Multiple sequence alignment - TraesCS6A01G093800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G093800 chr6A 100.000 3287 0 0 1 3287 61218125 61221411 0.000000e+00 6071.0
1 TraesCS6A01G093800 chr6A 92.294 1674 101 8 1 1647 61372490 61374162 0.000000e+00 2351.0
2 TraesCS6A01G093800 chr6A 96.000 325 13 0 2961 3285 202136668 202136344 2.450000e-146 529.0
3 TraesCS6A01G093800 chr6A 95.016 321 16 0 2962 3282 40225645 40225965 4.130000e-139 505.0
4 TraesCS6A01G093800 chr6A 92.771 332 24 0 2956 3287 558741947 558742278 6.960000e-132 481.0
5 TraesCS6A01G093800 chr6A 92.308 338 25 1 2948 3284 31887169 31887506 2.500000e-131 479.0
6 TraesCS6A01G093800 chr6A 92.285 337 26 0 2948 3284 204419125 204419461 2.500000e-131 479.0
7 TraesCS6A01G093800 chr6A 100.000 59 0 0 3527 3585 61221651 61221709 3.780000e-20 110.0
8 TraesCS6A01G093800 chr6A 93.243 74 4 1 1575 1648 143366579 143366651 1.360000e-19 108.0
9 TraesCS6A01G093800 chr6A 87.654 81 10 0 1571 1651 467950944 467951024 1.060000e-15 95.3
10 TraesCS6A01G093800 chr5D 95.224 1319 53 8 1650 2963 123101147 123102460 0.000000e+00 2078.0
11 TraesCS6A01G093800 chr5D 94.924 1320 61 5 1648 2963 114443790 114442473 0.000000e+00 2061.0
12 TraesCS6A01G093800 chr5D 86.070 1005 118 21 1 998 177857957 177858946 0.000000e+00 1061.0
13 TraesCS6A01G093800 chr5D 85.581 964 120 18 1 960 414522683 414523631 0.000000e+00 992.0
14 TraesCS6A01G093800 chr5D 91.420 338 29 0 2948 3285 172357340 172357003 7.010000e-127 464.0
15 TraesCS6A01G093800 chr5D 91.124 338 28 1 2948 3285 250209387 250209722 1.170000e-124 457.0
16 TraesCS6A01G093800 chr5D 91.098 337 29 1 2949 3285 418290812 418290477 4.220000e-124 455.0
17 TraesCS6A01G093800 chr5D 91.045 335 30 0 2951 3285 169462163 169462497 1.520000e-123 453.0
18 TraesCS6A01G093800 chr5D 90.964 332 28 2 2954 3285 250578264 250578593 2.540000e-121 446.0
19 TraesCS6A01G093800 chr5D 90.533 338 30 2 2948 3285 377225458 377225793 2.540000e-121 446.0
20 TraesCS6A01G093800 chr5D 91.525 59 5 0 3527 3585 430361377 430361319 8.250000e-12 82.4
21 TraesCS6A01G093800 chr2D 95.011 1323 55 8 1648 2963 54828132 54826814 0.000000e+00 2067.0
22 TraesCS6A01G093800 chr2D 95.260 1308 54 5 1650 2952 370427226 370425922 0.000000e+00 2065.0
23 TraesCS6A01G093800 chr2D 94.705 1322 64 3 1648 2964 491470081 491471401 0.000000e+00 2049.0
24 TraesCS6A01G093800 chr2D 86.093 942 102 25 1 929 258970752 258969827 0.000000e+00 987.0
25 TraesCS6A01G093800 chr3D 95.050 1313 60 5 1642 2952 447091148 447089839 0.000000e+00 2060.0
26 TraesCS6A01G093800 chr3D 94.658 1329 58 8 1650 2969 350740028 350741352 0.000000e+00 2049.0
27 TraesCS6A01G093800 chr3D 92.492 333 24 1 2952 3284 600705266 600704935 3.240000e-130 475.0
28 TraesCS6A01G093800 chr5A 94.773 1320 66 3 1650 2969 546599289 546597973 0.000000e+00 2052.0
29 TraesCS6A01G093800 chr5A 82.062 1377 192 40 1 1352 246439897 246438551 0.000000e+00 1123.0
30 TraesCS6A01G093800 chr5A 85.472 943 119 15 2 938 436493438 436494368 0.000000e+00 966.0
31 TraesCS6A01G093800 chr5A 94.277 332 19 0 2956 3287 499126234 499125903 3.190000e-140 508.0
32 TraesCS6A01G093800 chr5A 92.941 340 24 0 2948 3287 636925781 636926120 2.490000e-136 496.0
33 TraesCS6A01G093800 chr5A 93.220 59 4 0 3527 3585 637772804 637772862 1.770000e-13 87.9
34 TraesCS6A01G093800 chr4A 94.970 1312 61 4 1652 2963 113656354 113657660 0.000000e+00 2052.0
35 TraesCS6A01G093800 chr4A 86.424 906 105 17 1 901 103576251 103577143 0.000000e+00 976.0
36 TraesCS6A01G093800 chr4A 93.220 59 4 0 3527 3585 34113042 34112984 1.770000e-13 87.9
37 TraesCS6A01G093800 chr4A 91.525 59 5 0 3527 3585 11914201 11914143 8.250000e-12 82.4
38 TraesCS6A01G093800 chr3A 84.095 1597 196 24 1 1561 574845222 574846796 0.000000e+00 1489.0
39 TraesCS6A01G093800 chr3A 83.287 1454 189 27 130 1561 574821303 574822724 0.000000e+00 1290.0
40 TraesCS6A01G093800 chr3A 94.915 59 3 0 3527 3585 703998181 703998123 3.810000e-15 93.5
41 TraesCS6A01G093800 chr3A 88.136 59 7 0 3527 3585 18653348 18653406 1.790000e-08 71.3
42 TraesCS6A01G093800 chr2A 81.773 1602 220 48 1 1561 647517767 647516197 0.000000e+00 1275.0
43 TraesCS6A01G093800 chr2A 85.021 948 120 20 1 943 298858868 298857938 0.000000e+00 944.0
44 TraesCS6A01G093800 chr2A 86.292 569 58 6 1009 1561 647500575 647500011 5.120000e-168 601.0
45 TraesCS6A01G093800 chr2A 93.235 340 23 0 2948 3287 551097652 551097991 5.340000e-138 501.0
46 TraesCS6A01G093800 chr2A 93.220 59 4 0 3527 3585 227907267 227907209 1.770000e-13 87.9
47 TraesCS6A01G093800 chr1D 84.310 1058 127 33 7 1051 263016229 263017260 0.000000e+00 998.0
48 TraesCS6A01G093800 chr1D 86.652 884 98 18 7 882 78526058 78526929 0.000000e+00 961.0
49 TraesCS6A01G093800 chr1D 93.548 310 20 0 2976 3285 435925058 435924749 2.520000e-126 462.0
50 TraesCS6A01G093800 chr1D 92.476 319 23 1 2966 3284 113920333 113920650 4.220000e-124 455.0
51 TraesCS6A01G093800 chr1D 90.504 337 32 0 2949 3285 30450104 30450440 2.540000e-121 446.0
52 TraesCS6A01G093800 chr1D 91.304 322 24 4 2965 3284 57509968 57510287 1.530000e-118 436.0
53 TraesCS6A01G093800 chr7A 81.395 946 133 21 637 1561 297952257 297953180 0.000000e+00 732.0
54 TraesCS6A01G093800 chr7A 95.601 341 14 1 2948 3287 280693420 280693080 2.430000e-151 545.0
55 TraesCS6A01G093800 chr7A 95.413 327 15 0 2961 3287 175057319 175057645 4.100000e-144 521.0
56 TraesCS6A01G093800 chr7A 88.000 75 9 0 1577 1651 251900788 251900714 4.930000e-14 89.8
57 TraesCS6A01G093800 chr7A 93.220 59 4 0 3527 3585 91746918 91746976 1.770000e-13 87.9
58 TraesCS6A01G093800 chr7A 93.220 59 4 0 3527 3585 637695228 637695286 1.770000e-13 87.9
59 TraesCS6A01G093800 chr7D 89.031 547 54 6 1038 1582 301579211 301579753 0.000000e+00 673.0
60 TraesCS6A01G093800 chr7D 87.500 384 46 2 1038 1420 301583064 301583446 3.280000e-120 442.0
61 TraesCS6A01G093800 chr1A 95.719 327 14 0 2961 3287 369364377 369364703 8.820000e-146 527.0
62 TraesCS6A01G093800 chr1A 94.659 337 17 1 2951 3287 113697631 113697296 4.100000e-144 521.0
63 TraesCS6A01G093800 chr1A 94.135 341 19 1 2948 3287 493405714 493406054 5.310000e-143 518.0
64 TraesCS6A01G093800 chr1A 93.824 340 21 0 2948 3287 244211694 244211355 2.470000e-141 512.0
65 TraesCS6A01G093800 chr1A 94.304 316 18 0 2972 3287 574913310 574913625 5.380000e-133 484.0
66 TraesCS6A01G093800 chr1A 92.285 337 25 1 2948 3284 259279815 259279480 9.000000e-131 477.0
