 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
1798 3286 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
1799 3287 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
1800 3288 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
1801 3289 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
1802 3290 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
1804 3292 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
1805 3293 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
1806 3294 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
1807 3295 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
1808 3296 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
1809 3297 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
1810 3298 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
1817 3305 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
1818 3306 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
1819 3307 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
1820 3308 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
1821 3309 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
1822 3310 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
1823 3311 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
1824 3312 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
1825 3313 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
1826 3314 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
1827 3315 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
1828 3316 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
1829 3317 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
1830 3318 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
1831 3319 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
1832 3320 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
1833 3321 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
1834 3322 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
1835 3323 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
1836 3324 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
1837 3325 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
1838 3326 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
1839 3327 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
1840 3328 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
1841 3329 0.954452 GCACTGGGTCTGTCCTTTTG 59.046 55.000 0.00 0.00 36.25 2.44
1846 3334 1.843851 TGGGTCTGTCCTTTTGTGAGT 59.156 47.619 0.00 0.00 36.25 3.41
2082 3570 6.735694 GCAACCTTAAAAGCATCTCACTTTGA 60.736 38.462 0.00 0.00 37.42 2.69
2353 3841 1.344803 TGAAGGCCCTCTCATCCTCAT 60.345 52.381 0.00 0.00 0.00 2.90
2457 3946 1.899814 AGTAATCTCACACTTCGGGCA 59.100 47.619 0.00 0.00 0.00 5.36
2529 4018 8.660373 CATAAGTTAGAGTCTTTGGTCATTGAC 58.340 37.037 8.34 8.34 0.00 3.18
2705 4225 1.210931 CATTGGACAAGGCTGTGCG 59.789 57.895 0.00 0.00 46.32 5.34
2752 4279 3.013921 TGTCTGAACTTTTGTCGCCTTT 58.986 40.909 0.00 0.00 0.00 3.11
2799 4334 7.663081 TCCTTTATGGCAGTCTAATGATGAATC 59.337 37.037 0.00 0.00 35.26 2.52
2800 4335 7.446319 CCTTTATGGCAGTCTAATGATGAATCA 59.554 37.037 0.00 0.00 41.70 2.57
2902 4513 1.822990 TCTACCCTCTGTAGCCGTTTG 59.177 52.381 0.00 0.00 45.56 2.93
3063 4694 3.185246 ACATCTGCCTTCTATGTTCGG 57.815 47.619 0.00 0.00 29.68 4.30
3066 4697 1.480954 TCTGCCTTCTATGTTCGGGTC 59.519 52.381 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.320697 AGGAACCACTACCAGCGAAC 59.679 55.000 0.00 0.00 0.00 3.95
93 1505 4.981674 CGAAACAAAAACCATGTACTGCAT 59.018 37.500 0.00 0.00 38.60 3.96
94 1506 4.355437 CGAAACAAAAACCATGTACTGCA 58.645 39.130 0.00 0.00 0.00 4.41
95 1507 3.733727 CCGAAACAAAAACCATGTACTGC 59.266 43.478 0.00 0.00 0.00 4.40
96 1508 4.927422 ACCGAAACAAAAACCATGTACTG 58.073 39.130 0.00 0.00 0.00 2.74
98 1510 7.863877 AGATTTACCGAAACAAAAACCATGTAC 59.136 33.333 0.00 0.00 0.00 2.90
100 1512 6.811954 AGATTTACCGAAACAAAAACCATGT 58.188 32.000 0.00 0.00 0.00 3.21
101 1513 8.079809 ACTAGATTTACCGAAACAAAAACCATG 58.920 33.333 0.00 0.00 0.00 3.66
102 1514 8.173542 ACTAGATTTACCGAAACAAAAACCAT 57.826 30.769 0.00 0.00 0.00 3.55
103 1515 7.571080 ACTAGATTTACCGAAACAAAAACCA 57.429 32.000 0.00 0.00 0.00 3.67
104 1516 8.777413 ACTACTAGATTTACCGAAACAAAAACC 58.223 33.333 0.00 0.00 0.00 3.27
119 1531 8.414778 GCGCCCTATGATTATACTACTAGATTT 58.585 37.037 0.00 0.00 0.00 2.17
