Multiple sequence alignment - TraesCS6A01G095400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G095400 chr6A 100.000 4072 0 0 947 5018 61889487 61885416 0.000000e+00 7520.0
1 TraesCS6A01G095400 chr6A 100.000 558 0 0 1 558 61890433 61889876 0.000000e+00 1031.0
2 TraesCS6A01G095400 chr6D 91.918 3576 190 40 947 4467 53552562 53556093 0.000000e+00 4911.0
3 TraesCS6A01G095400 chr6B 94.018 2474 108 19 1665 4125 118197403 118194957 0.000000e+00 3712.0
4 TraesCS6A01G095400 chr6B 93.084 694 41 5 947 1638 118198091 118197403 0.000000e+00 1009.0
5 TraesCS6A01G095400 chr6B 88.302 530 29 14 4155 4679 118194958 118194457 5.560000e-169 604.0
6 TraesCS6A01G095400 chr6B 85.475 179 11 8 132 302 118199206 118199035 6.680000e-39 172.0
7 TraesCS6A01G095400 chr6B 84.324 185 11 13 350 528 118199025 118198853 1.120000e-36 165.0
8 TraesCS6A01G095400 chr7A 100.000 28 0 0 4788 4815 674683640 674683667 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G095400 chr6A 61885416 61890433 5017 True 4275.5 7520 100.0000 1 5018 2 chr6A.!!$R1 5017
1 TraesCS6A01G095400 chr6D 53552562 53556093 3531 False 4911.0 4911 91.9180 947 4467 1 chr6D.!!$F1 3520
2 TraesCS6A01G095400 chr6B 118194457 118199206 4749 True 1132.4 3712 89.0406 132 4679 5 chr6B.!!$R1 4547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 314 0.184451 ATCCATCCATCCAGCACCAC 59.816 55.0 0.0 0.00 0.00 4.16 F
1375 1734 0.320334 TTGCTGCCGTTCTCGAATCA 60.320 50.0 0.0 0.00 39.71 2.57 F
1882 2244 0.800631 ACACATGCACATCGCTTCTG 59.199 50.0 0.0 0.00 43.06 3.02 F
2153 2515 0.958876 CTTCTGATGCAGTGCTGGCA 60.959 55.0 17.6 10.44 46.66 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 2001 0.401356 TCAAGAATGACAGCAGCCCA 59.599 50.000 0.00 0.00 0.0 5.36 R
2813 3175 1.068127 GGCAGCCCATGATGAAACATC 59.932 52.381 0.00 4.98 0.0 3.06 R
3048 3415 1.198637 GGCAAGAACACTGTCAGATGC 59.801 52.381 6.91 6.85 0.0 3.91 R
4131 4549 0.245266 ACTCGACACACACACACACA 59.755 50.000 0.00 0.00 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.248626 TGTGTGTTTGCATGCGTTC 57.751 47.368 14.09 6.05 0.00 3.95
19 20 0.453390 TGTGTGTTTGCATGCGTTCA 59.547 45.000 14.09 8.72 0.00 3.18
20 21 0.845768 GTGTGTTTGCATGCGTTCAC 59.154 50.000 22.79 22.79 0.00 3.18
21 22 0.453390 TGTGTTTGCATGCGTTCACA 59.547 45.000 26.04 26.04 34.23 3.58
22 23 1.135286 TGTGTTTGCATGCGTTCACAA 60.135 42.857 26.95 16.59 33.81 3.33
23 24 1.518102 GTGTTTGCATGCGTTCACAAG 59.482 47.619 23.86 0.00 0.00 3.16
24 25 1.130955 GTTTGCATGCGTTCACAAGG 58.869 50.000 14.09 0.00 0.00 3.61
25 26 1.028130 TTTGCATGCGTTCACAAGGA 58.972 45.000 14.09 0.00 0.00 3.36
26 27 1.246649 TTGCATGCGTTCACAAGGAT 58.753 45.000 14.09 0.00 0.00 3.24
27 28 0.522626 TGCATGCGTTCACAAGGATG 59.477 50.000 14.09 0.00 0.00 3.51
28 29 0.804364 GCATGCGTTCACAAGGATGA 59.196 50.000 0.00 0.00 0.00 2.92
29 30 1.202110 GCATGCGTTCACAAGGATGAG 60.202 52.381 0.00 0.00 0.00 2.90
30 31 2.079158 CATGCGTTCACAAGGATGAGT 58.921 47.619 0.00 0.00 0.00 3.41
31 32 1.511850 TGCGTTCACAAGGATGAGTG 58.488 50.000 0.00 0.00 37.10 3.51
32 33 1.202639 TGCGTTCACAAGGATGAGTGT 60.203 47.619 0.00 0.00 37.07 3.55
33 34 2.036604 TGCGTTCACAAGGATGAGTGTA 59.963 45.455 0.00 0.00 37.07 2.90
34 35 3.262420 GCGTTCACAAGGATGAGTGTAT 58.738 45.455 0.00 0.00 37.07 2.29
35 36 3.062639 GCGTTCACAAGGATGAGTGTATG 59.937 47.826 0.00 0.00 37.07 2.39
36 37 4.245660 CGTTCACAAGGATGAGTGTATGT 58.754 43.478 0.00 0.00 37.07 2.29
37 38 5.407502 CGTTCACAAGGATGAGTGTATGTA 58.592 41.667 0.00 0.00 37.07 2.29
38 39 6.042777 CGTTCACAAGGATGAGTGTATGTAT 58.957 40.000 0.00 0.00 37.07 2.29
39 40 6.019559 CGTTCACAAGGATGAGTGTATGTATG 60.020 42.308 0.00 0.00 37.07 2.39
40 41 6.544928 TCACAAGGATGAGTGTATGTATGT 57.455 37.500 0.00 0.00 37.07 2.29
41 42 7.654022 TCACAAGGATGAGTGTATGTATGTA 57.346 36.000 0.00 0.00 37.07 2.29
42 43 8.250143 TCACAAGGATGAGTGTATGTATGTAT 57.750 34.615 0.00 0.00 37.07 2.29
43 44 8.143835 TCACAAGGATGAGTGTATGTATGTATG 58.856 37.037 0.00 0.00 37.07 2.39
44 45 7.928167 CACAAGGATGAGTGTATGTATGTATGT 59.072 37.037 0.00 0.00 0.00 2.29
45 46 9.143155 ACAAGGATGAGTGTATGTATGTATGTA 57.857 33.333 0.00 0.00 0.00 2.29
48 49 9.314133 AGGATGAGTGTATGTATGTATGTATGT 57.686 33.333 0.00 0.00 0.00 2.29
63 64 9.736023 ATGTATGTATGTATGTATGTATGAGCG 57.264 33.333 0.00 0.00 0.00 5.03
64 65 8.736244 TGTATGTATGTATGTATGTATGAGCGT 58.264 33.333 0.00 0.00 0.00 5.07
67 68 9.736023 ATGTATGTATGTATGTATGAGCGTATG 57.264 33.333 0.00 0.00 0.00 2.39
68 69 8.736244 TGTATGTATGTATGTATGAGCGTATGT 58.264 33.333 0.00 0.00 0.00 2.29
69 70 9.010366 GTATGTATGTATGTATGAGCGTATGTG 57.990 37.037 0.00 0.00 0.00 3.21
70 71 6.977213 TGTATGTATGTATGAGCGTATGTGT 58.023 36.000 0.00 0.00 0.00 3.72
71 72 7.081976 TGTATGTATGTATGAGCGTATGTGTC 58.918 38.462 0.00 0.00 0.00 3.67
72 73 5.767816 TGTATGTATGAGCGTATGTGTCT 57.232 39.130 0.00 0.00 0.00 3.41
73 74 5.519722 TGTATGTATGAGCGTATGTGTCTG 58.480 41.667 0.00 0.00 0.00 3.51
74 75 4.655762 ATGTATGAGCGTATGTGTCTGT 57.344 40.909 0.00 0.00 0.00 3.41
75 76 5.767816 ATGTATGAGCGTATGTGTCTGTA 57.232 39.130 0.00 0.00 0.00 2.74
76 77 4.916870 TGTATGAGCGTATGTGTCTGTAC 58.083 43.478 0.00 0.00 0.00 2.90
77 78 2.933495 TGAGCGTATGTGTCTGTACC 57.067 50.000 0.00 0.00 0.00 3.34
78 79 1.131693 TGAGCGTATGTGTCTGTACCG 59.868 52.381 0.00 0.00 0.00 4.02
79 80 1.131883 GAGCGTATGTGTCTGTACCGT 59.868 52.381 0.00 0.00 0.00 4.83
80 81 1.135489 AGCGTATGTGTCTGTACCGTG 60.135 52.381 0.00 0.00 0.00 4.94
81 82 1.401931 GCGTATGTGTCTGTACCGTGT 60.402 52.381 0.00 0.00 0.00 4.49
82 83 2.923605 GCGTATGTGTCTGTACCGTGTT 60.924 50.000 0.00 0.00 0.00 3.32
83 84 3.670359 GCGTATGTGTCTGTACCGTGTTA 60.670 47.826 0.00 0.00 0.00 2.41
84 85 4.475028 CGTATGTGTCTGTACCGTGTTAA 58.525 43.478 0.00 0.00 0.00 2.01
85 86 4.556135 CGTATGTGTCTGTACCGTGTTAAG 59.444 45.833 0.00 0.00 0.00 1.85
86 87 4.859304 ATGTGTCTGTACCGTGTTAAGA 57.141 40.909 0.00 0.00 0.00 2.10
87 88 4.652421 TGTGTCTGTACCGTGTTAAGAA 57.348 40.909 0.00 0.00 0.00 2.52
88 89 5.008619 TGTGTCTGTACCGTGTTAAGAAA 57.991 39.130 0.00 0.00 0.00 2.52
89 90 5.417811 TGTGTCTGTACCGTGTTAAGAAAA 58.582 37.500 0.00 0.00 0.00 2.29
90 91 5.873712 TGTGTCTGTACCGTGTTAAGAAAAA 59.126 36.000 0.00 0.00 0.00 1.94
91 92 6.183360 TGTGTCTGTACCGTGTTAAGAAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
92 93 5.873712 TGTCTGTACCGTGTTAAGAAAAACA 59.126 36.000 0.00 0.00 37.03 2.83
93 94 6.370994 TGTCTGTACCGTGTTAAGAAAAACAA 59.629 34.615 0.00 0.00 40.85 2.83
94 95 6.684131 GTCTGTACCGTGTTAAGAAAAACAAC 59.316 38.462 0.00 0.00 40.85 3.32
95 96 5.558307 TGTACCGTGTTAAGAAAAACAACG 58.442 37.500 0.00 0.00 40.85 4.10
96 97 4.943142 ACCGTGTTAAGAAAAACAACGA 57.057 36.364 0.00 0.00 40.85 3.85
97 98 4.900664 ACCGTGTTAAGAAAAACAACGAG 58.099 39.130 0.00 0.00 40.85 4.18
98 99 4.630940 ACCGTGTTAAGAAAAACAACGAGA 59.369 37.500 0.00 0.00 40.85 4.04
99 100 5.122082 ACCGTGTTAAGAAAAACAACGAGAA 59.878 36.000 0.00 0.00 40.85 2.87
100 101 5.450066 CCGTGTTAAGAAAAACAACGAGAAC 59.550 40.000 0.00 0.00 40.85 3.01
101 102 5.166583 CGTGTTAAGAAAAACAACGAGAACG 59.833 40.000 0.00 0.00 40.85 3.95
102 103 6.242829 GTGTTAAGAAAAACAACGAGAACGA 58.757 36.000 0.00 0.00 40.85 3.85
103 104 6.407181 GTGTTAAGAAAAACAACGAGAACGAG 59.593 38.462 0.00 0.00 40.85 4.18
104 105 6.310956 TGTTAAGAAAAACAACGAGAACGAGA 59.689 34.615 0.00 0.00 37.80 4.04
105 106 5.789710 AAGAAAAACAACGAGAACGAGAA 57.210 34.783 0.00 0.00 42.66 2.87
106 107 5.391060 AGAAAAACAACGAGAACGAGAAG 57.609 39.130 0.00 0.00 42.66 2.85
107 108 4.868734 AGAAAAACAACGAGAACGAGAAGT 59.131 37.500 0.00 0.00 42.66 3.01
108 109 6.038356 AGAAAAACAACGAGAACGAGAAGTA 58.962 36.000 0.00 0.00 42.66 2.24
109 110 6.532657 AGAAAAACAACGAGAACGAGAAGTAA 59.467 34.615 0.00 0.00 42.66 2.24
110 111 5.885020 AAACAACGAGAACGAGAAGTAAG 57.115 39.130 0.00 0.00 42.66 2.34
111 112 4.564940 ACAACGAGAACGAGAAGTAAGT 57.435 40.909 0.00 0.00 42.66 2.24
112 113 4.929781 ACAACGAGAACGAGAAGTAAGTT 58.070 39.130 0.00 0.00 42.66 2.66
113 114 5.346522 ACAACGAGAACGAGAAGTAAGTTT 58.653 37.500 0.00 0.00 42.66 2.66
114 115 5.809051 ACAACGAGAACGAGAAGTAAGTTTT 59.191 36.000 0.00 0.00 42.66 2.43
115 116 5.885020 ACGAGAACGAGAAGTAAGTTTTG 57.115 39.130 0.00 0.00 42.66 2.44
116 117 4.208666 ACGAGAACGAGAAGTAAGTTTTGC 59.791 41.667 0.00 0.00 42.66 3.68
117 118 4.208460 CGAGAACGAGAAGTAAGTTTTGCA 59.792 41.667 0.00 0.00 42.66 4.08
118 119 5.276678 CGAGAACGAGAAGTAAGTTTTGCAA 60.277 40.000 0.00 0.00 42.66 4.08
119 120 6.564125 CGAGAACGAGAAGTAAGTTTTGCAAT 60.564 38.462 0.00 0.00 42.66 3.56
120 121 7.027778 AGAACGAGAAGTAAGTTTTGCAATT 57.972 32.000 0.00 0.00 0.00 2.32
121 122 7.132863 AGAACGAGAAGTAAGTTTTGCAATTC 58.867 34.615 0.00 0.00 0.00 2.17
122 123 6.371809 ACGAGAAGTAAGTTTTGCAATTCA 57.628 33.333 0.00 0.00 0.00 2.57
123 124 6.970484 ACGAGAAGTAAGTTTTGCAATTCAT 58.030 32.000 0.00 0.00 0.00 2.57
124 125 7.078228 ACGAGAAGTAAGTTTTGCAATTCATC 58.922 34.615 0.00 0.00 0.00 2.92