67 TraesCS6A01G093800 chr1A 91.471 340 29 0 2948 3287 67115878 67115539 5.420000e-128 468.0
68 TraesCS6A01G093800 chr1A 91.420 338 29 0 2948 3285 577599778 577600115 7.010000e-127 464.0
69 TraesCS6A01G093800 chr1A 94.915 59 3 0 3527 3585 250602615 250602557 3.810000e-15 93.5
70 TraesCS6A01G093800 chrUn 91.358 324 26 2 2963 3285 47369899 47369577 3.280000e-120 442.0
71 TraesCS6A01G093800 chrUn 91.358 324 26 2 2963 3285 424780405 424780727 3.280000e-120 442.0
72 TraesCS6A01G093800 chrUn 90.237 338 31 1 2948 3285 458808747 458809082 1.180000e-119 440.0
73 TraesCS6A01G093800 chrUn 90.798 326 30 0 2960 3285 386640430 386640105 1.530000e-118 436.0
74 TraesCS6A01G093800 chrUn 89.908 327 31 2 2959 3285 32988810 32988486 1.540000e-113 420.0
75 TraesCS6A01G093800 chrUn 89.024 328 34 2 2959 3285 32393175 32392849 4.310000e-109 405.0
76 TraesCS6A01G093800 chrUn 88.024 334 37 3 2949 3282 290876150 290876480 3.360000e-105 392.0
77 TraesCS6A01G093800 chrUn 90.000 300 30 0 2985 3284 299213717 299214016 4.340000e-104 388.0
78 TraesCS6A01G093800 chrUn 90.000 300 30 0 2985 3284 336811032 336810733 4.340000e-104 388.0
79 TraesCS6A01G093800 chrUn 88.644 317 35 1 2967 3283 29752311 29752626 5.610000e-103 385.0
80 TraesCS6A01G093800 chrUn 88.088 319 38 0 2967 3285 210906415 210906733 2.610000e-101 379.0
81 TraesCS6A01G093800 chr6D 89.851 335 34 0 2948 3282 324567431 324567765 7.110000e-117 431.0
82 TraesCS6A01G093800 chr6D 90.462 325 31 0 2961 3285 50183495 50183819 2.560000e-116 429.0
83 TraesCS6A01G093800 chr6D 90.735 313 26 2 2972 3284 201144607 201144298 7.160000e-112 414.0
84 TraesCS6A01G093800 chr6D 89.602 327 31 2 2961 3285 354685470 354685145 2.580000e-111 412.0
85 TraesCS6A01G093800 chr6B 94.915 59 3 0 3527 3585 68610054 68609996 3.810000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G093800 chr6A 61218125 61221709 3584 False 3090.5 6071 100.0000 1 3585 2 chr6A.!!$F8 3584
1 TraesCS6A01G093800 chr6A 61372490 61374162 1672 False 2351.0 2351 92.2940 1 1647 1 chr6A.!!$F3 1646
2 TraesCS6A01G093800 chr5D 123101147 123102460 1313 False 2078.0 2078 95.2240 1650 2963 1 chr5D.!!$F1 1313
3 TraesCS6A01G093800 chr5D 114442473 114443790 1317 True 2061.0 2061 94.9240 1648 2963 1 chr5D.!!$R1 1315
4 TraesCS6A01G093800 chr5D 177857957 177858946 989 False 1061.0 1061 86.0700 1 998 1 chr5D.!!$F3 997
5 TraesCS6A01G093800 chr5D 414522683 414523631 948 False 992.0 992 85.5810 1 960 1 chr5D.!!$F7 959
6 TraesCS6A01G093800 chr2D 54826814 54828132 1318 True 2067.0 2067 95.0110 1648 2963 1 chr2D.!!$R1 1315
7 TraesCS6A01G093800 chr2D 370425922 370427226 1304 True 2065.0 2065 95.2600 1650 2952 1 chr2D.!!$R3 1302
8 TraesCS6A01G093800 chr2D 491470081 491471401 1320 False 2049.0 2049 94.7050 1648 2964 1 chr2D.!!$F1 1316
9 TraesCS6A01G093800 chr2D 258969827 258970752 925 True 987.0 987 86.0930 1 929 1 chr2D.!!$R2 928
10 TraesCS6A01G093800 chr3D 447089839 447091148 1309 True 2060.0 2060 95.0500 1642 2952 1 chr3D.!!$R1 1310
11 TraesCS6A01G093800 chr3D 350740028 350741352 1324 False 2049.0 2049 94.6580 1650 2969 1 chr3D.!!$F1 1319
12 TraesCS6A01G093800 chr5A 546597973 546599289 1316 True 2052.0 2052 94.7730 1650 2969 1 chr5A.!!$R3 1319
13 TraesCS6A01G093800 chr5A 246438551 246439897 1346 True 1123.0 1123 82.0620 1 1352 1 chr5A.!!$R1 1351
14 TraesCS6A01G093800 chr5A 436493438 436494368 930 False 966.0 966 85.4720 2 938 1 chr5A.!!$F1 936
15 TraesCS6A01G093800 chr4A 113656354 113657660 1306 False 2052.0 2052 94.9700 1652 2963 1 chr4A.!!$F2 1311
16 TraesCS6A01G093800 chr4A 103576251 103577143 892 False 976.0 976 86.4240 1 901 1 chr4A.!!$F1 900
17 TraesCS6A01G093800 chr3A 574845222 574846796 1574 False 1489.0 1489 84.0950 1 1561 1 chr3A.!!$F3 1560
18 TraesCS6A01G093800 chr3A 574821303 574822724 1421 False 1290.0 1290 83.2870 130 1561 1 chr3A.!!$F2 1431
19 TraesCS6A01G093800 chr2A 647516197 647517767 1570 True 1275.0 1275 81.7730 1 1561 1 chr2A.!!$R4 1560
20 TraesCS6A01G093800 chr2A 298857938 298858868 930 True 944.0 944 85.0210 1 943 1 chr2A.!!$R2 942
21 TraesCS6A01G093800 chr2A 647500011 647500575 564 True 601.0 601 86.2920 1009 1561 1 chr2A.!!$R3 552
22 TraesCS6A01G093800 chr1D 263016229 263017260 1031 False 998.0 998 84.3100 7 1051 1 chr1D.!!$F5 1044
23 TraesCS6A01G093800 chr1D 78526058 78526929 871 False 961.0 961 86.6520 7 882 1 chr1D.!!$F3 875
24 TraesCS6A01G093800 chr7A 297952257 297953180 923 False 732.0 732 81.3950 637 1561 1 chr7A.!!$F3 924
25 TraesCS6A01G093800 chr7D 301579211 301583446 4235 False 557.5 673 88.2655 1038 1582 2 chr7D.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1039 0.034089 AACAGTGCATAGGAAGGGGC 60.034 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2876 6897 1.002087 CCTCTGTAGCCACCGAAAACT 59.998 52.381 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 4.045104 CGATAGAGCGAACAACTAGCAAT 58.955 43.478 0.00 0.00 39.76 3.56
163 167 4.899502 ACGAGTCCATGAAGAAGACAAAT 58.100 39.130 0.00 0.00 32.82 2.32
279 326 0.108520 GCATGATGCACAACCAAGGG 60.109 55.000 13.36 0.00 44.26 3.95
363 428 3.354948 AGTGGAGCTCAATATGCAACA 57.645 42.857 17.19 0.00 0.00 3.33
384 449 6.012658 ACAAGTTGCATATTGACGAAACAT 57.987 33.333 15.97 0.00 0.00 2.71
523 588 6.073276 GGCCAGAAATAACAAACAACAATTCC 60.073 38.462 0.00 0.00 0.00 3.01
554 619 7.806409 TCCCCATATGCATATTATGAATTCG 57.194 36.000 16.71 2.53 29.33 3.34
563 628 8.083462 TGCATATTATGAATTCGGTACTGTTC 57.917 34.615 7.87 0.00 0.00 3.18
615 680 1.170442 TGCAAGATGAGTGCACCATG 58.830 50.000 20.93 12.15 46.76 3.66
838 903 9.970395 AGTTATTTACATATGATGCATGGTTTG 57.030 29.630 10.38 0.26 0.00 2.93
839 904 9.748708 GTTATTTACATATGATGCATGGTTTGT 57.251 29.630 10.38 6.58 0.00 2.83
840 905 9.747293 TTATTTACATATGATGCATGGTTTGTG 57.253 29.630 10.38 0.00 0.00 3.33
841 906 7.401955 TTTACATATGATGCATGGTTTGTGA 57.598 32.000 10.38 0.00 0.00 3.58
842 907 5.509716 ACATATGATGCATGGTTTGTGAG 57.490 39.130 10.38 0.00 0.00 3.51
843 908 5.195185 ACATATGATGCATGGTTTGTGAGA 58.805 37.500 10.38 0.00 0.00 3.27
844 909 5.831525 ACATATGATGCATGGTTTGTGAGAT 59.168 36.000 10.38 0.00 0.00 2.75
845 910 6.999871 ACATATGATGCATGGTTTGTGAGATA 59.000 34.615 10.38 0.00 0.00 1.98
846 911 7.668469 ACATATGATGCATGGTTTGTGAGATAT 59.332 33.333 10.38 0.00 0.00 1.63
847 912 5.761165 TGATGCATGGTTTGTGAGATATG 57.239 39.130 2.46 0.00 0.00 1.78
848 913 5.438833 TGATGCATGGTTTGTGAGATATGA 58.561 37.500 2.46 0.00 0.00 2.15
