AutoCloner

Multiple sequence alignment - TraesCS6A01G093600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G093600	chr6A	100.000	2735	0	0	1	2735	61211789	61209055	0.000000e+00	5051.0
1	TraesCS6A01G093600	chr6A	92.708	192	12	2	900	1090	61210723	61210533	2.680000e-70	276.0
2	TraesCS6A01G093600	chr6A	92.708	192	12	2	1067	1257	61210890	61210700	2.680000e-70	276.0
3	TraesCS6A01G093600	chr6A	82.039	206	25	11	2539	2735	574948392	574948594	6.060000e-37	165.0
4	TraesCS6A01G093600	chr1A	95.738	1314	30	11	560	1848	9208050	9209362	0.000000e+00	2093.0
5	TraesCS6A01G093600	chr1A	84.180	512	57	6	565	1074	208195351	208194862	2.460000e-130	475.0
6	TraesCS6A01G093600	chr1A	92.578	256	15	4	1005	1257	9208348	9208602	5.570000e-97	364.0
7	TraesCS6A01G093600	chr1A	80.785	484	58	18	1378	1851	208194653	208194195	2.020000e-91	346.0
8	TraesCS6A01G093600	chr1A	80.688	378	51	12	1076	1453	208195028	208194673	9.650000e-70	274.0
9	TraesCS6A01G093600	chr1A	91.146	192	15	2	900	1090	9208579	9208769	2.700000e-65	259.0
10	TraesCS6A01G093600	chr1A	83.929	112	18	0	919	1030	208194895	208194784	1.040000e-19	108.0
11	TraesCS6A01G093600	chr1A	92.188	64	1	4	858	920	9208517	9208577	1.350000e-13	87.9
12	TraesCS6A01G093600	chr1A	85.294	68	6	3	1202	1267	219383856	219383791	1.760000e-07	67.6
13	TraesCS6A01G093600	chr1D	94.835	697	34	2	1027	1721	70603255	70603951	0.000000e+00	1086.0
14	TraesCS6A01G093600	chr1D	84.387	506	47	10	1376	1850	153810887	153811391	4.120000e-128	468.0
15	TraesCS6A01G093600	chr1D	89.306	346	14	4	768	1090	70603141	70603486	1.960000e-111	412.0
16	TraesCS6A01G093600	chr1D	96.311	244	8	1	1607	1849	348031881	348032124	1.530000e-107	399.0
17	TraesCS6A01G093600	chr1D	82.118	425	52	9	1023	1447	153810463	153810863	2.610000e-90	342.0
18	TraesCS6A01G093600	chr1D	80.655	336	28	11	555	880	153778182	153778490	2.740000e-55	226.0
19	TraesCS6A01G093600	chr1D	86.413	184	24	1	1020	1202	83697066	83696883	1.660000e-47	200.0
20	TraesCS6A01G093600	chr1D	88.667	150	16	1	869	1018	70603411	70603559	6.020000e-42	182.0
21	TraesCS6A01G093600	chr6B	88.533	593	23	7	1	557	117706742	117706159	0.000000e+00	676.0
22	TraesCS6A01G093600	chr6B	87.805	410	20	9	1865	2262	117706159	117705768	1.150000e-123	453.0
23	TraesCS6A01G093600	chr6B	90.361	332	24	5	2265	2589	652532082	652531752	1.950000e-116	429.0
24	TraesCS6A01G093600	chr6B	87.382	317	31	4	2260	2567	439411752	439412068	3.350000e-94	355.0
25	TraesCS6A01G093600	chr6B	94.059	101	6	0	2635	2735	652531652	652531552	1.310000e-33	154.0
26	TraesCS6A01G093600	chr6B	81.731	104	11	4	1886	1981	117709749	117709646	2.260000e-11	80.5
27	TraesCS6A01G093600	chr6D	91.262	412	23	4	1865	2265	53775874	53776283	1.430000e-152	549.0
