AutoCloner

Multiple sequence alignment - TraesCS6A01G095700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G095700	chr6A	100.000	2620	0	0	1	2620	63016979	63019598	0.000000e+00	4839.0
1	TraesCS6A01G095700	chr6A	83.254	627	65	23	1847	2462	63071858	63072455	8.250000e-150	540.0
2	TraesCS6A01G095700	chr6A	83.493	418	44	12	1	416	63069557	63069951	1.480000e-97	366.0
3	TraesCS6A01G095700	chr6A	85.246	366	18	14	772	1109	63070484	63070841	6.940000e-91	344.0
4	TraesCS6A01G095700	chr6A	86.296	270	28	3	1108	1377	63070870	63071130	4.270000e-73	285.0
5	TraesCS6A01G095700	chr6A	89.474	152	12	3	486	636	63070243	63070391	3.440000e-44	189.0
6	TraesCS6A01G095700	chr6A	88.591	149	4	3	1549	1693	63071418	63071557	4.480000e-38	169.0
7	TraesCS6A01G095700	chr6A	88.764	89	7	3	930	1017	62489194	62489108	3.570000e-19	106.0
8	TraesCS6A01G095700	chr6A	85.294	68	8	2	1416	1482	42207784	42207718	4.680000e-08	69.4
9	TraesCS6A01G095700	chr6A	85.294	68	8	2	1416	1482	42388686	42388620	4.680000e-08	69.4
10	TraesCS6A01G095700	chr6A	97.436	39	1	0	1661	1699	63018521	63018559	1.680000e-07	67.6
11	TraesCS6A01G095700	chr6A	97.436	39	1	0	1543	1581	63018639	63018677	1.680000e-07	67.6
12	TraesCS6A01G095700	chr6A	100.000	35	0	0	1665	1699	63071416	63071450	6.050000e-07	65.8
13	TraesCS6A01G095700	chr6D	92.295	1843	68	24	1	1814	52006517	52008314	0.000000e+00	2549.0
14	TraesCS6A01G095700	chr6D	93.930	659	34	2	1966	2618	52008317	52008975	0.000000e+00	990.0
15	TraesCS6A01G095700	chr6D	81.667	660	49	28	772	1376	52128172	52128814	1.410000e-132	483.0
16	TraesCS6A01G095700	chr6D	87.402	381	18	18	1663	2027	52129120	52129486	6.750000e-111	411.0
17	TraesCS6A01G095700	chr6D	83.571	420	38	13	1	416	52127245	52127637	5.330000e-97	364.0
18	TraesCS6A01G095700	chr6D	86.735	196	12	6	486	670	52127932	52128124	3.420000e-49	206.0
19	TraesCS6A01G095700	chr6D	94.068	118	6	1	2493	2609	52279213	52279330	7.450000e-41	178.0
20	TraesCS6A01G095700	chr6D	90.110	91	6	3	928	1017	53309928	53310016	5.930000e-22	115.0
21	TraesCS6A01G095700	chr6D	97.436	39	1	0	1661	1699	52008048	52008086	1.680000e-07	67.6
22	TraesCS6A01G095700	chr6D	97.436	39	1	0	1543	1581	52008163	52008201	1.680000e-07	67.6
23	TraesCS6A01G095700	chr6D	80.233	86	14	3	1399	1482	51623635	51623551	7.830000e-06	62.1
24	TraesCS6A01G095700	chr6B	88.647	1286	85	33	954	2199	118933402	118934666	0.000000e+00	1509.0
25	TraesCS6A01G095700	chr6B	89.665	716	54	12	1	714	118918369	118919066	0.000000e+00	894.0
