Multiple sequence alignment - TraesCS6A01G093100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G093100 chr6A 100.000 6209 0 0 1 6209 60999019 61005227 0.000000e+00 11466.0
1 TraesCS6A01G093100 chr6A 83.951 81 9 3 3969 4045 104118411 104118331 2.400000e-09 75.0
2 TraesCS6A01G093100 chr6B 94.997 5077 172 25 818 5841 116602810 116607857 0.000000e+00 7893.0
3 TraesCS6A01G093100 chr6B 86.232 552 64 9 2677 3224 70031859 70031316 6.930000e-164 588.0
4 TraesCS6A01G093100 chr6B 87.090 457 51 6 2677 3130 70049204 70048753 1.540000e-140 510.0
5 TraesCS6A01G093100 chr6B 86.871 457 51 7 2677 3130 70047536 70047086 2.580000e-138 503.0
6 TraesCS6A01G093100 chr6D 95.401 3327 112 13 816 4107 54269853 54266533 0.000000e+00 5258.0
7 TraesCS6A01G093100 chr6D 96.073 1655 53 7 4195 5841 54266534 54264884 0.000000e+00 2686.0
8 TraesCS6A01G093100 chr6D 87.500 112 11 3 5821 5929 469536296 469536407 6.530000e-25 126.0
9 TraesCS6A01G093100 chr1A 98.517 809 12 0 1 809 588660620 588661428 0.000000e+00 1428.0
10 TraesCS6A01G093100 chr1A 96.310 813 29 1 1 812 532430839 532431651 0.000000e+00 1334.0
11 TraesCS6A01G093100 chr1A 93.617 47 1 2 3969 4014 568391198 568391243 1.120000e-07 69.4
12 TraesCS6A01G093100 chr7A 96.402 806 28 1 1 806 705424894 705424090 0.000000e+00 1327.0
13 TraesCS6A01G093100 chr7A 82.412 597 61 15 3290 3868 726290642 726290072 1.210000e-131 481.0
14 TraesCS6A01G093100 chr7A 81.742 597 65 16 3290 3868 726241628 726241058 5.670000e-125 459.0
15 TraesCS6A01G093100 chr7A 89.691 97 10 0 5836 5932 184126828 184126732 2.350000e-24 124.0
16 TraesCS6A01G093100 chr7A 94.000 50 2 1 3966 4014 652249018 652249067 2.400000e-09 75.0
17 TraesCS6A01G093100 chr1B 88.999 809 82 5 1 805 26877118 26877923 0.000000e+00 994.0
18 TraesCS6A01G093100 chr1B 89.326 356 33 3 3514 3868 615488437 615488788 5.710000e-120 442.0
19 TraesCS6A01G093100 chr1B 86.986 146 16 1 6054 6199 540363052 540362910 1.790000e-35 161.0
20 TraesCS6A01G093100 chr5B 89.098 798 77 6 1 795 391453195 391453985 0.000000e+00 983.0
21 TraesCS6A01G093100 chr5B 83.292 814 126 7 1 806 705126538 705125727 0.000000e+00 741.0
22 TraesCS6A01G093100 chr5B 88.571 70 6 2 3974 4042 233695443 233695511 3.990000e-12 84.2
23 TraesCS6A01G093100 chr2B 83.088 816 126 9 1 807 416275361 416276173 0.000000e+00 732.0
24 TraesCS6A01G093100 chr2B 80.583 824 131 23 2 808 68232704 68233515 5.320000e-170 608.0
25 TraesCS6A01G093100 chr2B 90.816 98 6 3 5832 5928 216854651 216854556 1.820000e-25 128.0
26 TraesCS6A01G093100 chr3D 88.022 551 58 6 2677 3224 421789671 421789126 0.000000e+00 645.0
27 TraesCS6A01G093100 chr3D 90.625 96 8 1 5838 5933 208025446 208025540 6.530000e-25 126.0
28 TraesCS6A01G093100 chr3D 88.235 102 11 1 5838 5939 203684633 203684533 3.040000e-23 121.0
29 TraesCS6A01G093100 chr3D 96.875 32 1 0 776 807 113312083 113312052 3.000000e-03 54.7
30 TraesCS6A01G093100 chrUn 82.909 550 92 2 2 550 1209308 1208760 1.550000e-135 494.0
31 TraesCS6A01G093100 chr3B 86.298 416 52 3 3455 3870 811777960 811777550 1.230000e-121 448.0
32 TraesCS6A01G093100 chr4A 84.932 146 17 2 6054 6199 598313403 598313263 6.490000e-30 143.0
33 TraesCS6A01G093100 chr5A 85.294 136 15 4 2718 2853 617225874 617225744 1.090000e-27 135.0
34 TraesCS6A01G093100 chr7D 84.397 141 17 4 2713 2853 507234398 507234263 3.900000e-27 134.0
35 TraesCS6A01G093100 chr7D 82.270 141 20 4 2713 2853 498387773 498387908 3.930000e-22 117.0
36 TraesCS6A01G093100 chr5D 84.397 141 17 4 2713 2853 90693414 90693549 3.900000e-27 134.0
37 TraesCS6A01G093100 chr5D 84.397 141 17 4 2713 2853 117888555 117888420 3.900000e-27 134.0
38 TraesCS6A01G093100 chr5D 87.013 77 4 5 3966 4037 45654433 45654358 1.430000e-11 82.4
39 TraesCS6A01G093100 chr5D 92.593 54 2 2 3964 4015 173756299 173756246 6.670000e-10 76.8
40 TraesCS6A01G093100 chr2A 93.258 89 6 0 5839 5927 678421977 678422065 1.400000e-26 132.0
41 TraesCS6A01G093100 chr4D 92.222 90 7 0 5840 5929 383775649 383775560 1.820000e-25 128.0