125 126 7.077605 CGAGAAGTAAGTTTTGCAATTCATCA 58.922 34.615 0.00 0.00 0.00 3.07
126 127 7.059945 CGAGAAGTAAGTTTTGCAATTCATCAC 59.940 37.037 0.00 0.00 0.00 3.06
127 128 6.857964 AGAAGTAAGTTTTGCAATTCATCACG 59.142 34.615 0.00 0.00 0.00 4.35
128 129 6.312399 AGTAAGTTTTGCAATTCATCACGA 57.688 33.333 0.00 0.00 0.00 4.35
129 130 6.913170 AGTAAGTTTTGCAATTCATCACGAT 58.087 32.000 0.00 0.00 0.00 3.73
130 131 7.370383 AGTAAGTTTTGCAATTCATCACGATT 58.630 30.769 0.00 0.00 0.00 3.34
164 165 4.263287 GGGTTTAAAAGGCAATTGGTGGAT 60.263 41.667 7.72 0.00 0.00 3.41
168 169 7.201866 GGTTTAAAAGGCAATTGGTGGATTTTT 60.202 33.333 7.72 0.00 0.00 1.94
201 210 3.853831 TGCAATTAGTGGAGTGCAATG 57.146 42.857 0.00 0.00 46.16 2.82
205 214 5.047164 TGCAATTAGTGGAGTGCAATGAAAT 60.047 36.000 0.00 0.00 46.16 2.17
231 240 0.599991 ACGCGCAATCAAGACAGTGA 60.600 50.000 5.73 0.00 0.00 3.41
233 242 1.926510 CGCGCAATCAAGACAGTGATA 59.073 47.619 8.75 0.00 37.25 2.15
234 243 2.034254 CGCGCAATCAAGACAGTGATAG 60.034 50.000 8.75 0.00 37.25 2.08
235 244 2.932614 GCGCAATCAAGACAGTGATAGT 59.067 45.455 0.30 0.00 37.25 2.12
236 245 4.112634 GCGCAATCAAGACAGTGATAGTA 58.887 43.478 0.30 0.00 37.25 1.82
237 246 4.026475 GCGCAATCAAGACAGTGATAGTAC 60.026 45.833 0.30 0.00 37.25 2.73
238 247 5.344066 CGCAATCAAGACAGTGATAGTACT 58.656 41.667 0.00 0.00 37.25 2.73
239 248 6.495706 CGCAATCAAGACAGTGATAGTACTA 58.504 40.000 4.77 4.77 37.25 1.82
255 264 0.698238 ACTATTTGCACCTCAGCCCA 59.302 50.000 0.00 0.00 0.00 5.36
299 308 0.848735 ACCCACATCCATCCATCCAG 59.151 55.000 0.00 0.00 0.00 3.86
305 314 0.184451 ATCCATCCATCCAGCACCAC 59.816 55.000 0.00 0.00 0.00 4.16
308 317 1.091771 CATCCATCCAGCACCACGAC 61.092 60.000 0.00 0.00 0.00 4.34
309 318 2.578163 ATCCATCCAGCACCACGACG 62.578 60.000 0.00 0.00 0.00 5.12
310 319 2.815211 CATCCAGCACCACGACGG 60.815 66.667 0.00 0.00 42.50 4.79
311 320 4.082523 ATCCAGCACCACGACGGG 62.083 66.667 0.00 0.00 40.22 5.28
317 326 4.308458 CACCACGACGGGCCAAGA 62.308 66.667 4.39 0.00 40.22 3.02
319 328 2.742372 CCACGACGGGCCAAGAAG 60.742 66.667 4.39 0.33 0.00 2.85
328 337 3.059982 GCCAAGAAGCCAAACCCC 58.940 61.111 0.00 0.00 0.00 4.95
329 338 2.583441 GCCAAGAAGCCAAACCCCC 61.583 63.158 0.00 0.00 0.00 5.40
330 339 2.275380 CCAAGAAGCCAAACCCCCG 61.275 63.158 0.00 0.00 0.00 5.73
331 340 1.228429 CAAGAAGCCAAACCCCCGA 60.228 57.895 0.00 0.00 0.00 5.14
332 341 0.825840 CAAGAAGCCAAACCCCCGAA 60.826 55.000 0.00 0.00 0.00 4.30
333 342 0.539669 AAGAAGCCAAACCCCCGAAG 60.540 55.000 0.00 0.00 0.00 3.79
334 343 2.600470 AAGCCAAACCCCCGAAGC 60.600 61.111 0.00 0.00 0.00 3.86
335 344 3.146828 AAGCCAAACCCCCGAAGCT 62.147 57.895 0.00 0.00 0.00 3.74
336 345 3.062466 GCCAAACCCCCGAAGCTC 61.062 66.667 0.00 0.00 0.00 4.09
337 346 2.746277 CCAAACCCCCGAAGCTCG 60.746 66.667 0.00 0.00 40.07 5.03
338 347 3.431725 CAAACCCCCGAAGCTCGC 61.432 66.667 0.00 0.00 38.82 5.03
339 348 4.717313 AAACCCCCGAAGCTCGCC 62.717 66.667 0.00 0.00 38.82 5.54
347 356 4.168291 GAAGCTCGCCCCCTCCAG 62.168 72.222 0.00 0.00 0.00 3.86
348 357 4.722535 AAGCTCGCCCCCTCCAGA 62.723 66.667 0.00 0.00 0.00 3.86
351 360 3.151022 CTCGCCCCCTCCAGACTC 61.151 72.222 0.00 0.00 0.00 3.36
352 361 4.779733 TCGCCCCCTCCAGACTCC 62.780 72.222 0.00 0.00 0.00 3.85
354 363 3.403558 GCCCCCTCCAGACTCCAC 61.404 72.222 0.00 0.00 0.00 4.02
355 364 2.689034 CCCCCTCCAGACTCCACC 60.689 72.222 0.00 0.00 0.00 4.61
376 385 2.088423 CCCGAAATTCAAATCCCACGA 58.912 47.619 0.00 0.00 0.00 4.35
385 394 0.909610 AAATCCCACGAGAGCTCCCA 60.910 55.000 10.93 0.00 0.00 4.37
386 395 1.617947 AATCCCACGAGAGCTCCCAC 61.618 60.000 10.93 1.42 0.00 4.61
390 399 3.999285 ACGAGAGCTCCCACCCCT 61.999 66.667 10.93 0.00 0.00 4.79
392 401 3.151022 GAGAGCTCCCACCCCTCG 61.151 72.222 10.93 0.00 0.00 4.63
393 402 4.787280 AGAGCTCCCACCCCTCGG 62.787 72.222 10.93 0.00 0.00 4.63
394 403 4.779733 GAGCTCCCACCCCTCGGA 62.780 72.222 0.87 0.00 0.00 4.55
395 404 4.332543 AGCTCCCACCCCTCGGAA 62.333 66.667 0.00 0.00 0.00 4.30
398 407 1.918800 CTCCCACCCCTCGGAAAGT 60.919 63.158 0.00 0.00 0.00 2.66
399 408 0.616679 CTCCCACCCCTCGGAAAGTA 60.617 60.000 0.00 0.00 0.00 2.24
401 410 0.694196 CCCACCCCTCGGAAAGTAAA 59.306 55.000 0.00 0.00 0.00 2.01
403 412 2.291346 CCCACCCCTCGGAAAGTAAAAT 60.291 50.000 0.00 0.00 0.00 1.82
404 413 3.427573 CCACCCCTCGGAAAGTAAAATT 58.572 45.455 0.00 0.00 0.00 1.82
405 414 3.442625 CCACCCCTCGGAAAGTAAAATTC 59.557 47.826 0.00 0.00 0.00 2.17
407 416 4.521256 CACCCCTCGGAAAGTAAAATTCAA 59.479 41.667 0.00 0.00 0.00 2.69
408 417 5.010213 CACCCCTCGGAAAGTAAAATTCAAA 59.990 40.000 0.00 0.00 0.00 2.69
409 418 5.243060 ACCCCTCGGAAAGTAAAATTCAAAG 59.757 40.000 0.00 0.00 0.00 2.77
499 515 0.464554 ATCAAAAGCGAGGCTAGCCC 60.465 55.000 30.42 19.75 38.25 5.19
528 544 7.698506 ATATTCATCCATTCATTCATTCGCT 57.301 32.000 0.00 0.00 0.00 4.93
530 546 3.004002 TCATCCATTCATTCATTCGCTGC 59.996 43.478 0.00 0.00 0.00 5.25
531 547 2.367486 TCCATTCATTCATTCGCTGCA 58.633 42.857 0.00 0.00 0.00 4.41
532 548 2.097954 TCCATTCATTCATTCGCTGCAC 59.902 45.455 0.00 0.00 0.00 4.57
533 549 2.106418 CATTCATTCATTCGCTGCACG 58.894 47.619 0.00 2.79 45.62 5.34
1115 1474 1.587054 CTCTCCGCGTCTGGTTCTT 59.413 57.895 4.92 0.00 0.00 2.52
1359 1718 1.862806 GGTTCTGTCTCTGCGTTGC 59.137 57.895 0.00 0.00 0.00 4.17
1360 1719 0.601311 GGTTCTGTCTCTGCGTTGCT 60.601 55.000 0.00 0.00 0.00 3.91
1361 1720 0.510359 GTTCTGTCTCTGCGTTGCTG 59.490 55.000 0.00 0.00 0.00 4.41
1362 1721 1.224069 TTCTGTCTCTGCGTTGCTGC 61.224 55.000 0.00 0.00 0.00 5.25
1375 1734 0.320334 TTGCTGCCGTTCTCGAATCA 60.320 50.000 0.00 0.00 39.71 2.57
1381 1740 2.159099 TGCCGTTCTCGAATCATTAGCT 60.159 45.455 0.00 0.00 39.71 3.32
1465 1824 3.873952 GTCTCACAACAGATCTAATGGCC 59.126 47.826 0.00 0.00 0.00 5.36
1492 1851 5.294552 ACACACTTCTTTTGTTCTACTCTGC 59.705 40.000 0.00 0.00 0.00 4.26
1516 1876 2.137523 GGAACAAACAATTGGCAGCTG 58.862 47.619 10.11 10.11 41.01 4.24
1522 1882 5.609423 ACAAACAATTGGCAGCTGATTTTA 58.391 33.333 20.43 0.00 41.01 1.52
1539 1899 1.939974 TTAGCGCCTGTGAATAGCAG 58.060 50.000 2.29 0.00 0.00 4.24
1562 1922 3.181475 CCCTTCTTAGCTTAGATGCGTGA 60.181 47.826 2.77 0.00 38.13 4.35
1578 1938 0.874390 GTGAAACTTGCTGGCGATGA 59.126 50.000 0.00 0.00 0.00 2.92
1584 1944 2.809861 CTTGCTGGCGATGACACCCT 62.810 60.000 0.00 0.00 0.00 4.34
1589 1949 1.264749 TGGCGATGACACCCTTAGCT 61.265 55.000 0.00 0.00 0.00 3.32
1613 1973 8.193438 GCTCATTCCTGTTAGCAATTTAATCTT 58.807 33.333 0.00 0.00 35.05 2.40
1620 1980 7.201609 CCTGTTAGCAATTTAATCTTACTCGCA 60.202 37.037 0.00 0.00 0.00 5.10
1767 2128 4.202245 GTGGCTACACTGGAACATCTAA 57.798 45.455 0.00 0.00 44.29 2.10
1775 2136 6.169557 ACACTGGAACATCTAACACTTGTA 57.830 37.500 0.00 0.00 38.20 2.41
1777 2138 5.120830 CACTGGAACATCTAACACTTGTAGC 59.879 44.000 0.00 0.00 38.20 3.58
1866 2227 2.017049 AGCACCTTTCAGTGACAACAC 58.983 47.619 0.00 0.00 46.24 3.32
1882 2244 0.800631 ACACATGCACATCGCTTCTG 59.199 50.000 0.00 0.00 43.06 3.02
2000 2362 2.012673 GATCAAGCACAGGGATGTGTC 58.987 52.381 9.86 3.18 41.53 3.67
2138 2500 3.553095 GACCTTGGGCCGTGCTTCT 62.553 63.158 0.00 0.00 0.00 2.85
2153 2515 0.958876 CTTCTGATGCAGTGCTGGCA 60.959 55.000 17.60 10.44 46.66 4.92
2528 2890 2.048601 AGGGATGATGAGCTCAAGAGG 58.951 52.381 22.50 0.00 37.44 3.69
2792 3154 6.038356 GGATAGTTTGATGAAGTGCCATTTG 58.962 40.000 0.00 0.00 0.00 2.32
2813 3175 7.744087 TTTGATGATGGAAGGTAATAATCCG 57.256 36.000 0.00 0.00 35.96 4.18
2822 3184 7.287061 TGGAAGGTAATAATCCGATGTTTCAT 58.713 34.615 0.00 0.00 35.96 2.57
2900 3262 2.481952 GCAACTCTCATCAACAGTCACC 59.518 50.000 0.00 0.00 0.00 4.02
2928 3290 5.759963 CTTCGGATAGGACATGTAGTACAC 58.240 45.833 4.80 0.00 31.45 2.90
2930 3292 4.820173 TCGGATAGGACATGTAGTACACTG 59.180 45.833 4.80 7.96 31.45 3.66
2998 3360 3.610242 GGTATGCTCGATTGCTTAGATCG 59.390 47.826 0.00 0.40 45.72 3.69
3009 3371 6.290799 CGATTGCTTAGATCGCTAATCATACG 60.291 42.308 0.00 0.00 39.75 3.06
3030 3392 2.370281 TCTGCAAGCACTACACTAGC 57.630 50.000 0.00 0.00 0.00 3.42
3060 3427 4.375272 AGAAATATCCGCATCTGACAGTG 58.625 43.478 1.59 1.79 0.00 3.66
3161 3528 5.642063 GCTTGCTGGTATGTTTTCTGTAGTA 59.358 40.000 0.00 0.00 0.00 1.82
3198 3565 6.096282 ACAGTTTAAAGTTGTAACCTGTGCAT 59.904 34.615 0.00 0.00 0.00 3.96
3328 3699 5.895928 TCATCTAGTCAAGAGAATGAACCG 58.104 41.667 0.00 0.00 37.74 4.44
3360 3731 1.210204 TCTTCTGAAGCTGGGCCCAT 61.210 55.000 28.82 11.53 0.00 4.00
3361 3732 1.000521 TTCTGAAGCTGGGCCCATG 60.001 57.895 28.82 20.44 0.00 3.66
3478 3863 6.040278 TGAGTATTTTGATGAAAGTTGTGGCA 59.960 34.615 0.00 0.00 0.00 4.92
3495 3889 8.584157 AGTTGTGGCATTGAATCACTTTTATTA 58.416 29.630 0.00 0.00 33.04 0.98
3647 4050 3.666111 CGCATGTCGCATTATGATCTTGG 60.666 47.826 0.00 0.00 42.60 3.61
3655 4058 4.692625 CGCATTATGATCTTGGGACTTAGG 59.307 45.833 0.00 0.00 0.00 2.69
3826 4237 4.209307 TGGTTAGTTCATCACCGCATAA 57.791 40.909 0.00 0.00 32.71 1.90
3827 4238 4.776349 TGGTTAGTTCATCACCGCATAAT 58.224 39.130 0.00 0.00 32.71 1.28