849 914 6.066032 TGATGCATGGTTTGTGAGATATGAT 58.934 36.000 2.46 0.00 0.00 2.45
850 915 7.225725 TGATGCATGGTTTGTGAGATATGATA 58.774 34.615 2.46 0.00 0.00 2.15
851 916 7.886446 TGATGCATGGTTTGTGAGATATGATAT 59.114 33.333 2.46 0.00 0.00 1.63
852 917 7.443259 TGCATGGTTTGTGAGATATGATATG 57.557 36.000 0.00 0.00 0.00 1.78
853 918 6.072342 TGCATGGTTTGTGAGATATGATATGC 60.072 38.462 0.00 0.00 37.23 3.14
854 919 6.072342 GCATGGTTTGTGAGATATGATATGCA 60.072 38.462 0.00 0.00 36.83 3.96
855 920 7.362660 GCATGGTTTGTGAGATATGATATGCAT 60.363 37.037 3.79 3.79 41.08 3.96
856 921 7.443259 TGGTTTGTGAGATATGATATGCATG 57.557 36.000 10.16 0.00 37.87 4.06
857 922 7.225725 TGGTTTGTGAGATATGATATGCATGA 58.774 34.615 10.16 0.00 37.87 3.07
858 923 7.720515 TGGTTTGTGAGATATGATATGCATGAA 59.279 33.333 10.16 0.00 37.87 2.57
859 924 8.019669 GGTTTGTGAGATATGATATGCATGAAC 58.980 37.037 10.16 1.00 37.87 3.18
860 925 8.562052 GTTTGTGAGATATGATATGCATGAACA 58.438 33.333 10.16 7.09 37.87 3.18
861 926 8.857694 TTGTGAGATATGATATGCATGAACAT 57.142 30.769 10.16 13.65 37.87 2.71
862 927 8.263940 TGTGAGATATGATATGCATGAACATG 57.736 34.615 10.16 10.04 41.60 3.21
863 928 7.335924 TGTGAGATATGATATGCATGAACATGG 59.664 37.037 10.16 0.00 39.16 3.66
864 929 7.551617 GTGAGATATGATATGCATGAACATGGA 59.448 37.037 10.16 13.15 43.22 3.41
865 930 7.769044 TGAGATATGATATGCATGAACATGGAG 59.231 37.037 10.16 0.00 42.35 3.86
866 931 7.054751 AGATATGATATGCATGAACATGGAGG 58.945 38.462 10.16 0.00 42.35 4.30
867 932 3.758425 TGATATGCATGAACATGGAGGG 58.242 45.455 10.16 0.00 42.35 4.30
868 933 3.138839 TGATATGCATGAACATGGAGGGT 59.861 43.478 10.16 4.34 42.35 4.34
869 934 2.537633 ATGCATGAACATGGAGGGTT 57.462 45.000 15.15 0.00 42.35 4.11
870 935 2.307496 TGCATGAACATGGAGGGTTT 57.693 45.000 15.15 0.00 39.16 3.27
871 936 2.607499 TGCATGAACATGGAGGGTTTT 58.393 42.857 15.15 0.00 39.16 2.43
872 937 2.971330 TGCATGAACATGGAGGGTTTTT 59.029 40.909 15.15 0.00 39.16 1.94
873 938 3.006752 TGCATGAACATGGAGGGTTTTTC 59.993 43.478 15.15 0.00 39.16 2.29
874 939 3.259123 GCATGAACATGGAGGGTTTTTCT 59.741 43.478 15.15 0.00 39.16 2.52
875 940 4.462483 GCATGAACATGGAGGGTTTTTCTA 59.538 41.667 15.15 0.00 39.16 2.10
876 941 5.622233 GCATGAACATGGAGGGTTTTTCTAC 60.622 44.000 15.15 0.00 39.16 2.59
877 942 5.055265 TGAACATGGAGGGTTTTTCTACA 57.945 39.130 0.00 0.00 0.00 2.74
878 943 5.450453 TGAACATGGAGGGTTTTTCTACAA 58.550 37.500 0.00 0.00 0.00 2.41
879 944 5.894393 TGAACATGGAGGGTTTTTCTACAAA 59.106 36.000 0.00 0.00 0.00 2.83
880 945 6.553100 TGAACATGGAGGGTTTTTCTACAAAT 59.447 34.615 0.00 0.00 0.00 2.32
881 946 6.590234 ACATGGAGGGTTTTTCTACAAATC 57.410 37.500 0.00 0.00 0.00 2.17
882 947 6.314917 ACATGGAGGGTTTTTCTACAAATCT 58.685 36.000 0.00 0.00 0.00 2.40
883 948 6.209391 ACATGGAGGGTTTTTCTACAAATCTG 59.791 38.462 0.00 0.00 0.00 2.90
884 949 4.522789 TGGAGGGTTTTTCTACAAATCTGC 59.477 41.667 0.00 0.00 0.00 4.26
885 950 4.082190 GGAGGGTTTTTCTACAAATCTGCC 60.082 45.833 0.00 0.00 0.00 4.85
886 951 4.479158 AGGGTTTTTCTACAAATCTGCCA 58.521 39.130 0.00 0.00 0.00 4.92
887 952 4.898861 AGGGTTTTTCTACAAATCTGCCAA 59.101 37.500 0.00 0.00 0.00 4.52
888 953 5.365314 AGGGTTTTTCTACAAATCTGCCAAA 59.635 36.000 0.00 0.00 0.00 3.28
889 954 5.465390 GGGTTTTTCTACAAATCTGCCAAAC 59.535 40.000 0.00 0.00 0.00 2.93
890 955 6.280643 GGTTTTTCTACAAATCTGCCAAACT 58.719 36.000 0.00 0.00 0.00 2.66
891 956 6.420903 GGTTTTTCTACAAATCTGCCAAACTC 59.579 38.462 0.00 0.00 0.00 3.01
892 957 5.705609 TTTCTACAAATCTGCCAAACTCC 57.294 39.130 0.00 0.00 0.00 3.85
893 958 4.640771 TCTACAAATCTGCCAAACTCCT 57.359 40.909 0.00 0.00 0.00 3.69
894 959 4.326826 TCTACAAATCTGCCAAACTCCTG 58.673 43.478 0.00 0.00 0.00 3.86
895 960 2.242043 ACAAATCTGCCAAACTCCTGG 58.758 47.619 0.00 0.00 39.71 4.45
896 961 2.158475 ACAAATCTGCCAAACTCCTGGA 60.158 45.455 0.00 0.00 38.96 3.86
897 962 3.094572 CAAATCTGCCAAACTCCTGGAT 58.905 45.455 0.00 0.00 38.96 3.41
898 963 4.263905 ACAAATCTGCCAAACTCCTGGATA 60.264 41.667 0.00 0.00 38.96 2.59
899 964 4.591321 AATCTGCCAAACTCCTGGATAA 57.409 40.909 0.00 0.00 38.96 1.75
900 965 4.591321 ATCTGCCAAACTCCTGGATAAA 57.409 40.909 0.00 0.00 38.96 1.40
901 966 4.591321 TCTGCCAAACTCCTGGATAAAT 57.409 40.909 0.00 0.00 38.96 1.40
902 967 4.272489 TCTGCCAAACTCCTGGATAAATG 58.728 43.478 0.00 0.00 38.96 2.32
903 968 4.018506 TCTGCCAAACTCCTGGATAAATGA 60.019 41.667 0.00 0.00 38.96 2.57
904 969 4.671831 TGCCAAACTCCTGGATAAATGAA 58.328 39.130 0.00 0.00 38.96 2.57
905 970 5.271598 TGCCAAACTCCTGGATAAATGAAT 58.728 37.500 0.00 0.00 38.96 2.57
906 971 6.430864 TGCCAAACTCCTGGATAAATGAATA 58.569 36.000 0.00 0.00 38.96 1.75
907 972 6.894654 TGCCAAACTCCTGGATAAATGAATAA 59.105 34.615 0.00 0.00 38.96 1.40
908 973 7.398618 TGCCAAACTCCTGGATAAATGAATAAA 59.601 33.333 0.00 0.00 38.96 1.40
909 974 8.424133 GCCAAACTCCTGGATAAATGAATAAAT 58.576 33.333 0.00 0.00 38.96 1.40
913 978 7.875971 ACTCCTGGATAAATGAATAAATTCGC 58.124 34.615 0.00 0.00 39.62 4.70
914 979 7.502226 ACTCCTGGATAAATGAATAAATTCGCA 59.498 33.333 0.00 0.00 39.62 5.10
915 980 7.874940 TCCTGGATAAATGAATAAATTCGCAG 58.125 34.615 0.00 0.00 39.62 5.18
916 981 6.583806 CCTGGATAAATGAATAAATTCGCAGC 59.416 38.462 0.00 0.00 39.62 5.25
917 982 7.036996 TGGATAAATGAATAAATTCGCAGCA 57.963 32.000 0.00 0.00 39.62 4.41
918 983 7.487484 TGGATAAATGAATAAATTCGCAGCAA 58.513 30.769 0.00 0.00 39.62 3.91
919 984 7.648908 TGGATAAATGAATAAATTCGCAGCAAG 59.351 33.333 0.00 0.00 39.62 4.01
920 985 7.115378 GGATAAATGAATAAATTCGCAGCAAGG 59.885 37.037 0.00 0.00 39.62 3.61
921 986 3.781079 TGAATAAATTCGCAGCAAGGG 57.219 42.857 0.00 0.00 39.62 3.95
922 987 3.351740 TGAATAAATTCGCAGCAAGGGA 58.648 40.909 0.00 0.00 39.62 4.20
946 1011 4.642445 AAAACTACACGGGGAAAAACTG 57.358 40.909 0.00 0.00 0.00 3.16
947 1012 2.265589 ACTACACGGGGAAAAACTGG 57.734 50.000 0.00 0.00 0.00 4.00
948 1013 1.491754 ACTACACGGGGAAAAACTGGT 59.508 47.619 0.00 0.00 0.00 4.00
949 1014 2.092267 ACTACACGGGGAAAAACTGGTT 60.092 45.455 0.00 0.00 0.00 3.67
950 1015 1.107945 ACACGGGGAAAAACTGGTTG 58.892 50.000 0.00 0.00 0.00 3.77
951 1016 1.107945 CACGGGGAAAAACTGGTTGT 58.892 50.000 0.00 0.00 0.00 3.32
952 1017 1.107945 ACGGGGAAAAACTGGTTGTG 58.892 50.000 0.00 0.00 0.00 3.33
953 1018 0.249280 CGGGGAAAAACTGGTTGTGC 60.249 55.000 0.00 0.00 0.00 4.57
954 1019 0.105964 GGGGAAAAACTGGTTGTGCC 59.894 55.000 0.00 0.00 37.90 5.01
955 1020 0.827368 GGGAAAAACTGGTTGTGCCA 59.173 50.000 0.63 0.00 46.95 4.92