42 TraesCS6A01G093100 chr4D 90.625 96 7 2 5835 5929 28237898 28237804 6.530000e-25 126.0
43 TraesCS6A01G093100 chr4B 89.691 97 10 0 5839 5935 91298400 91298304 2.350000e-24 124.0
44 TraesCS6A01G093100 chr1D 92.157 51 2 2 3967 4015 59951839 59951889 3.110000e-08 71.3
45 TraesCS6A01G093100 chr3A 96.970 33 0 1 773 804 501189351 501189383 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G093100 chr6A 60999019 61005227 6208 False 11466.0 11466 100.0000 1 6209 1 chr6A.!!$F1 6208
1 TraesCS6A01G093100 chr6B 116602810 116607857 5047 False 7893.0 7893 94.9970 818 5841 1 chr6B.!!$F1 5023
2 TraesCS6A01G093100 chr6B 70031316 70031859 543 True 588.0 588 86.2320 2677 3224 1 chr6B.!!$R1 547
3 TraesCS6A01G093100 chr6B 70047086 70049204 2118 True 506.5 510 86.9805 2677 3130 2 chr6B.!!$R2 453
4 TraesCS6A01G093100 chr6D 54264884 54269853 4969 True 3972.0 5258 95.7370 816 5841 2 chr6D.!!$R1 5025
5 TraesCS6A01G093100 chr1A 588660620 588661428 808 False 1428.0 1428 98.5170 1 809 1 chr1A.!!$F3 808
6 TraesCS6A01G093100 chr1A 532430839 532431651 812 False 1334.0 1334 96.3100 1 812 1 chr1A.!!$F1 811
7 TraesCS6A01G093100 chr7A 705424090 705424894 804 True 1327.0 1327 96.4020 1 806 1 chr7A.!!$R2 805
8 TraesCS6A01G093100 chr7A 726290072 726290642 570 True 481.0 481 82.4120 3290 3868 1 chr7A.!!$R4 578
9 TraesCS6A01G093100 chr7A 726241058 726241628 570 True 459.0 459 81.7420 3290 3868 1 chr7A.!!$R3 578
10 TraesCS6A01G093100 chr1B 26877118 26877923 805 False 994.0 994 88.9990 1 805 1 chr1B.!!$F1 804
11 TraesCS6A01G093100 chr5B 391453195 391453985 790 False 983.0 983 89.0980 1 795 1 chr5B.!!$F2 794
12 TraesCS6A01G093100 chr5B 705125727 705126538 811 True 741.0 741 83.2920 1 806 1 chr5B.!!$R1 805
13 TraesCS6A01G093100 chr2B 416275361 416276173 812 False 732.0 732 83.0880 1 807 1 chr2B.!!$F2 806
14 TraesCS6A01G093100 chr2B 68232704 68233515 811 False 608.0 608 80.5830 2 808 1 chr2B.!!$F1 806
15 TraesCS6A01G093100 chr3D 421789126 421789671 545 True 645.0 645 88.0220 2677 3224 1 chr3D.!!$R3 547
16 TraesCS6A01G093100 chrUn 1208760 1209308 548 True 494.0 494 82.9090 2 550 1 chrUn.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 289 0.386476 AATCCGTCGTATGGCGCTAA 59.614 50.000 7.64 0.0 41.07 3.09 F
767 778 0.679002 AGCTCTACGGTGAAGGCGTA 60.679 55.000 0.00 0.0 0.00 4.42 F
939 955 0.803117 GTTCTTCCGGCTAAAGTGGC 59.197 55.000 0.00 0.0 0.00 5.01 F
1570 1616 0.889994 GGCATCTGTGGTTGATTGCA 59.110 50.000 0.00 0.0 0.00 4.08 F
1825 1872 1.614241 CGACGGGGGAACTCAAGGAT 61.614 60.000 0.00 0.0 0.00 3.24 F
2092 2139 2.173782 TGTTGGTGCTTTGAGGGAAGTA 59.826 45.455 0.00 0.0 0.00 2.24 F
3788 5527 1.118965 TTCACCAGGCACGAGGAAGA 61.119 55.000 0.00 0.0 32.83 2.87 F
4857 6599 1.026718 GCTGTGGTTGCCGCTATCTT 61.027 55.000 0.30 0.0 34.70 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1525 0.810426 CAGCAGAGCGCATGAGTGAT 60.810 55.000 11.47 0.00 46.13 3.06 R
2357 2405 0.329434 AATTGGGGGAGGGCCTGATA 60.329 55.000 12.95 0.00 0.00 2.15 R
2722 2770 1.892474 TCCAATAGTGTTTTGGCCTGC 59.108 47.619 3.32 0.00 42.79 4.85 R
3090 4811 2.797156 GCATGCAAGACGAGTATACCAG 59.203 50.000 14.21 0.00 0.00 4.00 R
3782 5521 2.641815 AGCAACCATTGACTCTCTTCCT 59.358 45.455 0.00 0.00 0.00 3.36 R
3946 5687 0.325602 TGGGTTAGGTAGGGCAAACG 59.674 55.000 0.00 0.00 0.00 3.60 R
5137 6879 0.036765 TTACCGCTGTCGATGGCTTT 60.037 50.000 10.07 1.23 38.10 3.51 R
6085 7851 0.043907 CTAATGTCGTGCACGCATCG 60.044 55.000 33.29 26.16 39.60 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 289 0.386476 AATCCGTCGTATGGCGCTAA 59.614 50.000 7.64 0.00 41.07 3.09
483 485 0.759959 TTTCGGTGTGAACCCTAGCA 59.240 50.000 0.00 0.00 35.97 3.49
767 778 0.679002 AGCTCTACGGTGAAGGCGTA 60.679 55.000 0.00 0.00 0.00 4.42
812 826 4.390129 CCTAGCTAGAGGGGAATCACTA 57.610 50.000 22.70 0.00 32.39 2.74
813 827 4.083565 CCTAGCTAGAGGGGAATCACTAC 58.916 52.174 22.70 0.00 32.39 2.73
814 828 3.689872 AGCTAGAGGGGAATCACTACA 57.310 47.619 0.00 0.00 0.00 2.74
