AutoCloner

Multiple sequence alignment - TraesCS6A01G095300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G095300	chr6A	100.000	4871	0	0	1	4871	61881920	61877050	0.000000e+00	8996.0
1	TraesCS6A01G095300	chr6D	94.071	3761	131	44	1176	4871	53560246	53563979	0.000000e+00	5626.0
2	TraesCS6A01G095300	chr6D	98.724	392	5	0	790	1181	53559442	53559833	0.000000e+00	697.0
3	TraesCS6A01G095300	chr6B	97.190	3132	82	4	1162	4288	118192372	118189242	0.000000e+00	5291.0
4	TraesCS6A01G095300	chr6B	92.986	556	16	4	4316	4871	118188896	118188364	0.000000e+00	789.0
5	TraesCS6A01G095300	chr6B	97.281	331	7	2	760	1088	118192966	118192636	1.180000e-155	560.0
6	TraesCS6A01G095300	chr3B	93.882	425	26	0	341	765	222205069	222205493	4.110000e-180	641.0
7	TraesCS6A01G095300	chr3B	92.411	224	13	2	1	221	222204505	222204727	2.830000e-82	316.0
8	TraesCS6A01G095300	chr4D	94.062	421	24	1	341	760	509680487	509680067	5.320000e-179	638.0
9	TraesCS6A01G095300	chr4D	91.961	311	23	2	1	310	509681073	509680764	7.490000e-118	435.0
10	TraesCS6A01G095300	chr4A	93.795	419	25	1	341	759	614196474	614196891	3.200000e-176	628.0
11	TraesCS6A01G095300	chr3A	93.556	419	26	1	341	759	73611648	73612065	1.490000e-174	623.0
12	TraesCS6A01G095300	chr3A	93.333	60	4	0	255	314	73611315	73611374	6.720000e-14	89.8
13	TraesCS6A01G095300	chr1D	90.024	421	41	1	341	761	440685901	440686320	1.190000e-150	544.0
14	TraesCS6A01G095300	chr1D	89.786	421	42	1	341	761	440665387	440665806	5.550000e-149	538.0
15	TraesCS6A01G095300	chr1D	87.179	312	39	1	1	312	440664806	440665116	2.160000e-93	353.0
16	TraesCS6A01G095300	chr1D	87.179	312	39	1	1	312	440685320	440685630	2.160000e-93	353.0
17	TraesCS6A01G095300	chr1D	79.612	309	57	6	1	307	346349952	346350256	2.950000e-52	217.0
18	TraesCS6A01G095300	chr7B	89.499	419	43	1	341	759	744602088	744602505	3.340000e-146	529.0
19	TraesCS6A01G095300	chr5B	88.278	418	48	1	344	761	259561314	259560898	2.620000e-137	499.0
20	TraesCS6A01G095300	chr5B	86.014	286	39	1	1	286	259561898	259561614	6.130000e-79	305.0
21	TraesCS6A01G095300	chr2B	87.799	418	50	1	341	758	701915343	701914927	5.670000e-134	488.0
22	TraesCS6A01G095300	chr2B	85.761	309	42	2	3	310	701915927	701915620	4.700000e-85	326.0
23	TraesCS6A01G095300	chr3D	79.870	308	59	3	1	307	552236978	552237283	6.350000e-54	222.0
24	TraesCS6A01G095300	chr2D	78.896	308	62	3	1	307	390737184	390736879	6.390000e-49	206.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G095300	chr6A	61877050	61881920	4870	True	8996.000000	8996	100.0000	1	4871	1	chr6A.!!$R1	4870
1	TraesCS6A01G095300	chr6D	53559442	53563979	4537	False	3161.500000	5626	96.3975	790	4871	2	chr6D.!!$F1	4081