3828 4239 4.814234 TGGTTAGTTCATCACCGCATAATC 59.186 41.667 0.00 0.00 32.71 1.75
3829 4240 4.213482 GGTTAGTTCATCACCGCATAATCC 59.787 45.833 0.00 0.00 0.00 3.01
4033 4444 3.599730 TCTGATCTTCTCGCACATGTT 57.400 42.857 0.00 0.00 0.00 2.71
4043 4461 4.565022 TCTCGCACATGTTGATCTTGTTA 58.435 39.130 0.00 0.00 33.13 2.41
4141 4559 1.485124 TGTCTCCTCTGTGTGTGTGT 58.515 50.000 0.00 0.00 0.00 3.72
4145 4563 0.901827 TCCTCTGTGTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
4146 4564 1.134818 TCCTCTGTGTGTGTGTGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
4163 4581 3.619483 TGTGTCGAGTAAAGTTGTGGTTG 59.381 43.478 0.00 0.00 0.00 3.77
4184 4602 1.194772 GTGCTGCTCCTTTGTAACGTC 59.805 52.381 0.00 0.00 0.00 4.34
4222 4640 2.158608 TGGTGTCTGAGTGAGAGTGAGA 60.159 50.000 0.00 0.00 0.00 3.27
4223 4641 2.487762 GGTGTCTGAGTGAGAGTGAGAG 59.512 54.545 0.00 0.00 0.00 3.20
4224 4642 3.146066 GTGTCTGAGTGAGAGTGAGAGT 58.854 50.000 0.00 0.00 0.00 3.24
4225 4643 3.058293 GTGTCTGAGTGAGAGTGAGAGTG 60.058 52.174 0.00 0.00 0.00 3.51
4226 4644 3.181450 TGTCTGAGTGAGAGTGAGAGTGA 60.181 47.826 0.00 0.00 0.00 3.41
4227 4645 3.436704 GTCTGAGTGAGAGTGAGAGTGAG 59.563 52.174 0.00 0.00 0.00 3.51
4256 4674 4.095782 GTCTGTCTGTTGCCAACTTACAAA 59.904 41.667 9.30 0.00 0.00 2.83
4259 4677 5.587289 TGTCTGTTGCCAACTTACAAATTC 58.413 37.500 9.30 0.00 0.00 2.17
4360 4779 4.584327 AATGTTGTTTGGTAACTCTGGC 57.416 40.909 0.00 0.00 35.24 4.85
4361 4780 3.290948 TGTTGTTTGGTAACTCTGGCT 57.709 42.857 0.00 0.00 35.24 4.75
4364 4783 3.290948 TGTTTGGTAACTCTGGCTGTT 57.709 42.857 0.00 0.00 35.24 3.16
4498 4920 2.224281 TGTCTGAAGTAGTTGCTGGTGG 60.224 50.000 0.00 0.00 0.00 4.61
4505 4927 1.621814 GTAGTTGCTGGTGGGTAGTCA 59.378 52.381 0.00 0.00 0.00 3.41
4551 4973 6.875948 TCAGAAGTCAGATATAGCTCAGAC 57.124 41.667 0.00 1.27 33.28 3.51
4552 4974 6.600388 TCAGAAGTCAGATATAGCTCAGACT 58.400 40.000 5.42 5.42 41.95 3.24
4561 4983 2.115343 TAGCTCAGACTCTGCTTCGA 57.885 50.000 0.62 0.00 38.15 3.71
4572 4994 3.743396 ACTCTGCTTCGAAACAGAATGAC 59.257 43.478 26.42 0.70 42.12 3.06
4573 4995 3.727726 TCTGCTTCGAAACAGAATGACA 58.272 40.909 24.97 5.22 39.89 3.58
4574 4996 4.126437 TCTGCTTCGAAACAGAATGACAA 58.874 39.130 24.97 4.55 39.89 3.18
4575 4997 4.574421 TCTGCTTCGAAACAGAATGACAAA 59.426 37.500 24.97 3.87 39.89 2.83
4576 4998 5.239306 TCTGCTTCGAAACAGAATGACAAAT 59.761 36.000 24.97 0.00 39.89 2.32
4577 4999 5.830912 TGCTTCGAAACAGAATGACAAATT 58.169 33.333 0.00 0.00 39.69 1.82
4579 5001 6.417635 TGCTTCGAAACAGAATGACAAATTTC 59.582 34.615 0.00 0.00 39.69 2.17
4580 5002 6.638468 GCTTCGAAACAGAATGACAAATTTCT 59.362 34.615 0.00 0.00 39.69 2.52
4581 5003 7.149063 GCTTCGAAACAGAATGACAAATTTCTC 60.149 37.037 0.00 0.00 39.69 2.87
4582 5004 7.496529 TCGAAACAGAATGACAAATTTCTCT 57.503 32.000 0.00 0.00 39.69 3.10
4583 5005 7.930217 TCGAAACAGAATGACAAATTTCTCTT 58.070 30.769 0.00 0.00 39.69 2.85
4589 5011 9.736023 ACAGAATGACAAATTTCTCTTGTTTAC 57.264 29.630 0.00 0.00 39.69 2.01
4596 5018 5.358298 AATTTCTCTTGTTTACCTGTCGC 57.642 39.130 0.00 0.00 0.00 5.19
4608 5030 1.065709 ACCTGTCGCCGATTATTTGGT 60.066 47.619 0.00 0.00 0.00 3.67
4611 5033 1.661617 TGTCGCCGATTATTTGGTTCG 59.338 47.619 0.00 0.00 0.00 3.95
4613 5035 2.349275 GTCGCCGATTATTTGGTTCGAA 59.651 45.455 0.00 0.00 34.92 3.71
4614 5036 2.349275 TCGCCGATTATTTGGTTCGAAC 59.651 45.455 20.14 20.14 34.92 3.95
4616 5038 2.538132 GCCGATTATTTGGTTCGAACGG 60.538 50.000 21.34 16.34 40.60 4.44
4617 5039 2.538132 CCGATTATTTGGTTCGAACGGC 60.538 50.000 21.34 9.69 34.92 5.68
4618 5040 2.350498 CGATTATTTGGTTCGAACGGCT 59.650 45.455 21.34 8.98 34.92 5.52
4619 5041 3.543460 CGATTATTTGGTTCGAACGGCTC 60.543 47.826 21.34 8.62 34.92 4.70
4620 5042 2.754946 TATTTGGTTCGAACGGCTCT 57.245 45.000 21.34 8.00 0.00 4.09
4621 5043 2.754946 ATTTGGTTCGAACGGCTCTA 57.245 45.000 21.34 2.52 0.00 2.43
4622 5044 1.787012 TTTGGTTCGAACGGCTCTAC 58.213 50.000 21.34 6.84 0.00 2.59
4623 5045 0.963962 TTGGTTCGAACGGCTCTACT 59.036 50.000 21.34 0.00 0.00 2.57
4624 5046 0.963962 TGGTTCGAACGGCTCTACTT 59.036 50.000 21.34 0.00 0.00 2.24
4625 5047 1.336517 TGGTTCGAACGGCTCTACTTG 60.337 52.381 21.34 0.00 0.00 3.16
4626 5048 1.068055 GGTTCGAACGGCTCTACTTGA 60.068 52.381 21.34 0.00 0.00 3.02
4627 5049 2.251893 GTTCGAACGGCTCTACTTGAG 58.748 52.381 13.36 0.00 45.33 3.02
4650 5072 3.627577 CACATGTACATTAGGGCAACTCC 59.372 47.826 5.37 0.00 0.00 3.85
4654 5076 2.969821 ACATTAGGGCAACTCCAACA 57.030 45.000 0.00 0.00 36.21 3.33
4679 5101 3.630101 GGACGCATTTTGTCCGTTTTTA 58.370 40.909 0.00 0.00 45.82 1.52
4680 5102 4.231439 GGACGCATTTTGTCCGTTTTTAT 58.769 39.130 0.00 0.00 45.82 1.40
4681 5103 4.322539 GGACGCATTTTGTCCGTTTTTATC 59.677 41.667 0.00 0.00 45.82 1.75
4682 5104 4.231439 ACGCATTTTGTCCGTTTTTATCC 58.769 39.130 0.00 0.00 0.00 2.59
4683 5105 3.299542 CGCATTTTGTCCGTTTTTATCCG 59.700 43.478 0.00 0.00 0.00 4.18
4684 5106 4.231439 GCATTTTGTCCGTTTTTATCCGT 58.769 39.130 0.00 0.00 0.00 4.69
4685 5107 4.089351 GCATTTTGTCCGTTTTTATCCGTG 59.911 41.667 0.00 0.00 0.00 4.94
4686 5108 4.897025 TTTTGTCCGTTTTTATCCGTGT 57.103 36.364 0.00 0.00 0.00 4.49
4687 5109 3.881780 TTGTCCGTTTTTATCCGTGTG 57.118 42.857 0.00 0.00 0.00 3.82
4688 5110 2.144730 TGTCCGTTTTTATCCGTGTGG 58.855 47.619 0.00 0.00 0.00 4.17
4709 5131 2.163818 TCCACGTGGACAGAAATGAC 57.836 50.000 33.23 0.00 39.78 3.06
4710 5132 0.790207 CCACGTGGACAGAAATGACG 59.210 55.000 31.31 0.00 37.39 4.35
4711 5133 0.790207 CACGTGGACAGAAATGACGG 59.210 55.000 7.95 0.00 34.36 4.79
4712 5134 0.949105 ACGTGGACAGAAATGACGGC 60.949 55.000 0.00 0.00 34.36 5.68
4713 5135 1.635663 CGTGGACAGAAATGACGGCC 61.636 60.000 0.00 0.00 0.00 6.13
4714 5136 1.002624 TGGACAGAAATGACGGCCC 60.003 57.895 0.00 0.00 0.00 5.80
4715 5137 1.002624 GGACAGAAATGACGGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
4716 5138 0.608035 GGACAGAAATGACGGCCCAA 60.608 55.000 0.00 0.00 0.00 4.12
4717 5139 1.463674 GACAGAAATGACGGCCCAAT 58.536 50.000 0.00 0.00 0.00 3.16
4718 5140 1.133025 GACAGAAATGACGGCCCAATG 59.867 52.381 0.00 0.00 0.00 2.82
4719 5141 0.179129 CAGAAATGACGGCCCAATGC 60.179 55.000 0.00 0.00 40.16 3.56
4720 5142 1.226660 GAAATGACGGCCCAATGCG 60.227 57.895 0.00 0.00 42.61 4.73
4721 5143 3.355203 AAATGACGGCCCAATGCGC 62.355 57.895 0.00 0.00 42.61 6.09
4736 5158 3.722295 CGCGGACGCCAACACATT 61.722 61.111 11.42 0.00 37.98 2.71
4737 5159 2.642700 GCGGACGCCAACACATTT 59.357 55.556 5.20 0.00 34.56 2.32
4738 5160 1.442017 GCGGACGCCAACACATTTC 60.442 57.895 5.20 0.00 34.56 2.17
4739 5161 1.945522 CGGACGCCAACACATTTCA 59.054 52.632 0.00 0.00 0.00 2.69
4740 5162 0.521291 CGGACGCCAACACATTTCAT 59.479 50.000 0.00 0.00 0.00 2.57
4741 5163 1.728825 CGGACGCCAACACATTTCATG 60.729 52.381 0.00 0.00 0.00 3.07
4742 5164 1.269448 GGACGCCAACACATTTCATGT 59.731 47.619 0.00 0.00 46.22 3.21
4743 5165 2.584791 GACGCCAACACATTTCATGTC 58.415 47.619 0.00 0.00 42.70 3.06
4744 5166 1.269448 ACGCCAACACATTTCATGTCC 59.731 47.619 0.00 0.00 42.70 4.02
4745 5167 1.728825 CGCCAACACATTTCATGTCCG 60.729 52.381 0.00 0.00 42.70 4.79
4746 5168 1.269448 GCCAACACATTTCATGTCCGT 59.731 47.619 0.00 0.00 42.70 4.69
4747 5169 2.668279 GCCAACACATTTCATGTCCGTC 60.668 50.000 0.00 0.00 42.70 4.79
4748 5170 2.813754 CCAACACATTTCATGTCCGTCT 59.186 45.455 0.00 0.00 42.70 4.18
4749 5171 3.365264 CCAACACATTTCATGTCCGTCTG 60.365 47.826 0.00 0.00 42.70 3.51
4750 5172 3.126001 ACACATTTCATGTCCGTCTGT 57.874 42.857 0.00 0.00 42.70 3.41
4751 5173 3.067106 ACACATTTCATGTCCGTCTGTC 58.933 45.455 0.00 0.00 42.70 3.51
4752 5174 3.244215 ACACATTTCATGTCCGTCTGTCT 60.244 43.478 0.00 0.00 42.70 3.41
4753 5175 3.369147 CACATTTCATGTCCGTCTGTCTC 59.631 47.826 0.00 0.00 42.70 3.36
4754 5176 2.743636 TTTCATGTCCGTCTGTCTCC 57.256 50.000 0.00 0.00 0.00 3.71
4755 5177 1.924731 TTCATGTCCGTCTGTCTCCT 58.075 50.000 0.00 0.00 0.00 3.69
4756 5178 2.801077 TCATGTCCGTCTGTCTCCTA 57.199 50.000 0.00 0.00 0.00 2.94
4757 5179 3.298686 TCATGTCCGTCTGTCTCCTAT 57.701 47.619 0.00 0.00 0.00 2.57
4758 5180 3.215151 TCATGTCCGTCTGTCTCCTATC 58.785 50.000 0.00 0.00 0.00 2.08
4759 5181 3.117851 TCATGTCCGTCTGTCTCCTATCT 60.118 47.826 0.00 0.00 0.00 1.98
4760 5182 2.644676 TGTCCGTCTGTCTCCTATCTG 58.355 52.381 0.00 0.00 0.00 2.90
4761 5183 2.026169 TGTCCGTCTGTCTCCTATCTGT 60.026 50.000 0.00 0.00 0.00 3.41
4762 5184 2.356382 GTCCGTCTGTCTCCTATCTGTG 59.644 54.545 0.00 0.00 0.00 3.66
4763 5185 2.026169 TCCGTCTGTCTCCTATCTGTGT 60.026 50.000 0.00 0.00 0.00 3.72
4764 5186 2.098280 CCGTCTGTCTCCTATCTGTGTG 59.902 54.545 0.00 0.00 0.00 3.82
4765 5187 2.098280 CGTCTGTCTCCTATCTGTGTGG 59.902 54.545 0.00 0.00 0.00 4.17
4766 5188 3.357203 GTCTGTCTCCTATCTGTGTGGA 58.643 50.000 0.00 0.00 0.00 4.02
4767 5189 3.129638 GTCTGTCTCCTATCTGTGTGGAC 59.870 52.174 0.00 0.00 0.00 4.02
4768 5190 2.092323 TGTCTCCTATCTGTGTGGACG 58.908 52.381 0.00 0.00 0.00 4.79
4769 5191 1.103803 TCTCCTATCTGTGTGGACGC 58.896 55.000 0.00 0.00 0.00 5.19