962 1027 3.205395 TGGTTGTGCCAACAGTGC 58.795 55.556 16.55 3.80 45.94 4.40
963 1028 1.680314 TGGTTGTGCCAACAGTGCA 60.680 52.632 16.55 5.82 45.94 4.57
964 1029 1.042003 TGGTTGTGCCAACAGTGCAT 61.042 50.000 16.55 0.00 45.94 3.96
965 1030 0.958091 GGTTGTGCCAACAGTGCATA 59.042 50.000 16.55 0.00 41.46 3.14
966 1031 1.068333 GGTTGTGCCAACAGTGCATAG 60.068 52.381 16.55 0.00 41.46 2.23
967 1032 1.068333 GTTGTGCCAACAGTGCATAGG 60.068 52.381 11.69 0.00 41.46 2.57
968 1033 0.399833 TGTGCCAACAGTGCATAGGA 59.600 50.000 0.00 0.00 41.46 2.94
969 1034 1.202867 TGTGCCAACAGTGCATAGGAA 60.203 47.619 0.00 0.00 41.46 3.36
970 1035 1.470098 GTGCCAACAGTGCATAGGAAG 59.530 52.381 0.00 0.00 41.46 3.46
971 1036 1.098050 GCCAACAGTGCATAGGAAGG 58.902 55.000 0.00 0.00 0.00 3.46
972 1037 1.755179 CCAACAGTGCATAGGAAGGG 58.245 55.000 0.00 0.00 0.00 3.95
973 1038 1.683011 CCAACAGTGCATAGGAAGGGG 60.683 57.143 0.00 0.00 0.00 4.79
974 1039 0.034089 AACAGTGCATAGGAAGGGGC 60.034 55.000 0.00 0.00 0.00 5.80
975 1040 0.916358 ACAGTGCATAGGAAGGGGCT 60.916 55.000 0.00 0.00 0.00 5.19
976 1041 0.465097 CAGTGCATAGGAAGGGGCTG 60.465 60.000 0.00 0.00 0.00 4.85
977 1042 1.152881 GTGCATAGGAAGGGGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
978 1043 1.307778 TGCATAGGAAGGGGCTGGA 60.308 57.895 0.00 0.00 0.00 3.86
979 1044 1.348008 TGCATAGGAAGGGGCTGGAG 61.348 60.000 0.00 0.00 0.00 3.86
980 1045 2.061790 GCATAGGAAGGGGCTGGAGG 62.062 65.000 0.00 0.00 0.00 4.30
981 1046 1.073397 ATAGGAAGGGGCTGGAGGG 60.073 63.158 0.00 0.00 0.00 4.30
982 1047 2.644628 ATAGGAAGGGGCTGGAGGGG 62.645 65.000 0.00 0.00 0.00 4.79
989 1054 3.342477 GGCTGGAGGGGGCTTCTT 61.342 66.667 0.00 0.00 0.00 2.52
990 1055 2.001269 GGCTGGAGGGGGCTTCTTA 61.001 63.158 0.00 0.00 0.00 2.10
991 1056 1.224870 GCTGGAGGGGGCTTCTTAC 59.775 63.158 0.00 0.00 0.00 2.34
992 1057 1.915983 CTGGAGGGGGCTTCTTACC 59.084 63.158 0.00 0.00 0.00 2.85
999 1064 4.259952 GGCTTCTTACCCATGGCC 57.740 61.111 6.09 0.00 0.00 5.36
1000 1065 1.306296 GGCTTCTTACCCATGGCCA 59.694 57.895 8.56 8.56 39.38 5.36
1001 1066 0.106015 GGCTTCTTACCCATGGCCAT 60.106 55.000 14.09 14.09 39.38 4.40
1002 1067 1.035139 GCTTCTTACCCATGGCCATG 58.965 55.000 34.82 34.82 38.51 3.66
1014 1079 4.702274 GCCATGGCCCAGGTTGGT 62.702 66.667 27.24 0.00 35.17 3.67
1015 1080 2.681064 CCATGGCCCAGGTTGGTG 60.681 66.667 0.00 0.00 35.17 4.17
1016 1081 2.681064 CATGGCCCAGGTTGGTGG 60.681 66.667 0.00 0.00 35.17 4.61
1017 1082 2.863484 ATGGCCCAGGTTGGTGGA 60.863 61.111 0.00 0.00 40.44 4.02
1018 1083 2.922704 ATGGCCCAGGTTGGTGGAG 61.923 63.158 0.00 0.00 40.44 3.86
1020 1085 4.284550 GCCCAGGTTGGTGGAGCA 62.285 66.667 0.00 0.00 40.44 4.26
1021 1086 2.520458 CCCAGGTTGGTGGAGCAA 59.480 61.111 0.00 0.00 40.44 3.91
1022 1087 1.077265 CCCAGGTTGGTGGAGCAAT 59.923 57.895 0.00 0.00 40.44 3.56
1023 1088 1.252904 CCCAGGTTGGTGGAGCAATG 61.253 60.000 0.00 0.00 40.44 2.82
1026 1091 2.649129 GGTTGGTGGAGCAATGGGC 61.649 63.158 0.00 0.00 45.30 5.36
1098 5043 2.678934 AAGAGGCAGGACGCGGTA 60.679 61.111 12.47 0.00 43.84 4.02
1150 5095 1.045350 TGATAGGAAGCAGAGCCGCT 61.045 55.000 0.00 0.00 46.67 5.52
1343 5291 1.070786 GGGACACGGAGAGCAAACA 59.929 57.895 0.00 0.00 0.00 2.83
1344 5292 0.321653 GGGACACGGAGAGCAAACAT 60.322 55.000 0.00 0.00 0.00 2.71
1362 5310 3.260205 ACATGGGAGAAAGAGAAGGGAA 58.740 45.455 0.00 0.00 0.00 3.97
1568 5531 0.614697 TGGAGGTGGAGAATCGAGCA 60.615 55.000 0.00 0.00 44.11 4.26
1586 5549 3.429372 AAGGTGGTGGCTGGCGAAA 62.429 57.895 0.00 0.00 0.00 3.46
1636 5599 1.429423 GAAGGCGCGGAAATTGAGG 59.571 57.895 8.83 0.00 0.00 3.86
1717 5680 1.000955 AGTGCAGAGGTTTGTAGGACG 59.999 52.381 0.00 0.00 0.00 4.79
1824 5787 5.453198 CCCTGCAACCAAATAACAAAGAGTT 60.453 40.000 0.00 0.00 44.27 3.01
1891 5854 2.033049 GCACTAGTTCGGCGAAGAGATA 59.967 50.000 28.47 16.78 0.00 1.98
1992 5955 9.237187 TGATAAAAGTGAGCACAAATGGTATTA 57.763 29.630 3.19 0.00 36.44 0.98
2291 6254 9.927668 CACCTTAAGATACAAATCAACCAAAAT 57.072 29.630 3.36 0.00 34.28 1.82
2460 6471 0.820482 AAACGTGTGCCAACCCCTAC 60.820 55.000 0.00 0.00 0.00 3.18
2474 6489 1.135527 CCCCTACGCATAAGTTCACGA 59.864 52.381 0.00 0.00 0.00 4.35
2577 6593 8.344831 CAAGACATACATCAAGTGTTCTCAAAA 58.655 33.333 0.00 0.00 42.29 2.44
2590 6606 8.753497 AGTGTTCTCAAAATCCTTAAAGACTT 57.247 30.769 0.00 0.00 0.00 3.01
2699 6715 2.586258 AAGCTCGCGATACATCAAGT 57.414 45.000 10.36 0.00 0.00 3.16
2701 6717 2.893637 AGCTCGCGATACATCAAGTTT 58.106 42.857 10.36 0.00 0.00 2.66
2801 6819 2.703007 ACTACTCCCTTCTCATCATGGC 59.297 50.000 0.00 0.00 0.00 4.40
2820 6838 1.523711 GAGCGCCGGGATGATGAAA 60.524 57.895 2.29 0.00 0.00 2.69
2952 6973 9.358406 TGTTCTTCGATGTTTCTAGGGTATATA 57.642 33.333 0.00 0.00 0.00 0.86
2990 7011 5.359194 AGTGTTACTATTCATCACCCAGG 57.641 43.478 0.00 0.00 0.00 4.45
2991 7012 4.164221 AGTGTTACTATTCATCACCCAGGG 59.836 45.833 2.85 2.85 0.00 4.45
2992 7013 4.080526 GTGTTACTATTCATCACCCAGGGT 60.081 45.833 4.76 4.76 35.62 4.34
3004 7025 3.473113 ACCCAGGGTGCAGAATAAATT 57.527 42.857 11.70 0.00 32.98 1.82
3005 7026 4.601406 ACCCAGGGTGCAGAATAAATTA 57.399 40.909 11.70 0.00 32.98 1.40
3006 7027 5.142806 ACCCAGGGTGCAGAATAAATTAT 57.857 39.130 11.70 0.00 32.98 1.28
3007 7028 5.528337 ACCCAGGGTGCAGAATAAATTATT 58.472 37.500 11.70 0.00 32.98 1.40
3008 7029 5.963865 ACCCAGGGTGCAGAATAAATTATTT 59.036 36.000 11.70 0.00 32.98 1.40
3009 7030 6.443527 ACCCAGGGTGCAGAATAAATTATTTT 59.556 34.615 11.70 0.00 32.98 1.82
3010 7031 7.037658 ACCCAGGGTGCAGAATAAATTATTTTT 60.038 33.333 11.70 0.00 32.98 1.94
3011 7032 7.495606 CCCAGGGTGCAGAATAAATTATTTTTC 59.504 37.037 0.00 0.90 0.00 2.29
3012 7033 8.040132 CCAGGGTGCAGAATAAATTATTTTTCA 58.960 33.333 0.00 0.00 0.00 2.69
3013 7034 9.603921 CAGGGTGCAGAATAAATTATTTTTCAT 57.396 29.630 0.00 0.00 0.00 2.57
3014 7035 9.822185 AGGGTGCAGAATAAATTATTTTTCATC 57.178 29.630 0.00 0.00 0.00 2.92
3015 7036 9.045223 GGGTGCAGAATAAATTATTTTTCATCC 57.955 33.333 3.34 3.34 0.00 3.51
3016 7037 8.755018 GGTGCAGAATAAATTATTTTTCATCCG 58.245 33.333 0.00 0.00 0.00 4.18
3017 7038 9.515020 GTGCAGAATAAATTATTTTTCATCCGA 57.485 29.630 0.00 0.00 0.00 4.55
3018 7039 9.734620 TGCAGAATAAATTATTTTTCATCCGAG 57.265 29.630 0.00 0.00 0.00 4.63
3019 7040 9.185192 GCAGAATAAATTATTTTTCATCCGAGG 57.815 33.333 0.00 0.00 0.00 4.63
3031 7052 9.799106 ATTTTTCATCCGAGGTAATCTTATGAT 57.201 29.630 0.00 0.00 30.98 2.45
3092 7113 9.832445 AGTTACATTCCTATTGATTCATTACGT 57.168 29.630 0.00 0.00 0.00 3.57