820 834 5.779241 AGAGGGGAATCACTACATTTTGA 57.221 39.130 0.00 0.00 0.00 2.69
939 955 0.803117 GTTCTTCCGGCTAAAGTGGC 59.197 55.000 0.00 0.00 0.00 5.01
956 972 3.222323 CGTCGTCTTCGTCGTCGC 61.222 66.667 0.00 0.00 41.73 5.19
988 1004 4.717629 CGGCGGCGTTGACTCTGA 62.718 66.667 24.74 0.00 0.00 3.27
1065 1081 4.371417 AGCCTGGTCGGTCGGGTA 62.371 66.667 0.00 0.00 35.63 3.69
1329 1369 2.786495 CCTCGACACCATCCTCCGG 61.786 68.421 0.00 0.00 0.00 5.14
1482 1525 7.750229 ACTTTTCATGAGATAGCTTCACAAA 57.250 32.000 0.00 0.00 0.00 2.83
1492 1535 3.844577 AGCTTCACAAATCACTCATGC 57.155 42.857 0.00 0.00 0.00 4.06
1495 1538 1.812235 TCACAAATCACTCATGCGCT 58.188 45.000 9.73 0.00 0.00 5.92
1508 1551 2.434884 GCGCTCTGCTGCCTGTAA 60.435 61.111 0.00 0.00 41.73 2.41
1517 1560 5.371115 TCTGCTGCCTGTAAAATGTAAAC 57.629 39.130 0.00 0.00 0.00 2.01
1539 1582 7.519032 AACTGGCTAATTTTGCTTACAAGTA 57.481 32.000 2.97 0.00 37.04 2.24
1557 1600 3.960571 AGTACTGCTTTCATTGGCATCT 58.039 40.909 0.00 0.00 37.83 2.90
1561 1607 1.546923 TGCTTTCATTGGCATCTGTGG 59.453 47.619 0.00 0.00 33.23 4.17
1570 1616 0.889994 GGCATCTGTGGTTGATTGCA 59.110 50.000 0.00 0.00 0.00 4.08
1586 1632 2.605094 GCAACTTGCGAGTCACTGA 58.395 52.632 7.17 0.00 34.21 3.41
1595 1641 5.934625 ACTTGCGAGTCACTGAAATTTAGAT 59.065 36.000 0.00 0.00 0.00 1.98
1645 1691 6.605471 TCTGTTGTCCTAGACACATTGTAT 57.395 37.500 0.00 0.00 42.60 2.29
1655 1701 8.812972 TCCTAGACACATTGTATAGTTCAAGTT 58.187 33.333 7.10 0.00 39.74 2.66
1656 1702 8.873830 CCTAGACACATTGTATAGTTCAAGTTG 58.126 37.037 7.10 0.00 39.74 3.16
1658 1704 6.149474 AGACACATTGTATAGTTCAAGTTGGC 59.851 38.462 2.34 0.00 0.00 4.52
1685 1732 7.492020 TCATGGCATTTACTCAATTGTTATTGC 59.508 33.333 5.13 8.44 40.78 3.56
1770 1817 4.862902 TTTTCATCGCCTTCCATCAAAA 57.137 36.364 0.00 0.00 0.00 2.44
1775 1822 3.848272 TCGCCTTCCATCAAAATTCAC 57.152 42.857 0.00 0.00 0.00 3.18
1777 1824 2.262211 GCCTTCCATCAAAATTCACGC 58.738 47.619 0.00 0.00 0.00 5.34
1790 1837 7.909267 TCAAAATTCACGCTATATCTTCTGTG 58.091 34.615 0.00 0.00 0.00 3.66
1825 1872 1.614241 CGACGGGGGAACTCAAGGAT 61.614 60.000 0.00 0.00 0.00 3.24
2071 2118 3.172339 AGGAACTGCAGAGATGAGACTT 58.828 45.455 23.35 0.00 37.18 3.01
2092 2139 2.173782 TGTTGGTGCTTTGAGGGAAGTA 59.826 45.455 0.00 0.00 0.00 2.24
2161 2208 5.715439 AGGATGTTCTACCATTTGGATCA 57.285 39.130 3.01 0.00 38.94 2.92
2320 2367 8.700439 AGTGGGCTTATTTTTCTTAAACTGTA 57.300 30.769 0.00 0.00 0.00 2.74
2451 2499 5.096849 CGCTTCTTTAGGAGTACTCTGTTC 58.903 45.833 21.88 5.83 0.00 3.18
2665 2713 2.309136 ATCAAGGTTTTCAGGGTGGG 57.691 50.000 0.00 0.00 0.00 4.61
2722 2770 2.795175 ACACACACTTGTCTCCTACG 57.205 50.000 0.00 0.00 31.66 3.51
2993 4711 3.129638 TGGAAACCGGCTTTGCATATTAC 59.870 43.478 15.83 0.00 35.43 1.89
3007 4725 9.571810 CTTTGCATATTACAAATAGCAAGAACA 57.428 29.630 0.00 0.00 42.11 3.18
3090 4811 7.593825 ACAAATCATTTGCTCAGGTAAGTTAC 58.406 34.615 10.21 4.32 44.39 2.50
3137 4858 6.123045 AGGTGTTTACTTACTTGGTGCTAT 57.877 37.500 0.00 0.00 0.00 2.97
3300 5022 7.711772 AGCATGAGAGCAATTCTATGATATAGC 59.288 37.037 0.00 0.00 35.87 2.97
3442 5181 8.807948 AATATGTAGTGCAACCTAATGTTTCT 57.192 30.769 0.00 0.00 37.80 2.52
3443 5182 8.807948 ATATGTAGTGCAACCTAATGTTTCTT 57.192 30.769 0.00 0.00 37.80 2.52
3499 5238 2.230266 ACGTTTGCAAAGTGTTTCCTGT 59.770 40.909 13.26 0.00 0.00 4.00
3556 5295 8.081633 TGTTTTGAATACAGCAAGTAAAGATGG 58.918 33.333 0.00 0.00 36.05 3.51
3782 5521 1.464734 TTGTTTTTCACCAGGCACGA 58.535 45.000 0.00 0.00 0.00 4.35
3788 5527 1.118965 TTCACCAGGCACGAGGAAGA 61.119 55.000 0.00 0.00 32.83 2.87
3976 5717 7.064866 GCCCTACCTAACCCAAATTTATTACT 58.935 38.462 0.00 0.00 0.00 2.24
3982 5723 7.185856 ACCTAACCCAAATTTATTACTCCCTCT 59.814 37.037 0.00 0.00 0.00 3.69
4022 5763 8.335356 TGTCGCTGCTTTAGACAAATTAATATC 58.665 33.333 5.76 0.00 41.30 1.63
4028 5769 9.554395 TGCTTTAGACAAATTAATATCGATCCA 57.446 29.630 0.00 0.00 0.00 3.41
4128 5870 6.002704 AGTGGCATTTCTCATGGATAGAATC 58.997 40.000 0.00 0.00 33.17 2.52