4770 5192 0.817654 CTCCTATCTGTGTGGACGCA 59.182 55.000 0.00 0.00 34.84 5.24
4771 5193 1.204704 CTCCTATCTGTGTGGACGCAA 59.795 52.381 0.00 0.00 35.77 4.85
4772 5194 1.621317 TCCTATCTGTGTGGACGCAAA 59.379 47.619 0.00 0.00 35.77 3.68
4773 5195 1.732259 CCTATCTGTGTGGACGCAAAC 59.268 52.381 0.00 0.00 35.77 2.93
4774 5196 1.732259 CTATCTGTGTGGACGCAAACC 59.268 52.381 0.00 0.00 35.77 3.27
4775 5197 0.889186 ATCTGTGTGGACGCAAACCC 60.889 55.000 0.00 0.00 35.77 4.11
4776 5198 1.525995 CTGTGTGGACGCAAACCCT 60.526 57.895 0.00 0.00 35.77 4.34
4777 5199 1.785041 CTGTGTGGACGCAAACCCTG 61.785 60.000 0.00 0.00 35.77 4.45
4787 5209 2.849294 GCAAACCCTGCCCAAATTAA 57.151 45.000 0.00 0.00 46.13 1.40
4788 5210 2.422597 GCAAACCCTGCCCAAATTAAC 58.577 47.619 0.00 0.00 46.13 2.01
4789 5211 2.682836 CAAACCCTGCCCAAATTAACG 58.317 47.619 0.00 0.00 0.00 3.18
4790 5212 0.606096 AACCCTGCCCAAATTAACGC 59.394 50.000 0.00 0.00 0.00 4.84
4791 5213 1.138671 CCCTGCCCAAATTAACGCG 59.861 57.895 3.53 3.53 0.00 6.01
4792 5214 1.516169 CCTGCCCAAATTAACGCGC 60.516 57.895 5.73 0.00 0.00 6.86
4793 5215 1.506262 CTGCCCAAATTAACGCGCT 59.494 52.632 5.73 0.00 0.00 5.92
4794 5216 0.798009 CTGCCCAAATTAACGCGCTG 60.798 55.000 5.73 1.02 0.00 5.18
4795 5217 2.158330 GCCCAAATTAACGCGCTGC 61.158 57.895 5.73 0.00 0.00 5.25
4808 5230 4.057428 GCTGCGTGTCCTCTCGGT 62.057 66.667 0.00 0.00 0.00 4.69
4809 5231 2.126307 CTGCGTGTCCTCTCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
4810 5232 2.910479 TGCGTGTCCTCTCGGTGT 60.910 61.111 0.00 0.00 0.00 4.16
4811 5233 2.126424 GCGTGTCCTCTCGGTGTC 60.126 66.667 0.00 0.00 0.00 3.67
4812 5234 2.567049 CGTGTCCTCTCGGTGTCC 59.433 66.667 0.00 0.00 0.00 4.02
4822 5244 3.449227 CGGTGTCCGCTCTGGCTA 61.449 66.667 0.00 0.00 41.17 3.93
4823 5245 2.184579 GGTGTCCGCTCTGGCTAC 59.815 66.667 0.00 0.00 37.80 3.58
4824 5246 2.184579 GTGTCCGCTCTGGCTACC 59.815 66.667 0.00 0.00 37.80 3.18
4825 5247 3.075005 TGTCCGCTCTGGCTACCC 61.075 66.667 0.00 0.00 37.80 3.69
4826 5248 2.760385 GTCCGCTCTGGCTACCCT 60.760 66.667 0.00 0.00 37.80 4.34
4827 5249 2.759973 TCCGCTCTGGCTACCCTG 60.760 66.667 0.00 0.00 37.80 4.45
4828 5250 3.077556 CCGCTCTGGCTACCCTGT 61.078 66.667 0.00 0.00 36.09 4.00
4829 5251 2.185350 CGCTCTGGCTACCCTGTG 59.815 66.667 0.00 0.00 36.09 3.66
4830 5252 2.650116 CGCTCTGGCTACCCTGTGT 61.650 63.158 0.00 0.00 36.09 3.72
4831 5253 1.078848 GCTCTGGCTACCCTGTGTG 60.079 63.158 0.00 0.00 35.22 3.82
4832 5254 1.599047 CTCTGGCTACCCTGTGTGG 59.401 63.158 0.00 0.00 0.00 4.17
4833 5255 1.152118 TCTGGCTACCCTGTGTGGT 60.152 57.895 0.00 0.00 42.62 4.16
4834 5256 1.192146 TCTGGCTACCCTGTGTGGTC 61.192 60.000 0.00 0.00 39.91 4.02
4835 5257 1.152118 TGGCTACCCTGTGTGGTCT 60.152 57.895 0.00 0.00 39.91 3.85
4836 5258 0.766674 TGGCTACCCTGTGTGGTCTT 60.767 55.000 0.00 0.00 39.91 3.01
4837 5259 0.400594 GGCTACCCTGTGTGGTCTTT 59.599 55.000 0.00 0.00 39.91 2.52
4838 5260 1.202891 GGCTACCCTGTGTGGTCTTTT 60.203 52.381 0.00 0.00 39.91 2.27
4839 5261 2.583143 GCTACCCTGTGTGGTCTTTTT 58.417 47.619 0.00 0.00 39.91 1.94
4855 5277 2.414058 TTTTTATATGCATGCGCGGG 57.586 45.000 14.09 0.00 42.97 6.13
4856 5278 0.595588 TTTTATATGCATGCGCGGGG 59.404 50.000 14.09 0.00 42.97 5.73
4857 5279 1.240641 TTTATATGCATGCGCGGGGG 61.241 55.000 14.09 0.00 42.97 5.40
4858 5280 2.404566 TTATATGCATGCGCGGGGGT 62.405 55.000 14.09 0.00 42.97 4.95
4869 5291 4.676951 CGGGGGTGGCCACAACAT 62.677 66.667 35.78 0.00 35.45 2.71
4870 5292 2.679996 GGGGGTGGCCACAACATC 60.680 66.667 35.78 18.63 35.45 3.06
4871 5293 2.679996 GGGGTGGCCACAACATCC 60.680 66.667 35.78 26.01 38.42 3.51
4872 5294 2.117206 GGGTGGCCACAACATCCA 59.883 61.111 35.78 0.00 38.99 3.41
4874 5296 1.228552 GGTGGCCACAACATCCACT 60.229 57.895 35.78 0.00 47.00 4.00
4875 5297 1.244019 GGTGGCCACAACATCCACTC 61.244 60.000 35.78 11.80 47.00 3.51
4876 5298 0.250901 GTGGCCACAACATCCACTCT 60.251 55.000 31.23 0.00 45.04 3.24
4877 5299 0.478072 TGGCCACAACATCCACTCTT 59.522 50.000 0.00 0.00 0.00 2.85
4878 5300 1.168714 GGCCACAACATCCACTCTTC 58.831 55.000 0.00 0.00 0.00 2.87
4879 5301 1.271597 GGCCACAACATCCACTCTTCT 60.272 52.381 0.00 0.00 0.00 2.85
4880 5302 2.079925 GCCACAACATCCACTCTTCTC 58.920 52.381 0.00 0.00 0.00 2.87
4881 5303 2.704572 CCACAACATCCACTCTTCTCC 58.295 52.381 0.00 0.00 0.00 3.71
4882 5304 2.616510 CCACAACATCCACTCTTCTCCC 60.617 54.545 0.00 0.00 0.00 4.30
4883 5305 2.304180 CACAACATCCACTCTTCTCCCT 59.696 50.000 0.00 0.00 0.00 4.20
4884 5306 2.569404 ACAACATCCACTCTTCTCCCTC 59.431 50.000 0.00 0.00 0.00 4.30
4885 5307 1.872773 ACATCCACTCTTCTCCCTCC 58.127 55.000 0.00 0.00 0.00 4.30
4886 5308 1.127343 CATCCACTCTTCTCCCTCCC 58.873 60.000 0.00 0.00 0.00 4.30
4887 5309 1.022903 ATCCACTCTTCTCCCTCCCT 58.977 55.000 0.00 0.00 0.00 4.20
4888 5310 0.336737 TCCACTCTTCTCCCTCCCTC 59.663 60.000 0.00 0.00 0.00 4.30
4889 5311 0.338120 CCACTCTTCTCCCTCCCTCT 59.662 60.000 0.00 0.00 0.00 3.69
4890 5312 1.484038 CACTCTTCTCCCTCCCTCTG 58.516 60.000 0.00 0.00 0.00 3.35
4891 5313 1.089123 ACTCTTCTCCCTCCCTCTGT 58.911 55.000 0.00 0.00 0.00 3.41
4892 5314 1.006639 ACTCTTCTCCCTCCCTCTGTC 59.993 57.143 0.00 0.00 0.00 3.51
4893 5315 0.336737 TCTTCTCCCTCCCTCTGTCC 59.663 60.000 0.00 0.00 0.00 4.02
4894 5316 0.689412 CTTCTCCCTCCCTCTGTCCC 60.689 65.000 0.00 0.00 0.00 4.46
4895 5317 2.041405 CTCCCTCCCTCTGTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
4896 5318 2.540910 TCCCTCCCTCTGTCCCCT 60.541 66.667 0.00 0.00 0.00 4.79
4897 5319 2.366167 CCCTCCCTCTGTCCCCTG 60.366 72.222 0.00 0.00 0.00 4.45
4898 5320 2.780693 CCTCCCTCTGTCCCCTGA 59.219 66.667 0.00 0.00 0.00 3.86
4899 5321 1.687493 CCTCCCTCTGTCCCCTGAC 60.687 68.421 0.00 0.00 42.12 3.51
4910 5332 2.582052 GTCCCCTGACAAACACAATCA 58.418 47.619 0.00 0.00 41.37 2.57
4911 5333 2.955660 GTCCCCTGACAAACACAATCAA 59.044 45.455 0.00 0.00 41.37 2.57
4912 5334 2.955660 TCCCCTGACAAACACAATCAAC 59.044 45.455 0.00 0.00 0.00 3.18
4913 5335 2.958355 CCCCTGACAAACACAATCAACT 59.042 45.455 0.00 0.00 0.00 3.16
4914 5336 3.004734 CCCCTGACAAACACAATCAACTC 59.995 47.826 0.00 0.00 0.00 3.01
4915 5337 3.885297 CCCTGACAAACACAATCAACTCT 59.115 43.478 0.00 0.00 0.00 3.24
4916 5338 5.063204 CCCTGACAAACACAATCAACTCTA 58.937 41.667 0.00 0.00 0.00 2.43
4917 5339 5.180117 CCCTGACAAACACAATCAACTCTAG 59.820 44.000 0.00 0.00 0.00 2.43
4918 5340 5.334414 CCTGACAAACACAATCAACTCTAGC 60.334 44.000 0.00 0.00 0.00 3.42
4919 5341 4.515191 TGACAAACACAATCAACTCTAGCC 59.485 41.667 0.00 0.00 0.00 3.93
4920 5342 4.460263 ACAAACACAATCAACTCTAGCCA 58.540 39.130 0.00 0.00 0.00 4.75
4921 5343 5.072741 ACAAACACAATCAACTCTAGCCAT 58.927 37.500 0.00 0.00 0.00 4.40
4922 5344 5.536161 ACAAACACAATCAACTCTAGCCATT 59.464 36.000 0.00 0.00 0.00 3.16
4923 5345 5.633830 AACACAATCAACTCTAGCCATTG 57.366 39.130 0.00 0.00 0.00 2.82
4924 5346 4.655963 ACACAATCAACTCTAGCCATTGT 58.344 39.130 0.00 0.00 38.03 2.71
4925 5347 4.697352 ACACAATCAACTCTAGCCATTGTC 59.303 41.667 0.00 0.00 35.89 3.18
4926 5348 3.935203 ACAATCAACTCTAGCCATTGTCG 59.065 43.478 0.00 0.00 33.36 4.35
4927 5349 2.010145 TCAACTCTAGCCATTGTCGC 57.990 50.000 0.00 0.00 0.00 5.19
4928 5350 1.009829 CAACTCTAGCCATTGTCGCC 58.990 55.000 0.00 0.00 0.00 5.54
4929 5351 0.460284 AACTCTAGCCATTGTCGCCG 60.460 55.000 0.00 0.00 0.00 6.46
4930 5352 2.202878 TCTAGCCATTGTCGCCGC 60.203 61.111 0.00 0.00 0.00 6.53
4931 5353 3.272334 CTAGCCATTGTCGCCGCC 61.272 66.667 0.00 0.00 0.00 6.13
4932 5354 4.849310 TAGCCATTGTCGCCGCCC 62.849 66.667 0.00 0.00 0.00 6.13
4937 5359 4.424711 ATTGTCGCCGCCCACCAT 62.425 61.111 0.00 0.00 0.00 3.55
4954 5376 0.378257 CATGCCGTGGAAGTACATGC 59.622 55.000 0.00 0.00 32.54 4.06
4955 5377 0.748005 ATGCCGTGGAAGTACATGCC 60.748 55.000 0.00 0.00 0.00 4.40
4956 5378 2.112815 GCCGTGGAAGTACATGCCC 61.113 63.158 0.00 0.00 0.00 5.36
4957 5379 1.451387 CCGTGGAAGTACATGCCCC 60.451 63.158 0.00 0.00 0.00 5.80
4958 5380 1.813753 CGTGGAAGTACATGCCCCG 60.814 63.158 0.00 0.00 0.00 5.73
4959 5381 1.600107 GTGGAAGTACATGCCCCGA 59.400 57.895 0.00 0.00 0.00 5.14
4960 5382 0.462047 GTGGAAGTACATGCCCCGAG 60.462 60.000 0.00 0.00 0.00 4.63
4961 5383 1.523938 GGAAGTACATGCCCCGAGC 60.524 63.158 0.00 0.00 44.14 5.03
4971 5393 4.552365 CCCCGAGCGCATGACCAT 62.552 66.667 11.47 0.00 0.00 3.55
4972 5394 2.421314 CCCGAGCGCATGACCATA 59.579 61.111 11.47 0.00 0.00 2.74
4973 5395 1.227527 CCCGAGCGCATGACCATAA 60.228 57.895 11.47 0.00 0.00 1.90
4974 5396 1.224069 CCCGAGCGCATGACCATAAG 61.224 60.000 11.47 0.00 0.00 1.73
4975 5397 1.224069 CCGAGCGCATGACCATAAGG 61.224 60.000 11.47 0.00 42.21 2.69
4986 5408 1.839894 CCATAAGGTGGGCTCCTCC 59.160 63.158 4.63 4.63 44.79 4.30
4990 5412 2.612115 AGGTGGGCTCCTCCTTGG 60.612 66.667 8.54 0.00 44.09 3.61
4991 5413 3.732849 GGTGGGCTCCTCCTTGGG 61.733 72.222 5.39 0.00 34.62 4.12
4992 5414 3.732849 GTGGGCTCCTCCTTGGGG 61.733 72.222 0.00 0.00 40.05 4.96