2	TraesCS6A01G095300	chr6B	118188364	118192966	4602	True	2213.333333	5291	95.8190	760	4871	3	chr6B.!!$R1	4111
3	TraesCS6A01G095300	chr3B	222204505	222205493	988	False	478.500000	641	93.1465	1	765	2	chr3B.!!$F1	764
4	TraesCS6A01G095300	chr4D	509680067	509681073	1006	True	536.500000	638	93.0115	1	760	2	chr4D.!!$R1	759
5	TraesCS6A01G095300	chr3A	73611315	73612065	750	False	356.400000	623	93.4445	255	759	2	chr3A.!!$F1	504
6	TraesCS6A01G095300	chr1D	440685320	440686320	1000	False	448.500000	544	88.6015	1	761	2	chr1D.!!$F3	760
7	TraesCS6A01G095300	chr1D	440664806	440665806	1000	False	445.500000	538	88.4825	1	761	2	chr1D.!!$F2	760
8	TraesCS6A01G095300	chr5B	259560898	259561898	1000	True	402.000000	499	87.1460	1	761	2	chr5B.!!$R1	760
9	TraesCS6A01G095300	chr2B	701914927	701915927	1000	True	407.000000	488	86.7800	3	758	2	chr2B.!!$R1	755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
691	942	0.036875	CCCTGGGTTTCTGGTGACTC	59.963	60.000	3.97	33.14	3.36	F
754	1005	1.251251	CCCTCCAGTTCCTTGCAAAG	58.749	55.000	0.00	45.69	2.77	F
1924	2785	1.380302	GTGGATGAGGCAAGGGTGT	59.620	57.895	0.00	0.00	4.16	F
2610	3471	2.031944	GTGCAAAGAAGGAAGGTTCGAC	60.032	50.000	0.00	0.00	4.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1605	2466	1.375396	CATTTCGTCGAGCACCCCA	60.375	57.895	0.00	0.00	0.00	4.96	R
2700	3561	1.404391	GCTGAAGATGTCTTGCCATGG	59.596	52.381	7.63	7.63	36.11	3.66	R
3227	4088	0.330604	ATGTGCTTGGTCTGCCTCAT	59.669	50.000	0.00	0.00	35.27	2.90	R
4589	5843	0.107459	GGGCAGAGGAAGATGGACAC	60.107	60.000	0.00	0.00	0.00	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	75	0.454196	GTTCGTGTGTTTTGGTGGCT	59.546	50.000	0.00	0.00	0.00	4.75
94	95	6.091713	GTGGCTAGTGCTACGAAAAATTCTAA	59.908	38.462	0.00	0.00	40.66	2.10
107	108	7.132213	CGAAAAATTCTAACTGTTGAGAGCAA	58.868	34.615	2.69	0.00	0.00	3.91
109	110	9.468532	GAAAAATTCTAACTGTTGAGAGCAATT	57.531	29.630	2.69	0.04	36.22	2.32
127	128	4.084745	GCAATTTGAAGCACAGACACATTG	60.085	41.667	0.00	0.00	35.88	2.82
221	225	2.559698	TGCAAAGATGTTCCGGAGAA	57.440	45.000	3.34	0.00	0.00	2.87
253	257	5.165961	AGTGGCTCAACATTAAGCTTCTA	57.834	39.130	0.00	0.00	38.58	2.10
308	312	4.687901	TTGTGTGACTCCAGATTTGAGA	57.312	40.909	0.00	0.00	33.95	3.27
347	598	6.778834	TTAATGTTGATGTAGGTACCTCGA	57.221	37.500	20.32	6.46	0.00	4.04
449	700	1.227943	AGCTTCGTGGCTTTGAGCA	60.228	52.632	2.04	0.00	44.75	4.26
598	849	7.976135	AGTATTCATCATGTAAAGAGGCATC	57.024	36.000	0.00	0.00	0.00	3.91
609	860	4.439253	AAAGAGGCATCCTAATGTACCC	57.561	45.455	0.00	0.00	35.18	3.69
646	897	1.985473	AAATGCTTGCACACTGGAGA	58.015	45.000	0.00	0.00	0.00	3.71
