Multiple sequence alignment - TraesCS6A01G094800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G094800 chr6A 100.000 5795 0 0 1 5795 61435874 61430080 0.000000e+00 10702.0
1 TraesCS6A01G094800 chr6D 94.240 4965 204 45 879 5794 53664945 53669876 0.000000e+00 7509.0
2 TraesCS6A01G094800 chr6D 90.879 899 59 11 1 883 53664003 53664894 0.000000e+00 1184.0
3 TraesCS6A01G094800 chr6B 96.063 2972 78 12 2051 5012 117853111 117850169 0.000000e+00 4804.0
4 TraesCS6A01G094800 chr6B 95.854 1182 47 2 879 2059 117855396 117854216 0.000000e+00 1910.0
5 TraesCS6A01G094800 chr6B 96.451 789 19 5 5014 5794 117850138 117849351 0.000000e+00 1293.0
6 TraesCS6A01G094800 chr6B 77.548 726 122 26 1 704 117856983 117856277 3.250000e-107 399.0
7 TraesCS6A01G094800 chr5A 85.714 70 9 1 129 198 546766860 546766928 8.050000e-09 73.1
8 TraesCS6A01G094800 chr3D 83.544 79 12 1 533 610 423416964 423416886 8.050000e-09 73.1
9 TraesCS6A01G094800 chr3D 83.607 61 7 3 531 588 113308834 113308894 3.000000e-03 54.7
10 TraesCS6A01G094800 chr5B 88.333 60 6 1 138 197 522411568 522411510 2.900000e-08 71.3
11 TraesCS6A01G094800 chr7D 81.429 70 12 1 507 575 22744018 22744087 8.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G094800 chr6A 61430080 61435874 5794 True 10702.0 10702 100.0000 1 5795 1 chr6A.!!$R1 5794
1 TraesCS6A01G094800 chr6D 53664003 53669876 5873 False 4346.5 7509 92.5595 1 5794 2 chr6D.!!$F1 5793
2 TraesCS6A01G094800 chr6B 117849351 117856983 7632 True 2101.5 4804 91.4790 1 5794 4 chr6B.!!$R1 5793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1678 0.111446 TTTCAAGGATGGACGGGCAA 59.889 50.000 0.00 0.0 0.00 4.52 F
2211 4066 1.898938 TCGCATCGTAGTGGTTTACG 58.101 50.000 0.00 0.0 45.79 3.18 F
2552 4407 1.806542 AGGTGCACAGCTTATGTTTCG 59.193 47.619 20.43 0.0 41.41 3.46 F
3365 5223 2.497273 TCATTGCTCGTCATCTCTTGGA 59.503 45.455 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 4135 0.739813 CGCTTCCTTACCACTTCCCG 60.740 60.000 0.0 0.0 0.0 5.14 R
3676 5536 0.827089 CCAATGTGTGTCCCCTGCAA 60.827 55.000 0.0 0.0 0.0 4.08 R
4088 5948 3.146066 GGTTACTGCCATTGTGACTTCA 58.854 45.455 0.0 0.0 0.0 3.02 R
4978 6864 0.250727 GCAAGACCCCAGCACTGTTA 60.251 55.000 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 173 9.847224 AATTAATAGGTCAGTTGAATATTCGGT 57.153 29.630 10.80 0.00 0.00 4.69
176 178 6.281405 AGGTCAGTTGAATATTCGGTATCAC 58.719 40.000 10.80 3.47 0.00 3.06
362 376 8.748412 ACATTGTACATTTTTATGCACACCTAT 58.252 29.630 0.00 0.00 28.38 2.57