120 1532 7.780745 AGCGCCCTATGATTATACTACTAGATT 59.219 37.037 2.29 0.00 0.00 2.40
121 1533 7.291566 AGCGCCCTATGATTATACTACTAGAT 58.708 38.462 2.29 0.00 0.00 1.98
122 1534 6.660800 AGCGCCCTATGATTATACTACTAGA 58.339 40.000 2.29 0.00 0.00 2.43
123 1535 6.768861 AGAGCGCCCTATGATTATACTACTAG 59.231 42.308 2.29 0.00 0.00 2.57
124 1536 6.542735 CAGAGCGCCCTATGATTATACTACTA 59.457 42.308 2.29 0.00 32.01 1.82
125 1537 5.358442 CAGAGCGCCCTATGATTATACTACT 59.642 44.000 2.29 0.00 32.01 2.57
126 1538 5.357314 TCAGAGCGCCCTATGATTATACTAC 59.643 44.000 2.29 0.00 34.57 2.73
146 1558 0.030638 GCGCTTTTGCCAGTTTCAGA 59.969 50.000 0.00 0.00 43.93 3.27
241 1653 1.117150 TTATGGTGGCGAGACCTACC 58.883 55.000 5.04 0.00 40.22 3.18
243 1655 1.754803 CAGTTATGGTGGCGAGACCTA 59.245 52.381 5.04 0.00 40.22 3.08
245 1657 1.090052 GCAGTTATGGTGGCGAGACC 61.090 60.000 0.00 0.00 39.84 3.85
249 1661 1.220749 GGAGCAGTTATGGTGGCGA 59.779 57.895 0.00 0.00 37.25 5.54
258 1670 4.143333 GAGCGGCCGGAGCAGTTA 62.143 66.667 29.38 0.00 42.56 2.24
298 1710 0.166597 CACGCGGTAGAGTGTACGAA 59.833 55.000 12.47 0.00 42.14 3.85
299 1711 1.789751 CACGCGGTAGAGTGTACGA 59.210 57.895 12.47 0.00 42.14 3.43
308 1720 0.108992 TGGAAGTAAGCACGCGGTAG 60.109 55.000 12.47 0.13 0.00 3.18
310 1722 1.374252 CTGGAAGTAAGCACGCGGT 60.374 57.895 12.47 0.00 0.00 5.68
322 1735 1.163554 GCTTTCTCTGCCACTGGAAG 58.836 55.000 0.00 0.00 42.29 3.46
403 1828 6.474918 AAAGCAGGGGAGATTAATCCATAT 57.525 37.500 11.92 0.00 41.52 1.78
442 1867 4.127171 GCTGAGTCAGTTACCAAAACAGA 58.873 43.478 21.06 0.00 33.43 3.41
445 1870 4.893424 TTGCTGAGTCAGTTACCAAAAC 57.107 40.909 21.06 2.14 33.43 2.43
446 1871 4.278170 CCATTGCTGAGTCAGTTACCAAAA 59.722 41.667 21.06 5.78 33.43 2.44
455 1880 2.555325 TCTTTTGCCATTGCTGAGTCAG 59.445 45.455 16.21 16.21 38.71 3.51
462 1887 5.217978 TCTCATTTTCTTTTGCCATTGCT 57.782 34.783 0.00 0.00 38.71 3.91
465 1890 4.285260 AGCCTCTCATTTTCTTTTGCCATT 59.715 37.500 0.00 0.00 0.00 3.16
482 1907 0.042431 ATCACCTCTGTCCAGCCTCT 59.958 55.000 0.00 0.00 0.00 3.69
483 1908 1.686052 CTATCACCTCTGTCCAGCCTC 59.314 57.143 0.00 0.00 0.00 4.70
488 1913 4.532126 ACAACAATCTATCACCTCTGTCCA 59.468 41.667 0.00 0.00 0.00 4.02
494 1923 3.786635 AGCGACAACAATCTATCACCTC 58.213 45.455 0.00 0.00 0.00 3.85
532 1962 4.679373 ATCAGTTGTGGAGCTAATCGAT 57.321 40.909 0.00 0.00 0.00 3.59
534 1964 6.851222 AATAATCAGTTGTGGAGCTAATCG 57.149 37.500 0.00 0.00 0.00 3.34
542 1972 9.109393 GACAGCTAATAAATAATCAGTTGTGGA 57.891 33.333 0.00 0.00 31.89 4.02
558 1988 9.914834 AACCTATTTATTTGGTGACAGCTAATA 57.085 29.630 14.73 14.73 44.54 0.98
564 1994 7.607991 AGTCTGAACCTATTTATTTGGTGACAG 59.392 37.037 0.00 0.00 44.54 3.51
569 1999 6.599638 GCTCAGTCTGAACCTATTTATTTGGT 59.400 38.462 3.67 0.00 35.29 3.67
650 2080 4.842911 CGAACGAAGAGAATGCAAAGAAAG 59.157 41.667 0.00 0.00 0.00 2.62
659 2089 7.287950 TGAATAACAAACGAACGAAGAGAATG 58.712 34.615 0.14 0.00 0.00 2.67
699 2133 5.292589 ACATCATTAAACTAAACTACCGCCG 59.707 40.000 0.00 0.00 0.00 6.46
826 2275 5.354234 CGAACTTTGGGCATTTACTGTATCT 59.646 40.000 0.00 0.00 0.00 1.98
864 2323 1.377725 ACTGGCAGCGCTAATTGCT 60.378 52.632 15.89 0.00 45.31 3.91
866 2325 0.179181 CACACTGGCAGCGCTAATTG 60.179 55.000 15.89 6.16 0.00 2.32
873 2332 0.671472 TTGAGATCACACTGGCAGCG 60.671 55.000 15.89 7.90 0.00 5.18
958 2432 6.545504 CCAATCAGGTAATATCAAGGTTCG 57.454 41.667 0.00 0.00 0.00 3.95
1129 2613 1.021202 CAAAGACCAGAACCAACGCA 58.979 50.000 0.00 0.00 0.00 5.24
1160 2644 3.057315 GGCACACAGTGATGTTAATGCTT 60.057 43.478 7.81 0.00 35.23 3.91
1409 2894 2.031120 CAACTGAGAAAAGCCCAACCA 58.969 47.619 0.00 0.00 0.00 3.67
1569 3054 4.519350 CCTGAACCAAACTTTAGGAAGTCC 59.481 45.833 0.00 0.00 45.18 3.85
1664 3152 1.476007 GGCCTGCCCTCGATCATAGT 61.476 60.000 0.00 0.00 0.00 2.12
1665 3153 1.190833 AGGCCTGCCCTCGATCATAG 61.191 60.000 3.11 0.00 41.21 2.23
1666 3154 1.152247 AGGCCTGCCCTCGATCATA 60.152 57.895 3.11 0.00 41.21 2.15
1667 3155 2.447379 AGGCCTGCCCTCGATCAT 60.447 61.111 3.11 0.00 41.21 2.45
1668 3156 3.473647 CAGGCCTGCCCTCGATCA 61.474 66.667 22.33 0.00 44.09 2.92
1669 3157 4.247380 CCAGGCCTGCCCTCGATC 62.247 72.222 28.39 0.00 44.09 3.69
1682 3170 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
1683 3171 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
1684 3172 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