691	942	0.036875	CCCTGGGTTTCTGGTGACTC	59.963	60.000	3.97	0.00	33.14	3.36
747	998	5.333566	TTGAATAAAACCCTCCAGTTCCT	57.666	39.130	0.00	0.00	0.00	3.36
754	1005	1.251251	CCCTCCAGTTCCTTGCAAAG	58.749	55.000	0.00	0.00	45.69	2.77
788	1040	5.068198	GTGGCAATTGTAGATTGGTGATCAT	59.932	40.000	7.40	0.00	37.22	2.45
792	1044	6.694411	GCAATTGTAGATTGGTGATCATGAAC	59.306	38.462	7.40	0.00	37.22	3.18
1107	1360	4.779733	GACCTCTCCTCCCCGGCA	62.780	72.222	0.00	0.00	0.00	5.69
1466	2327	1.828331	GACGTCTTCACCCGCAACAC	61.828	60.000	8.70	0.00	0.00	3.32
1869	2730	4.675404	CCTGACCAGGTGACGTTC	57.325	61.111	0.00	0.00	43.61	3.95
1924	2785	1.380302	GTGGATGAGGCAAGGGTGT	59.620	57.895	0.00	0.00	0.00	4.16
2139	3000	4.282449	TCGTTTGATGTAAGGAGAGTGGAA	59.718	41.667	0.00	0.00	0.00	3.53
2256	3117	2.105993	CAGGATCCTTGATGAGATGGCA	59.894	50.000	13.00	0.00	0.00	4.92
2286	3147	2.114616	TGTGCCCCAAATTTGTTCACT	58.885	42.857	23.14	0.00	0.00	3.41
2482	3343	6.098124	TGAAATGTGGAATGAAGGAAGTTTGT	59.902	34.615	0.00	0.00	0.00	2.83
2610	3471	2.031944	GTGCAAAGAAGGAAGGTTCGAC	60.032	50.000	0.00	0.00	0.00	4.20
2700	3561	5.705902	ACCTTTATTCACGGTTATTGCAAC	58.294	37.500	0.00	0.00	0.00	4.17
2760	3621	7.288621	AGAGACATGGAAAAGAAAGGTTTCAAT	59.711	33.333	5.30	0.00	39.61	2.57
2926	3787	4.747540	TGTGAACAAGGAATGATGAACG	57.252	40.909	0.00	0.00	0.00	3.95
3175	4036	7.765307	TGAAATAGCACTTGAAATGAGAATCC	58.235	34.615	0.00	0.00	0.00	3.01
3177	4038	4.313020	AGCACTTGAAATGAGAATCCCT	57.687	40.909	0.00	0.00	0.00	4.20
3199	4060	7.574750	TCCCTATCCAAAGTTTCCCATATAAGA	59.425	37.037	0.00	0.00	0.00	2.10
3220	4081	2.315781	GATCATCGTGGGGCTCTGCA	62.316	60.000	0.00	0.00	0.00	4.41
3221	4082	2.321263	ATCATCGTGGGGCTCTGCAG	62.321	60.000	7.63	7.63	0.00	4.41
3227	4088	2.431683	GGGGCTCTGCAGTGTTCA	59.568	61.111	14.67	0.00	0.00	3.18
3243	4104	0.401356	TTCATGAGGCAGACCAAGCA	59.599	50.000	0.00	0.00	39.06	3.91
3532	4394	8.596271	TTCTCGTTATGTGTTTACTTCAATCA	57.404	30.769	0.00	0.00	0.00	2.57
3536	4398	8.655970	TCGTTATGTGTTTACTTCAATCATCTG	58.344	33.333	0.00	0.00	0.00	2.90
3551	4417	9.878667	TTCAATCATCTGTTTATTTGATGCAAT	57.121	25.926	0.00	0.00	37.91	3.56
3979	4873	7.921786	TTAGGTTGTATTGATTTCTCACCAG	57.078	36.000	0.00	0.00	0.00	4.00
4108	5007	0.597568	ACCCATTTGCATCACACACG	59.402	50.000	0.00	0.00	0.00	4.49
4125	5024	2.362120	GCCTTGCCTGCCATCACT	60.362	61.111	0.00	0.00	0.00	3.41
4155	5055	0.179150	CTAGGTCTGTCTCTGTGCGC	60.179	60.000	0.00	0.00	0.00	6.09
4175	5077	4.140599	CCGCAGCCTCTCTCGCTT	62.141	66.667	0.00	0.00	33.17	4.68
4218	5120	4.373116	GACGGCTGCAACGGAGGA	62.373	66.667	14.01	0.00	35.23	3.71
4285	5190	3.814005	TCTCTTTGTATTACCCCTCGC	57.186	47.619	0.00	0.00	0.00	5.03
4288	5193	0.249676	TTTGTATTACCCCTCGCGCA	59.750	50.000	8.75	0.00	0.00	6.09