366 380 9.632807 TGTACATTTTTATGCACACCTATTTTC 57.367 29.630 0.00 0.00 0.00 2.29
374 391 9.674068 TTTATGCACACCTATTTTCTATACACA 57.326 29.630 0.00 0.00 0.00 3.72
518 551 3.771577 AAAAAGACGAGACAGGGACAT 57.228 42.857 0.00 0.00 0.00 3.06
520 553 1.924731 AAGACGAGACAGGGACATGA 58.075 50.000 0.00 0.00 0.00 3.07
529 562 2.033448 GGGACATGACGTGGGCAA 59.967 61.111 0.00 0.00 0.00 4.52
530 563 2.332654 GGGACATGACGTGGGCAAC 61.333 63.158 0.00 0.00 0.00 4.17
570 603 2.288948 GCTTCAATGCCAACACCATGAA 60.289 45.455 0.00 0.00 0.00 2.57
610 643 1.503542 GACATGAAAGCGGCACTGG 59.496 57.895 0.00 0.00 0.00 4.00
620 653 1.452145 GCGGCACTGGTTTTCTGGAA 61.452 55.000 0.00 0.00 0.00 3.53
625 658 2.285083 CACTGGTTTTCTGGAACGACA 58.715 47.619 0.00 0.00 0.00 4.35
633 666 3.586100 TTCTGGAACGACATTGATCGA 57.414 42.857 13.15 0.00 45.13 3.59
671 705 1.442769 GCTTTGTGCAGGAAGATCGA 58.557 50.000 12.01 0.00 42.31 3.59
698 732 3.136992 ACGGAAGAGGTTTTAAAGTGGGA 59.863 43.478 0.00 0.00 0.00 4.37
737 780 2.670251 TTCCGAACGCCCGCAAAT 60.670 55.556 0.00 0.00 0.00 2.32
768 1033 0.881118 GTCTGCTTGCGGGAATTCAA 59.119 50.000 7.93 0.00 0.00 2.69
775 1040 1.025812 TGCGGGAATTCAAACAACGT 58.974 45.000 7.93 0.00 0.00 3.99
827 1102 5.496556 TCTTTTTGACGGGATGATATGTGT 58.503 37.500 0.00 0.00 0.00 3.72
919 1659 3.394836 GCAGCTTCCCTCCGTCCT 61.395 66.667 0.00 0.00 0.00 3.85
938 1678 0.111446 TTTCAAGGATGGACGGGCAA 59.889 50.000 0.00 0.00 0.00 4.52
1349 2089 2.758737 GTCCTCCCCGTCGACCAT 60.759 66.667 10.58 0.00 0.00 3.55
1457 2197 2.432510 CCCTCTGAGATTAAGCGAGGTT 59.567 50.000 6.17 0.00 39.64 3.50
1517 2257 7.539436 TGACTCAGTACTCAATAATCACTCAC 58.461 38.462 0.00 0.00 0.00 3.51
1522 2262 8.753133 TCAGTACTCAATAATCACTCACAGATT 58.247 33.333 0.00 0.00 39.01 2.40
1593 2333 5.739752 TCAAATGACAGTGAAGTGTTCAG 57.260 39.130 0.00 0.00 41.01 3.02
1596 2336 2.826428 TGACAGTGAAGTGTTCAGAGC 58.174 47.619 0.00 0.00 41.01 4.09
1791 2532 3.254903 GTGGTTGGGGCTTTACACTTTAG 59.745 47.826 0.00 0.00 0.00 1.85
1838 2579 6.044046 ACATGTCTCACTTGTTTACACGTTA 58.956 36.000 0.00 0.00 33.38 3.18
1905 2646 6.758886 GCACTCAGTACTTCATACTTAGCAAT 59.241 38.462 0.00 0.00 41.71 3.56
1963 2704 8.777865 TGAAGAATCACGATCTTAATCAAACT 57.222 30.769 0.00 0.00 37.26 2.66
1973 2714 7.335422 ACGATCTTAATCAAACTGCATCTCTTT 59.665 33.333 0.00 0.00 31.76 2.52
2028 2769 9.255304 GTGGAAAGTGCAATAAAAGTTTTCATA 57.745 29.630 3.60 0.00 29.23 2.15
2211 4066 1.898938 TCGCATCGTAGTGGTTTACG 58.101 50.000 0.00 0.00 45.79 3.18