3103 7124 8.994429 ATTGATTCATTACGTAAAATTTGGCA 57.006 26.923 12.81 2.75 0.00 4.92
3104 7125 8.994429 TTGATTCATTACGTAAAATTTGGCAT 57.006 26.923 12.81 2.64 0.00 4.40
3155 7176 8.335256 GACAAGAAAATTTGTCGTTTATGTGT 57.665 30.769 3.46 0.00 45.08 3.72
3156 7177 9.440784 GACAAGAAAATTTGTCGTTTATGTGTA 57.559 29.630 3.46 0.00 45.08 2.90
3157 7178 9.959749 ACAAGAAAATTTGTCGTTTATGTGTAT 57.040 25.926 0.00 0.00 36.60 2.29
3246 7267 6.660887 TTTTCTTACGGTGTCTTTTTACGT 57.339 33.333 0.00 0.00 41.10 3.57
3247 7268 5.888412 TTCTTACGGTGTCTTTTTACGTC 57.112 39.130 0.00 0.00 38.79 4.34
3248 7269 4.930963 TCTTACGGTGTCTTTTTACGTCA 58.069 39.130 0.00 0.00 38.79 4.35
3249 7270 4.977963 TCTTACGGTGTCTTTTTACGTCAG 59.022 41.667 0.00 0.00 38.79 3.51
3250 7271 3.441496 ACGGTGTCTTTTTACGTCAGA 57.559 42.857 0.00 0.00 31.39 3.27
3251 7272 3.784338 ACGGTGTCTTTTTACGTCAGAA 58.216 40.909 0.00 0.00 31.39 3.02
3252 7273 4.183101 ACGGTGTCTTTTTACGTCAGAAA 58.817 39.130 0.00 0.00 31.39 2.52
3253 7274 4.812626 ACGGTGTCTTTTTACGTCAGAAAT 59.187 37.500 0.00 0.00 31.39 2.17
3254 7275 5.984926 ACGGTGTCTTTTTACGTCAGAAATA 59.015 36.000 0.00 0.00 31.39 1.40
3255 7276 6.479660 ACGGTGTCTTTTTACGTCAGAAATAA 59.520 34.615 0.00 0.00 31.39 1.40
3256 7277 7.007697 CGGTGTCTTTTTACGTCAGAAATAAG 58.992 38.462 0.00 0.00 0.00 1.73
3257 7278 7.095940 CGGTGTCTTTTTACGTCAGAAATAAGA 60.096 37.037 0.00 0.00 0.00 2.10
3258 7279 8.221766 GGTGTCTTTTTACGTCAGAAATAAGAG 58.778 37.037 0.00 0.00 0.00 2.85
3259 7280 8.975439 GTGTCTTTTTACGTCAGAAATAAGAGA 58.025 33.333 0.00 0.00 0.00 3.10
3260 7281 9.537192 TGTCTTTTTACGTCAGAAATAAGAGAA 57.463 29.630 0.00 0.00 0.00 2.87
3268 7289 8.004585 ACGTCAGAAATAAGAGAAAAGTTACG 57.995 34.615 0.00 0.00 0.00 3.18
3269 7290 7.115947 ACGTCAGAAATAAGAGAAAAGTTACGG 59.884 37.037 0.00 0.00 0.00 4.02
3270 7291 7.327761 CGTCAGAAATAAGAGAAAAGTTACGGA 59.672 37.037 0.00 0.00 0.00 4.69
3271 7292 8.985805 GTCAGAAATAAGAGAAAAGTTACGGAA 58.014 33.333 0.00 0.00 0.00 4.30
3272 7293 8.985805 TCAGAAATAAGAGAAAAGTTACGGAAC 58.014 33.333 0.95 0.95 35.64 3.62
3273 7294 8.770828 CAGAAATAAGAGAAAAGTTACGGAACA 58.229 33.333 14.18 0.00 38.10 3.18
3274 7295 9.503399 AGAAATAAGAGAAAAGTTACGGAACAT 57.497 29.630 14.18 0.00 38.10 2.71
3283 7304 9.815936 AGAAAAGTTACGGAACATAAAATTACG 57.184 29.630 14.18 0.00 39.38 3.18
3284 7305 8.953507 AAAAGTTACGGAACATAAAATTACGG 57.046 30.769 14.18 0.00 37.72 4.02
3285 7306 6.667007 AGTTACGGAACATAAAATTACGGG 57.333 37.500 14.18 0.00 37.72 5.28
3286 7307 5.585844 AGTTACGGAACATAAAATTACGGGG 59.414 40.000 14.18 0.00 37.72 5.73
3543 7564 3.765051 TTCGCCGCCAAAAATCCA 58.235 50.000 0.00 0.00 0.00 3.41
3544 7565 1.287503 TTCGCCGCCAAAAATCCAC 59.712 52.632 0.00 0.00 0.00 4.02
3545 7566 2.126110 CGCCGCCAAAAATCCACC 60.126 61.111 0.00 0.00 0.00 4.61
3546 7567 2.126110 GCCGCCAAAAATCCACCG 60.126 61.111 0.00 0.00 0.00 4.94
3547 7568 2.571231 CCGCCAAAAATCCACCGG 59.429 61.111 0.00 0.00 0.00 5.28
3548 7569 1.974343 CCGCCAAAAATCCACCGGA 60.974 57.895 9.46 0.00 38.04 5.14
3549 7570 1.319614 CCGCCAAAAATCCACCGGAT 61.320 55.000 9.46 0.00 45.46 4.18
3550 7571 0.100503 CGCCAAAAATCCACCGGATC 59.899 55.000 9.46 0.00 42.27 3.36
3551 7572 0.459899 GCCAAAAATCCACCGGATCC 59.540 55.000 9.46 0.00 42.27 3.36
3552 7573 1.846007 CCAAAAATCCACCGGATCCA 58.154 50.000 9.46 0.00 42.27 3.41
3553 7574 1.750778 CCAAAAATCCACCGGATCCAG 59.249 52.381 9.46 2.18 42.27 3.86
3554 7575 1.134946 CAAAAATCCACCGGATCCAGC 59.865 52.381 9.46 0.00 42.27 4.85
3555 7576 0.748005 AAAATCCACCGGATCCAGCG 60.748 55.000 9.46 0.33 42.27 5.18
3556 7577 3.757248 AATCCACCGGATCCAGCGC 62.757 63.158 9.46 0.00 42.27 5.92
3559 7580 4.899239 CACCGGATCCAGCGCCTC 62.899 72.222 9.46 0.00 0.00 4.70
3563 7584 3.483869 GGATCCAGCGCCTCCCTT 61.484 66.667 6.95 0.00 0.00 3.95
3564 7585 2.110006 GATCCAGCGCCTCCCTTC 59.890 66.667 2.29 0.00 0.00 3.46
3565 7586 3.468326 GATCCAGCGCCTCCCTTCC 62.468 68.421 2.29 0.00 0.00 3.46
3566 7587 4.722535 TCCAGCGCCTCCCTTCCT 62.723 66.667 2.29 0.00 0.00 3.36
3567 7588 3.721706 CCAGCGCCTCCCTTCCTT 61.722 66.667 2.29 0.00 0.00 3.36
3568 7589 2.124942 CAGCGCCTCCCTTCCTTC 60.125 66.667 2.29 0.00 0.00 3.46
3569 7590 2.284995 AGCGCCTCCCTTCCTTCT 60.285 61.111 2.29 0.00 0.00 2.85
3570 7591 2.188207 GCGCCTCCCTTCCTTCTC 59.812 66.667 0.00 0.00 0.00 2.87
3571 7592 2.904131 CGCCTCCCTTCCTTCTCC 59.096 66.667 0.00 0.00 0.00 3.71
3572 7593 1.990060 CGCCTCCCTTCCTTCTCCA 60.990 63.158 0.00 0.00 0.00 3.86
3573 7594 1.911471 GCCTCCCTTCCTTCTCCAG 59.089 63.158 0.00 0.00 0.00 3.86
3574 7595 0.618968 GCCTCCCTTCCTTCTCCAGA 60.619 60.000 0.00 0.00 0.00 3.86
3575 7596 1.974197 GCCTCCCTTCCTTCTCCAGAT 60.974 57.143 0.00 0.00 0.00 2.90
3576 7597 2.486716 CCTCCCTTCCTTCTCCAGATT 58.513 52.381 0.00 0.00 0.00 2.40
3577 7598 2.437651 CCTCCCTTCCTTCTCCAGATTC 59.562 54.545 0.00 0.00 0.00 2.52
3578 7599 3.383223 CTCCCTTCCTTCTCCAGATTCT 58.617 50.000 0.00 0.00 0.00 2.40
3579 7600 3.110705 TCCCTTCCTTCTCCAGATTCTG 58.889 50.000 6.70 6.70 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 8.651589 ACCCTCGATATCACTTCTATATTTGA 57.348 34.615 3.12 0.00 0.00 2.69
163 167 1.131126 GGATTCGTTCGACTACGTCCA 59.869 52.381 12.10 0.00 42.01 4.02
279 326 3.376859 TCATTAAACCGGACATGCATCAC 59.623 43.478 9.46 0.00 0.00 3.06
363 428 6.086222 GTGATGTTTCGTCAATATGCAACTT 58.914 36.000 0.00 0.00 30.77 2.66
436 501 6.322201 CCTCACTCCTTGCCATGTTTAATAAT 59.678 38.462 0.00 0.00 0.00 1.28
523 588 9.192642 TCATAATATGCATATGGGGATTTTCTG 57.807 33.333 19.77 5.87 32.73 3.02
553 618 2.344025 GTTTAGGGCAGAACAGTACCG 58.656 52.381 0.00 0.00 0.00 4.02
554 619 2.039348 TGGTTTAGGGCAGAACAGTACC 59.961 50.000 0.00 0.00 0.00 3.34
563 628 7.339466 ACAACTCTAAAATATGGTTTAGGGCAG 59.661 37.037 6.68 3.47 42.87 4.85
615 680 6.434965 TGGGGTAGAAAAATGCCTAGTTTAAC 59.565 38.462 0.00 0.00 0.00 2.01
812 877 9.970395 CAAACCATGCATCATATGTAAATAACT 57.030 29.630 0.00 0.00 0.00 2.24
813 878 9.748708 ACAAACCATGCATCATATGTAAATAAC 57.251 29.630 0.00 0.00 0.00 1.89
814 879 9.747293 CACAAACCATGCATCATATGTAAATAA 57.253 29.630 0.00 0.00 0.00 1.40
815 880 9.129532 TCACAAACCATGCATCATATGTAAATA 57.870 29.630 0.00 0.00 0.00 1.40
816 881 8.009622 TCACAAACCATGCATCATATGTAAAT 57.990 30.769 0.00 0.00 0.00 1.40
817 882 7.338957 TCTCACAAACCATGCATCATATGTAAA 59.661 33.333 0.00 0.00 0.00 2.01
818 883 6.827762 TCTCACAAACCATGCATCATATGTAA 59.172 34.615 0.00 0.00 0.00 2.41
819 884 6.355747 TCTCACAAACCATGCATCATATGTA 58.644 36.000 0.00 0.00 0.00 2.29