1685 3173 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
1686 3174 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
1687 3175 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
1688 3176 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
1694 3182 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
1695 3183 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
1696 3184 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
1697 3185 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
1698 3186 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
1699 3187 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
1700 3188 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
1711 3199 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
1712 3200 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
1713 3201 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
1714 3202 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
1715 3203 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
1716 3204 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
1717 3205 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
1718 3206 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
1719 3207 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
1720 3208 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
1729 3217 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
1730 3218 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
1731 3219 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
1732 3220 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
1733 3221 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
1734 3222 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
1735 3223 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
1736 3224 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
1738 3226 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
1739 3227 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
1740 3228 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
1741 3229 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
1752 3240 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
1753 3241 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
1754 3242 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
1755 3243 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
1756 3244 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
1757 3245 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
1758 3246 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
1759 3247 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
1760 3248 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
1761 3249 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
1762 3250 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
1763 3251 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
1764 3252 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
1765 3253 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
1766 3254 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
1767 3255 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
1768 3256 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
1769 3257 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
1770 3258 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
1771 3259 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
1772 3260 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
1773 3261 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
1774 3262 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
1775 3263 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
1776 3264 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
1777 3265 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
1778 3266 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
1779 3267 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
1780 3268 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
1781 3269 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
1782 3270 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
1783 3271 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
1784 3272 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
1785 3273 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1787 3275 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