4291	5196	1.759299	TATTACCCCTCGCGCAGGT	60.759	57.895	19.93	17.93	41.51	4.00
4292	5197	1.741327	TATTACCCCTCGCGCAGGTC	61.741	60.000	19.93	0.00	41.51	3.85
4297	5202	4.363990	CCTCGCGCAGGTCACTGT	62.364	66.667	8.75	0.00	46.62	3.55
4298	5203	2.356313	CTCGCGCAGGTCACTGTT	60.356	61.111	8.75	0.00	46.62	3.16
4299	5204	2.661537	TCGCGCAGGTCACTGTTG	60.662	61.111	8.75	0.00	46.62	3.33
4300	5205	3.716006	CGCGCAGGTCACTGTTGG	61.716	66.667	8.75	0.00	46.62	3.77
4301	5206	3.357079	GCGCAGGTCACTGTTGGG	61.357	66.667	0.30	0.00	46.62	4.12
4302	5207	2.425592	CGCAGGTCACTGTTGGGA	59.574	61.111	0.00	0.00	46.62	4.37
4303	5208	1.227823	CGCAGGTCACTGTTGGGAA	60.228	57.895	0.00	0.00	46.62	3.97
4304	5209	0.817634	CGCAGGTCACTGTTGGGAAA	60.818	55.000	0.00	0.00	46.62	3.13
4305	5210	0.954452	GCAGGTCACTGTTGGGAAAG	59.046	55.000	0.00	0.00	46.62	2.62
4306	5211	1.609208	CAGGTCACTGTTGGGAAAGG	58.391	55.000	0.00	0.00	39.92	3.11
4307	5212	1.142870	CAGGTCACTGTTGGGAAAGGA	59.857	52.381	0.00	0.00	39.92	3.36
4308	5213	1.850345	AGGTCACTGTTGGGAAAGGAA	59.150	47.619	0.00	0.00	0.00	3.36
4542	5796	4.131088	GACGTCCTCCACTCCCGC	62.131	72.222	3.51	0.00	0.00	6.13
4563	5817	4.680237	CCTCGGCAAGCGTGTCCA	62.680	66.667	12.00	0.00	0.00	4.02
4589	5843	2.124983	CTGGTGCCGTCCTCATGG	60.125	66.667	0.00	0.00	0.00	3.66
4837	6097	3.986134	AGCTCCATCTCAATATTCCCCTT	59.014	43.478	0.00	0.00	0.00	3.95
4838	6098	4.077822	GCTCCATCTCAATATTCCCCTTG	58.922	47.826	0.00	0.00	0.00	3.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	7.209471	AGTCTAGACTAACACTGTTTCTGAG	57.791	40.000	24.04	0.00	40.43	3.35
20	21	4.020662	CCTTGAGCTTCCAAAGTCTAGACT	60.021	45.833	20.00	20.00	44.94	3.24
74	75	8.492748	CAACAGTTAGAATTTTTCGTAGCACTA	58.507	33.333	0.00	0.00	34.02	2.74
84	85	9.822185	AAATTGCTCTCAACAGTTAGAATTTTT	57.178	25.926	0.00	0.00	34.60	1.94
94	95	3.633525	TGCTTCAAATTGCTCTCAACAGT	59.366	39.130	0.00	0.00	34.60	3.55
107	108	3.319972	AGCAATGTGTCTGTGCTTCAAAT	59.680	39.130	0.00	0.00	46.25	2.32
109	110	2.300433	AGCAATGTGTCTGTGCTTCAA	58.700	42.857	0.00	0.00	46.25	2.69
127	128	2.505557	GCAGCGTGCCAATTGAGC	60.506	61.111	7.12	9.39	37.42	4.26
155	156	6.880529	TGATACAAGTCTTCATCTGCATCAAA	59.119	34.615	0.00	0.00	0.00	2.69
214	218	3.075005	TCCCTCGCCTTTCTCCGG	61.075	66.667	0.00	0.00	0.00	5.14
215	219	2.352032	ACTCCCTCGCCTTTCTCCG	61.352	63.158	0.00	0.00	0.00	4.63
221	225	3.394836	GAGCCACTCCCTCGCCTT	61.395	66.667	0.00	0.00	0.00	4.35
253	257	2.355513	CCAAGTTGCTGTATGGAGCTCT	60.356	50.000	14.64	0.00	39.90	4.09
266	270	2.191128	ATGTCCTGAGACCAAGTTGC	57.809	50.000	0.00	0.00	42.81	4.17
336	529	0.260816	ACCAGGCATCGAGGTACCTA	59.739	55.000	16.29	0.00	32.92	3.08