4997 5419 4.120755 CTCCTCCTTGGGGGCAGC 62.121 72.222 0.00 0.00 36.20 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.453390 TGAACGCATGCAAACACACA 59.547 45.000 19.57 4.69 0.00 3.72
1 2 0.845768 GTGAACGCATGCAAACACAC 59.154 50.000 19.57 15.01 0.00 3.82
2 3 0.453390 TGTGAACGCATGCAAACACA 59.547 45.000 25.71 25.71 36.22 3.72
3 4 1.518102 CTTGTGAACGCATGCAAACAC 59.482 47.619 19.57 21.36 0.00 3.32
4 5 1.535649 CCTTGTGAACGCATGCAAACA 60.536 47.619 19.57 12.56 0.00 2.83
5 6 1.130955 CCTTGTGAACGCATGCAAAC 58.869 50.000 19.57 10.04 0.00 2.93
6 7 1.028130 TCCTTGTGAACGCATGCAAA 58.972 45.000 19.57 0.00 0.00 3.68
7 8 1.068402 CATCCTTGTGAACGCATGCAA 60.068 47.619 19.57 1.83 0.00 4.08
8 9 0.522626 CATCCTTGTGAACGCATGCA 59.477 50.000 19.57 0.00 0.00 3.96
9 10 0.804364 TCATCCTTGTGAACGCATGC 59.196 50.000 7.91 7.91 0.00 4.06
10 11 2.079158 ACTCATCCTTGTGAACGCATG 58.921 47.619 0.00 0.00 0.00 4.06
11 12 2.079158 CACTCATCCTTGTGAACGCAT 58.921 47.619 0.00 0.00 36.38 4.73
12 13 1.202639 ACACTCATCCTTGTGAACGCA 60.203 47.619 0.00 0.00 37.59 5.24
13 14 1.512926 ACACTCATCCTTGTGAACGC 58.487 50.000 0.00 0.00 37.59 4.84
14 15 4.245660 ACATACACTCATCCTTGTGAACG 58.754 43.478 0.00 0.00 37.59 3.95
15 16 6.818644 ACATACATACACTCATCCTTGTGAAC 59.181 38.462 0.00 0.00 37.59 3.18
16 17 6.946340 ACATACATACACTCATCCTTGTGAA 58.054 36.000 0.00 0.00 37.59 3.18
17 18 6.544928 ACATACATACACTCATCCTTGTGA 57.455 37.500 0.00 0.00 37.59 3.58
18 19 7.928167 ACATACATACATACACTCATCCTTGTG 59.072 37.037 0.00 0.00 39.80 3.33
19 20 8.023021 ACATACATACATACACTCATCCTTGT 57.977 34.615 0.00 0.00 0.00 3.16
22 23 9.314133 ACATACATACATACATACACTCATCCT 57.686 33.333 0.00 0.00 0.00 3.24
37 38 9.736023 CGCTCATACATACATACATACATACAT 57.264 33.333 0.00 0.00 0.00 2.29
38 39 8.736244 ACGCTCATACATACATACATACATACA 58.264 33.333 0.00 0.00 0.00 2.29
41 42 9.736023 CATACGCTCATACATACATACATACAT 57.264 33.333 0.00 0.00 0.00 2.29
42 43 8.736244 ACATACGCTCATACATACATACATACA 58.264 33.333 0.00 0.00 0.00 2.29
43 44 9.010366 CACATACGCTCATACATACATACATAC 57.990 37.037 0.00 0.00 0.00 2.39
44 45 8.736244 ACACATACGCTCATACATACATACATA 58.264 33.333 0.00 0.00 0.00 2.29
45 46 7.602753 ACACATACGCTCATACATACATACAT 58.397 34.615 0.00 0.00 0.00 2.29
46 47 6.977213 ACACATACGCTCATACATACATACA 58.023 36.000 0.00 0.00 0.00 2.29
47 48 7.271438 CAGACACATACGCTCATACATACATAC 59.729 40.741 0.00 0.00 0.00 2.39
48 49 7.040686 ACAGACACATACGCTCATACATACATA 60.041 37.037 0.00 0.00 0.00 2.29
49 50 6.152379 CAGACACATACGCTCATACATACAT 58.848 40.000 0.00 0.00 0.00 2.29
50 51 5.067283 ACAGACACATACGCTCATACATACA 59.933 40.000 0.00 0.00 0.00 2.29
51 52 5.520632 ACAGACACATACGCTCATACATAC 58.479 41.667 0.00 0.00 0.00 2.39
52 53 5.767816 ACAGACACATACGCTCATACATA 57.232 39.130 0.00 0.00 0.00 2.29
53 54 4.655762 ACAGACACATACGCTCATACAT 57.344 40.909 0.00 0.00 0.00 2.29
54 55 4.201980 GGTACAGACACATACGCTCATACA 60.202 45.833 0.00 0.00 0.00 2.29
55 56 4.288531 GGTACAGACACATACGCTCATAC 58.711 47.826 0.00 0.00 0.00 2.39
56 57 3.002965 CGGTACAGACACATACGCTCATA 59.997 47.826 0.00 0.00 0.00 2.15
57 58 2.223502 CGGTACAGACACATACGCTCAT 60.224 50.000 0.00 0.00 0.00 2.90
58 59 1.131693 CGGTACAGACACATACGCTCA 59.868 52.381 0.00 0.00 0.00 4.26
59 60 1.131883 ACGGTACAGACACATACGCTC 59.868 52.381 0.00 0.00 0.00 5.03
60 61 1.135489 CACGGTACAGACACATACGCT 60.135 52.381 0.00 0.00 0.00 5.07
61 62 1.265568 CACGGTACAGACACATACGC 58.734 55.000 0.00 0.00 0.00 4.42
62 63 2.624316 ACACGGTACAGACACATACG 57.376 50.000 0.00 0.00 0.00 3.06
63 64 5.702865 TCTTAACACGGTACAGACACATAC 58.297 41.667 0.00 0.00 0.00 2.39
64 65 5.963176 TCTTAACACGGTACAGACACATA 57.037 39.130 0.00 0.00 0.00 2.29
65 66 4.859304 TCTTAACACGGTACAGACACAT 57.141 40.909 0.00 0.00 0.00 3.21
66 67 4.652421 TTCTTAACACGGTACAGACACA 57.348 40.909 0.00 0.00 0.00 3.72
67 68 5.971895 TTTTCTTAACACGGTACAGACAC 57.028 39.130 0.00 0.00 0.00 3.67
68 69 5.873712 TGTTTTTCTTAACACGGTACAGACA 59.126 36.000 0.00 0.00 33.31 3.41
69 70 6.348621 TGTTTTTCTTAACACGGTACAGAC 57.651 37.500 0.00 0.00 33.31 3.51
70 71 6.455380 CGTTGTTTTTCTTAACACGGTACAGA 60.455 38.462 0.00 0.00 37.72 3.41
71 72 5.673717 CGTTGTTTTTCTTAACACGGTACAG 59.326 40.000 0.00 0.00 37.72 2.74
72 73 5.349817 TCGTTGTTTTTCTTAACACGGTACA 59.650 36.000 0.00 0.00 37.72 2.90
73 74 5.794720 TCGTTGTTTTTCTTAACACGGTAC 58.205 37.500 0.00 0.00 37.72 3.34
74 75 5.809562 TCTCGTTGTTTTTCTTAACACGGTA 59.190 36.000 0.00 0.00 37.72 4.02
75 76 4.630940 TCTCGTTGTTTTTCTTAACACGGT 59.369 37.500 0.00 0.00 37.72 4.83
76 77 5.146482 TCTCGTTGTTTTTCTTAACACGG 57.854 39.130 0.00 0.00 37.72 4.94
77 78 5.166583 CGTTCTCGTTGTTTTTCTTAACACG 59.833 40.000 0.00 0.00 37.72 4.49
78 79 6.242829 TCGTTCTCGTTGTTTTTCTTAACAC 58.757 36.000 0.00 0.00 35.47 3.32
79 80 6.310956 TCTCGTTCTCGTTGTTTTTCTTAACA 59.689 34.615 0.00 0.00 38.33 2.41
80 81 6.699063 TCTCGTTCTCGTTGTTTTTCTTAAC 58.301 36.000 0.00 0.00 38.33 2.01
81 82 6.890663 TCTCGTTCTCGTTGTTTTTCTTAA 57.109 33.333 0.00 0.00 38.33 1.85
82 83 6.532657 ACTTCTCGTTCTCGTTGTTTTTCTTA 59.467 34.615 0.00 0.00 38.33 2.10
83 84 5.350640 ACTTCTCGTTCTCGTTGTTTTTCTT 59.649 36.000 0.00 0.00 38.33 2.52
84 85 4.868734 ACTTCTCGTTCTCGTTGTTTTTCT 59.131 37.500 0.00 0.00 38.33 2.52
85 86 5.140077 ACTTCTCGTTCTCGTTGTTTTTC 57.860 39.130 0.00 0.00 38.33 2.29
86 87 6.312180 ACTTACTTCTCGTTCTCGTTGTTTTT 59.688 34.615 0.00 0.00 38.33 1.94
87 88 5.809051 ACTTACTTCTCGTTCTCGTTGTTTT 59.191 36.000 0.00 0.00 38.33 2.43
88 89 5.346522 ACTTACTTCTCGTTCTCGTTGTTT 58.653 37.500 0.00 0.00 38.33 2.83
89 90 4.929781 ACTTACTTCTCGTTCTCGTTGTT 58.070 39.130 0.00 0.00 38.33 2.83
90 91 4.564940 ACTTACTTCTCGTTCTCGTTGT 57.435 40.909 0.00 0.00 38.33 3.32
91 92 5.885020 AAACTTACTTCTCGTTCTCGTTG 57.115 39.130 0.00 0.00 38.33 4.10
92 93 5.276726 GCAAAACTTACTTCTCGTTCTCGTT 60.277 40.000 0.00 0.00 38.33 3.85
93 94 4.208666 GCAAAACTTACTTCTCGTTCTCGT 59.791 41.667 0.00 0.00 38.33 4.18
94 95 4.208460 TGCAAAACTTACTTCTCGTTCTCG 59.792 41.667 0.00 0.00 38.55 4.04
95 96 5.652744 TGCAAAACTTACTTCTCGTTCTC 57.347 39.130 0.00 0.00 0.00 2.87
96 97 6.619801 ATTGCAAAACTTACTTCTCGTTCT 57.380 33.333 1.71 0.00 0.00 3.01
97 98 6.910433 TGAATTGCAAAACTTACTTCTCGTTC 59.090 34.615 1.71 0.00 0.00 3.95
98 99 6.791303 TGAATTGCAAAACTTACTTCTCGTT 58.209 32.000 1.71 0.00 0.00 3.85
99 100 6.371809 TGAATTGCAAAACTTACTTCTCGT 57.628 33.333 1.71 0.00 0.00 4.18
100 101 7.059945 GTGATGAATTGCAAAACTTACTTCTCG 59.940 37.037 1.71 0.00 0.00 4.04
101 102 7.059945 CGTGATGAATTGCAAAACTTACTTCTC 59.940 37.037 1.71 2.01 0.00 2.87
102 103 6.857964 CGTGATGAATTGCAAAACTTACTTCT 59.142 34.615 1.71 0.00 0.00 2.85
103 104 6.855914 TCGTGATGAATTGCAAAACTTACTTC 59.144 34.615 1.71 1.10 0.00 3.01
104 105 6.734137 TCGTGATGAATTGCAAAACTTACTT 58.266 32.000 1.71 0.00 0.00 2.24
105 106 6.312399 TCGTGATGAATTGCAAAACTTACT 57.688 33.333 1.71 0.00 0.00 2.24
106 107 7.566858 AATCGTGATGAATTGCAAAACTTAC 57.433 32.000 1.71 0.00 0.00 2.34
107 108 9.684448 TTAAATCGTGATGAATTGCAAAACTTA 57.316 25.926 1.71 0.00 0.00 2.24
108 109 8.586570 TTAAATCGTGATGAATTGCAAAACTT 57.413 26.923 1.71 0.00 0.00 2.66
109 110 8.081633 TCTTAAATCGTGATGAATTGCAAAACT 58.918 29.630 1.71 0.00 0.00 2.66
110 111 8.155923 GTCTTAAATCGTGATGAATTGCAAAAC 58.844 33.333 1.71 0.80 0.00 2.43
111 112 7.060518 CGTCTTAAATCGTGATGAATTGCAAAA 59.939 33.333 1.71 0.00 0.00 2.44
112 113 6.522855 CGTCTTAAATCGTGATGAATTGCAAA 59.477 34.615 1.71 0.00 0.00 3.68
113 114 6.020984 CGTCTTAAATCGTGATGAATTGCAA 58.979 36.000 0.00 0.00 0.00 4.08
114 115 5.350091 TCGTCTTAAATCGTGATGAATTGCA 59.650 36.000 0.00 0.00 0.00 4.08
115 116 5.795766 TCGTCTTAAATCGTGATGAATTGC 58.204 37.500 0.00 0.00 0.00 3.56
116 117 7.221828 TCTCGTCTTAAATCGTGATGAATTG 57.778 36.000 0.00 0.00 0.00 2.32
117 118 6.477033 CCTCTCGTCTTAAATCGTGATGAATT 59.523 38.462 4.89 0.00 0.00 2.17
118 119 5.980116 CCTCTCGTCTTAAATCGTGATGAAT 59.020 40.000 4.89 0.00 0.00 2.57
119 120 5.340803 CCTCTCGTCTTAAATCGTGATGAA 58.659 41.667 4.89 0.00 0.00 2.57
120 121 4.202020 CCCTCTCGTCTTAAATCGTGATGA 60.202 45.833 4.89 0.00 0.00 2.92
121 122 4.045104 CCCTCTCGTCTTAAATCGTGATG 58.955 47.826 4.89 3.41 0.00 3.07
122 123 3.700038 ACCCTCTCGTCTTAAATCGTGAT 59.300 43.478 4.89 0.00 0.00 3.06
123 124 3.087031 ACCCTCTCGTCTTAAATCGTGA 58.913 45.455 4.53 4.53 0.00 4.35
124 125 3.505464 ACCCTCTCGTCTTAAATCGTG 57.495 47.619 0.00 0.00 0.00 4.35
125 126 4.532314 AAACCCTCTCGTCTTAAATCGT 57.468 40.909 0.00 0.00 0.00 3.73
126 127 6.956299 TTTAAACCCTCTCGTCTTAAATCG 57.044 37.500 0.00 0.00 0.00 3.34
127 128 7.625817 GCCTTTTAAACCCTCTCGTCTTAAATC 60.626 40.741 0.00 0.00 0.00 2.17
128 129 6.150641 GCCTTTTAAACCCTCTCGTCTTAAAT 59.849 38.462 0.00 0.00 0.00 1.40
129 130 5.471116 GCCTTTTAAACCCTCTCGTCTTAAA 59.529 40.000 0.00 0.00 0.00 1.52
130 131 4.999311 GCCTTTTAAACCCTCTCGTCTTAA 59.001 41.667 0.00 0.00 0.00 1.85
168 169 7.950512 TCCACTAATTGCATTTTCTCAGAAAA 58.049 30.769 14.99 14.99 0.00 2.29
172 173 6.320171 CACTCCACTAATTGCATTTTCTCAG 58.680 40.000 0.00 0.00 0.00 3.35