1788 3276 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
1789 3277 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
1790 3278 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
1791 3279 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
1792 3280 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
1793 3281 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
1801 3289 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
1802 3290 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
1803 3291 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
1804 3292 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
1805 3293 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
1806 3294 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
1807 3295 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
1808 3296 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
1809 3297 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
1810 3298 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
1811 3299 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
1812 3300 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
1813 3301 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
1814 3302 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
1815 3303 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
1816 3304 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
1817 3305 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
1818 3306 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
1819 3307 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
1820 3308 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
1821 3309 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
1822 3310 0.954452 CAAAAGGACAGACCCAGTGC 59.046 55.000 0.00 0.00 40.05 4.40
1823 3311 1.949525 CACAAAAGGACAGACCCAGTG 59.050 52.381 0.00 0.00 40.05 3.66
1824 3312 1.843851 TCACAAAAGGACAGACCCAGT 59.156 47.619 0.00 0.00 40.05 4.00
1825 3313 2.158755 ACTCACAAAAGGACAGACCCAG 60.159 50.000 0.00 0.00 40.05 4.45
1826 3314 1.843851 ACTCACAAAAGGACAGACCCA 59.156 47.619 0.00 0.00 40.05 4.51
1827 3315 2.640316 ACTCACAAAAGGACAGACCC 57.360 50.000 0.00 0.00 40.05 4.46
1828 3316 4.338379 AGTACTCACAAAAGGACAGACC 57.662 45.455 0.00 0.00 32.04 3.85
1829 3317 6.688578 TCATAGTACTCACAAAAGGACAGAC 58.311 40.000 0.00 0.00 32.04 3.51
1830 3318 6.911250 TCATAGTACTCACAAAAGGACAGA 57.089 37.500 0.00 0.00 32.04 3.41
1831 3319 6.758886 GGATCATAGTACTCACAAAAGGACAG 59.241 42.308 0.00 0.00 32.04 3.51
1832 3320 6.212589 TGGATCATAGTACTCACAAAAGGACA 59.787 38.462 0.00 0.00 32.04 4.02
1833 3321 6.640518 TGGATCATAGTACTCACAAAAGGAC 58.359 40.000 0.00 0.00 0.00 3.85
1834 3322 6.867519 TGGATCATAGTACTCACAAAAGGA 57.132 37.500 0.00 0.00 0.00 3.36
1835 3323 6.422100 CGATGGATCATAGTACTCACAAAAGG 59.578 42.308 0.00 0.00 0.00 3.11
1836 3324 6.980978 ACGATGGATCATAGTACTCACAAAAG 59.019 38.462 0.00 0.00 28.56 2.27
1837 3325 6.873997 ACGATGGATCATAGTACTCACAAAA 58.126 36.000 0.00 0.00 28.56 2.44
1838 3326 6.465439 ACGATGGATCATAGTACTCACAAA 57.535 37.500 0.00 0.00 28.56 2.83
1839 3327 6.544564 TGTACGATGGATCATAGTACTCACAA 59.455 38.462 22.20 7.84 45.94 3.33
1840 3328 6.059484 TGTACGATGGATCATAGTACTCACA 58.941 40.000 22.20 9.89 45.94 3.58
1841 3329 6.555812 TGTACGATGGATCATAGTACTCAC 57.444 41.667 22.20 8.09 45.94 3.51
1846 3334 6.208599 TGAGCATTGTACGATGGATCATAGTA 59.791 38.462 22.05 0.00 32.44 1.82
2082 3570 3.557903 ATGGCGCTGCAGGTTGAGT 62.558 57.895 17.12 0.00 0.00 3.41
2353 3841 2.087646 CTCGAGTGTCTCCAGATGTGA 58.912 52.381 3.62 0.00 0.00 3.58
2457 3946 8.103305 ACTCCAACATCAGTAACTTTATGACAT 58.897 33.333 0.00 0.00 0.00 3.06
2529 4018 2.169352 CAGAGAGACCCTACCACAATGG 59.831 54.545 0.00 0.00 45.02 3.16
2705 4225 1.524621 CTGGGTCGGATGATGCACC 60.525 63.158 0.00 0.00 0.00 5.01
2752 4279 5.538433 AGGAAAATAGTTGCAGCAAAGGTAA 59.462 36.000 10.11 0.00 0.00 2.85
2799 4334 1.758936 TTCATCAGCTGCCTTCCATG 58.241 50.000 9.47 6.66 0.00 3.66
2800 4335 2.092049 TCATTCATCAGCTGCCTTCCAT 60.092 45.455 9.47 0.00 0.00 3.41
2902 4513 1.306148 GCCTACTTATGCCGGTTTCC 58.694 55.000 1.90 0.00 0.00 3.13
3044 4675 2.158900 ACCCGAACATAGAAGGCAGATG 60.159 50.000 0.00 0.00 0.00 2.90
3053 4684 2.684001 AATTGCGACCCGAACATAGA 57.316 45.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.