2261 4116 4.500499 AGAAGCATTAGAAGTGGCTGAT 57.500 40.909 0.00 0.00 36.58 2.90
2271 4126 3.817647 AGAAGTGGCTGATTTTGTCTGAC 59.182 43.478 0.00 0.00 34.56 3.51
2280 4135 3.002246 TGATTTTGTCTGACGAGCAACAC 59.998 43.478 2.98 0.00 0.00 3.32
2308 4163 2.026636 TGGTAAGGAAGCGCTTTATGGT 60.027 45.455 25.84 10.68 0.00 3.55
2324 4179 6.422400 GCTTTATGGTGTAGTCTTATGCTCTC 59.578 42.308 0.00 0.00 0.00 3.20
2420 4275 9.469097 AATCTACAGATCACTAACACTAAGAGT 57.531 33.333 0.00 0.00 32.75 3.24
2493 4348 2.741759 TGAGCTTGTGCGATCTACAA 57.258 45.000 10.69 10.69 45.42 2.41
2552 4407 1.806542 AGGTGCACAGCTTATGTTTCG 59.193 47.619 20.43 0.00 41.41 3.46
2623 4478 6.653320 TGGCGAGTCTCATGTTTAAAATAACT 59.347 34.615 0.00 0.00 0.00 2.24
2921 4776 4.233789 CTCTAGAAAGCGATCATACTGCC 58.766 47.826 0.00 0.00 0.00 4.85
2992 4847 7.288810 AGAAAATTGGTTCTAATCACTTGCA 57.711 32.000 0.00 0.00 36.06 4.08
3031 4889 5.729229 TGGAAGAGGGTCCTTGTATTGATAA 59.271 40.000 0.00 0.00 38.62 1.75
3032 4890 6.389869 TGGAAGAGGGTCCTTGTATTGATAAT 59.610 38.462 0.00 0.00 38.62 1.28
3033 4891 7.570982 TGGAAGAGGGTCCTTGTATTGATAATA 59.429 37.037 0.00 0.00 38.62 0.98
3107 4965 4.206375 TGAATAATGGTGGCGATGTGAAT 58.794 39.130 0.00 0.00 0.00 2.57
3208 5066 3.419828 CAGTTGCTGCGGTGACAA 58.580 55.556 0.00 0.00 0.00 3.18
3365 5223 2.497273 TCATTGCTCGTCATCTCTTGGA 59.503 45.455 0.00 0.00 0.00 3.53
3621 5480 5.609423 ACTCTCTGAATGGATATTCTGCAC 58.391 41.667 0.00 0.00 42.56 4.57
3676 5536 4.106179 TGACATGGGGCATGGTTATCTATT 59.894 41.667 0.00 0.00 45.16 1.73
4021 5881 8.906867 TGTTTACATACCTACCATACTGTCTAC 58.093 37.037 0.00 0.00 0.00 2.59
4088 5948 3.769739 TCCTGCAAGTCTGTTATGTGT 57.230 42.857 0.00 0.00 0.00 3.72
4117 5977 3.068024 ACAATGGCAGTAACCTGTGTTTG 59.932 43.478 0.00 0.00 41.02 2.93
4228 6088 1.307097 CTGAATGCCTTAGCTCAGCC 58.693 55.000 0.00 0.00 35.33 4.85
4372 6232 4.492494 TTGTATCATGCATCTCTGGTGT 57.508 40.909 0.00 0.00 0.00 4.16
4416 6276 2.158842 GCACTGTTCCTGCCTATCTCAT 60.159 50.000 0.00 0.00 0.00 2.90
4448 6308 2.280186 GGCGAGCTGGTTATCCCG 60.280 66.667 0.00 0.00 35.15 5.14
4493 6353 1.417890 CTCCCTCCTGTTGACACAAGT 59.582 52.381 0.00 0.00 30.36 3.16
4689 6555 7.779326 TCCTTGAAATGCATTTATGGAGTGATA 59.221 33.333 24.15 7.29 0.00 2.15
4723 6589 9.967346 CATTATATTTCTTCGACTCTTCTGGTA 57.033 33.333 0.00 0.00 0.00 3.25
4727 6593 9.720769 ATATTTCTTCGACTCTTCTGGTAAAAA 57.279 29.630 0.00 0.00 0.00 1.94
4728 6594 8.622948 ATTTCTTCGACTCTTCTGGTAAAAAT 57.377 30.769 0.00 0.00 0.00 1.82