173 174 5.335897 GCACTCCACTAATTGCATTTTCTCA 60.336 40.000 0.00 0.00 34.97 3.27
174 175 5.098211 GCACTCCACTAATTGCATTTTCTC 58.902 41.667 0.00 0.00 34.97 2.87
175 176 4.523943 TGCACTCCACTAATTGCATTTTCT 59.476 37.500 0.00 0.00 40.01 2.52
176 177 4.808558 TGCACTCCACTAATTGCATTTTC 58.191 39.130 0.00 0.00 40.01 2.29
177 178 4.870123 TGCACTCCACTAATTGCATTTT 57.130 36.364 0.00 0.00 40.01 1.82
179 180 4.463539 TCATTGCACTCCACTAATTGCATT 59.536 37.500 0.00 0.00 44.16 3.56
180 181 4.018490 TCATTGCACTCCACTAATTGCAT 58.982 39.130 0.00 0.00 44.16 3.96
182 183 4.439305 TTCATTGCACTCCACTAATTGC 57.561 40.909 0.00 0.00 35.45 3.56
183 184 6.623486 TGATTTCATTGCACTCCACTAATTG 58.377 36.000 0.00 0.00 0.00 2.32
185 186 7.414222 AATGATTTCATTGCACTCCACTAAT 57.586 32.000 5.03 0.00 44.22 1.73
201 210 3.170505 TGATTGCGCGTTCAATGATTTC 58.829 40.909 15.29 3.96 36.85 2.17
205 214 1.803555 TCTTGATTGCGCGTTCAATGA 59.196 42.857 20.72 17.08 36.85 2.57
231 240 4.202367 GGGCTGAGGTGCAAATAGTACTAT 60.202 45.833 9.71 9.71 32.88 2.12
233 242 2.092914 GGGCTGAGGTGCAAATAGTACT 60.093 50.000 0.00 0.00 32.88 2.73
234 243 2.289565 GGGCTGAGGTGCAAATAGTAC 58.710 52.381 0.00 0.00 34.04 2.73
235 244 1.912731 TGGGCTGAGGTGCAAATAGTA 59.087 47.619 0.00 0.00 34.04 1.82
236 245 0.698238 TGGGCTGAGGTGCAAATAGT 59.302 50.000 0.00 0.00 34.04 2.12
237 246 1.952296 GATGGGCTGAGGTGCAAATAG 59.048 52.381 0.00 0.00 34.04 1.73
238 247 1.284491 TGATGGGCTGAGGTGCAAATA 59.716 47.619 0.00 0.00 34.04 1.40
239 248 0.040058 TGATGGGCTGAGGTGCAAAT 59.960 50.000 0.00 0.00 34.04 2.32
255 264 4.796231 GCTCGTCGCCGTGGTGAT 62.796 66.667 5.30 0.00 36.98 3.06
274 283 3.774599 GATGGATGTGGGTCGGGGC 62.775 68.421 0.00 0.00 0.00 5.80
284 293 0.184451 GGTGCTGGATGGATGGATGT 59.816 55.000 0.00 0.00 0.00 3.06
285 294 0.184211 TGGTGCTGGATGGATGGATG 59.816 55.000 0.00 0.00 0.00 3.51
286 295 0.184451 GTGGTGCTGGATGGATGGAT 59.816 55.000 0.00 0.00 0.00 3.41
287 296 1.609239 GTGGTGCTGGATGGATGGA 59.391 57.895 0.00 0.00 0.00 3.41
288 297 1.820906 CGTGGTGCTGGATGGATGG 60.821 63.158 0.00 0.00 0.00 3.51
289 298 1.091771 GTCGTGGTGCTGGATGGATG 61.092 60.000 0.00 0.00 0.00 3.51
311 320 2.583441 GGGGGTTTGGCTTCTTGGC 61.583 63.158 0.00 0.00 42.18 4.52
312 321 2.275380 CGGGGGTTTGGCTTCTTGG 61.275 63.158 0.00 0.00 0.00 3.61
313 322 0.825840 TTCGGGGGTTTGGCTTCTTG 60.826 55.000 0.00 0.00 0.00 3.02
314 323 0.539669 CTTCGGGGGTTTGGCTTCTT 60.540 55.000 0.00 0.00 0.00 2.52
315 324 1.074951 CTTCGGGGGTTTGGCTTCT 59.925 57.895 0.00 0.00 0.00 2.85
316 325 2.636412 GCTTCGGGGGTTTGGCTTC 61.636 63.158 0.00 0.00 0.00 3.86
317 326 2.600470 GCTTCGGGGGTTTGGCTT 60.600 61.111 0.00 0.00 0.00 4.35
319 328 3.062466 GAGCTTCGGGGGTTTGGC 61.062 66.667 0.00 0.00 0.00 4.52
321 330 3.431725 GCGAGCTTCGGGGGTTTG 61.432 66.667 7.50 0.00 40.84 2.93
322 331 4.717313 GGCGAGCTTCGGGGGTTT 62.717 66.667 7.50 0.00 40.84 3.27
330 339 4.168291 CTGGAGGGGGCGAGCTTC 62.168 72.222 0.00 0.00 0.00 3.86
331 340 4.722535 TCTGGAGGGGGCGAGCTT 62.723 66.667 0.00 0.00 0.00 3.74
334 343 3.151022 GAGTCTGGAGGGGGCGAG 61.151 72.222 0.00 0.00 0.00 5.03
335 344 4.779733 GGAGTCTGGAGGGGGCGA 62.780 72.222 0.00 0.00 0.00 5.54
337 346 3.403558 GTGGAGTCTGGAGGGGGC 61.404 72.222 0.00 0.00 0.00 5.80
338 347 2.689034 GGTGGAGTCTGGAGGGGG 60.689 72.222 0.00 0.00 0.00 5.40
339 348 2.689034 GGGTGGAGTCTGGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
340 349 2.689034 GGGGTGGAGTCTGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
341 350 2.689034 GGGGGTGGAGTCTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
342 351 3.077556 CGGGGGTGGAGTCTGGAG 61.078 72.222 0.00 0.00 0.00 3.86
343 352 2.682928 TTTCGGGGGTGGAGTCTGGA 62.683 60.000 0.00 0.00 0.00 3.86
344 353 1.562672 ATTTCGGGGGTGGAGTCTGG 61.563 60.000 0.00 0.00 0.00 3.86
345 354 0.328258 AATTTCGGGGGTGGAGTCTG 59.672 55.000 0.00 0.00 0.00 3.51
346 355 0.618981 GAATTTCGGGGGTGGAGTCT 59.381 55.000 0.00 0.00 0.00 3.24
347 356 0.326927 TGAATTTCGGGGGTGGAGTC 59.673 55.000 0.00 0.00 0.00 3.36
348 357 0.774908 TTGAATTTCGGGGGTGGAGT 59.225 50.000 0.00 0.00 0.00 3.85
349 358 1.917872 TTTGAATTTCGGGGGTGGAG 58.082 50.000 0.00 0.00 0.00 3.86
350 359 2.452505 GATTTGAATTTCGGGGGTGGA 58.547 47.619 0.00 0.00 0.00 4.02
351 360 1.480545 GGATTTGAATTTCGGGGGTGG 59.519 52.381 0.00 0.00 0.00 4.61
352 361 1.480545 GGGATTTGAATTTCGGGGGTG 59.519 52.381 0.00 0.00 0.00 4.61
353 362 1.077993 TGGGATTTGAATTTCGGGGGT 59.922 47.619 0.00 0.00 0.00 4.95
354 363 1.480545 GTGGGATTTGAATTTCGGGGG 59.519 52.381 0.00 0.00 0.00 5.40
355 364 1.134175 CGTGGGATTTGAATTTCGGGG 59.866 52.381 0.00 0.00 0.00 5.73
376 385 4.787280 CCGAGGGGTGGGAGCTCT 62.787 72.222 14.64 0.00 0.00 4.09
385 394 4.376225 TGAATTTTACTTTCCGAGGGGT 57.624 40.909 0.00 0.00 33.83 4.95
386 395 5.709966 CTTTGAATTTTACTTTCCGAGGGG 58.290 41.667 0.00 0.00 0.00 4.79
390 399 5.776173 TGGCTTTGAATTTTACTTTCCGA 57.224 34.783 0.00 0.00 0.00 4.55
392 401 5.576774 CCGATGGCTTTGAATTTTACTTTCC 59.423 40.000 0.00 0.00 0.00 3.13
393 402 6.089417 CACCGATGGCTTTGAATTTTACTTTC 59.911 38.462 0.00 0.00 0.00 2.62
394 403 5.925969 CACCGATGGCTTTGAATTTTACTTT 59.074 36.000 0.00 0.00 0.00 2.66
395 404 5.469479 CACCGATGGCTTTGAATTTTACTT 58.531 37.500 0.00 0.00 0.00 2.24
398 407 3.194542 CCCACCGATGGCTTTGAATTTTA 59.805 43.478 0.00 0.00 45.76 1.52
399 408 2.028203 CCCACCGATGGCTTTGAATTTT 60.028 45.455 0.00 0.00 45.76 1.82
401 410 1.185315 CCCACCGATGGCTTTGAATT 58.815 50.000 0.00 0.00 45.76 2.17
403 412 1.976474 GCCCACCGATGGCTTTGAA 60.976 57.895 0.00 0.00 45.76 2.69
404 413 2.361104 GCCCACCGATGGCTTTGA 60.361 61.111 0.00 0.00 45.76 2.69
477 493 2.223363 GGCTAGCCTCGCTTTTGATTTC 60.223 50.000 27.17 0.00 40.44 2.17
1095 1454 2.282958 AACCAGACGCGGAGAGGA 60.283 61.111 12.47 0.00 0.00 3.71
1115 1474 2.174639 ACAGTCCAAACAATCAGACCCA 59.825 45.455 0.00 0.00 0.00 4.51
1359 1718 2.219674 GCTAATGATTCGAGAACGGCAG 59.780 50.000 0.00 0.00 40.21 4.85
1360 1719 2.159099 AGCTAATGATTCGAGAACGGCA 60.159 45.455 0.00 0.00 40.21 5.69
1361 1720 2.474816 AGCTAATGATTCGAGAACGGC 58.525 47.619 0.00 0.00 40.21 5.68
1362 1721 3.670991 GCTAGCTAATGATTCGAGAACGG 59.329 47.826 7.70 0.00 40.21 4.44
1375 1734 5.415221 GTGACTTCAAGACTGCTAGCTAAT 58.585 41.667 17.23 0.44 0.00 1.73
1381 1740 2.965831 ACTGGTGACTTCAAGACTGCTA 59.034 45.455 0.00 0.00 0.00 3.49
1465 1824 6.758886 AGAGTAGAACAAAAGAAGTGTGTCTG 59.241 38.462 0.00 0.00 0.00 3.51
1492 1851 3.645884 CTGCCAATTGTTTGTTCCTGAG 58.354 45.455 4.43 0.00 0.00 3.35
1516 1876 3.312421 TGCTATTCACAGGCGCTAAAATC 59.688 43.478 7.64 0.00 0.00 2.17
1522 1882 1.817099 GCTGCTATTCACAGGCGCT 60.817 57.895 7.64 0.00 35.62 5.92
1539 1899 2.139118 CGCATCTAAGCTAAGAAGGGC 58.861 52.381 0.00 0.00 0.00 5.19
1562 1922 0.593128 GTGTCATCGCCAGCAAGTTT 59.407 50.000 0.00 0.00 0.00 2.66
1578 1938 2.269940 ACAGGAATGAGCTAAGGGTGT 58.730 47.619 0.00 0.00 0.00 4.16
1584 1944 8.574251 TTAAATTGCTAACAGGAATGAGCTAA 57.426 30.769 0.00 0.00 36.36 3.09
1617 1977 8.170553 CCCAAGAATTCAAAATTATTTCTTGCG 58.829 33.333 8.44 6.21 45.99 4.85
1620 1980 9.223099 CAGCCCAAGAATTCAAAATTATTTCTT 57.777 29.630 8.44 0.00 37.17 2.52
1626 1987 5.011943 ACAGCAGCCCAAGAATTCAAAATTA 59.988 36.000 8.44 0.00 0.00 1.40
1631 1992 1.888512 GACAGCAGCCCAAGAATTCAA 59.111 47.619 8.44 0.00 0.00 2.69
1640 2001 0.401356 TCAAGAATGACAGCAGCCCA 59.599 50.000 0.00 0.00 0.00 5.36
1644 2005 4.843220 AAGGTTTCAAGAATGACAGCAG 57.157 40.909 0.00 0.00 36.45 4.24
1725 2086 5.236282 CACATACATAGATCCTCTGCCAAG 58.764 45.833 0.00 0.00 0.00 3.61
1767 2128 2.704065 ACAACCCTACAGCTACAAGTGT 59.296 45.455 0.00 0.00 0.00 3.55
1775 2136 1.127567 TGAGCCACAACCCTACAGCT 61.128 55.000 0.00 0.00 0.00 4.24
1777 2138 1.278985 TGATGAGCCACAACCCTACAG 59.721 52.381 0.00 0.00 0.00 2.74
2000 2362 9.838339 GGTATATCCTTCTTATTACATGGATGG 57.162 37.037 0.00 0.00 36.02 3.51
2138 2500 2.360726 CCTGCCAGCACTGCATCA 60.361 61.111 3.30 0.00 38.22 3.07
2528 2890 3.895232 TCATTCTGGGTAGAAGTGCTC 57.105 47.619 0.00 0.00 45.53 4.26
2792 3154 7.106239 ACATCGGATTATTACCTTCCATCATC 58.894 38.462 0.00 0.00 0.00 2.92
2811 3173 1.335810 CAGCCCATGATGAAACATCGG 59.664 52.381 0.00 0.00 32.97 4.18
2813 3175 1.068127 GGCAGCCCATGATGAAACATC 59.932 52.381 0.00 4.98 0.00 3.06
2822 3184 4.175337 GCGGTAGGCAGCCCATGA 62.175 66.667 8.22 0.00 42.87 3.07
2900 3262 2.224378 ACATGTCCTATCCGAAGCCATG 60.224 50.000 0.00 0.00 33.74 3.66
2998 3360 3.309682 TGCTTGCAGAACGTATGATTAGC 59.690 43.478 4.95 9.10 0.00 3.09
3009 3371 2.413453 GCTAGTGTAGTGCTTGCAGAAC 59.587 50.000 0.00 0.00 35.41 3.01
3048 3415 1.198637 GGCAAGAACACTGTCAGATGC 59.801 52.381 6.91 6.85 0.00 3.91
3060 3427 4.021981 AGCTGGTCATTAAAAGGCAAGAAC 60.022 41.667 0.00 0.00 0.00 3.01
3176 3543 6.419710 GGAATGCACAGGTTACAACTTTAAAC 59.580 38.462 0.00 0.00 0.00 2.01
3328 3699 4.730657 CTTCAGAAGAATGTGCAATGGAC 58.269 43.478 3.82 0.00 32.31 4.02
3360 3731 3.897239 TCTTCTGAAGCTGTTTTTCCCA 58.103 40.909 12.54 0.00 0.00 4.37