28	TraesCS6A01G093600	chr6D	93.243	296	14	3	262	557	53775585	53775874	5.410000e-117	431.0
29	TraesCS6A01G093600	chr6D	94.737	266	13	1	1	265	53775288	53775553	1.960000e-111	412.0
30	TraesCS6A01G093600	chr6D	88.750	160	17	1	1020	1178	355879576	355879735	7.730000e-46	195.0
31	TraesCS6A01G093600	chr6D	96.970	33	1	0	1946	1978	53771293	53771325	3.800000e-04	56.5
32	TraesCS6A01G093600	chr4A	84.356	505	44	19	2266	2735	715865537	715866041	1.920000e-126	462.0
33	TraesCS6A01G093600	chr4A	82.857	175	17	9	2568	2735	26475793	26475625	7.890000e-31	145.0
34	TraesCS6A01G093600	chr2D	88.450	329	29	5	2265	2590	542685797	542685475	3.300000e-104	388.0
35	TraesCS6A01G093600	chr2D	85.161	155	22	1	1022	1175	578923580	578923426	1.010000e-34	158.0
36	TraesCS6A01G093600	chr2D	93.137	102	6	1	2635	2735	482155894	482155793	6.100000e-32	148.0
37	TraesCS6A01G093600	chr7D	87.952	332	31	5	2265	2589	419134862	419134533	1.540000e-102	383.0
38	TraesCS6A01G093600	chr7D	82.927	123	16	5	1067	1187	413244814	413244695	3.720000e-19	106.0
39	TraesCS6A01G093600	chr7D	87.059	85	8	3	2549	2632	115780006	115780088	2.900000e-15	93.5
40	TraesCS6A01G093600	chr5B	85.135	370	53	2	563	931	571221702	571221334	7.150000e-101	377.0
41	TraesCS6A01G093600	chr5B	86.769	325	36	6	2263	2584	33888335	33888015	3.350000e-94	355.0
42	TraesCS6A01G093600	chr3D	87.963	324	31	4	2265	2580	583317027	583316704	2.570000e-100	375.0
43	TraesCS6A01G093600	chr3D	87.931	58	6	1	1212	1269	574741994	574742050	1.760000e-07	67.6
44	TraesCS6A01G093600	chrUn	87.387	333	32	7	2260	2589	81909399	81909724	9.250000e-100	374.0
45	TraesCS6A01G093600	chr2B	87.425	334	31	7	2265	2590	621780802	621781132	9.250000e-100	374.0
46	TraesCS6A01G093600	chr5D	86.970	330	32	7	2265	2584	69320952	69320624	7.200000e-96	361.0
47	TraesCS6A01G093600	chr5D	86.577	149	13	5	2593	2735	241346554	241346407	1.010000e-34	158.0
48	TraesCS6A01G093600	chr3A	81.008	516	40	20	2265	2735	416578244	416578746	9.310000e-95	357.0
49	TraesCS6A01G093600	chr3A	82.353	136	20	4	796	929	36340291	36340424	6.190000e-22	115.0
50	TraesCS6A01G093600	chr3B	79.317	527	51	31	2264	2735	19859235	19859758	1.580000e-82	316.0
51	TraesCS6A01G093600	chr3B	91.111	45	4	0	563	607	434708020	434707976	8.180000e-06	62.1
52	TraesCS6A01G093600	chr7B	80.739	379	41	18	1376	1724	221314783	221315159	1.610000e-67	267.0
53	TraesCS6A01G093600	chr7B	94.545	110	6	0	836	945	221314324	221314433	1.300000e-38	171.0
54	TraesCS6A01G093600	chr7B	73.882	425	73	27	1022	1423	197696651	197696242	4.750000e-28	135.0
55	TraesCS6A01G093600	chr7B	93.750	80	5	0	851	930	197696677	197696598	1.330000e-23	121.0