820 885 5.195185 TCTCACAAACCATGCATCATATGT 58.805 37.500 0.00 0.00 0.00 2.29
821 886 5.761165 TCTCACAAACCATGCATCATATG 57.239 39.130 0.00 0.00 0.00 1.78
822 887 7.886446 TCATATCTCACAAACCATGCATCATAT 59.114 33.333 0.00 0.00 0.00 1.78
823 888 7.225725 TCATATCTCACAAACCATGCATCATA 58.774 34.615 0.00 0.00 0.00 2.15
824 889 6.066032 TCATATCTCACAAACCATGCATCAT 58.934 36.000 0.00 0.00 0.00 2.45
825 890 5.438833 TCATATCTCACAAACCATGCATCA 58.561 37.500 0.00 0.00 0.00 3.07
826 891 6.570672 ATCATATCTCACAAACCATGCATC 57.429 37.500 0.00 0.00 0.00 3.91
827 892 7.362660 GCATATCATATCTCACAAACCATGCAT 60.363 37.037 0.00 0.00 35.24 3.96
828 893 6.072342 GCATATCATATCTCACAAACCATGCA 60.072 38.462 0.00 0.00 35.24 3.96
829 894 6.072342 TGCATATCATATCTCACAAACCATGC 60.072 38.462 0.00 0.00 35.60 4.06
830 895 7.443259 TGCATATCATATCTCACAAACCATG 57.557 36.000 0.00 0.00 0.00 3.66
831 896 7.886446 TCATGCATATCATATCTCACAAACCAT 59.114 33.333 0.00 0.00 33.19 3.55
832 897 7.225725 TCATGCATATCATATCTCACAAACCA 58.774 34.615 0.00 0.00 33.19 3.67
833 898 7.677454 TCATGCATATCATATCTCACAAACC 57.323 36.000 0.00 0.00 33.19 3.27
834 899 8.562052 TGTTCATGCATATCATATCTCACAAAC 58.438 33.333 0.00 0.00 33.19 2.93
835 900 8.680039 TGTTCATGCATATCATATCTCACAAA 57.320 30.769 0.00 0.00 33.19 2.83
836 901 8.726988 CATGTTCATGCATATCATATCTCACAA 58.273 33.333 0.00 0.00 33.19 3.33
837 902 7.335924 CCATGTTCATGCATATCATATCTCACA 59.664 37.037 0.00 0.00 33.19 3.58
838 903 7.551617 TCCATGTTCATGCATATCATATCTCAC 59.448 37.037 0.00 0.00 33.19 3.51
839 904 7.626390 TCCATGTTCATGCATATCATATCTCA 58.374 34.615 0.00 0.00 33.19 3.27
840 905 7.226918 CCTCCATGTTCATGCATATCATATCTC 59.773 40.741 0.00 0.00 33.19 2.75
841 906 7.054751 CCTCCATGTTCATGCATATCATATCT 58.945 38.462 0.00 0.00 33.19 1.98
842 907 6.262496 CCCTCCATGTTCATGCATATCATATC 59.738 42.308 0.00 0.00 33.19 1.63
843 908 6.127101 CCCTCCATGTTCATGCATATCATAT 58.873 40.000 0.00 0.00 33.19 1.78
844 909 5.014438 ACCCTCCATGTTCATGCATATCATA 59.986 40.000 0.00 0.00 33.19 2.15
845 910 4.202641 ACCCTCCATGTTCATGCATATCAT 60.203 41.667 0.00 1.70 35.31 2.45
846 911 3.138839 ACCCTCCATGTTCATGCATATCA 59.861 43.478 0.00 0.00 0.00 2.15
847 912 3.759581 ACCCTCCATGTTCATGCATATC 58.240 45.455 0.00 0.00 0.00 1.63
848 913 3.889859 ACCCTCCATGTTCATGCATAT 57.110 42.857 0.00 0.00 0.00 1.78
849 914 3.668141 AACCCTCCATGTTCATGCATA 57.332 42.857 0.00 0.00 0.00 3.14
850 915 2.537633 AACCCTCCATGTTCATGCAT 57.462 45.000 7.21 0.00 0.00 3.96
851 916 2.307496 AAACCCTCCATGTTCATGCA 57.693 45.000 7.21 0.00 0.00 3.96
852 917 3.259123 AGAAAAACCCTCCATGTTCATGC 59.741 43.478 7.21 0.00 0.00 4.06
853 918 5.476599 TGTAGAAAAACCCTCCATGTTCATG 59.523 40.000 5.88 5.88 0.00 3.07
854 919 5.640147 TGTAGAAAAACCCTCCATGTTCAT 58.360 37.500 0.00 0.00 0.00 2.57
855 920 5.055265 TGTAGAAAAACCCTCCATGTTCA 57.945 39.130 0.00 0.00 0.00 3.18
856 921 6.399639 TTTGTAGAAAAACCCTCCATGTTC 57.600 37.500 0.00 0.00 0.00 3.18
857 922 6.782494 AGATTTGTAGAAAAACCCTCCATGTT 59.218 34.615 0.00 0.00 0.00 2.71
858 923 6.209391 CAGATTTGTAGAAAAACCCTCCATGT 59.791 38.462 0.00 0.00 0.00 3.21
859 924 6.624423 CAGATTTGTAGAAAAACCCTCCATG 58.376 40.000 0.00 0.00 0.00 3.66
860 925 5.185828 GCAGATTTGTAGAAAAACCCTCCAT 59.814 40.000 0.00 0.00 0.00 3.41
861 926 4.522789 GCAGATTTGTAGAAAAACCCTCCA 59.477 41.667 0.00 0.00 0.00 3.86
862 927 4.082190 GGCAGATTTGTAGAAAAACCCTCC 60.082 45.833 0.00 0.00 0.00 4.30
863 928 4.522789 TGGCAGATTTGTAGAAAAACCCTC 59.477 41.667 0.00 0.00 0.00 4.30
864 929 4.479158 TGGCAGATTTGTAGAAAAACCCT 58.521 39.130 0.00 0.00 0.00 4.34
865 930 4.864704 TGGCAGATTTGTAGAAAAACCC 57.135 40.909 0.00 0.00 0.00 4.11
866 931 6.280643 AGTTTGGCAGATTTGTAGAAAAACC 58.719 36.000 0.00 0.00 0.00 3.27
867 932 6.420903 GGAGTTTGGCAGATTTGTAGAAAAAC 59.579 38.462 0.00 0.00 0.00 2.43
868 933 6.323739 AGGAGTTTGGCAGATTTGTAGAAAAA 59.676 34.615 0.00 0.00 0.00 1.94
869 934 5.833131 AGGAGTTTGGCAGATTTGTAGAAAA 59.167 36.000 0.00 0.00 0.00 2.29
870 935 5.241506 CAGGAGTTTGGCAGATTTGTAGAAA 59.758 40.000 0.00 0.00 0.00 2.52
871 936 4.761739 CAGGAGTTTGGCAGATTTGTAGAA 59.238 41.667 0.00 0.00 0.00 2.10
872 937 4.326826 CAGGAGTTTGGCAGATTTGTAGA 58.673 43.478 0.00 0.00 0.00 2.59
873 938 3.441572 CCAGGAGTTTGGCAGATTTGTAG 59.558 47.826 0.00 0.00 0.00 2.74
874 939 3.073798 TCCAGGAGTTTGGCAGATTTGTA 59.926 43.478 0.00 0.00 38.16 2.41
875 940 2.158475 TCCAGGAGTTTGGCAGATTTGT 60.158 45.455 0.00 0.00 38.16 2.83
876 941 2.517959 TCCAGGAGTTTGGCAGATTTG 58.482 47.619 0.00 0.00 38.16 2.32
877 942 2.978156 TCCAGGAGTTTGGCAGATTT 57.022 45.000 0.00 0.00 38.16 2.17
878 943 4.591321 TTATCCAGGAGTTTGGCAGATT 57.409 40.909 0.00 0.00 38.16 2.40
879 944 4.591321 TTTATCCAGGAGTTTGGCAGAT 57.409 40.909 0.00 0.00 38.16 2.90
880 945 4.018506 TCATTTATCCAGGAGTTTGGCAGA 60.019 41.667 0.00 0.00 38.16 4.26
881 946 4.272489 TCATTTATCCAGGAGTTTGGCAG 58.728 43.478 0.00 0.00 38.16 4.85
882 947 4.314522 TCATTTATCCAGGAGTTTGGCA 57.685 40.909 0.00 0.00 38.16 4.92
883 948 5.859205 ATTCATTTATCCAGGAGTTTGGC 57.141 39.130 0.00 0.00 38.16 4.52
887 952 8.352942 GCGAATTTATTCATTTATCCAGGAGTT 58.647 33.333 0.00 0.00 36.61 3.01
888 953 7.502226 TGCGAATTTATTCATTTATCCAGGAGT 59.498 33.333 0.00 0.00 36.61 3.85
889 954 7.874940 TGCGAATTTATTCATTTATCCAGGAG 58.125 34.615 0.00 0.00 36.61 3.69
890 955 7.522073 GCTGCGAATTTATTCATTTATCCAGGA 60.522 37.037 0.00 0.00 36.61 3.86
891 956 6.583806 GCTGCGAATTTATTCATTTATCCAGG 59.416 38.462 3.61 0.00 36.61 4.45
892 957 7.140705 TGCTGCGAATTTATTCATTTATCCAG 58.859 34.615 3.61 0.00 36.61 3.86
893 958 7.036996 TGCTGCGAATTTATTCATTTATCCA 57.963 32.000 3.61 0.00 36.61 3.41
894 959 7.115378 CCTTGCTGCGAATTTATTCATTTATCC 59.885 37.037 3.61 0.00 36.61 2.59
895 960 7.115378 CCCTTGCTGCGAATTTATTCATTTATC 59.885 37.037 3.61 0.00 36.61 1.75
896 961 6.925165 CCCTTGCTGCGAATTTATTCATTTAT 59.075 34.615 3.61 0.00 36.61 1.40
897 962 6.096141 TCCCTTGCTGCGAATTTATTCATTTA 59.904 34.615 3.61 0.00 36.61 1.40
898 963 5.105392 TCCCTTGCTGCGAATTTATTCATTT 60.105 36.000 3.61 0.00 36.61 2.32
899 964 4.402155 TCCCTTGCTGCGAATTTATTCATT 59.598 37.500 3.61 0.00 36.61 2.57
900 965 3.953612 TCCCTTGCTGCGAATTTATTCAT 59.046 39.130 3.61 0.00 36.61 2.57
901 966 3.351740 TCCCTTGCTGCGAATTTATTCA 58.648 40.909 3.61 0.00 36.61 2.57
902 967 4.370364 TTCCCTTGCTGCGAATTTATTC 57.630 40.909 0.00 0.00 0.00 1.75
903 968 4.799564 TTTCCCTTGCTGCGAATTTATT 57.200 36.364 0.00 0.00 0.00 1.40