26	TraesCS6A01G095700	chr6B	84.861	720	69	21	1786	2494	118939658	118940348	0.000000e+00	689.0
27	TraesCS6A01G095700	chr6B	81.227	554	46	22	862	1377	118938407	118938940	6.800000e-106	394.0
28	TraesCS6A01G095700	chr6B	83.333	462	36	15	272	694	118937520	118937979	3.160000e-104	388.0
29	TraesCS6A01G095700	chr6B	92.593	243	8	5	714	955	118933055	118933288	8.980000e-90	340.0
30	TraesCS6A01G095700	chr6B	88.261	230	25	2	1	228	118937280	118937509	9.240000e-70	274.0
31	TraesCS6A01G095700	chr6B	91.026	156	9	2	713	863	118938086	118938241	3.420000e-49	206.0
32	TraesCS6A01G095700	chr6B	81.166	223	23	9	1481	1694	118939141	118939353	7.500000e-36	161.0
33	TraesCS6A01G095700	chr6B	86.719	128	16	1	2492	2618	118935001	118935128	9.780000e-30	141.0
34	TraesCS6A01G095700	chr6B	81.111	180	20	7	2315	2494	118934722	118934887	5.880000e-27	132.0
35	TraesCS6A01G095700	chr6B	94.000	50	2	1	627	675	118938034	118938083	1.010000e-09	75.0
36	TraesCS6A01G095700	chr6B	97.436	39	1	0	1543	1581	118934127	118934165	1.680000e-07	67.6
37	TraesCS6A01G095700	chr6B	100.000	34	0	0	1666	1699	118939213	118939246	2.180000e-06	63.9
38	TraesCS6A01G095700	chr6B	95.000	40	1	1	1661	1699	118934010	118934049	7.830000e-06	62.1
39	TraesCS6A01G095700	chr6B	92.308	39	3	0	1444	1482	118822295	118822257	3.640000e-04	56.5
40	TraesCS6A01G095700	chrUn	82.558	86	12	3	1399	1482	105246246	105246330	3.620000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G095700	chr6A	63016979	63019598	2619	False	1658.066667	4839	98.290667	1	2620	3	chr6A.!!$F1	2619
1	TraesCS6A01G095700	chr6A	63069557	63072455	2898	False	279.828571	540	88.050571	1	2462	7	chr6A.!!$F2	2461
2	TraesCS6A01G095700	chr6D	52006517	52008975	2458	False	918.550000	2549	95.274250	1	2618	4	chr6D.!!$F3	2617
3	TraesCS6A01G095700	chr6D	52127245	52129486	2241	False	366.000000	483	84.843750	1	2027	4	chr6D.!!$F4	2026
4	TraesCS6A01G095700	chr6B	118918369	118919066	697	False	894.000000	894	89.665000	1	714	1	chr6B.!!$F1	713
5	TraesCS6A01G095700	chr6B	118933055	118940348	7293	False	321.614286	1509	88.955714	1	2618	14	chr6B.!!$F2	2617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
894	5702	0.321122	AAAGAAGCTGCAGTCTCGGG	60.321	55.0	16.64	0.0	0.0	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2411	7668	0.380378	GTGTGTGCGGTTTGTGATGT	59.62	50.0	0.0	0.0	0.0	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	4332	6.071560	GGTATTTTAAACTTCAGGGTTGGGAG	60.072	42.308	0.00	0.00	0.00	4.30