4754 6620 5.359194 TTTCTCCAACTCTTATAGCCTGG 57.641 43.478 0.00 0.00 34.24 4.45
4756 6622 3.706594 TCTCCAACTCTTATAGCCTGGTG 59.293 47.826 0.00 0.00 34.47 4.17
4774 6640 2.028748 GGTGCAAATGAAGCATCCTTGT 60.029 45.455 0.00 0.00 44.79 3.16
4775 6641 3.193267 GGTGCAAATGAAGCATCCTTGTA 59.807 43.478 0.00 0.00 44.79 2.41
4776 6642 4.321899 GGTGCAAATGAAGCATCCTTGTAA 60.322 41.667 0.00 0.00 44.79 2.41
4789 6655 9.632638 AAGCATCCTTGTAATAACATAACTGAT 57.367 29.630 0.00 0.00 34.97 2.90
4808 6674 5.028549 TGATTCCTAGGAAACTGCAGATC 57.971 43.478 27.65 17.50 43.88 2.75
4841 6717 5.183713 TCTGCTGATGTCTTAAACCCAAATG 59.816 40.000 0.00 0.00 0.00 2.32
4939 6823 5.389520 AGATATAGTCTGGAGCAACTAGCA 58.610 41.667 0.00 0.00 40.18 3.49
4978 6864 8.919145 TGAATGGTTTTGTTAGTCAATAAAGGT 58.081 29.630 0.00 0.00 35.84 3.50
5000 6886 1.001641 AGTGCTGGGGTCTTGCATC 60.002 57.895 0.00 0.00 39.00 3.91
5113 7028 8.469200 CATGGATGTGTACATATGTTCCTTTTT 58.531 33.333 14.77 0.00 36.57 1.94
5349 7270 6.035005 CCTGTGATAAATGAAGTGACTGTACG 59.965 42.308 0.00 0.00 0.00 3.67
5547 7468 0.107066 CACAGTAGGGCCATGCATGA 60.107 55.000 28.31 4.41 0.00 3.07
5587 7515 6.839134 ACCTACCTGTGAGACATGTCATATTA 59.161 38.462 27.02 8.80 29.87 0.98
5633 7562 5.415701 AGACTACACTTAATGTTGCATTGGG 59.584 40.000 4.78 0.98 43.19 4.12
5634 7563 5.076873 ACTACACTTAATGTTGCATTGGGT 58.923 37.500 4.78 0.00 43.19 4.51
5636 7565 3.258123 ACACTTAATGTTGCATTGGGTCC 59.742 43.478 4.78 0.00 38.98 4.46
5638 7567 3.511146 ACTTAATGTTGCATTGGGTCCTG 59.489 43.478 4.78 0.00 0.00 3.86
5680 7609 3.131577 TGATGATGAATGCAAAAGGAGGC 59.868 43.478 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 188 6.937436 AGTTGTTAACCGAAAATCTGAACT 57.063 33.333 2.48 0.00 0.00 3.01
570 603 0.387929 TTCAGAGCGAACGTGACCTT 59.612 50.000 0.00 0.00 0.00 3.50
610 643 4.151689 TCGATCAATGTCGTTCCAGAAAAC 59.848 41.667 0.00 0.00 42.07 2.43
620 653 5.985530 ACATATTCATGTCGATCAATGTCGT 59.014 36.000 0.00 0.00 41.75 4.34
625 658 7.496920 AGTTGTCACATATTCATGTCGATCAAT 59.503 33.333 0.00 0.00 43.73 2.57
633 666 6.384224 CAAAGCAGTTGTCACATATTCATGT 58.616 36.000 0.00 0.00 37.90 3.21
661 694 1.043116 TCCGTGCCATCGATCTTCCT 61.043 55.000 0.00 0.00 0.00 3.36
671 705 2.871096 TAAAACCTCTTCCGTGCCAT 57.129 45.000 0.00 0.00 0.00 4.40
698 732 3.777910 GGCCCGTACACATCCGGT 61.778 66.667 0.00 0.00 42.67 5.28
737 780 0.036732 AAGCAGACGCAAATCAGGGA 59.963 50.000 0.00 0.00 42.27 4.20
768 1033 3.365832 CGCATATCCTACGTACGTTGTT 58.634 45.455 27.92 15.63 0.00 2.83
775 1040 5.443185 AAACTAAGCGCATATCCTACGTA 57.557 39.130 11.47 0.00 0.00 3.57