904 969 4.799564 TTTTCCCTTGCTGCGAATTTAT 57.200 36.364 0.00 0.00 0.00 1.40
905 970 4.592485 TTTTTCCCTTGCTGCGAATTTA 57.408 36.364 0.00 0.00 0.00 1.40
906 971 3.467374 TTTTTCCCTTGCTGCGAATTT 57.533 38.095 0.00 0.00 0.00 1.82
924 989 4.142116 CCAGTTTTTCCCCGTGTAGTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
925 990 3.382227 CCAGTTTTTCCCCGTGTAGTTTT 59.618 43.478 0.00 0.00 0.00 2.43
926 991 2.953648 CCAGTTTTTCCCCGTGTAGTTT 59.046 45.455 0.00 0.00 0.00 2.66
927 992 2.092267 ACCAGTTTTTCCCCGTGTAGTT 60.092 45.455 0.00 0.00 0.00 2.24
928 993 1.491754 ACCAGTTTTTCCCCGTGTAGT 59.508 47.619 0.00 0.00 0.00 2.73
929 994 2.265589 ACCAGTTTTTCCCCGTGTAG 57.734 50.000 0.00 0.00 0.00 2.74
930 995 2.299521 CAACCAGTTTTTCCCCGTGTA 58.700 47.619 0.00 0.00 0.00 2.90
931 996 1.107945 CAACCAGTTTTTCCCCGTGT 58.892 50.000 0.00 0.00 0.00 4.49
932 997 1.107945 ACAACCAGTTTTTCCCCGTG 58.892 50.000 0.00 0.00 0.00 4.94
933 998 1.107945 CACAACCAGTTTTTCCCCGT 58.892 50.000 0.00 0.00 0.00 5.28
934 999 0.249280 GCACAACCAGTTTTTCCCCG 60.249 55.000 0.00 0.00 0.00 5.73
935 1000 0.105964 GGCACAACCAGTTTTTCCCC 59.894 55.000 0.00 0.00 38.86 4.81
936 1001 0.827368 TGGCACAACCAGTTTTTCCC 59.173 50.000 0.00 0.00 46.36 3.97
949 1014 0.399833 TCCTATGCACTGTTGGCACA 59.600 50.000 0.00 0.00 45.23 4.57
950 1015 1.470098 CTTCCTATGCACTGTTGGCAC 59.530 52.381 0.00 0.00 45.23 5.01
951 1016 1.614051 CCTTCCTATGCACTGTTGGCA 60.614 52.381 0.00 0.00 46.66 4.92
952 1017 1.098050 CCTTCCTATGCACTGTTGGC 58.902 55.000 0.00 0.00 0.00 4.52
953 1018 1.683011 CCCCTTCCTATGCACTGTTGG 60.683 57.143 0.00 0.00 0.00 3.77
954 1019 1.755179 CCCCTTCCTATGCACTGTTG 58.245 55.000 0.00 0.00 0.00 3.33
955 1020 0.034089 GCCCCTTCCTATGCACTGTT 60.034 55.000 0.00 0.00 0.00 3.16
956 1021 0.916358 AGCCCCTTCCTATGCACTGT 60.916 55.000 0.00 0.00 0.00 3.55
957 1022 0.465097 CAGCCCCTTCCTATGCACTG 60.465 60.000 0.00 0.00 0.00 3.66
958 1023 1.639635 CCAGCCCCTTCCTATGCACT 61.640 60.000 0.00 0.00 0.00 4.40
959 1024 1.152881 CCAGCCCCTTCCTATGCAC 60.153 63.158 0.00 0.00 0.00 4.57
960 1025 1.307778 TCCAGCCCCTTCCTATGCA 60.308 57.895 0.00 0.00 0.00 3.96
961 1026 1.453669 CTCCAGCCCCTTCCTATGC 59.546 63.158 0.00 0.00 0.00 3.14
962 1027 1.422161 CCCTCCAGCCCCTTCCTATG 61.422 65.000 0.00 0.00 0.00 2.23
963 1028 1.073397 CCCTCCAGCCCCTTCCTAT 60.073 63.158 0.00 0.00 0.00 2.57
964 1029 2.372688 CCCTCCAGCCCCTTCCTA 59.627 66.667 0.00 0.00 0.00 2.94
965 1030 4.767892 CCCCTCCAGCCCCTTCCT 62.768 72.222 0.00 0.00 0.00 3.36
972 1037 2.001269 TAAGAAGCCCCCTCCAGCC 61.001 63.158 0.00 0.00 0.00 4.85
973 1038 1.224870 GTAAGAAGCCCCCTCCAGC 59.775 63.158 0.00 0.00 0.00 4.85
974 1039 1.636769 GGGTAAGAAGCCCCCTCCAG 61.637 65.000 0.00 0.00 40.26 3.86
975 1040 1.618447 GGGTAAGAAGCCCCCTCCA 60.618 63.158 0.00 0.00 40.26 3.86
976 1041 0.994050 ATGGGTAAGAAGCCCCCTCC 60.994 60.000 0.00 0.00 45.49 4.30
977 1042 0.183731 CATGGGTAAGAAGCCCCCTC 59.816 60.000 0.00 0.00 45.49 4.30
978 1043 1.289244 CCATGGGTAAGAAGCCCCCT 61.289 60.000 2.85 0.00 45.49 4.79
979 1044 1.230212 CCATGGGTAAGAAGCCCCC 59.770 63.158 2.85 0.00 45.49 5.40
980 1045 1.455773 GCCATGGGTAAGAAGCCCC 60.456 63.158 15.13 0.00 45.49 5.80
981 1046 1.455773 GGCCATGGGTAAGAAGCCC 60.456 63.158 15.13 0.00 43.03 5.19
982 1047 0.106015 ATGGCCATGGGTAAGAAGCC 60.106 55.000 20.04 6.12 44.02 4.35
983 1048 1.035139 CATGGCCATGGGTAAGAAGC 58.965 55.000 34.31 0.00 35.24 3.86
997 1062 4.702274 ACCAACCTGGGCCATGGC 62.702 66.667 29.47 29.47 43.37 4.40
998 1063 2.681064 CACCAACCTGGGCCATGG 60.681 66.667 20.62 20.62 43.37 3.66
999 1064 2.681064 CCACCAACCTGGGCCATG 60.681 66.667 6.72 7.06 43.37 3.66
1000 1065 2.863484 TCCACCAACCTGGGCCAT 60.863 61.111 6.72 0.00 43.37 4.40
1001 1066 3.579302 CTCCACCAACCTGGGCCA 61.579 66.667 5.85 5.85 43.37 5.36
1003 1068 3.808218 TTGCTCCACCAACCTGGGC 62.808 63.158 0.00 0.00 43.37 5.36
1004 1069 1.077265 ATTGCTCCACCAACCTGGG 59.923 57.895 0.00 0.00 43.37 4.45
1005 1070 1.252904 CCATTGCTCCACCAACCTGG 61.253 60.000 0.00 0.00 45.02 4.45
1006 1071 1.252904 CCCATTGCTCCACCAACCTG 61.253 60.000 0.00 0.00 0.00 4.00
1007 1072 1.077265 CCCATTGCTCCACCAACCT 59.923 57.895 0.00 0.00 0.00 3.50
1008 1073 2.649129 GCCCATTGCTCCACCAACC 61.649 63.158 0.00 0.00 36.87 3.77
1009 1074 2.649129 GGCCCATTGCTCCACCAAC 61.649 63.158 0.00 0.00 40.92 3.77
1010 1075 2.283821 GGCCCATTGCTCCACCAA 60.284 61.111 0.00 0.00 40.92 3.67
1011 1076 4.738998 CGGCCCATTGCTCCACCA 62.739 66.667 0.00 0.00 40.92 4.17
1051 1116 1.083806 CCAGCTATGCACGCTTTCGA 61.084 55.000 9.45 0.00 39.41 3.71
1098 5043 2.663852 CTCGTCCCAACCGCGTTT 60.664 61.111 4.92 0.00 0.00 3.60
1121 5066 3.767902 GCTTCCTATCAAGCAGAGGAT 57.232 47.619 0.26 0.00 46.93 3.24
1131 5076 1.045350 AGCGGCTCTGCTTCCTATCA 61.045 55.000 0.00 0.00 44.46 2.15
1343 5291 2.240921 GCTTCCCTTCTCTTTCTCCCAT 59.759 50.000 0.00 0.00 0.00 4.00
1344 5292 1.630878 GCTTCCCTTCTCTTTCTCCCA 59.369 52.381 0.00 0.00 0.00 4.37
1362 5310 4.070552 GAACAGGCCGACCTCGCT 62.071 66.667 0.00 0.00 46.34 4.93
1382 5330 1.144057 GATCCCGTTGGAGCATCGT 59.856 57.895 0.00 0.00 46.65 3.73
1568 5531 3.429372 TTTCGCCAGCCACCACCTT 62.429 57.895 0.00 0.00 0.00 3.50
1619 5582 1.002624 TCCTCAATTTCCGCGCCTT 60.003 52.632 0.00 0.00 0.00 4.35
1636 5599 0.466124 GACATCAGCCACCTACCCTC 59.534 60.000 0.00 0.00 0.00 4.30
1717 5680 3.193479 CCACTTGAGGGAAATTTGCTACC 59.807 47.826 9.70 0.00 0.00 3.18
1891 5854 5.766670 CCATCCATATTGCACTTGTATCACT 59.233 40.000 0.00 0.00 0.00 3.41
1985 5948 5.690997 TGTTTCAACGCATTGTAATACCA 57.309 34.783 0.00 0.00 37.11 3.25
1992 5955 1.537990 GGCCTTGTTTCAACGCATTGT 60.538 47.619 0.00 0.00 37.11 2.71
2275 6238 9.083422 TGACATTAGGATTTTGGTTGATTTGTA 57.917 29.630 0.00 0.00 0.00 2.41
2291 6254 6.275692 TGGAGTATCTAGGTGACATTAGGA 57.724 41.667 0.00 0.00 33.73 2.94
2474 6489 2.571212 TGGTGATCAACTTGCGAGTTT 58.429 42.857 17.05 3.49 43.48 2.66
2590 6606 8.930527 TCCCTTTGAAGTTATCTTATCGGATTA 58.069 33.333 0.00 0.00 33.64 1.75
2699 6715 4.951254 TCGTGTTCTTGAGGTGATACAAA 58.049 39.130 0.00 0.00 0.00 2.83
2701 6717 3.824443 TCTCGTGTTCTTGAGGTGATACA 59.176 43.478 0.00 0.00 33.00 2.29
2790 6808 2.279717 GCGCTCGCCATGATGAGA 60.280 61.111 15.70 0.00 34.04 3.27
2801 6819 3.790334 TTCATCATCCCGGCGCTCG 62.790 63.158 7.64 9.53 38.88 5.03
2820 6838 3.411517 CCCTCTCCGGTGGCCATT 61.412 66.667 9.72 0.00 0.00 3.16
2848 6868 1.488705 CCTGTTCCAGTACCCTGCCA 61.489 60.000 0.00 0.00 37.38 4.92