4148 5890 7.641249 AGAATCTTCTCTGGATTTTTGGATCT 58.359 34.615 0.00 0.00 34.09 2.75
4157 5899 8.964476 TCTGGATTTTTGGATCTAATACAGTC 57.036 34.615 15.63 3.14 39.91 3.51
4158 5900 7.993183 TCTGGATTTTTGGATCTAATACAGTCC 59.007 37.037 15.63 9.71 39.91 3.85
4198 5940 4.879197 ATCTGAATGCATATCTGGTCGA 57.121 40.909 0.00 0.00 0.00 4.20
4600 6342 6.013379 TGGTAGCCCATTCATATAGAAGAAGG 60.013 42.308 0.00 0.00 40.15 3.46
4701 6443 6.288294 CCCGAGAACTTGGTTATGATATGAA 58.712 40.000 7.26 0.00 31.98 2.57
4702 6444 6.425114 CCCGAGAACTTGGTTATGATATGAAG 59.575 42.308 7.26 0.00 31.98 3.02
4741 6483 6.632035 GTCTCGTGTATCTTACAGGTATTTCG 59.368 42.308 7.11 0.00 43.12 3.46
4766 6508 3.629398 AGAAAGTTTCAGAGTTGCTGTGG 59.371 43.478 17.65 0.00 45.14 4.17
4846 6588 2.378547 TCTTTATTCCCTGGCTGTGGTT 59.621 45.455 0.00 0.00 0.00 3.67
4857 6599 1.026718 GCTGTGGTTGCCGCTATCTT 61.027 55.000 0.30 0.00 34.70 2.40
4875 6617 8.376203 CGCTATCTTCATTTCATATTTCTACCG 58.624 37.037 0.00 0.00 0.00 4.02
4899 6641 2.076863 CGTTCCAATCAAGGACACCTC 58.923 52.381 0.00 0.00 37.42 3.85
4903 6645 5.501156 GTTCCAATCAAGGACACCTCTTAT 58.499 41.667 0.00 0.00 37.42 1.73
4922 6664 7.333423 CCTCTTATCCATTCAACTTGTTAACGA 59.667 37.037 0.26 0.00 0.00 3.85
4946 6688 7.515841 CGACATGTGTTTTCTCTATGCATAGTC 60.516 40.741 28.51 15.79 0.00 2.59
5137 6879 4.063529 CGCTTGACAGGGCAAGAA 57.936 55.556 18.76 0.00 46.31 2.52
5291 7033 0.391927 TGGGAAATCGCCTTACACGG 60.392 55.000 0.00 0.00 0.00 4.94
5316 7058 5.069781 CACTGGAAAATTTTGTAACCCCTCA 59.930 40.000 8.47 0.00 0.00 3.86
5760 7521 2.738643 CGTGCATTACTCCGGAGATTGT 60.739 50.000 37.69 18.71 0.00 2.71
5851 7617 9.793252 TTAAACTAAATACATACTCACTCCGTC 57.207 33.333 0.00 0.00 0.00 4.79
5852 7618 6.388435 ACTAAATACATACTCACTCCGTCC 57.612 41.667 0.00 0.00 0.00 4.79
5853 7619 4.667519 AAATACATACTCACTCCGTCCC 57.332 45.455 0.00 0.00 0.00 4.46
5854 7620 2.812836 TACATACTCACTCCGTCCCA 57.187 50.000 0.00 0.00 0.00 4.37
5855 7621 1.933021 ACATACTCACTCCGTCCCAA 58.067 50.000 0.00 0.00 0.00 4.12
5856 7622 2.253610 ACATACTCACTCCGTCCCAAA 58.746 47.619 0.00 0.00 0.00 3.28
5857 7623 2.635915 ACATACTCACTCCGTCCCAAAA 59.364 45.455 0.00 0.00 0.00 2.44
5858 7624 3.263425 ACATACTCACTCCGTCCCAAAAT 59.737 43.478 0.00 0.00 0.00 1.82
5859 7625 4.468510 ACATACTCACTCCGTCCCAAAATA 59.531 41.667 0.00 0.00 0.00 1.40
5860 7626 5.046159 ACATACTCACTCCGTCCCAAAATAA 60.046 40.000 0.00 0.00 0.00 1.40
5861 7627 3.939066 ACTCACTCCGTCCCAAAATAAG 58.061 45.455 0.00 0.00 0.00 1.73
5862 7628 3.326880 ACTCACTCCGTCCCAAAATAAGT 59.673 43.478 0.00 0.00 0.00 2.24
5863 7629 3.670625 TCACTCCGTCCCAAAATAAGTG 58.329 45.455 0.00 0.00 35.20 3.16
5864 7630 3.325425 TCACTCCGTCCCAAAATAAGTGA 59.675 43.478 0.00 0.00 39.30 3.41
5865 7631 3.435671 CACTCCGTCCCAAAATAAGTGAC 59.564 47.826 0.00 0.00 35.76 3.67
5866 7632 3.326880 ACTCCGTCCCAAAATAAGTGACT 59.673 43.478 0.00 0.00 0.00 3.41
5867 7633 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5868 7634 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
5869 7635 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5870 7636 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5871 7637 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5872 7638 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5873 7639 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5874 7640 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5875 7641 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5876 7642 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5877 7643 8.576442 CCCAAAATAAGTGACTCAACTTTGTAT 58.424 33.333 0.00 0.00 40.77 2.29
5878 7644 9.965824 CCAAAATAAGTGACTCAACTTTGTATT 57.034 29.630 0.00 0.00 40.77 1.89
5902 7668 5.902051 AAGTTAGTACAAACTTGAGTCGC 57.098 39.130 1.41 0.00 45.60 5.19
5903 7669 5.197682 AGTTAGTACAAACTTGAGTCGCT 57.802 39.130 0.00 0.00 36.26 4.93
5904 7670 5.598769 AGTTAGTACAAACTTGAGTCGCTT 58.401 37.500 0.00 0.00 36.26 4.68
5905 7671 6.742109 AGTTAGTACAAACTTGAGTCGCTTA 58.258 36.000 0.00 0.00 36.26 3.09