3361 3732 4.097892 TGTTCTTCTGAAGCTGTTTTTCCC 59.902 41.667 12.54 0.00 32.15 3.97
3495 3889 4.126437 TGTGTCAGACATCAACAAACGAT 58.874 39.130 6.51 0.00 0.00 3.73
3567 3961 5.190528 AGAGCCCAAGTCTCAAGATCATAAA 59.809 40.000 0.00 0.00 33.15 1.40
3585 3979 9.077885 TGATATTACCAAAATGAAATAGAGCCC 57.922 33.333 0.00 0.00 0.00 5.19
3647 4050 2.941720 CAGCTTGAATGAGCCTAAGTCC 59.058 50.000 0.00 0.00 43.74 3.85
3655 4058 3.243002 GGAACATAGCAGCTTGAATGAGC 60.243 47.826 10.16 2.50 43.02 4.26
3802 4213 3.792401 TGCGGTGATGAACTAACCATAG 58.208 45.455 0.00 0.00 33.30 2.23
3826 4237 3.650942 ACCATGTACGGTCAATATGGGAT 59.349 43.478 10.32 0.00 41.96 3.85
3827 4238 3.042682 ACCATGTACGGTCAATATGGGA 58.957 45.455 10.32 0.00 41.96 4.37
3828 4239 3.485463 ACCATGTACGGTCAATATGGG 57.515 47.619 10.32 0.00 41.96 4.00
3829 4240 5.124776 ACAAAACCATGTACGGTCAATATGG 59.875 40.000 5.44 5.44 43.02 2.74
3933 4344 2.595463 GCTTGCACTGCCCACTCA 60.595 61.111 0.00 0.00 0.00 3.41
4002 4413 0.976641 AAGATCAGAAGCACGGGACA 59.023 50.000 0.00 0.00 0.00 4.02
4073 4491 7.074653 AGAAACAGAACCTAACCAATCAGTA 57.925 36.000 0.00 0.00 0.00 2.74
4130 4548 0.923403 CTCGACACACACACACACAG 59.077 55.000 0.00 0.00 0.00 3.66
4131 4549 0.245266 ACTCGACACACACACACACA 59.755 50.000 0.00 0.00 0.00 3.72
4141 4559 3.530265 ACCACAACTTTACTCGACACA 57.470 42.857 0.00 0.00 0.00 3.72
4145 4563 3.199677 CACCAACCACAACTTTACTCGA 58.800 45.455 0.00 0.00 0.00 4.04
4146 4564 2.286772 GCACCAACCACAACTTTACTCG 60.287 50.000 0.00 0.00 0.00 4.18
4163 4581 0.517316 CGTTACAAAGGAGCAGCACC 59.483 55.000 0.00 0.00 0.00 5.01
4184 4602 1.682854 ACCACAGGTGCTTGTTTCATG 59.317 47.619 0.00 0.00 32.98 3.07
4222 4640 2.660572 ACAGACAGACACTCACTCACT 58.339 47.619 0.00 0.00 0.00 3.41
4223 4641 3.119291 CAACAGACAGACACTCACTCAC 58.881 50.000 0.00 0.00 0.00 3.51
4224 4642 2.481969 GCAACAGACAGACACTCACTCA 60.482 50.000 0.00 0.00 0.00 3.41
4225 4643 2.131183 GCAACAGACAGACACTCACTC 58.869 52.381 0.00 0.00 0.00 3.51
4226 4644 1.202580 GGCAACAGACAGACACTCACT 60.203 52.381 0.00 0.00 0.00 3.41
4227 4645 1.221414 GGCAACAGACAGACACTCAC 58.779 55.000 0.00 0.00 0.00 3.51
4256 4674 0.951558 ACGCGCCTGTGAAAAAGAAT 59.048 45.000 5.73 0.00 0.00 2.40
4259 4677 1.646540 TCACGCGCCTGTGAAAAAG 59.353 52.632 14.62 0.00 45.40 2.27
4360 4779 1.302366 TTCTGACTGCACAGCAACAG 58.698 50.000 14.98 14.98 41.02 3.16
4361 4780 1.401552 GTTTCTGACTGCACAGCAACA 59.598 47.619 12.70 0.00 41.22 3.33
4364 4783 1.672363 CTTGTTTCTGACTGCACAGCA 59.328 47.619 0.00 0.00 37.75 4.41
4472 4894 4.262463 CCAGCAACTACTTCAGACAGGTTA 60.262 45.833 0.00 0.00 0.00 2.85
4498 4920 1.068250 GCTCCAGCCGATGACTACC 59.932 63.158 0.00 0.00 34.31 3.18
4505 4927 2.685017 TGGACAGCTCCAGCCGAT 60.685 61.111 0.00 0.00 42.15 4.18
4551 4973 3.742882 TGTCATTCTGTTTCGAAGCAGAG 59.257 43.478 33.56 26.12 45.03 3.35
4552 4974 3.727726 TGTCATTCTGTTTCGAAGCAGA 58.272 40.909 32.72 32.72 43.20 4.26
4561 4983 9.657419 AAACAAGAGAAATTTGTCATTCTGTTT 57.343 25.926 16.80 18.84 37.13 2.83
4572 4994 5.625311 GCGACAGGTAAACAAGAGAAATTTG 59.375 40.000 0.00 0.00 0.00 2.32
4573 4995 5.278315 GGCGACAGGTAAACAAGAGAAATTT 60.278 40.000 0.00 0.00 0.00 1.82
4574 4996 4.215613 GGCGACAGGTAAACAAGAGAAATT 59.784 41.667 0.00 0.00 0.00 1.82
4575 4997 3.751698 GGCGACAGGTAAACAAGAGAAAT 59.248 43.478 0.00 0.00 0.00 2.17
4576 4998 3.135994 GGCGACAGGTAAACAAGAGAAA 58.864 45.455 0.00 0.00 0.00 2.52
4577 4999 2.762745 GGCGACAGGTAAACAAGAGAA 58.237 47.619 0.00 0.00 0.00 2.87
4579 5001 1.068474 CGGCGACAGGTAAACAAGAG 58.932 55.000 0.00 0.00 0.00 2.85
4580 5002 0.675083 TCGGCGACAGGTAAACAAGA 59.325 50.000 4.99 0.00 0.00 3.02
4581 5003 1.722011 ATCGGCGACAGGTAAACAAG 58.278 50.000 13.76 0.00 0.00 3.16
4582 5004 2.172851 AATCGGCGACAGGTAAACAA 57.827 45.000 13.76 0.00 0.00 2.83
4583 5005 3.530265 ATAATCGGCGACAGGTAAACA 57.470 42.857 13.76 0.00 0.00 2.83
4589 5011 1.663695 ACCAAATAATCGGCGACAGG 58.336 50.000 13.76 10.51 0.00 4.00
4596 5018 2.538132 GCCGTTCGAACCAAATAATCGG 60.538 50.000 22.07 16.63 37.20 4.18
4608 5030 2.631418 CTCAAGTAGAGCCGTTCGAA 57.369 50.000 0.00 0.00 37.59 3.71
4618 5040 6.406961 CCCTAATGTACATGTGCTCAAGTAGA 60.407 42.308 15.25 4.07 30.15 2.59
4619 5041 5.755375 CCCTAATGTACATGTGCTCAAGTAG 59.245 44.000 15.25 7.68 30.15 2.57
4620 5042 5.670485 CCCTAATGTACATGTGCTCAAGTA 58.330 41.667 15.25 0.04 0.00 2.24
4621 5043 4.517285 CCCTAATGTACATGTGCTCAAGT 58.483 43.478 15.25 2.00 0.00 3.16
4622 5044 3.313526 GCCCTAATGTACATGTGCTCAAG 59.686 47.826 15.25 8.79 0.00 3.02
4623 5045 3.278574 GCCCTAATGTACATGTGCTCAA 58.721 45.455 15.25 0.00 0.00 3.02
4624 5046 2.238395 TGCCCTAATGTACATGTGCTCA 59.762 45.455 15.25 8.77 0.00 4.26
4625 5047 2.917933 TGCCCTAATGTACATGTGCTC 58.082 47.619 15.25 3.34 0.00 4.26
4626 5048 3.016736 GTTGCCCTAATGTACATGTGCT 58.983 45.455 15.25 0.00 0.00 4.40
4627 5049 3.016736 AGTTGCCCTAATGTACATGTGC 58.983 45.455 9.63 8.01 0.00 4.57
4635 5057 2.158534 TGTGTTGGAGTTGCCCTAATGT 60.159 45.455 0.00 0.00 34.97 2.71
4637 5059 2.969821 TGTGTTGGAGTTGCCCTAAT 57.030 45.000 0.00 0.00 34.97 1.73
4638 5060 2.513753 CATGTGTTGGAGTTGCCCTAA 58.486 47.619 0.00 0.00 34.97 2.69
4650 5072 2.725723 GACAAAATGCGTCCATGTGTTG 59.274 45.455 0.00 0.00 33.21 3.33
4668 5090 2.144730 CCACACGGATAAAAACGGACA 58.855 47.619 0.00 0.00 0.00 4.02
4669 5091 2.415776 TCCACACGGATAAAAACGGAC 58.584 47.619 0.00 0.00 35.91 4.79
4690 5112 1.604438 CGTCATTTCTGTCCACGTGGA 60.604 52.381 33.23 33.23 43.08 4.02
4691 5113 0.790207 CGTCATTTCTGTCCACGTGG 59.210 55.000 29.26 29.26 0.00 4.94
4692 5114 0.790207 CCGTCATTTCTGTCCACGTG 59.210 55.000 9.08 9.08 0.00 4.49
4693 5115 0.949105 GCCGTCATTTCTGTCCACGT 60.949 55.000 0.00 0.00 0.00 4.49
4694 5116 1.635663 GGCCGTCATTTCTGTCCACG 61.636 60.000 0.00 0.00 0.00 4.94
4695 5117 1.305930 GGGCCGTCATTTCTGTCCAC 61.306 60.000 0.00 0.00 0.00 4.02
4696 5118 1.002624 GGGCCGTCATTTCTGTCCA 60.003 57.895 0.00 0.00 0.00 4.02
4697 5119 0.608035 TTGGGCCGTCATTTCTGTCC 60.608 55.000 0.00 0.00 0.00 4.02
4698 5120 1.133025 CATTGGGCCGTCATTTCTGTC 59.867 52.381 0.00 0.00 0.00 3.51
4699 5121 1.176527 CATTGGGCCGTCATTTCTGT 58.823 50.000 0.00 0.00 0.00 3.41
4700 5122 0.179129 GCATTGGGCCGTCATTTCTG 60.179 55.000 0.00 0.00 36.11 3.02
4701 5123 1.656818 CGCATTGGGCCGTCATTTCT 61.657 55.000 0.00 0.00 40.31 2.52
4702 5124 1.226660 CGCATTGGGCCGTCATTTC 60.227 57.895 0.00 0.00 40.31 2.17
4703 5125 2.884367 CGCATTGGGCCGTCATTT 59.116 55.556 0.00 0.00 40.31 2.32
4704 5126 3.825611 GCGCATTGGGCCGTCATT 61.826 61.111 14.33 0.00 40.31 2.57
4719 5141 3.248630 AAATGTGTTGGCGTCCGCG 62.249 57.895 0.00 0.00 43.06 6.46
4720 5142 1.442017 GAAATGTGTTGGCGTCCGC 60.442 57.895 2.45 2.45 41.06 5.54
4721 5143 0.521291 ATGAAATGTGTTGGCGTCCG 59.479 50.000 0.00 0.00 0.00 4.79
4722 5144 1.981254 CATGAAATGTGTTGGCGTCC 58.019 50.000 0.00 0.00 40.20 4.79
4734 5156 2.834549 AGGAGACAGACGGACATGAAAT 59.165 45.455 0.00 0.00 0.00 2.17
4735 5157 2.248248 AGGAGACAGACGGACATGAAA 58.752 47.619 0.00 0.00 0.00 2.69
4736 5158 1.924731 AGGAGACAGACGGACATGAA 58.075 50.000 0.00 0.00 0.00 2.57
4737 5159 2.801077 TAGGAGACAGACGGACATGA 57.199 50.000 0.00 0.00 0.00 3.07
4738 5160 3.004210 CAGATAGGAGACAGACGGACATG 59.996 52.174 0.00 0.00 0.00 3.21
4739 5161 3.218453 CAGATAGGAGACAGACGGACAT 58.782 50.000 0.00 0.00 0.00 3.06
4740 5162 2.026169 ACAGATAGGAGACAGACGGACA 60.026 50.000 0.00 0.00 0.00 4.02
4741 5163 2.356382 CACAGATAGGAGACAGACGGAC 59.644 54.545 0.00 0.00 0.00 4.79
4742 5164 2.026169 ACACAGATAGGAGACAGACGGA 60.026 50.000 0.00 0.00 0.00 4.69
4743 5165 2.098280 CACACAGATAGGAGACAGACGG 59.902 54.545 0.00 0.00 0.00 4.79
4744 5166 2.098280 CCACACAGATAGGAGACAGACG 59.902 54.545 0.00 0.00 0.00 4.18
4745 5167 3.129638 GTCCACACAGATAGGAGACAGAC 59.870 52.174 0.00 0.00 30.78 3.51
4746 5168 3.357203 GTCCACACAGATAGGAGACAGA 58.643 50.000 0.00 0.00 30.78 3.41
4747 5169 2.098280 CGTCCACACAGATAGGAGACAG 59.902 54.545 0.00 0.00 30.78 3.51
4748 5170 2.092323 CGTCCACACAGATAGGAGACA 58.908 52.381 0.00 0.00 30.78 3.41
4749 5171 1.202313 GCGTCCACACAGATAGGAGAC 60.202 57.143 0.00 0.00 30.78 3.36
4750 5172 1.103803 GCGTCCACACAGATAGGAGA 58.896 55.000 0.00 0.00 30.78 3.71
4751 5173 0.817654 TGCGTCCACACAGATAGGAG 59.182 55.000 0.00 0.00 30.78 3.69
4752 5174 1.262417 TTGCGTCCACACAGATAGGA 58.738 50.000 0.00 0.00 0.00 2.94
4753 5175 1.732259 GTTTGCGTCCACACAGATAGG 59.268 52.381 0.00 0.00 0.00 2.57
4754 5176 1.732259 GGTTTGCGTCCACACAGATAG 59.268 52.381 0.00 0.00 0.00 2.08
4755 5177 1.609580 GGGTTTGCGTCCACACAGATA 60.610 52.381 0.00 0.00 0.00 1.98
4756 5178 0.889186 GGGTTTGCGTCCACACAGAT 60.889 55.000 0.00 0.00 0.00 2.90
4757 5179 1.525077 GGGTTTGCGTCCACACAGA 60.525 57.895 0.00 0.00 0.00 3.41
4758 5180 1.525995 AGGGTTTGCGTCCACACAG 60.526 57.895 0.00 0.00 0.00 3.66
4759 5181 1.821759 CAGGGTTTGCGTCCACACA 60.822 57.895 0.00 0.00 0.00 3.72
4760 5182 3.030652 CAGGGTTTGCGTCCACAC 58.969 61.111 0.00 0.00 0.00 3.82