56	TraesCS6A01G093600	chr2A	84.545	220	28	5	2519	2734	715927059	715926842	2.130000e-51	213.0
57	TraesCS6A01G093600	chr2A	83.871	155	25	0	1022	1176	716453850	716453696	6.100000e-32	148.0
58	TraesCS6A01G093600	chr4B	90.323	93	9	0	851	943	501500967	501500875	3.700000e-24	122.0
59	TraesCS6A01G093600	chr4B	87.255	102	7	3	1212	1312	501500717	501500621	8.010000e-21	111.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G093600	chr6A	61209055	61211789	2734	True	1867.666667	5051	95.138667	1	2735	3	chr6A.!!$R1	2734
1	TraesCS6A01G093600	chr1A	9208050	9209362	1312	False	700.975000	2093	92.912500	560	1848	4	chr1A.!!$F1	1288
2	TraesCS6A01G093600	chr1A	208194195	208195351	1156	True	300.750000	475	82.395500	565	1851	4	chr1A.!!$R2	1286
3	TraesCS6A01G093600	chr1D	70603141	70603951	810	False	560.000000	1086	90.936000	768	1721	3	chr1D.!!$F3	953
4	TraesCS6A01G093600	chr1D	153810463	153811391	928	False	405.000000	468	83.252500	1023	1850	2	chr1D.!!$F4	827
5	TraesCS6A01G093600	chr6B	117705768	117709749	3981	True	403.166667	676	86.023000	1	2262	3	chr6B.!!$R1	2261
6	TraesCS6A01G093600	chr6B	652531552	652532082	530	True	291.500000	429	92.210000	2265	2735	2	chr6B.!!$R2	470
7	TraesCS6A01G093600	chr6D	53771293	53776283	4990	False	362.125000	549	94.053000	1	2265	4	chr6D.!!$F2	2264
8	TraesCS6A01G093600	chr4A	715865537	715866041	504	False	462.000000	462	84.356000	2266	2735	1	chr4A.!!$F1	469
9	TraesCS6A01G093600	chr3A	416578244	416578746	502	False	357.000000	357	81.008000	2265	2735	1	chr3A.!!$F2	470
10	TraesCS6A01G093600	chr3B	19859235	19859758	523	False	316.000000	316	79.317000	2264	2735	1	chr3B.!!$F1	471
11	TraesCS6A01G093600	chr7B	221314324	221315159	835	False	219.000000	267	87.642000	836	1724	2	chr7B.!!$F1	888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
947	5845	0.893447	GAAAGCTTCATTGCAGCCCT	59.107	50.0	0.0	0.0	38.09	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2280	7450	0.604578	TACGAACCGGTGCTAAAGCT	59.395	50.0	8.52	0.0	42.66	3.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	4875	7.186570	TGACAAGATCAACATGGATAGAGAA	57.813	36.000	0.00	0.00	33.02	2.87
76	4908	3.834013	TTGACGCCATTGGTGCCGA	62.834	57.895	16.17	1.95	36.54	5.54
148	4980	1.067915	GTGTTGTTGTGTGCTTGTGGT	60.068	47.619	0.00	0.00	0.00	4.16
158	4990	1.136828	TGCTTGTGGTTAGGAGTGGT	58.863	50.000	0.00	0.00	0.00	4.16
203	5035	1.577328	GCTGATTGGGTCACGTGTGG	61.577	60.000	16.51	0.00	32.22	4.17
296	5163	1.204146	GGAAGCCCTGATGTACTCCA	58.796	55.000	0.00	0.00	0.00	3.86
354	5223	0.975556	TGACCGCTGGATGAGCCTTA	60.976	55.000	1.50	0.00	46.01	2.69
947	5845	0.893447	GAAAGCTTCATTGCAGCCCT	59.107	50.000	0.00	0.00	38.09	5.19
1111	6028	0.599558	TGGTGAAGCTTCATTGCAGC	59.400	50.000	30.65	18.12	39.73	5.25