390	4622	3.666001	GCACGTATGTTACATTTGACGG	58.334	45.455	19.01	11.35	34.72	4.79
422	4680	5.469760	TGATTCATGTTTGTCACTCGTTGAT	59.530	36.000	0.00	0.00	36.32	2.57
493	4951	3.127721	CGGATCAGAGAGCGCATTATCTA	59.872	47.826	11.47	0.00	0.00	1.98
548	5011	4.767409	AGTTTGGCCTCTTCCATAGTTTTC	59.233	41.667	3.32	0.00	35.77	2.29
553	5016	5.196695	GGCCTCTTCCATAGTTTTCTGATT	58.803	41.667	0.00	0.00	0.00	2.57
555	5018	6.153510	GGCCTCTTCCATAGTTTTCTGATTTT	59.846	38.462	0.00	0.00	0.00	1.82
556	5019	7.031975	GCCTCTTCCATAGTTTTCTGATTTTG	58.968	38.462	0.00	0.00	0.00	2.44
557	5020	7.542025	CCTCTTCCATAGTTTTCTGATTTTGG	58.458	38.462	0.00	0.00	0.00	3.28
616	5079	6.254589	TCATCCGTCAAATTTGTGTTTTTCAC	59.745	34.615	17.47	5.35	46.31	3.18
723	5325	1.444383	CATGCAACAGCAGCAGCAG	60.444	57.895	3.17	0.00	46.36	4.24
783	5419	0.592637	TTGTTGATTGCTCTGCACCG	59.407	50.000	0.00	0.00	38.71	4.94
814	5450	1.361271	CGGCCATCCATTCATGTGC	59.639	57.895	2.24	0.00	0.00	4.57
886	5694	0.465460	ACGGAACCAAAGAAGCTGCA	60.465	50.000	1.02	0.00	0.00	4.41
888	5696	1.322442	GGAACCAAAGAAGCTGCAGT	58.678	50.000	16.64	0.00	0.00	4.40
889	5697	1.268079	GGAACCAAAGAAGCTGCAGTC	59.732	52.381	16.64	5.85	0.00	3.51
890	5698	2.225467	GAACCAAAGAAGCTGCAGTCT	58.775	47.619	16.64	8.39	0.00	3.24
891	5699	1.889545	ACCAAAGAAGCTGCAGTCTC	58.110	50.000	16.64	12.02	0.00	3.36
892	5700	0.795085	CCAAAGAAGCTGCAGTCTCG	59.205	55.000	16.64	6.22	0.00	4.04
893	5701	0.795085	CAAAGAAGCTGCAGTCTCGG	59.205	55.000	16.64	3.52	0.00	4.63
894	5702	0.321122	AAAGAAGCTGCAGTCTCGGG	60.321	55.000	16.64	0.00	0.00	5.14
895	5703	2.794820	AAGAAGCTGCAGTCTCGGGC	62.795	60.000	16.64	0.00	0.00	6.13
1020	5828	1.670811	CTATTTAACTGCCAGCACCCG	59.329	52.381	0.00	0.00	0.00	5.28
1022	5830	0.887387	TTTAACTGCCAGCACCCGAC	60.887	55.000	0.00	0.00	0.00	4.79
1030	5853	1.742880	CAGCACCCGACACATCCTG	60.743	63.158	0.00	0.00	0.00	3.86
1089	5920	3.882326	CCCATGGCCGCAGATCCT	61.882	66.667	6.09	0.00	0.00	3.24
1182	6043	2.110213	AAGAGCACCGACGGCAAA	59.890	55.556	15.39	0.00	0.00	3.68
1242	6103	4.452733	GCTAACCAGCGGAGGCGT	62.453	66.667	1.50	0.00	46.35	5.68
1260	6121	3.629858	TCGCAGACATCTCATCGTG	57.370	52.632	0.00	0.00	0.00	4.35
1302	6163	2.104331	GACGATGGTGACGGCGAT	59.896	61.111	16.62	0.00	34.22	4.58
1478	6382	1.663135	GAGCTGAAGAAGATGCGGTTC	59.337	52.381	0.00	0.00	0.00	3.62
1581	6579	8.753497	AAACAGAAGGAGAAACAAATAAGAGT	57.247	30.769	0.00	0.00	0.00	3.24