5906 7672 7.376615 AGTTAGTACAAACTTGAGTCGCTTAT 58.623 34.615 0.00 0.00 36.26 1.73
5907 7673 7.871463 AGTTAGTACAAACTTGAGTCGCTTATT 59.129 33.333 0.00 0.00 36.26 1.40
5908 7674 8.493547 GTTAGTACAAACTTGAGTCGCTTATTT 58.506 33.333 0.00 0.00 37.15 1.40
5909 7675 7.492352 AGTACAAACTTGAGTCGCTTATTTT 57.508 32.000 0.00 0.00 29.00 1.82
5910 7676 7.352739 AGTACAAACTTGAGTCGCTTATTTTG 58.647 34.615 0.00 0.00 29.00 2.44
5911 7677 5.519722 ACAAACTTGAGTCGCTTATTTTGG 58.480 37.500 0.00 0.00 0.00 3.28
5912 7678 3.831715 ACTTGAGTCGCTTATTTTGGC 57.168 42.857 0.00 0.00 0.00 4.52
5913 7679 3.146066 ACTTGAGTCGCTTATTTTGGCA 58.854 40.909 0.00 0.00 0.00 4.92
5914 7680 3.058224 ACTTGAGTCGCTTATTTTGGCAC 60.058 43.478 0.00 0.00 0.00 5.01
5915 7681 1.463056 TGAGTCGCTTATTTTGGCACG 59.537 47.619 0.00 0.00 0.00 5.34
5916 7682 0.802494 AGTCGCTTATTTTGGCACGG 59.198 50.000 0.00 0.00 0.00 4.94
5917 7683 0.800012 GTCGCTTATTTTGGCACGGA 59.200 50.000 0.00 0.00 0.00 4.69
5918 7684 1.198178 GTCGCTTATTTTGGCACGGAA 59.802 47.619 0.00 0.00 0.00 4.30
5919 7685 1.466950 TCGCTTATTTTGGCACGGAAG 59.533 47.619 0.00 0.00 0.00 3.46
5920 7686 1.467374 CGCTTATTTTGGCACGGAAGG 60.467 52.381 0.00 0.00 0.00 3.46
5921 7687 1.816224 GCTTATTTTGGCACGGAAGGA 59.184 47.619 0.00 0.00 0.00 3.36
5922 7688 2.159379 GCTTATTTTGGCACGGAAGGAG 60.159 50.000 0.00 0.00 0.00 3.69
5923 7689 2.871096 TATTTTGGCACGGAAGGAGT 57.129 45.000 0.00 0.00 0.00 3.85
5924 7690 2.871096 ATTTTGGCACGGAAGGAGTA 57.129 45.000 0.00 0.00 0.00 2.59
5925 7691 2.871096 TTTTGGCACGGAAGGAGTAT 57.129 45.000 0.00 0.00 0.00 2.12
5926 7692 3.985019 TTTTGGCACGGAAGGAGTATA 57.015 42.857 0.00 0.00 0.00 1.47
5927 7693 3.985019 TTTGGCACGGAAGGAGTATAA 57.015 42.857 0.00 0.00 0.00 0.98
5928 7694 4.497291 TTTGGCACGGAAGGAGTATAAT 57.503 40.909 0.00 0.00 0.00 1.28
5929 7695 4.497291 TTGGCACGGAAGGAGTATAATT 57.503 40.909 0.00 0.00 0.00 1.40
5930 7696 4.497291 TGGCACGGAAGGAGTATAATTT 57.503 40.909 0.00 0.00 0.00 1.82
5931 7697 4.850680 TGGCACGGAAGGAGTATAATTTT 58.149 39.130 0.00 0.00 0.00 1.82
5932 7698 5.258051 TGGCACGGAAGGAGTATAATTTTT 58.742 37.500 0.00 0.00 0.00 1.94
5954 7720 8.674263 TTTTTGAATTGGACAATTGCATAGTT 57.326 26.923 14.42 0.00 40.77 2.24
5955 7721 7.655236 TTTGAATTGGACAATTGCATAGTTG 57.345 32.000 14.42 0.00 40.77 3.16
5956 7722 6.343716 TGAATTGGACAATTGCATAGTTGT 57.656 33.333 14.42 11.09 40.77 3.32
5957 7723 7.459795 TGAATTGGACAATTGCATAGTTGTA 57.540 32.000 14.42 0.07 40.77 2.41
5958 7724 7.537715 TGAATTGGACAATTGCATAGTTGTAG 58.462 34.615 14.42 0.00 40.77 2.74
5959 7725 7.392953 TGAATTGGACAATTGCATAGTTGTAGA 59.607 33.333 14.42 3.63 40.77 2.59
5960 7726 7.701539 ATTGGACAATTGCATAGTTGTAGAA 57.298 32.000 5.05 8.33 38.57 2.10
5961 7727 7.701539 TTGGACAATTGCATAGTTGTAGAAT 57.298 32.000 5.05 0.00 38.57 2.40
5962 7728 8.800370 TTGGACAATTGCATAGTTGTAGAATA 57.200 30.769 5.05 0.00 38.57 1.75
5963 7729 8.978874 TGGACAATTGCATAGTTGTAGAATAT 57.021 30.769 5.05 0.00 38.57 1.28
5964 7730 9.407380 TGGACAATTGCATAGTTGTAGAATATT 57.593 29.630 5.05 0.00 38.57 1.28
5989 7755 6.947644 TTGAATATGAGTTGCATGCATAGT 57.052 33.333 23.37 14.86 37.87 2.12
5990 7756 6.308371 TGAATATGAGTTGCATGCATAGTG 57.692 37.500 23.37 0.00 37.87 2.74
5991 7757 4.761235 ATATGAGTTGCATGCATAGTGC 57.239 40.909 23.37 10.11 45.29 4.40
6003 7769 3.494045 GCATAGTGCAGGTTTTTCTCC 57.506 47.619 0.00 0.00 44.26 3.71
6004 7770 2.819608 GCATAGTGCAGGTTTTTCTCCA 59.180 45.455 0.00 0.00 44.26 3.86
6005 7771 3.445096 GCATAGTGCAGGTTTTTCTCCAT 59.555 43.478 0.00 0.00 44.26 3.41
6006 7772 4.676196 GCATAGTGCAGGTTTTTCTCCATG 60.676 45.833 0.00 0.00 44.26 3.66
6007 7773 1.615392 AGTGCAGGTTTTTCTCCATGC 59.385 47.619 0.00 0.00 33.27 4.06
6008 7774 0.597568 TGCAGGTTTTTCTCCATGCG 59.402 50.000 0.00 0.00 34.40 4.73
6009 7775 0.598065 GCAGGTTTTTCTCCATGCGT 59.402 50.000 0.00 0.00 0.00 5.24
6010 7776 1.810151 GCAGGTTTTTCTCCATGCGTA 59.190 47.619 0.00 0.00 0.00 4.42
6011 7777 2.423538 GCAGGTTTTTCTCCATGCGTAT 59.576 45.455 0.00 0.00 0.00 3.06