1683	6823	0.391661	TCAGATGCAACGGAAGAGGC	60.392	55.000	0.00	0.00	0.00	4.70
1747	6888	2.544685	CCGTGTGAAGGAGATAAGCTG	58.455	52.381	0.00	0.00	0.00	4.24
1785	6926	2.168496	CCTCGTTCTCTTAGGGACACA	58.832	52.381	0.00	0.00	0.00	3.72
1851	6992	6.652900	CCGGTTGATTTTAAACATTTCCCATT	59.347	34.615	0.00	0.00	0.00	3.16
1852	6993	7.148490	CCGGTTGATTTTAAACATTTCCCATTC	60.148	37.037	0.00	0.00	0.00	2.67
1853	6994	7.386299	CGGTTGATTTTAAACATTTCCCATTCA	59.614	33.333	0.00	0.00	0.00	2.57
1854	6995	8.503196	GGTTGATTTTAAACATTTCCCATTCAC	58.497	33.333	0.00	0.00	0.00	3.18
1855	6996	9.050601	GTTGATTTTAAACATTTCCCATTCACA	57.949	29.630	0.00	0.00	0.00	3.58
1856	6997	9.790344	TTGATTTTAAACATTTCCCATTCACAT	57.210	25.926	0.00	0.00	0.00	3.21
1863	7004	7.823745	AACATTTCCCATTCACATATACTCC	57.176	36.000	0.00	0.00	0.00	3.85
1889	7030	6.917533	ACCAGTTTTTCAGATGATCATCAAC	58.082	36.000	31.99	25.56	40.22	3.18
1916	7057	9.205719	AGATCAGAATCGAGTCAAATTCATATG	57.794	33.333	16.10	0.00	36.97	1.78
1939	7080	8.786937	ATGCGTGCTTATAAATTTCACTTATG	57.213	30.769	0.00	0.00	0.00	1.90
1940	7081	7.757526	TGCGTGCTTATAAATTTCACTTATGT	58.242	30.769	0.00	0.00	0.00	2.29
1941	7082	8.884726	TGCGTGCTTATAAATTTCACTTATGTA	58.115	29.630	0.00	0.00	0.00	2.29
1983	7149	4.882427	GCTCTTAAATTAGGACAGGAACCC	59.118	45.833	0.00	0.00	0.00	4.11
1984	7150	5.437946	CTCTTAAATTAGGACAGGAACCCC	58.562	45.833	0.00	0.00	0.00	4.95
1985	7151	4.228895	TCTTAAATTAGGACAGGAACCCCC	59.771	45.833	0.00	0.00	0.00	5.40
1987	7153	2.378308	ATTAGGACAGGAACCCCCTT	57.622	50.000	0.00	0.00	44.85	3.95
1988	7154	2.143231	TTAGGACAGGAACCCCCTTT	57.857	50.000	0.00	0.00	44.85	3.11
1989	7155	2.143231	TAGGACAGGAACCCCCTTTT	57.857	50.000	0.00	0.00	44.85	2.27
1990	7156	1.241485	AGGACAGGAACCCCCTTTTT	58.759	50.000	0.00	0.00	44.85	1.94
2051	7217	9.965902	ATATAATTTGAAGTTTGACCTCACTCT	57.034	29.630	0.00	0.00	0.00	3.24
2058	7224	4.079253	AGTTTGACCTCACTCTCTCTCTC	58.921	47.826	0.00	0.00	0.00	3.20
2062	7228	3.197766	TGACCTCACTCTCTCTCTCTCTC	59.802	52.174	0.00	0.00	0.00	3.20
2064	7230	3.452627	ACCTCACTCTCTCTCTCTCTCTC	59.547	52.174	0.00	0.00	0.00	3.20
2280	7450	2.930887	GCAATCACTAGTGCAGAACCGA	60.931	50.000	18.45	0.00	45.84	4.69
2304	7474	1.252904	TAGCACCGGTTCGTAAGGCT	61.253	55.000	16.41	16.41	38.47	4.58
2305	7475	1.670083	GCACCGGTTCGTAAGGCTT	60.670	57.895	2.97	4.58	38.47	4.35
2452	7628	8.303780	GGAGACCTTTAGTACCAGTTAGTAAT	57.696	38.462	0.00	0.00	0.00	1.89
2598	7821	6.992063	AAATAGAATGTCTCACATCACACC	57.008	37.500	0.00	0.00	37.97	4.16
2599	7822	5.682234	ATAGAATGTCTCACATCACACCA	57.318	39.130	0.00	0.00	37.97	4.17
2600	7823	4.564782	AGAATGTCTCACATCACACCAT	57.435	40.909	0.00	0.00	37.97	3.55