1618	6616	8.748380	AGAGTGTGTTTCAGAAAAAGAAAAAG	57.252	30.769	0.00	0.00	36.80	2.27
1619	6617	8.576442	AGAGTGTGTTTCAGAAAAAGAAAAAGA	58.424	29.630	0.00	0.00	36.80	2.52
1620	6618	9.191995	GAGTGTGTTTCAGAAAAAGAAAAAGAA	57.808	29.630	0.00	0.00	36.80	2.52
1703	6712	9.224267	CAGAAGGAGAAACAAATAAGAGAATCA	57.776	33.333	0.00	0.00	37.82	2.57
1830	7074	2.609459	CTCCATACTTTGCGACATGGAC	59.391	50.000	0.00	0.00	41.52	4.02
1880	7124	0.398318	CGAATCCATCCTTCTCCCCC	59.602	60.000	0.00	0.00	0.00	5.40
1883	7127	3.260205	GAATCCATCCTTCTCCCCCATA	58.740	50.000	0.00	0.00	0.00	2.74
1885	7129	3.383780	TCCATCCTTCTCCCCCATATT	57.616	47.619	0.00	0.00	0.00	1.28
1886	7130	3.691657	TCCATCCTTCTCCCCCATATTT	58.308	45.455	0.00	0.00	0.00	1.40
1887	7131	3.657727	TCCATCCTTCTCCCCCATATTTC	59.342	47.826	0.00	0.00	0.00	2.17
1888	7132	3.659686	CCATCCTTCTCCCCCATATTTCT	59.340	47.826	0.00	0.00	0.00	2.52
1889	7133	4.852118	CCATCCTTCTCCCCCATATTTCTA	59.148	45.833	0.00	0.00	0.00	2.10
1891	7135	4.240323	TCCTTCTCCCCCATATTTCTACC	58.760	47.826	0.00	0.00	0.00	3.18
1892	7136	3.330998	CCTTCTCCCCCATATTTCTACCC	59.669	52.174	0.00	0.00	0.00	3.69
1893	7137	2.616524	TCTCCCCCATATTTCTACCCG	58.383	52.381	0.00	0.00	0.00	5.28
1894	7138	2.090380	TCTCCCCCATATTTCTACCCGT	60.090	50.000	0.00	0.00	0.00	5.28
1895	7139	2.038557	CTCCCCCATATTTCTACCCGTG	59.961	54.545	0.00	0.00	0.00	4.94
1938	7183	4.017958	TCCCCATTGCTTGACCATACTAAA	60.018	41.667	0.00	0.00	0.00	1.85
1939	7184	4.339247	CCCCATTGCTTGACCATACTAAAG	59.661	45.833	0.00	0.00	0.00	1.85
1940	7185	5.192927	CCCATTGCTTGACCATACTAAAGA	58.807	41.667	0.00	0.00	0.00	2.52
1941	7186	5.829924	CCCATTGCTTGACCATACTAAAGAT	59.170	40.000	0.00	0.00	0.00	2.40
1942	7187	6.238842	CCCATTGCTTGACCATACTAAAGATG	60.239	42.308	0.00	0.00	0.00	2.90
1943	7188	6.543465	CCATTGCTTGACCATACTAAAGATGA	59.457	38.462	0.00	0.00	0.00	2.92
1945	7190	6.544928	TGCTTGACCATACTAAAGATGAGA	57.455	37.500	0.00	0.00	0.00	3.27
2027	7272	2.916111	CCGTTGCTGAATTGTGTGTAC	58.084	47.619	0.00	0.00	0.00	2.90
2029	7274	2.033236	CGTTGCTGAATTGTGTGTACGT	60.033	45.455	0.00	0.00	0.00	3.57
2030	7275	3.545228	CGTTGCTGAATTGTGTGTACGTT	60.545	43.478	0.00	0.00	0.00	3.99
2031	7276	4.347813	GTTGCTGAATTGTGTGTACGTTT	58.652	39.130	0.00	0.00	0.00	3.60
2032	7277	3.946402	TGCTGAATTGTGTGTACGTTTG	58.054	40.909	0.00	0.00	0.00	2.93
2033	7278	3.623510	TGCTGAATTGTGTGTACGTTTGA	59.376	39.130	0.00	0.00	0.00	2.69
2043	7294	1.269206	TGTACGTTTGAGTCGTGGTCC	60.269	52.381	0.00	0.00	41.62	4.46