4761 5183 2.904866 GCAGGGTTTGCGTCCACA 60.905 61.111 0.00 0.00 44.09 4.17
4769 5191 2.682836 CGTTAATTTGGGCAGGGTTTG 58.317 47.619 0.00 0.00 0.00 2.93
4770 5192 1.001520 GCGTTAATTTGGGCAGGGTTT 59.998 47.619 0.00 0.00 0.00 3.27
4771 5193 0.606096 GCGTTAATTTGGGCAGGGTT 59.394 50.000 0.00 0.00 0.00 4.11
4772 5194 1.591504 CGCGTTAATTTGGGCAGGGT 61.592 55.000 0.00 0.00 0.00 4.34
4773 5195 1.138671 CGCGTTAATTTGGGCAGGG 59.861 57.895 0.00 0.00 0.00 4.45
4774 5196 1.516169 GCGCGTTAATTTGGGCAGG 60.516 57.895 8.43 0.00 42.89 4.85
4775 5197 0.798009 CAGCGCGTTAATTTGGGCAG 60.798 55.000 8.43 5.26 45.46 4.85
4776 5198 1.211449 CAGCGCGTTAATTTGGGCA 59.789 52.632 8.43 0.00 45.46 5.36
4777 5199 2.158330 GCAGCGCGTTAATTTGGGC 61.158 57.895 8.43 0.00 43.61 5.36
4778 5200 4.071374 GCAGCGCGTTAATTTGGG 57.929 55.556 8.43 0.00 0.00 4.12
4806 5228 2.184579 GTAGCCAGAGCGGACACC 59.815 66.667 0.00 0.00 46.67 4.16
4807 5229 2.184579 GGTAGCCAGAGCGGACAC 59.815 66.667 0.00 0.00 46.67 3.67
4808 5230 3.075005 GGGTAGCCAGAGCGGACA 61.075 66.667 5.96 0.00 46.67 4.02
4809 5231 2.760385 AGGGTAGCCAGAGCGGAC 60.760 66.667 14.62 0.00 46.67 4.79
4810 5232 2.759973 CAGGGTAGCCAGAGCGGA 60.760 66.667 14.62 0.00 46.67 5.54
4811 5233 3.077556 ACAGGGTAGCCAGAGCGG 61.078 66.667 14.62 0.00 46.67 5.52
4812 5234 2.185350 CACAGGGTAGCCAGAGCG 59.815 66.667 14.62 0.00 46.67 5.03
4813 5235 1.078848 CACACAGGGTAGCCAGAGC 60.079 63.158 14.62 0.00 40.32 4.09
4814 5236 1.194781 ACCACACAGGGTAGCCAGAG 61.195 60.000 14.62 6.48 43.89 3.35
4815 5237 1.152118 ACCACACAGGGTAGCCAGA 60.152 57.895 14.62 0.00 43.89 3.86
4816 5238 1.194781 AGACCACACAGGGTAGCCAG 61.195 60.000 14.62 7.92 42.53 4.85
4817 5239 0.766674 AAGACCACACAGGGTAGCCA 60.767 55.000 14.62 0.00 42.53 4.75
4818 5240 0.400594 AAAGACCACACAGGGTAGCC 59.599 55.000 1.60 1.60 42.53 3.93
4819 5241 2.271944 AAAAGACCACACAGGGTAGC 57.728 50.000 0.00 0.00 42.53 3.58
4836 5258 1.000827 CCCCGCGCATGCATATAAAAA 60.001 47.619 19.57 0.00 42.97 1.94
4837 5259 0.595588 CCCCGCGCATGCATATAAAA 59.404 50.000 19.57 0.00 42.97 1.52
4838 5260 1.240641 CCCCCGCGCATGCATATAAA 61.241 55.000 19.57 0.00 42.97 1.40
4839 5261 1.673993 CCCCCGCGCATGCATATAA 60.674 57.895 19.57 0.00 42.97 0.98
4840 5262 2.046411 CCCCCGCGCATGCATATA 60.046 61.111 19.57 0.00 42.97 0.86
4841 5263 4.269523 ACCCCCGCGCATGCATAT 62.270 61.111 19.57 0.00 42.97 1.78
4852 5274 4.676951 ATGTTGTGGCCACCCCCG 62.677 66.667 32.62 0.00 0.00 5.73
4853 5275 2.679996 GATGTTGTGGCCACCCCC 60.680 66.667 32.62 19.81 0.00 5.40
4854 5276 2.679996 GGATGTTGTGGCCACCCC 60.680 66.667 32.62 22.32 0.00 4.95
4855 5277 2.117206 TGGATGTTGTGGCCACCC 59.883 61.111 32.62 24.84 0.00 4.61
4856 5278 3.365535 GTGGATGTTGTGGCCACC 58.634 61.111 32.62 18.79 44.86 4.61
4858 5280 0.478072 AAGAGTGGATGTTGTGGCCA 59.522 50.000 0.00 0.00 0.00 5.36
4859 5281 1.168714 GAAGAGTGGATGTTGTGGCC 58.831 55.000 0.00 0.00 0.00 5.36
4860 5282 2.079925 GAGAAGAGTGGATGTTGTGGC 58.920 52.381 0.00 0.00 0.00 5.01
4861 5283 2.616510 GGGAGAAGAGTGGATGTTGTGG 60.617 54.545 0.00 0.00 0.00 4.17
4862 5284 2.304180 AGGGAGAAGAGTGGATGTTGTG 59.696 50.000 0.00 0.00 0.00 3.33
4863 5285 2.569404 GAGGGAGAAGAGTGGATGTTGT 59.431 50.000 0.00 0.00 0.00 3.32
4864 5286 2.093235 GGAGGGAGAAGAGTGGATGTTG 60.093 54.545 0.00 0.00 0.00 3.33
4865 5287 2.192263 GGAGGGAGAAGAGTGGATGTT 58.808 52.381 0.00 0.00 0.00 2.71
4866 5288 1.623834 GGGAGGGAGAAGAGTGGATGT 60.624 57.143 0.00 0.00 0.00 3.06
4867 5289 1.127343 GGGAGGGAGAAGAGTGGATG 58.873 60.000 0.00 0.00 0.00 3.51
4868 5290 1.022903 AGGGAGGGAGAAGAGTGGAT 58.977 55.000 0.00 0.00 0.00 3.41
4869 5291 0.336737 GAGGGAGGGAGAAGAGTGGA 59.663 60.000 0.00 0.00 0.00 4.02
4870 5292 0.338120 AGAGGGAGGGAGAAGAGTGG 59.662 60.000 0.00 0.00 0.00 4.00
4871 5293 1.272985 ACAGAGGGAGGGAGAAGAGTG 60.273 57.143 0.00 0.00 0.00 3.51
4872 5294 1.006639 GACAGAGGGAGGGAGAAGAGT 59.993 57.143 0.00 0.00 0.00 3.24
4873 5295 1.687996 GGACAGAGGGAGGGAGAAGAG 60.688 61.905 0.00 0.00 0.00 2.85
4874 5296 0.336737 GGACAGAGGGAGGGAGAAGA 59.663 60.000 0.00 0.00 0.00 2.87
4875 5297 0.689412 GGGACAGAGGGAGGGAGAAG 60.689 65.000 0.00 0.00 0.00 2.85
4876 5298 1.392534 GGGACAGAGGGAGGGAGAA 59.607 63.158 0.00 0.00 0.00 2.87
4877 5299 2.637640 GGGGACAGAGGGAGGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
4878 5300 2.041405 GGGGACAGAGGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
4879 5301 2.540910 AGGGGACAGAGGGAGGGA 60.541 66.667 0.00 0.00 0.00 4.20
4880 5302 2.366167 CAGGGGACAGAGGGAGGG 60.366 72.222 0.00 0.00 0.00 4.30
4881 5303 1.687493 GTCAGGGGACAGAGGGAGG 60.687 68.421 0.00 0.00 43.73 4.30
4882 5304 4.042251 GTCAGGGGACAGAGGGAG 57.958 66.667 0.00 0.00 43.73 4.30
4890 5312 2.582052 TGATTGTGTTTGTCAGGGGAC 58.418 47.619 0.00 0.00 44.57 4.46
4891 5313 2.955660 GTTGATTGTGTTTGTCAGGGGA 59.044 45.455 0.00 0.00 0.00 4.81
4892 5314 2.958355 AGTTGATTGTGTTTGTCAGGGG 59.042 45.455 0.00 0.00 0.00 4.79
4893 5315 3.885297 AGAGTTGATTGTGTTTGTCAGGG 59.115 43.478 0.00 0.00 0.00 4.45
4894 5316 5.334414 GCTAGAGTTGATTGTGTTTGTCAGG 60.334 44.000 0.00 0.00 0.00 3.86
4895 5317 5.334414 GGCTAGAGTTGATTGTGTTTGTCAG 60.334 44.000 0.00 0.00 0.00 3.51
4896 5318 4.515191 GGCTAGAGTTGATTGTGTTTGTCA 59.485 41.667 0.00 0.00 0.00 3.58
4897 5319 4.515191 TGGCTAGAGTTGATTGTGTTTGTC 59.485 41.667 0.00 0.00 0.00 3.18
4898 5320 4.460263 TGGCTAGAGTTGATTGTGTTTGT 58.540 39.130 0.00 0.00 0.00 2.83
4899 5321 5.633830 ATGGCTAGAGTTGATTGTGTTTG 57.366 39.130 0.00 0.00 0.00 2.93
4900 5322 5.536161 ACAATGGCTAGAGTTGATTGTGTTT 59.464 36.000 0.00 0.00 36.22 2.83
4901 5323 5.072741 ACAATGGCTAGAGTTGATTGTGTT 58.927 37.500 0.00 0.00 36.22 3.32
4902 5324 4.655963 ACAATGGCTAGAGTTGATTGTGT 58.344 39.130 0.00 0.00 36.22 3.72
4903 5325 4.201753 CGACAATGGCTAGAGTTGATTGTG 60.202 45.833 0.00 0.00 37.37 3.33
4904 5326 3.935203 CGACAATGGCTAGAGTTGATTGT 59.065 43.478 0.00 0.00 39.39 2.71
4905 5327 3.242543 GCGACAATGGCTAGAGTTGATTG 60.243 47.826 0.00 0.00 0.00 2.67
4906 5328 2.939103 GCGACAATGGCTAGAGTTGATT 59.061 45.455 0.00 0.00 0.00 2.57
4907 5329 2.555199 GCGACAATGGCTAGAGTTGAT 58.445 47.619 0.00 0.00 0.00 2.57
4908 5330 1.405526 GGCGACAATGGCTAGAGTTGA 60.406 52.381 0.00 0.00 0.00 3.18
4909 5331 1.009829 GGCGACAATGGCTAGAGTTG 58.990 55.000 0.00 0.00 0.00 3.16
4910 5332 0.460284 CGGCGACAATGGCTAGAGTT 60.460 55.000 0.00 0.00 0.00 3.01
4911 5333 1.141881 CGGCGACAATGGCTAGAGT 59.858 57.895 0.00 0.00 0.00 3.24
4912 5334 2.240500 GCGGCGACAATGGCTAGAG 61.241 63.158 12.98 0.00 0.00 2.43
4913 5335 2.202878 GCGGCGACAATGGCTAGA 60.203 61.111 12.98 0.00 0.00 2.43
4914 5336 3.272334 GGCGGCGACAATGGCTAG 61.272 66.667 12.98 0.00 0.00 3.42
4915 5337 4.849310 GGGCGGCGACAATGGCTA 62.849 66.667 17.61 0.00 0.00 3.93
4920 5342 4.424711 ATGGTGGGCGGCGACAAT 62.425 61.111 24.63 17.04 0.00 2.71
4935 5357 0.378257 GCATGTACTTCCACGGCATG 59.622 55.000 0.00 0.00 39.68 4.06
4936 5358 0.748005 GGCATGTACTTCCACGGCAT 60.748 55.000 0.00 0.00 0.00 4.40
4937 5359 1.376683 GGCATGTACTTCCACGGCA 60.377 57.895 0.00 0.00 0.00 5.69
4938 5360 2.112815 GGGCATGTACTTCCACGGC 61.113 63.158 0.00 0.00 0.00 5.68
4939 5361 1.451387 GGGGCATGTACTTCCACGG 60.451 63.158 0.00 0.00 0.00 4.94
4940 5362 1.813753 CGGGGCATGTACTTCCACG 60.814 63.158 8.42 8.42 40.63 4.94
4941 5363 0.462047 CTCGGGGCATGTACTTCCAC 60.462 60.000 0.00 0.00 0.00 4.02
4942 5364 1.904771 CTCGGGGCATGTACTTCCA 59.095 57.895 0.00 0.00 0.00 3.53
4943 5365 1.523938 GCTCGGGGCATGTACTTCC 60.524 63.158 0.00 0.00 41.35 3.46
4944 5366 1.883084 CGCTCGGGGCATGTACTTC 60.883 63.158 0.00 0.00 41.91 3.01
4945 5367 2.186903 CGCTCGGGGCATGTACTT 59.813 61.111 0.00 0.00 41.91 2.24
4946 5368 4.530857 GCGCTCGGGGCATGTACT 62.531 66.667 0.00 0.00 41.23 2.73
4947 5369 4.830765 TGCGCTCGGGGCATGTAC 62.831 66.667 9.73 0.00 46.09 2.90
4954 5376 2.658679 TTATGGTCATGCGCTCGGGG 62.659 60.000 9.73 0.00 0.00 5.73
4955 5377 1.224069 CTTATGGTCATGCGCTCGGG 61.224 60.000 9.73 0.00 0.00 5.14
4956 5378 1.224069 CCTTATGGTCATGCGCTCGG 61.224 60.000 9.73 0.00 0.00 4.63
4957 5379 0.530650 ACCTTATGGTCATGCGCTCG 60.531 55.000 9.73 0.00 44.78 5.03
4958 5380 0.940126 CACCTTATGGTCATGCGCTC 59.060 55.000 9.73 0.00 46.60 5.03
4959 5381 0.464373 CCACCTTATGGTCATGCGCT 60.464 55.000 9.73 0.00 46.60 5.92
4960 5382 2.024918 CCACCTTATGGTCATGCGC 58.975 57.895 0.00 0.00 46.60 6.09
4968 5390 0.695803 AGGAGGAGCCCACCTTATGG 60.696 60.000 4.70 0.00 41.79 2.74
4969 5391 2.936823 AGGAGGAGCCCACCTTATG 58.063 57.895 4.70 0.00 41.79 1.90
4973 5395 2.612115 CCAAGGAGGAGCCCACCT 60.612 66.667 4.70 4.70 46.33 4.00
4974 5396 3.732849 CCCAAGGAGGAGCCCACC 61.733 72.222 0.37 0.37 41.22 4.61
4975 5397 3.732849 CCCCAAGGAGGAGCCCAC 61.733 72.222 0.00 0.00 41.22 4.61
4979 5401 4.120755 CTGCCCCCAAGGAGGAGC 62.121 72.222 0.00 0.00 41.22 4.70
4980 5402 4.120755 GCTGCCCCCAAGGAGGAG 62.121 72.222 0.00 0.00 41.22 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.