805 1077 5.586243 AGACACATATCATCCCGTCAAAAAG 59.414 40.000 0.00 0.00 0.00 2.27
827 1102 9.607988 ATTTCGTCCATACACATGTAAATTAGA 57.392 29.630 0.00 0.00 33.76 2.10
919 1659 0.111446 TTGCCCGTCCATCCTTGAAA 59.889 50.000 0.00 0.00 0.00 2.69
1190 1930 4.467107 AGGAGGAGGAGGTCGGCC 62.467 72.222 0.00 0.00 0.00 6.13
1457 2197 5.014202 GGAGGCAATTGGGAAACTAACTAA 58.986 41.667 7.72 0.00 31.71 2.24
1506 2246 7.390027 GGCTATGGTAATCTGTGAGTGATTAT 58.610 38.462 0.00 0.00 38.26 1.28
1517 2257 5.871396 ATATACGGGGCTATGGTAATCTG 57.129 43.478 0.00 0.00 0.00 2.90
1522 2262 6.725369 TCACTAAAATATACGGGGCTATGGTA 59.275 38.462 0.00 0.00 0.00 3.25
1571 2311 5.427378 TCTGAACACTTCACTGTCATTTGA 58.573 37.500 0.00 0.00 35.46 2.69
1593 2333 6.601217 AGATTCAAAATGAGGAAACCTAGCTC 59.399 38.462 0.00 0.00 31.76 4.09
1596 2336 6.886459 TGGAGATTCAAAATGAGGAAACCTAG 59.114 38.462 0.00 0.00 31.76 3.02
1649 2389 3.703556 TCTGCCATGAAAAAGAACCAACA 59.296 39.130 0.00 0.00 0.00 3.33
1780 2521 7.440255 GAGTAAAGACTGCACCTAAAGTGTAAA 59.560 37.037 0.00 0.00 41.83 2.01
1791 2532 3.996480 ACTGAAGAGTAAAGACTGCACC 58.004 45.455 0.00 0.00 35.45 5.01
1799 2540 8.085296 AGTGAGACATGTAACTGAAGAGTAAAG 58.915 37.037 0.00 0.00 0.00 1.85
1905 2646 3.684908 CACACTATCATGGGTTTGGACA 58.315 45.455 0.00 0.00 0.00 4.02
1973 2714 6.899393 ATTAACATCTTTCCAGTTTCTGCA 57.101 33.333 0.00 0.00 0.00 4.41
2064 3918 2.851824 GTGAAAAAGAACAGGTTGTGCG 59.148 45.455 0.00 0.00 28.94 5.34
2211 4066 8.352942 AGAACATTTACATTCCAACAGAACTTC 58.647 33.333 0.00 0.00 37.29 3.01
2251 4106 2.549754 CGTCAGACAAAATCAGCCACTT 59.450 45.455 0.41 0.00 0.00 3.16
2261 4116 1.326245 CGTGTTGCTCGTCAGACAAAA 59.674 47.619 0.41 0.00 0.00 2.44
2271 4126 2.317609 CCACTTCCCGTGTTGCTCG 61.318 63.158 0.00 0.00 42.20 5.03
2280 4135 0.739813 CGCTTCCTTACCACTTCCCG 60.740 60.000 0.00 0.00 0.00 5.14
2308 4163 2.950309 GGGACGAGAGCATAAGACTACA 59.050 50.000 0.00 0.00 0.00 2.74
2493 4348 5.179452 ACAAACTATTAGCACCCATGAGT 57.821 39.130 0.00 0.00 0.00 3.41
2552 4407 8.451908 AGCTTTTGGACCATTATAATACTGAC 57.548 34.615 0.00 0.00 0.00 3.51
2623 4478 2.435069 TCCACAACGTCCCTGAAAAGTA 59.565 45.455 0.00 0.00 0.00 2.24
2753 4608 2.811317 GTTCTCTGCAGGCGACCG 60.811 66.667 15.13 0.00 0.00 4.79
2992 4847 4.464947 CTCTTCCAAAAGAACTGGAGGTT 58.535 43.478 1.50 0.00 43.79 3.50
3107 4965 5.594725 ACAGTCACTTGTAGACTTCTCAGAA 59.405 40.000 0.00 0.00 43.47 3.02
3208 5066 3.782523 TCCAGCTTTTCCACTATCTCCAT 59.217 43.478 0.00 0.00 0.00 3.41