2114	7365	3.694566	GGATAACGTTTGGATTGAAGCCT	59.305	43.478	5.91	0.00	0.00	4.58
2123	7374	4.687901	TGGATTGAAGCCTAATCATCGA	57.312	40.909	0.00	0.00	36.50	3.59
2218	7475	0.098552	CGCAAGAATATTGGCACGCA	59.901	50.000	0.00	0.00	43.02	5.24
2220	7477	1.135431	GCAAGAATATTGGCACGCACA	60.135	47.619	0.00	0.00	0.00	4.57
2411	7668	2.668834	CGTGATGCAATGCACAATCACA	60.669	45.455	28.60	13.89	42.57	3.58
2443	7700	1.428448	CACACACGTCACATACCTGG	58.572	55.000	0.00	0.00	0.00	4.45
2478	7735	3.002656	CGTCATGTTTGCTCTTTGTGTCT	59.997	43.478	0.00	0.00	0.00	3.41
2564	7821	3.041940	CGAAGTGCCCACGTCACC	61.042	66.667	13.27	0.00	39.29	4.02
2618	7875	7.115947	CGTATTAGTTCCATAAACGGGATTCTC	59.884	40.741	0.00	0.00	43.02	2.87
2619	7876	3.793559	AGTTCCATAAACGGGATTCTCG	58.206	45.455	3.95	3.95	43.02	4.04

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	4347	8.752766	AATTAAAGAGTTGTCTTCAATGCATG	57.247	30.769	0.00	0.00	42.59	4.06
199	4429	1.070758	AGATGTAGTGCGCCAATAGGG	59.929	52.381	4.18	0.00	40.85	3.53
316	4548	5.574830	CCGACATCTTACTCAGACTTTCTTG	59.425	44.000	0.00	0.00	32.83	3.02
326	4558	4.304110	GACAAACACCGACATCTTACTCA	58.696	43.478	0.00	0.00	0.00	3.41
390	4622	6.015504	GTGACAAACATGAATCACACGTATC	58.984	40.000	0.00	0.00	40.95	2.24
398	4630	4.813697	TCAACGAGTGACAAACATGAATCA	59.186	37.500	0.00	0.00	0.00	2.57
493	4951	3.030291	TCAAAGAGTTGCCACCACAATT	58.970	40.909	0.00	0.00	34.50	2.32
579	5042	3.604582	TGACGGATGAATGTAACATGCA	58.395	40.909	0.00	0.00	36.21	3.96
580	5043	4.614555	TTGACGGATGAATGTAACATGC	57.385	40.909	0.00	0.00	33.82	4.06
723	5325	0.731417	GACACATCATGACAGGCTGC	59.269	55.000	15.89	8.22	0.00	5.25
727	5329	2.751259	CCAAAGGACACATCATGACAGG	59.249	50.000	0.00	0.00	0.00	4.00
769	5405	1.364626	CTGGACGGTGCAGAGCAATC	61.365	60.000	23.33	0.00	41.47	2.67
783	5419	4.083862	GGCCGTGGAGGTCTGGAC	62.084	72.222	0.00	0.00	42.70	4.02
814	5450	6.930722	ACTGAGCTGGAATTAATTTGGTTTTG	59.069	34.615	1.43	0.00	0.00	2.44
894	5702	1.301322	GCTAAGGATGGCCGAGAGC	60.301	63.158	0.00	0.00	39.96	4.09
895	5703	0.316841	GAGCTAAGGATGGCCGAGAG	59.683	60.000	0.00	0.00	39.96	3.20
1020	5828	1.078143	GGGTGCCTCAGGATGTGTC	60.078	63.158	0.00	0.00	37.40	3.67
1022	5830	1.377725	GTGGGTGCCTCAGGATGTG	60.378	63.158	0.00	0.00	37.40	3.21
1030	5853	2.281484	TTTGCGAGTGGGTGCCTC	60.281	61.111	0.00	0.00	0.00	4.70
1182	6043	1.610886	GCGTTGGCTACTTCCTTTCCT	60.611	52.381	0.00	0.00	35.83	3.36