6012 7778 3.731867 GCAGGTTTTTCTCCATGCGTATG 60.732 47.826 6.50 6.50 0.00 2.39
6013 7779 2.423538 AGGTTTTTCTCCATGCGTATGC 59.576 45.455 8.12 0.00 43.20 3.14
6034 7800 3.678056 ATGATGGCATGATGAATTGGC 57.322 42.857 3.81 0.00 38.77 4.52
6039 7805 3.568443 TGGCATGATGAATTGGCATAGT 58.432 40.909 0.00 0.00 42.67 2.12
6040 7806 3.962063 TGGCATGATGAATTGGCATAGTT 59.038 39.130 0.00 0.00 42.67 2.24
6041 7807 4.202172 TGGCATGATGAATTGGCATAGTTG 60.202 41.667 0.00 0.00 42.67 3.16
6057 7823 6.603237 CATAGTTGCATATTGAAACGAGGA 57.397 37.500 0.00 0.00 40.84 3.71
6058 7824 6.653183 CATAGTTGCATATTGAAACGAGGAG 58.347 40.000 0.00 0.00 40.84 3.69
6059 7825 4.579869 AGTTGCATATTGAAACGAGGAGT 58.420 39.130 0.00 0.00 40.84 3.85
6060 7826 4.393062 AGTTGCATATTGAAACGAGGAGTG 59.607 41.667 0.00 0.00 40.84 3.51
6061 7827 2.677836 TGCATATTGAAACGAGGAGTGC 59.322 45.455 0.00 0.00 0.00 4.40
6062 7828 2.939103 GCATATTGAAACGAGGAGTGCT 59.061 45.455 0.00 0.00 0.00 4.40
6063 7829 4.119862 GCATATTGAAACGAGGAGTGCTA 58.880 43.478 0.00 0.00 0.00 3.49
6064 7830 4.025647 GCATATTGAAACGAGGAGTGCTAC 60.026 45.833 0.00 0.00 0.00 3.58
6065 7831 3.678056 ATTGAAACGAGGAGTGCTACA 57.322 42.857 0.00 0.00 0.00 2.74
6066 7832 2.433868 TGAAACGAGGAGTGCTACAC 57.566 50.000 0.00 0.00 34.10 2.90
6067 7833 1.684450 TGAAACGAGGAGTGCTACACA 59.316 47.619 0.00 0.00 36.74 3.72
6068 7834 2.288213 TGAAACGAGGAGTGCTACACAG 60.288 50.000 0.00 0.00 36.74 3.66
6077 7843 3.946907 GCTACACAGCCGACGTTT 58.053 55.556 0.00 0.00 42.37 3.60
6078 7844 2.231820 GCTACACAGCCGACGTTTT 58.768 52.632 0.00 0.00 42.37 2.43
6079 7845 0.584876 GCTACACAGCCGACGTTTTT 59.415 50.000 0.00 0.00 42.37 1.94
6080 7846 1.398071 GCTACACAGCCGACGTTTTTC 60.398 52.381 0.00 0.00 42.37 2.29
6081 7847 1.193874 CTACACAGCCGACGTTTTTCC 59.806 52.381 0.00 0.00 0.00 3.13
6082 7848 1.083015 CACAGCCGACGTTTTTCCG 60.083 57.895 0.00 0.00 0.00 4.30
6083 7849 1.227321 ACAGCCGACGTTTTTCCGA 60.227 52.632 0.00 0.00 0.00 4.55
6084 7850 1.203313 CAGCCGACGTTTTTCCGAC 59.797 57.895 0.00 0.00 0.00 4.79
6085 7851 1.957695 AGCCGACGTTTTTCCGACC 60.958 57.895 0.00 0.00 0.00 4.79
6086 7852 2.848310 CCGACGTTTTTCCGACCG 59.152 61.111 0.00 0.00 0.00 4.79
6087 7853 1.661197 CCGACGTTTTTCCGACCGA 60.661 57.895 0.00 0.00 32.53 4.69
6088 7854 1.010419 CCGACGTTTTTCCGACCGAT 61.010 55.000 0.00 0.00 32.53 4.18
6089 7855 0.092351 CGACGTTTTTCCGACCGATG 59.908 55.000 0.00 0.00 32.53 3.84
6090 7856 0.179233 GACGTTTTTCCGACCGATGC 60.179 55.000 0.00 0.00 0.00 3.91
6091 7857 1.225637 CGTTTTTCCGACCGATGCG 60.226 57.895 0.00 0.00 0.00 4.73
6092 7858 1.864176 GTTTTTCCGACCGATGCGT 59.136 52.632 0.00 0.00 0.00 5.24
6093 7859 0.452122 GTTTTTCCGACCGATGCGTG 60.452 55.000 0.00 0.00 0.00 5.34
6094 7860 2.177654 TTTTTCCGACCGATGCGTGC 62.178 55.000 0.00 0.00 0.00 5.34
6095 7861 3.867700 TTTCCGACCGATGCGTGCA 62.868 57.895 0.00 0.00 0.00 4.57
6099 7865 3.838795 GACCGATGCGTGCACGAC 61.839 66.667 41.19 30.17 43.02 4.34
6100 7866 4.656117 ACCGATGCGTGCACGACA 62.656 61.111 41.19 34.19 43.02 4.35
6101 7867 3.188100 CCGATGCGTGCACGACAT 61.188 61.111 41.19 36.66 43.02 3.06
6102 7868 2.739704 CCGATGCGTGCACGACATT 61.740 57.895 41.19 24.32 43.02 2.71
6103 7869 1.417577 CCGATGCGTGCACGACATTA 61.418 55.000 41.19 20.91 43.02 1.90
6104 7870 0.043907 CGATGCGTGCACGACATTAG 60.044 55.000 41.19 29.64 43.02 1.73
6105 7871 0.315382 GATGCGTGCACGACATTAGC 60.315 55.000 41.19 24.44 43.02 3.09
6106 7872 0.740868 ATGCGTGCACGACATTAGCT 60.741 50.000 41.19 19.47 43.02 3.32
6107 7873 0.109039 TGCGTGCACGACATTAGCTA 60.109 50.000 41.19 12.60 43.02 3.32
6108 7874 0.996462 GCGTGCACGACATTAGCTAA 59.004 50.000 41.19 8.99 43.02 3.09
6109 7875 1.593006 GCGTGCACGACATTAGCTAAT 59.407 47.619 41.19 13.37 43.02 1.73
6110 7876 2.347661 GCGTGCACGACATTAGCTAATC 60.348 50.000 41.19 15.68 43.02 1.75
6111 7877 2.857748 CGTGCACGACATTAGCTAATCA 59.142 45.455 34.93 7.51 43.02 2.57
6112 7878 3.301835 CGTGCACGACATTAGCTAATCAC 60.302 47.826 34.93 17.01 43.02 3.06