449	700	5.070446	TGACTGTCAGTCTCCATTTGTACTT	59.930	40.000	28.67	0.00	45.27	2.24
478	729	1.064803	CGAGTTCCAGAGATCGACCAG	59.935	57.143	0.00	0.00	37.35	4.00
598	849	0.544697	AAGTGGGCGGGTACATTAGG	59.455	55.000	0.00	0.00	0.00	2.69
646	897	6.305272	AGAGTACATCCAACAATCTGTCAT	57.695	37.500	0.00	0.00	0.00	3.06
747	998	2.613133	GCCACATGCTTTTTCTTTGCAA	59.387	40.909	0.00	0.00	40.24	4.08
754	1005	5.229423	TCTACAATTGCCACATGCTTTTTC	58.771	37.500	5.05	0.00	42.00	2.29
773	1024	5.297527	TGCATGTTCATGATCACCAATCTAC	59.702	40.000	15.74	0.00	35.24	2.59
774	1025	5.438833	TGCATGTTCATGATCACCAATCTA	58.561	37.500	15.74	0.00	35.24	1.98
775	1026	4.274978	TGCATGTTCATGATCACCAATCT	58.725	39.130	15.74	0.00	35.24	2.40
776	1027	4.642445	TGCATGTTCATGATCACCAATC	57.358	40.909	15.74	0.00	34.72	2.67
779	1031	3.566742	GCTATGCATGTTCATGATCACCA	59.433	43.478	10.16	9.39	0.00	4.17
1077	1330	1.749638	GAGGTCGAGGAAGAGGCGA	60.750	63.158	0.00	0.00	0.00	5.54
1269	2130	1.605971	GGGAGAAGTCGAGTGGGACC	61.606	65.000	0.00	0.00	37.66	4.46
1275	2136	0.393267	CGGAGAGGGAGAAGTCGAGT	60.393	60.000	0.00	0.00	0.00	4.18
1443	2304	3.677648	CGGGTGAAGACGTCGGGT	61.678	66.667	10.46	0.00	0.00	5.28
1605	2466	1.375396	CATTTCGTCGAGCACCCCA	60.375	57.895	0.00	0.00	0.00	4.96
1695	2556	2.583441	CCGTTCCACCAGCCTCTCA	61.583	63.158	0.00	0.00	0.00	3.27
1839	2700	4.704103	TCAGGCCTCGGCAGACCT	62.704	66.667	0.00	0.00	44.11	3.85
1869	2730	3.250323	CCGCTGAGCATCACGTCG	61.250	66.667	4.88	0.00	42.56	5.12
1924	2785	4.018506	ACCACATCTCATAATGTCCACCAA	60.019	41.667	0.00	0.00	37.78	3.67
2139	3000	3.136443	TCACACCACTCCTCACAAAATCT	59.864	43.478	0.00	0.00	0.00	2.40
2286	3147	6.127479	ACAAACTCTCCAGCAAAACATTGTAA	60.127	34.615	0.00	0.00	0.00	2.41
2482	3343	2.551270	ACTACCCAATCTGCCAAGAGA	58.449	47.619	0.00	0.00	35.37	3.10
2610	3471	5.675970	TCAAGTAATCGTTTCTTTGCTTCG	58.324	37.500	0.00	0.00	0.00	3.79
2700	3561	1.404391	GCTGAAGATGTCTTGCCATGG	59.596	52.381	7.63	7.63	36.11	3.66
2760	3621	3.146066	GTTGTATGACCTTGTGCTTGGA	58.854	45.455	0.00	0.00	0.00	3.53
2920	3781	2.297033	ACAAAGGCATTGCTTCGTTCAT	59.703	40.909	8.82	0.00	43.13	2.57
2926	3787	5.314923	TCATCTAACAAAGGCATTGCTTC	57.685	39.130	8.82	0.00	43.13	3.86
2979	3840	5.186996	TGATCAACAAGCCAAAAGAAGTC	57.813	39.130	0.00	0.00	0.00	3.01
3155	4016	5.441718	AGGGATTCTCATTTCAAGTGCTA	57.558	39.130	0.00	0.00	0.00	3.49
3175	4036	9.289782	CTTCTTATATGGGAAACTTTGGATAGG	57.710	37.037	0.00	0.00	0.00	2.57
3199	4060	0.467384	CAGAGCCCCACGATGATCTT	59.533	55.000	0.00	0.00	0.00	2.40
3220	4081	1.059098	TGGTCTGCCTCATGAACACT	58.941	50.000	0.00	0.00	35.27	3.55
3221	4082	1.808945	CTTGGTCTGCCTCATGAACAC	59.191	52.381	0.00	0.00	35.27	3.32