1242	6103	0.101219	CCACGATGAGATGTCTGCGA	59.899	55.000	10.80	0.00	0.00	5.10
1302	6163	1.677552	GGGAAGAGGGCTGTCGAAA	59.322	57.895	0.00	0.00	0.00	3.46
1434	6338	3.068691	CTCCCTCAGGTTCGCGGA	61.069	66.667	6.13	0.00	0.00	5.54
1478	6382	2.493973	GCTGAGCTCCAGTCCTCG	59.506	66.667	12.15	0.00	44.71	4.63
1581	6579	6.274579	TGAAACACACTCTACGTTACATGAA	58.725	36.000	0.00	0.00	0.00	2.57
1620	6618	3.560896	GTGCACAATGAAGGCATGTTTTT	59.439	39.130	13.17	0.00	40.05	1.94
1830	7074	0.458669	GCAAGGGTGCCATGATTCTG	59.541	55.000	0.00	0.00	45.68	3.02
1862	7106	1.522900	TGGGGGAGAAGGATGGATTC	58.477	55.000	0.00	0.00	0.00	2.52
1880	7124	3.093717	ACGAGCACGGGTAGAAATATG	57.906	47.619	8.74	0.00	44.46	1.78
1883	7127	1.722011	CAACGAGCACGGGTAGAAAT	58.278	50.000	8.74	0.00	44.46	2.17
1885	7129	1.373748	GCAACGAGCACGGGTAGAA	60.374	57.895	8.74	0.00	44.79	2.10
1886	7130	2.260434	GCAACGAGCACGGGTAGA	59.740	61.111	8.74	0.00	44.79	2.59
1895	7139	3.120041	GAGAGGAGATTAAGCAACGAGC	58.880	50.000	0.00	0.00	46.19	5.03
1938	7183	4.038883	TGAGATGCATCAATCGTCTCATCT	59.961	41.667	27.81	3.23	46.08	2.90
1939	7184	4.304939	TGAGATGCATCAATCGTCTCATC	58.695	43.478	27.81	12.92	46.08	2.92
1940	7185	4.332428	TGAGATGCATCAATCGTCTCAT	57.668	40.909	27.81	3.39	46.08	2.90
1941	7186	4.700700	ATTGAGATGCATCAATCGTCTCA	58.299	39.130	27.81	18.15	44.68	3.27
1942	7187	5.925397	AGTATTGAGATGCATCAATCGTCTC	59.075	40.000	27.81	15.79	44.68	3.36
1943	7188	5.851720	AGTATTGAGATGCATCAATCGTCT	58.148	37.500	27.81	15.90	44.68	4.18
1991	7236	2.520968	GGCCAACCCACCTTGTCT	59.479	61.111	0.00	0.00	0.00	3.41
2094	7345	6.601613	TGATTAGGCTTCAATCCAAACGTTAT	59.398	34.615	0.00	0.00	32.46	1.89
2114	7365	3.342377	TTGGTGTGGCTTCGATGATTA	57.658	42.857	1.89	0.00	0.00	1.75
2145	7399	5.526111	GCGTGGGTGTATAATAGAACACATT	59.474	40.000	7.78	0.00	46.22	2.71
2154	7408	1.068895	CCCGTGCGTGGGTGTATAATA	59.931	52.381	4.91	0.00	44.76	0.98
2202	7459	2.099592	CCATGTGCGTGCCAATATTCTT	59.900	45.455	0.00	0.00	0.00	2.52
2218	7475	3.055719	CGCCTCGCCAAACCATGT	61.056	61.111	0.00	0.00	0.00	3.21
2220	7477	4.028490	TCCGCCTCGCCAAACCAT	62.028	61.111	0.00	0.00	0.00	3.55
2310	7567	4.569943	TCTCAAAGGAAAAGGATGACGAG	58.430	43.478	0.00	0.00	0.00	4.18
2411	7668	0.380378	GTGTGTGCGGTTTGTGATGT	59.620	50.000	0.00	0.00	0.00	3.06
2506	7763	8.221944	AGTGATGTAGGTAGAGCTAATAGAACT	58.778	37.037	0.00	0.00	0.00	3.01
2564	7821	3.822735	TGCCACCAAAGAGAAATCTTCTG	59.177	43.478	0.00	0.00	40.87	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.