2605	7828	4.004982	TGTCTCACATCACACCATTCATG	58.995	43.478	0.00	0.00	0.00	3.07
2615	7838	2.754552	ACACCATTCATGCACACATACC	59.245	45.455	0.00	0.00	33.67	2.73
2627	7850	8.328014	TCATGCACACATACCCACATATATATT	58.672	33.333	0.00	0.00	33.67	1.28
2662	7919	4.361451	CCGGCGAGGTATATTTACGTAT	57.639	45.455	9.30	0.00	34.51	3.06
2663	7920	4.100529	CCGGCGAGGTATATTTACGTATG	58.899	47.826	9.30	0.00	34.51	2.39
2685	7942	9.937175	GTATGGTAGCAATTTAGAGATTGTTTC	57.063	33.333	0.00	0.00	38.86	2.78

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	3.780902	TGTCAGCTTACACACCATATCG	58.219	45.455	0.00	0.00	0.00	2.92
43	4875	3.057946	GGCGTCAAAGCTCAAGATTTCTT	60.058	43.478	0.00	0.00	37.29	2.52
203	5035	8.077386	GGCACTACTATTAACAGATCTCAGTAC	58.923	40.741	0.00	0.00	0.00	2.73
361	5230	0.319986	TGGTATCGTTGCGCACTTCA	60.320	50.000	11.12	0.00	0.00	3.02
363	5232	0.601576	TGTGGTATCGTTGCGCACTT	60.602	50.000	11.12	0.00	0.00	3.16
489	5364	8.846943	TGTACTGTCATAGACATGTGAAAATT	57.153	30.769	1.15	0.00	41.94	1.82
491	5366	9.936759	TTATGTACTGTCATAGACATGTGAAAA	57.063	29.630	1.15	0.00	41.94	2.29
523	5398	9.920133	AATACATAGTGCAATATAGTCAGACAG	57.080	33.333	6.32	0.00	0.00	3.51
527	5402	9.696917	TGTGAATACATAGTGCAATATAGTCAG	57.303	33.333	6.32	0.00	0.00	3.51
556	5431	1.825090	CTGATTTGTAGCAGTGCCCA	58.175	50.000	12.58	6.21	33.13	5.36
557	5432	0.453390	GCTGATTTGTAGCAGTGCCC	59.547	55.000	12.58	3.17	39.95	5.36
558	5433	0.453390	GGCTGATTTGTAGCAGTGCC	59.547	55.000	12.58	0.00	42.88	5.01
1018	5916	1.851021	CGCTCGGTGTTGCCATGAAA	61.851	55.000	0.00	0.00	36.97	2.69
1130	6047	0.394565	ATTGGAGCAGCGATAGGGTC	59.605	55.000	0.00	0.00	0.00	4.46
1177	6094	0.179163	GTTGCCATAAAGCGCCACTC	60.179	55.000	2.29	0.00	34.65	3.51
1206	6123	1.079317	GAAGCTTCGCCGGAGAAGTC	61.079	60.000	37.54	30.47	46.82	3.01
1209	6126	0.036388	AATGAAGCTTCGCCGGAGAA	60.036	50.000	19.99	19.99	0.00	2.87
1425	6533	2.012673	GTTGCATCGAAGCAGGAAGAT	58.987	47.619	15.58	0.00	46.54	2.40
1683	6823	2.630580	CCTATCTTCTTTCCTCTCCCCG	59.369	54.545	0.00	0.00	0.00	5.73
1747	6888	4.851179	CCGCCGCTTTACCCCTCC	62.851	72.222	0.00	0.00	0.00	4.30
1785	6926	2.186384	GGCTGCTCTGCTCGACAT	59.814	61.111	0.00	0.00	0.00	3.06
1851	6992	8.141298	TGAAAAACTGGTAGGAGTATATGTGA	57.859	34.615	0.00	0.00	0.00	3.58
1852	6993	8.258007	TCTGAAAAACTGGTAGGAGTATATGTG	58.742	37.037	0.00	0.00	0.00	3.21
1853	6994	8.375493	TCTGAAAAACTGGTAGGAGTATATGT	57.625	34.615	0.00	0.00	0.00	2.29
1854	6995	9.265901	CATCTGAAAAACTGGTAGGAGTATATG	57.734	37.037	0.00	0.00	0.00	1.78
1855	6996	9.213777	TCATCTGAAAAACTGGTAGGAGTATAT	57.786	33.333	0.00	0.00	0.00	0.86
1856	6997	8.603898	TCATCTGAAAAACTGGTAGGAGTATA	57.396	34.615	0.00	0.00	0.00	1.47