3227	4088	0.330604	ATGTGCTTGGTCTGCCTCAT	59.669	50.000	0.00	0.00	35.27	2.90
3243	4104	9.372369	GCTATAAACAACTTGAGAAGACTATGT	57.628	33.333	0.00	0.00	0.00	2.29
3532	4394	9.529325	CAGAATCATTGCATCAAATAAACAGAT	57.471	29.630	0.00	0.00	0.00	2.90
3536	4398	8.749499	GCTACAGAATCATTGCATCAAATAAAC	58.251	33.333	0.00	0.00	0.00	2.01
3539	4401	6.661669	CGCTACAGAATCATTGCATCAAATA	58.338	36.000	0.00	0.00	0.00	1.40
3540	4402	5.516996	CGCTACAGAATCATTGCATCAAAT	58.483	37.500	0.00	0.00	0.00	2.32
3543	4409	2.288729	GCGCTACAGAATCATTGCATCA	59.711	45.455	0.00	0.00	0.00	3.07
3551	4417	5.531287	TCATAGTCTAAGCGCTACAGAATCA	59.469	40.000	20.86	11.20	0.00	2.57
3732	4613	4.186926	GAGCACTGTCATCTCTGCATTTA	58.813	43.478	0.00	0.00	31.71	1.40
3995	4889	1.268184	CGCGTACGCTATGGTAGAACA	60.268	52.381	34.69	0.00	39.32	3.18
4072	4966	2.369532	TGGGTTTCCCTATATACACCGC	59.630	50.000	6.38	0.00	45.70	5.68
4108	5007	1.538687	AAAGTGATGGCAGGCAAGGC	61.539	55.000	0.00	0.00	0.00	4.35
4155	5055	4.504916	CGAGAGAGGCTGCGGTGG	62.505	72.222	0.00	0.00	0.00	4.61
4175	5077	3.695606	GAGCACCACGGAGAGGCA	61.696	66.667	0.00	0.00	43.95	4.75
4218	5120	2.043625	CACACCCAGCAACAGCAAT	58.956	52.632	0.00	0.00	0.00	3.56
4285	5190	0.817634	TTTCCCAACAGTGACCTGCG	60.818	55.000	0.00	0.00	42.81	5.18
4288	5193	1.518367	TCCTTTCCCAACAGTGACCT	58.482	50.000	0.00	0.00	0.00	3.85
4291	5196	3.662759	AAGTTCCTTTCCCAACAGTGA	57.337	42.857	0.00	0.00	0.00	3.41
4292	5197	3.447229	ACAAAGTTCCTTTCCCAACAGTG	59.553	43.478	0.00	0.00	30.60	3.66
4293	5198	3.447229	CACAAAGTTCCTTTCCCAACAGT	59.553	43.478	0.00	0.00	30.60	3.55
4294	5199	3.447229	ACACAAAGTTCCTTTCCCAACAG	59.553	43.478	0.00	0.00	30.60	3.16
4295	5200	3.436243	ACACAAAGTTCCTTTCCCAACA	58.564	40.909	0.00	0.00	30.60	3.33
4296	5201	5.585820	TTACACAAAGTTCCTTTCCCAAC	57.414	39.130	0.00	0.00	30.60	3.77
4297	5202	7.064229	AGTATTACACAAAGTTCCTTTCCCAA	58.936	34.615	0.00	0.00	30.60	4.12
4298	5203	6.607019	AGTATTACACAAAGTTCCTTTCCCA	58.393	36.000	0.00	0.00	30.60	4.37
4299	5204	6.150641	GGAGTATTACACAAAGTTCCTTTCCC	59.849	42.308	0.00	0.00	30.60	3.97
4300	5205	6.713450	TGGAGTATTACACAAAGTTCCTTTCC	59.287	38.462	0.00	0.00	30.60	3.13
4301	5206	7.739498	TGGAGTATTACACAAAGTTCCTTTC	57.261	36.000	0.00	0.00	30.60	2.62
4302	5207	8.528044	TTTGGAGTATTACACAAAGTTCCTTT	57.472	30.769	10.69	0.00	33.58	3.11
4303	5208	8.706322	ATTTGGAGTATTACACAAAGTTCCTT	57.294	30.769	16.49	3.17	36.41	3.36
4304	5209	8.706322	AATTTGGAGTATTACACAAAGTTCCT	57.294	30.769	16.49	3.66	36.41	3.36
4305	5210	9.191995	CAAATTTGGAGTATTACACAAAGTTCC	57.808	33.333	18.32	7.50	38.53	3.62
4589	5843	0.107459	GGGCAGAGGAAGATGGACAC	60.107	60.000	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.