6113 7879 3.865745 GTGCACGACATTAGCTAATCACT 59.134 43.478 16.21 1.98 0.00 3.41
6114 7880 3.865164 TGCACGACATTAGCTAATCACTG 59.135 43.478 16.21 9.43 0.00 3.66
6115 7881 3.865745 GCACGACATTAGCTAATCACTGT 59.134 43.478 16.21 12.63 0.00 3.55
6116 7882 4.330074 GCACGACATTAGCTAATCACTGTT 59.670 41.667 16.21 0.00 0.00 3.16
6117 7883 5.500931 GCACGACATTAGCTAATCACTGTTC 60.501 44.000 16.21 4.22 0.00 3.18
6118 7884 4.798907 ACGACATTAGCTAATCACTGTTCG 59.201 41.667 16.21 17.39 0.00 3.95
6119 7885 5.034797 CGACATTAGCTAATCACTGTTCGA 58.965 41.667 16.21 0.00 0.00 3.71
6120 7886 5.687730 CGACATTAGCTAATCACTGTTCGAT 59.312 40.000 16.21 0.00 0.00 3.59
6121 7887 6.345329 CGACATTAGCTAATCACTGTTCGATG 60.345 42.308 16.21 5.02 0.00 3.84
6122 7888 6.573434 ACATTAGCTAATCACTGTTCGATGA 58.427 36.000 16.21 0.00 0.00 2.92
6123 7889 7.041721 ACATTAGCTAATCACTGTTCGATGAA 58.958 34.615 16.21 0.00 0.00 2.57
6124 7890 7.549134 ACATTAGCTAATCACTGTTCGATGAAA 59.451 33.333 16.21 0.00 0.00 2.69
6125 7891 5.786401 AGCTAATCACTGTTCGATGAAAC 57.214 39.130 0.00 0.00 0.00 2.78
6126 7892 4.631813 AGCTAATCACTGTTCGATGAAACC 59.368 41.667 0.00 0.00 0.00 3.27
6127 7893 4.201822 GCTAATCACTGTTCGATGAAACCC 60.202 45.833 0.00 0.00 0.00 4.11
6128 7894 2.178912 TCACTGTTCGATGAAACCCC 57.821 50.000 0.00 0.00 0.00 4.95
6129 7895 1.697432 TCACTGTTCGATGAAACCCCT 59.303 47.619 0.00 0.00 0.00 4.79
6130 7896 2.076863 CACTGTTCGATGAAACCCCTC 58.923 52.381 0.00 0.00 0.00 4.30
6131 7897 1.978580 ACTGTTCGATGAAACCCCTCT 59.021 47.619 0.00 0.00 0.00 3.69
6132 7898 3.056107 CACTGTTCGATGAAACCCCTCTA 60.056 47.826 0.00 0.00 0.00 2.43
6133 7899 3.195825 ACTGTTCGATGAAACCCCTCTAG 59.804 47.826 0.00 0.00 0.00 2.43
6134 7900 3.437213 TGTTCGATGAAACCCCTCTAGA 58.563 45.455 0.00 0.00 0.00 2.43
6135 7901 3.835978 TGTTCGATGAAACCCCTCTAGAA 59.164 43.478 0.00 0.00 0.00 2.10
6136 7902 4.081642 TGTTCGATGAAACCCCTCTAGAAG 60.082 45.833 0.00 0.00 0.00 2.85
6137 7903 3.709587 TCGATGAAACCCCTCTAGAAGT 58.290 45.455 0.00 0.00 0.00 3.01
6138 7904 4.863548 TCGATGAAACCCCTCTAGAAGTA 58.136 43.478 0.00 0.00 0.00 2.24
6139 7905 5.266788 TCGATGAAACCCCTCTAGAAGTAA 58.733 41.667 0.00 0.00 0.00 2.24
6140 7906 5.360144 TCGATGAAACCCCTCTAGAAGTAAG 59.640 44.000 0.00 0.00 0.00 2.34
6141 7907 5.452077 CGATGAAACCCCTCTAGAAGTAAGG 60.452 48.000 0.00 0.00 0.00 2.69
6142 7908 5.019657 TGAAACCCCTCTAGAAGTAAGGA 57.980 43.478 0.00 0.00 31.44 3.36
6143 7909 5.408824 TGAAACCCCTCTAGAAGTAAGGAA 58.591 41.667 0.00 0.00 31.44 3.36
6144 7910 5.247792 TGAAACCCCTCTAGAAGTAAGGAAC 59.752 44.000 0.00 0.00 31.44 3.62
6145 7911 3.363627 ACCCCTCTAGAAGTAAGGAACG 58.636 50.000 0.00 0.00 31.44 3.95
6146 7912 3.245550 ACCCCTCTAGAAGTAAGGAACGT 60.246 47.826 0.00 0.00 31.44 3.99
6147 7913 3.130693 CCCCTCTAGAAGTAAGGAACGTG 59.869 52.174 0.00 0.00 31.44 4.49
6148 7914 4.015084 CCCTCTAGAAGTAAGGAACGTGA 58.985 47.826 0.00 0.00 31.44 4.35
6149 7915 4.096682 CCCTCTAGAAGTAAGGAACGTGAG 59.903 50.000 0.00 0.00 31.44 3.51
6150 7916 4.942483 CCTCTAGAAGTAAGGAACGTGAGA 59.058 45.833 0.00 0.00 31.44 3.27
6151 7917 5.591067 CCTCTAGAAGTAAGGAACGTGAGAT 59.409 44.000 0.00 0.00 31.44 2.75
6152 7918 6.238538 CCTCTAGAAGTAAGGAACGTGAGATC 60.239 46.154 0.00 0.00 31.44 2.75
6161 7927 2.656085 GAACGTGAGATCCTAGCATCG 58.344 52.381 0.00 0.00 0.00 3.84
6162 7928 1.681538 ACGTGAGATCCTAGCATCGT 58.318 50.000 0.00 0.00 0.00 3.73
6163 7929 1.604755 ACGTGAGATCCTAGCATCGTC 59.395 52.381 0.00 0.00 0.00 4.20
6164 7930 1.068885 CGTGAGATCCTAGCATCGTCC 60.069 57.143 0.00 0.00 0.00 4.79
6165 7931 1.957177 GTGAGATCCTAGCATCGTCCA 59.043 52.381 0.00 0.00 0.00 4.02
6166 7932 2.030363 GTGAGATCCTAGCATCGTCCAG 60.030 54.545 0.00 0.00 0.00 3.86
6167 7933 1.543802 GAGATCCTAGCATCGTCCAGG 59.456 57.143 0.00 0.00 0.00 4.45
6168 7934 1.133325 AGATCCTAGCATCGTCCAGGT 60.133 52.381 0.00 0.00 0.00 4.00
6169 7935 1.000283 GATCCTAGCATCGTCCAGGTG 60.000 57.143 0.00 0.00 0.00 4.00
6170 7936 1.043116 TCCTAGCATCGTCCAGGTGG 61.043 60.000 0.00 0.00 0.00 4.61
6171 7937 1.330655 CCTAGCATCGTCCAGGTGGT 61.331 60.000 0.00 0.00 44.87 4.16