1857	6998	7.496346	TCATCTGAAAAACTGGTAGGAGTAT	57.504	36.000	0.00	0.00	0.00	2.12
1858	6999	6.928348	TCATCTGAAAAACTGGTAGGAGTA	57.072	37.500	0.00	0.00	0.00	2.59
1859	7000	5.825593	TCATCTGAAAAACTGGTAGGAGT	57.174	39.130	0.00	0.00	0.00	3.85
1860	7001	6.409704	TGATCATCTGAAAAACTGGTAGGAG	58.590	40.000	0.00	0.00	0.00	3.69
1861	7002	6.373005	TGATCATCTGAAAAACTGGTAGGA	57.627	37.500	0.00	0.00	0.00	2.94
1862	7003	6.825213	TGATGATCATCTGAAAAACTGGTAGG	59.175	38.462	30.65	0.00	38.60	3.18
1863	7004	7.854557	TGATGATCATCTGAAAAACTGGTAG	57.145	36.000	30.65	0.00	38.60	3.18
1889	7030	6.898912	TGAATTTGACTCGATTCTGATCTG	57.101	37.500	4.29	0.00	34.24	2.90
1916	7057	9.878599	ATACATAAGTGAAATTTATAAGCACGC	57.121	29.630	0.00	0.00	34.82	5.34
1989	7155	9.699410	AGATTTCCATAGTAATCATGGTTCAAA	57.301	29.630	0.00	0.00	43.03	2.69
1990	7156	9.342308	GAGATTTCCATAGTAATCATGGTTCAA	57.658	33.333	0.00	0.00	43.03	2.69
1991	7157	8.493607	TGAGATTTCCATAGTAATCATGGTTCA	58.506	33.333	0.00	0.00	43.03	3.18
1992	7158	8.908786	TGAGATTTCCATAGTAATCATGGTTC	57.091	34.615	0.00	0.00	43.03	3.62
2047	7213	4.081420	GTCACAGAGAGAGAGAGAGAGAGT	60.081	50.000	0.00	0.00	0.00	3.24
2051	7217	4.096681	AGAGTCACAGAGAGAGAGAGAGA	58.903	47.826	0.00	0.00	0.00	3.10
2058	7224	3.063861	CGACATGAGAGTCACAGAGAGAG	59.936	52.174	0.00	0.00	38.43	3.20
2062	7228	1.468908	GGCGACATGAGAGTCACAGAG	60.469	57.143	0.00	0.00	38.43	3.35
2064	7230	0.799917	CGGCGACATGAGAGTCACAG	60.800	60.000	0.00	0.00	38.43	3.66
2208	7375	4.705991	TGTGCATGATCTTGGAAGCATAAA	59.294	37.500	10.35	0.00	34.24	1.40
2209	7376	4.096833	GTGTGCATGATCTTGGAAGCATAA	59.903	41.667	10.35	0.00	34.24	1.90
2210	7377	3.628942	GTGTGCATGATCTTGGAAGCATA	59.371	43.478	10.35	0.00	34.24	3.14
2280	7450	0.604578	TACGAACCGGTGCTAAAGCT	59.395	50.000	8.52	0.00	42.66	3.74
2304	7474	3.065648	GGTTGCAGAACCGACACTAAAAA	59.934	43.478	0.00	0.00	42.47	1.94
2305	7475	2.614983	GGTTGCAGAACCGACACTAAAA	59.385	45.455	0.00	0.00	42.47	1.52
2589	7812	2.229543	GTGTGCATGAATGGTGTGATGT	59.770	45.455	0.00	0.00	0.00	3.06
2592	7815	1.978454	TGTGTGCATGAATGGTGTGA	58.022	45.000	0.00	0.00	0.00	3.58
2597	7820	2.099592	GTGGGTATGTGTGCATGAATGG	59.900	50.000	0.00	0.00	36.58	3.16
2598	7821	2.754002	TGTGGGTATGTGTGCATGAATG	59.246	45.455	0.00	0.00	36.58	2.67
2599	7822	3.084536	TGTGGGTATGTGTGCATGAAT	57.915	42.857	0.00	0.00	36.58	2.57
2600	7823	2.575805	TGTGGGTATGTGTGCATGAA	57.424	45.000	0.00	0.00	36.58	2.57
2627	7850	3.255725	CTCGCCGGTCTTTGTTGTATAA	58.744	45.455	1.90	0.00	0.00	0.98
2662	7919	9.162764	GTAGAAACAATCTCTAAATTGCTACCA	57.837	33.333	0.00	0.00	39.72	3.25
2663	7920	9.162764	TGTAGAAACAATCTCTAAATTGCTACC	57.837	33.333	0.00	0.00	39.72	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.