2859 6879 5.987347 CGAAAACTAAACTAGACCTGTTCCA 59.013 40.000 0.00 0.00 0.00 3.53
2873 6894 4.312443 CTCTGTAGCCACCGAAAACTAAA 58.688 43.478 0.00 0.00 0.00 1.85
2876 6897 1.002087 CCTCTGTAGCCACCGAAAACT 59.998 52.381 0.00 0.00 0.00 2.66
2925 6946 5.422214 ACCCTAGAAACATCGAAGAACAT 57.578 39.130 0.00 0.00 43.58 2.71
2969 6990 4.080526 ACCCTGGGTGATGAATAGTAACAC 60.081 45.833 19.82 0.00 32.98 3.32
2970 6991 4.108570 ACCCTGGGTGATGAATAGTAACA 58.891 43.478 19.82 0.00 32.98 2.41
2971 6992 4.772886 ACCCTGGGTGATGAATAGTAAC 57.227 45.455 19.82 0.00 32.98 2.50
2984 7005 3.473113 AATTTATTCTGCACCCTGGGT 57.527 42.857 14.05 14.05 35.62 4.51
2985 7006 6.484364 AAATAATTTATTCTGCACCCTGGG 57.516 37.500 12.28 12.28 0.00 4.45
2986 7007 8.040132 TGAAAAATAATTTATTCTGCACCCTGG 58.960 33.333 2.22 0.00 0.00 4.45
2987 7008 9.603921 ATGAAAAATAATTTATTCTGCACCCTG 57.396 29.630 2.22 0.00 0.00 4.45
2988 7009 9.822185 GATGAAAAATAATTTATTCTGCACCCT 57.178 29.630 2.22 0.00 0.00 4.34
2989 7010 9.045223 GGATGAAAAATAATTTATTCTGCACCC 57.955 33.333 2.22 0.00 0.00 4.61
2990 7011 8.755018 CGGATGAAAAATAATTTATTCTGCACC 58.245 33.333 2.22 0.00 0.00 5.01
2991 7012 9.515020 TCGGATGAAAAATAATTTATTCTGCAC 57.485 29.630 2.22 0.00 0.00 4.57
2992 7013 9.734620 CTCGGATGAAAAATAATTTATTCTGCA 57.265 29.630 2.22 0.00 0.00 4.41
2993 7014 9.185192 CCTCGGATGAAAAATAATTTATTCTGC 57.815 33.333 2.22 0.00 0.00 4.26
3005 7026 9.799106 ATCATAAGATTACCTCGGATGAAAAAT 57.201 29.630 0.00 0.00 35.10 1.82
3066 7087 9.832445 ACGTAATGAATCAATAGGAATGTAACT 57.168 29.630 5.19 0.00 0.00 2.24
3078 7099 8.994429 TGCCAAATTTTACGTAATGAATCAAT 57.006 26.923 9.18 1.92 0.00 2.57
3079 7100 8.994429 ATGCCAAATTTTACGTAATGAATCAA 57.006 26.923 9.18 0.00 0.00 2.57
3131 7152 9.959749 ATACACATAAACGACAAATTTTCTTGT 57.040 25.926 0.00 0.00 42.23 3.16
3220 7241 8.992073 ACGTAAAAAGACACCGTAAGAAAATAT 58.008 29.630 0.00 0.00 43.02 1.28
3221 7242 8.364129 ACGTAAAAAGACACCGTAAGAAAATA 57.636 30.769 0.00 0.00 43.02 1.40
3222 7243 7.011295 TGACGTAAAAAGACACCGTAAGAAAAT 59.989 33.333 0.00 0.00 43.02 1.82
3223 7244 6.312426 TGACGTAAAAAGACACCGTAAGAAAA 59.688 34.615 0.00 0.00 43.02 2.29
3224 7245 5.809562 TGACGTAAAAAGACACCGTAAGAAA 59.190 36.000 0.00 0.00 43.02 2.52
3225 7246 5.347342 TGACGTAAAAAGACACCGTAAGAA 58.653 37.500 0.00 0.00 43.02 2.52
3226 7247 4.930963 TGACGTAAAAAGACACCGTAAGA 58.069 39.130 0.00 0.00 43.02 2.10
3227 7248 4.977963 TCTGACGTAAAAAGACACCGTAAG 59.022 41.667 0.00 0.00 32.47 2.34
3228 7249 4.930963 TCTGACGTAAAAAGACACCGTAA 58.069 39.130 0.00 0.00 0.00 3.18
3229 7250 4.566545 TCTGACGTAAAAAGACACCGTA 57.433 40.909 0.00 0.00 0.00 4.02
3230 7251 3.441496 TCTGACGTAAAAAGACACCGT 57.559 42.857 0.00 0.00 0.00 4.83
3231 7252 4.782252 TTTCTGACGTAAAAAGACACCG 57.218 40.909 0.00 0.00 0.00 4.94
3232 7253 8.080083 TCTTATTTCTGACGTAAAAAGACACC 57.920 34.615 0.00 0.00 0.00 4.16
3233 7254 8.975439 TCTCTTATTTCTGACGTAAAAAGACAC 58.025 33.333 0.00 0.00 0.00 3.67
3234 7255 9.537192 TTCTCTTATTTCTGACGTAAAAAGACA 57.463 29.630 0.00 0.00 0.00 3.41
3242 7263 9.121517 CGTAACTTTTCTCTTATTTCTGACGTA 57.878 33.333 0.00 0.00 0.00 3.57
3243 7264 7.115947 CCGTAACTTTTCTCTTATTTCTGACGT 59.884 37.037 0.00 0.00 0.00 4.34
3244 7265 7.327761 TCCGTAACTTTTCTCTTATTTCTGACG 59.672 37.037 0.00 0.00 0.00 4.35
3245 7266 8.530269 TCCGTAACTTTTCTCTTATTTCTGAC 57.470 34.615 0.00 0.00 0.00 3.51
3246 7267 8.985805 GTTCCGTAACTTTTCTCTTATTTCTGA 58.014 33.333 0.00 0.00 32.54 3.27
3247 7268 8.770828 TGTTCCGTAACTTTTCTCTTATTTCTG 58.229 33.333 0.00 0.00 36.51 3.02
3248 7269 8.897872 TGTTCCGTAACTTTTCTCTTATTTCT 57.102 30.769 0.00 0.00 36.51 2.52
3257 7278 9.815936 CGTAATTTTATGTTCCGTAACTTTTCT 57.184 29.630 0.00 0.00 36.51 2.52
3258 7279 9.054191 CCGTAATTTTATGTTCCGTAACTTTTC 57.946 33.333 0.00 0.00 36.51 2.29
3259 7280 8.022550 CCCGTAATTTTATGTTCCGTAACTTTT 58.977 33.333 0.00 0.00 36.51 2.27
3260 7281 7.361971 CCCCGTAATTTTATGTTCCGTAACTTT 60.362 37.037 0.00 0.00 36.51 2.66
3261 7282 6.093909 CCCCGTAATTTTATGTTCCGTAACTT 59.906 38.462 0.00 0.00 36.51 2.66
3262 7283 5.585844 CCCCGTAATTTTATGTTCCGTAACT 59.414 40.000 0.00 0.00 36.51 2.24
3263 7284 5.809464 CCCCGTAATTTTATGTTCCGTAAC 58.191 41.667 0.00 0.00 36.07 2.50
3526 7547 1.287503 GTGGATTTTTGGCGGCGAA 59.712 52.632 12.98 7.71 0.00 4.70
3527 7548 2.631580 GGTGGATTTTTGGCGGCGA 61.632 57.895 12.98 0.00 0.00 5.54
3528 7549 2.126110 GGTGGATTTTTGGCGGCG 60.126 61.111 0.51 0.51 0.00 6.46
3529 7550 2.126110 CGGTGGATTTTTGGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
3530 7551 1.319614 ATCCGGTGGATTTTTGGCGG 61.320 55.000 0.00 0.00 39.79 6.13
3531 7552 0.100503 GATCCGGTGGATTTTTGGCG 59.899 55.000 0.00 0.00 43.27 5.69
3532 7553 0.459899 GGATCCGGTGGATTTTTGGC 59.540 55.000 0.00 0.00 43.27 4.52
3533 7554 1.750778 CTGGATCCGGTGGATTTTTGG 59.249 52.381 12.93 0.00 43.27 3.28
3534 7555 1.134946 GCTGGATCCGGTGGATTTTTG 59.865 52.381 21.88 0.00 43.27 2.44
3535 7556 1.474330 GCTGGATCCGGTGGATTTTT 58.526 50.000 21.88 0.00 43.27 1.94
3536 7557 0.748005 CGCTGGATCCGGTGGATTTT 60.748 55.000 24.27 0.00 43.27 1.82
3537 7558 1.153168 CGCTGGATCCGGTGGATTT 60.153 57.895 24.27 0.00 43.27 2.17
3538 7559 2.505982 CGCTGGATCCGGTGGATT 59.494 61.111 24.27 0.00 43.27 3.01
3539 7560 4.241555 GCGCTGGATCCGGTGGAT 62.242 66.667 30.72 0.00 46.28 3.41
3542 7563 4.899239 GAGGCGCTGGATCCGGTG 62.899 72.222 27.01 27.01 36.03 4.94
3546 7567 3.468326 GAAGGGAGGCGCTGGATCC 62.468 68.421 7.64 4.20 0.00 3.36
3547 7568 2.110006 GAAGGGAGGCGCTGGATC 59.890 66.667 7.64 0.22 0.00 3.36
3548 7569 3.483869 GGAAGGGAGGCGCTGGAT 61.484 66.667 7.64 0.00 0.00 3.41
3549 7570 4.722535 AGGAAGGGAGGCGCTGGA 62.723 66.667 7.64 0.00 0.00 3.86
3550 7571 3.689002 GAAGGAAGGGAGGCGCTGG 62.689 68.421 7.64 0.00 0.00 4.85
3551 7572 2.124942 GAAGGAAGGGAGGCGCTG 60.125 66.667 7.64 0.00 0.00 5.18
3552 7573 2.284995 AGAAGGAAGGGAGGCGCT 60.285 61.111 7.64 0.00 0.00 5.92
3553 7574 2.188207 GAGAAGGAAGGGAGGCGC 59.812 66.667 0.00 0.00 0.00 6.53
3554 7575 1.965754 CTGGAGAAGGAAGGGAGGCG 61.966 65.000 0.00 0.00 0.00 5.52
3555 7576 0.618968 TCTGGAGAAGGAAGGGAGGC 60.619 60.000 0.00 0.00 0.00 4.70
3556 7577 2.188818 ATCTGGAGAAGGAAGGGAGG 57.811 55.000 0.00 0.00 0.00 4.30
3557 7578 3.134442 CAGAATCTGGAGAAGGAAGGGAG 59.866 52.174 1.53 0.00 0.00 4.30
3558 7579 3.110705 CAGAATCTGGAGAAGGAAGGGA 58.889 50.000 1.53 0.00 0.00 4.20
3559 7580 3.557228 CAGAATCTGGAGAAGGAAGGG 57.443 52.381 1.53 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.