3365 5223 6.053632 TCTGAATATTGCGATGGGTATGAT 57.946 37.500 0.00 0.00 0.00 2.45
3621 5480 6.992063 ATCAACTTATGAACACCAAGCTAG 57.008 37.500 0.00 0.00 42.54 3.42
3676 5536 0.827089 CCAATGTGTGTCCCCTGCAA 60.827 55.000 0.00 0.00 0.00 4.08
3755 5615 8.579863 CCTTTTGGTTTTCAAATCTCTCACTAT 58.420 33.333 0.00 0.00 43.95 2.12
4047 5907 7.417116 GCAGGAAATACAATCATCTGTCCAAAT 60.417 37.037 0.00 0.00 0.00 2.32
4088 5948 3.146066 GGTTACTGCCATTGTGACTTCA 58.854 45.455 0.00 0.00 0.00 3.02
4117 5977 4.640647 ACTGTCCTGAAAACAGAAGGAAAC 59.359 41.667 10.04 0.00 45.64 2.78
4372 6232 8.978472 GTGCTTGGTATATATGATTAGGGTCTA 58.022 37.037 0.00 0.00 0.00 2.59
4448 6308 4.153117 CCAGAAATCTTGCAGTGTACAGAC 59.847 45.833 0.00 0.00 0.00 3.51
4610 6472 1.247567 CAAGCAGGTTAGTGGGTTGG 58.752 55.000 0.00 0.00 36.63 3.77
4689 6555 8.613060 AGTCGAAGAAATATAATGCATCACAT 57.387 30.769 0.00 0.00 39.69 3.21
4728 6594 8.816894 CCAGGCTATAAGAGTTGGAGAAATATA 58.183 37.037 0.00 0.00 35.29 0.86
4737 6603 2.092968 TGCACCAGGCTATAAGAGTTGG 60.093 50.000 0.00 0.00 45.15 3.77
4753 6619 2.028748 ACAAGGATGCTTCATTTGCACC 60.029 45.455 0.00 0.00 43.59 5.01
4754 6620 3.308438 ACAAGGATGCTTCATTTGCAC 57.692 42.857 0.00 0.00 43.59 4.57
4756 6622 7.035004 TGTTATTACAAGGATGCTTCATTTGC 58.965 34.615 0.00 0.00 0.00 3.68
4776 6642 9.838339 CAGTTTCCTAGGAATCAGTTATGTTAT 57.162 33.333 27.01 6.59 33.79 1.89
4785 6651 4.478206 TCTGCAGTTTCCTAGGAATCAG 57.522 45.455 27.01 25.13 33.79 2.90
4789 6655 4.908601 TTGATCTGCAGTTTCCTAGGAA 57.091 40.909 20.72 20.72 0.00 3.36
4830 6706 4.696479 AACATGGTTGCATTTGGGTTTA 57.304 36.364 0.00 0.00 0.00 2.01
4939 6823 8.449251 ACAAAACCATTCATATTTTTGTGCTT 57.551 26.923 11.15 0.00 45.74 3.91
4978 6864 0.250727 GCAAGACCCCAGCACTGTTA 60.251 55.000 0.00 0.00 0.00 2.41
5000 6886 0.320771 AGCCAAGCACTCTTGTACCG 60.321 55.000 4.60 0.00 46.33 4.02
5349 7270 1.747709 ACAGATCCATGAGCTTGCAC 58.252 50.000 0.00 0.00 0.00 4.57
5547 7468 2.572104 GGTAGGTCATTGTTCACCCTCT 59.428 50.000 0.00 0.00 32.45 3.69
5587 7515 7.037945 AGTCTTTTCCTTCCAGCTAGTTAAGAT 60.038 37.037 0.00 0.00 0.00 2.40
5633 7562 1.673168 GGAGGTGCATTCATCAGGAC 58.327 55.000 0.00 0.00 0.00 3.85
5634 7563 0.548031 GGGAGGTGCATTCATCAGGA 59.452 55.000 0.00 0.00 0.00 3.86
5636 7565 2.022195 CAAGGGAGGTGCATTCATCAG 58.978 52.381 0.00 0.00 0.00 2.90
5638 7567 2.425143 TCAAGGGAGGTGCATTCATC 57.575 50.000 0.00 0.00 0.00 2.92
5745 7674 6.417258 TCCTAAATTCACTCTGATCATTGCA 58.583 36.000 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.