6172 7938 0.179100 CTAGCATCGTCCAGGTGGTG 60.179 60.000 0.00 0.00 42.42 4.17
6173 7939 0.613572 TAGCATCGTCCAGGTGGTGA 60.614 55.000 0.00 0.00 42.42 4.02
6174 7940 1.741770 GCATCGTCCAGGTGGTGAC 60.742 63.158 0.00 0.00 36.34 3.67
6177 7943 3.357919 CGTCCAGGTGGTGACGTA 58.642 61.111 4.04 0.00 46.83 3.57
6178 7944 1.080974 CGTCCAGGTGGTGACGTAC 60.081 63.158 4.04 0.00 46.83 3.67
6179 7945 1.798234 CGTCCAGGTGGTGACGTACA 61.798 60.000 4.04 0.00 46.83 2.90
6180 7946 0.606604 GTCCAGGTGGTGACGTACAT 59.393 55.000 0.00 0.00 36.34 2.29
6181 7947 1.820519 GTCCAGGTGGTGACGTACATA 59.179 52.381 0.00 0.00 36.34 2.29
6182 7948 2.231964 GTCCAGGTGGTGACGTACATAA 59.768 50.000 0.00 0.00 36.34 1.90
6183 7949 2.898612 TCCAGGTGGTGACGTACATAAA 59.101 45.455 0.00 0.00 36.34 1.40
6184 7950 3.324268 TCCAGGTGGTGACGTACATAAAA 59.676 43.478 0.00 0.00 36.34 1.52
6185 7951 3.434299 CCAGGTGGTGACGTACATAAAAC 59.566 47.826 0.00 0.00 0.00 2.43
6186 7952 4.059511 CAGGTGGTGACGTACATAAAACA 58.940 43.478 0.00 0.00 0.00 2.83
6187 7953 4.693566 CAGGTGGTGACGTACATAAAACAT 59.306 41.667 0.00 0.00 0.00 2.71
6188 7954 4.933400 AGGTGGTGACGTACATAAAACATC 59.067 41.667 0.00 0.00 0.00 3.06
6189 7955 4.201647 GGTGGTGACGTACATAAAACATCG 60.202 45.833 0.00 0.00 0.00 3.84
6190 7956 4.386652 GTGGTGACGTACATAAAACATCGT 59.613 41.667 0.00 0.00 0.00 3.73
6191 7957 4.386350 TGGTGACGTACATAAAACATCGTG 59.614 41.667 0.00 0.00 0.00 4.35
6192 7958 4.386652 GGTGACGTACATAAAACATCGTGT 59.613 41.667 0.00 0.00 0.00 4.49
6193 7959 5.302711 GTGACGTACATAAAACATCGTGTG 58.697 41.667 0.00 0.00 0.00 3.82
6194 7960 4.983538 TGACGTACATAAAACATCGTGTGT 59.016 37.500 0.00 0.00 44.84 3.72
6195 7961 5.107798 TGACGTACATAAAACATCGTGTGTG 60.108 40.000 0.00 0.00 41.14 3.82
6196 7962 4.983538 ACGTACATAAAACATCGTGTGTGA 59.016 37.500 0.00 0.00 41.14 3.58
6197 7963 5.462729 ACGTACATAAAACATCGTGTGTGAA 59.537 36.000 0.00 0.00 41.14 3.18
6198 7964 6.007079 CGTACATAAAACATCGTGTGTGAAG 58.993 40.000 0.00 0.00 41.14 3.02
6199 7965 6.346279 CGTACATAAAACATCGTGTGTGAAGT 60.346 38.462 0.00 0.00 41.14 3.01
6200 7966 5.747565 ACATAAAACATCGTGTGTGAAGTG 58.252 37.500 0.00 0.00 41.14 3.16
6201 7967 2.755836 AAACATCGTGTGTGAAGTGC 57.244 45.000 0.00 0.00 41.14 4.40
6202 7968 1.953559 AACATCGTGTGTGAAGTGCT 58.046 45.000 0.00 0.00 41.14 4.40
6203 7969 2.812358 ACATCGTGTGTGAAGTGCTA 57.188 45.000 0.00 0.00 40.28 3.49
6204 7970 2.404215 ACATCGTGTGTGAAGTGCTAC 58.596 47.619 0.00 0.00 40.28 3.58
6205 7971 1.386748 CATCGTGTGTGAAGTGCTACG 59.613 52.381 0.00 0.00 0.00 3.51
6206 7972 0.937699 TCGTGTGTGAAGTGCTACGC 60.938 55.000 0.00 0.00 0.00 4.42
6207 7973 1.212455 CGTGTGTGAAGTGCTACGCA 61.212 55.000 0.00 0.00 35.19 5.24
6208 7974 0.508641 GTGTGTGAAGTGCTACGCAG 59.491 55.000 0.00 0.00 40.08 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 289 1.538135 AAGGGTAAGGCGGTGGTCT 60.538 57.895 0.00 0.00 0.00 3.85
483 485 1.451387 GACCCGTTGGATGGCGATT 60.451 57.895 0.00 0.00 34.81 3.34
812 826 7.381766 TCTGACATCGATTTCATCAAAATGT 57.618 32.000 14.31 0.00 37.70 2.71
813 827 8.581263 GTTTCTGACATCGATTTCATCAAAATG 58.419 33.333 14.31 2.11 37.70 2.32
814 828 7.482743 CGTTTCTGACATCGATTTCATCAAAAT 59.517 33.333 14.31 0.00 40.34 1.82
820 834 3.242091 CGCGTTTCTGACATCGATTTCAT 60.242 43.478 14.31 0.00 0.00 2.57
988 1004 0.179134 GAGTTCATGGCGACGCTAGT 60.179 55.000 20.77 2.97 0.00 2.57
1176 1216 2.676121 TCCGAGAACGCCGGGTTA 60.676 61.111 2.18 0.00 46.47 2.85
1353 1393 2.388232 CCGAAAACGAAGCCTCCGG 61.388 63.158 0.00 0.00 0.00 5.14
1464 1507 6.537660 TGAGTGATTTGTGAAGCTATCTCATG 59.462 38.462 0.00 0.00 32.00 3.07
1482 1525 0.810426 CAGCAGAGCGCATGAGTGAT 60.810 55.000 11.47 0.00 46.13 3.06
1492 1535 1.089920 ATTTTACAGGCAGCAGAGCG 58.910 50.000 0.00 0.00 34.64 5.03
1495 1538 5.048782 CAGTTTACATTTTACAGGCAGCAGA 60.049 40.000 0.00 0.00 0.00 4.26
1508 1551 9.203421 GTAAGCAAAATTAGCCAGTTTACATTT 57.797 29.630 0.00 0.00 0.00 2.32
1517 1560 7.023575 CAGTACTTGTAAGCAAAATTAGCCAG 58.976 38.462 0.00 0.00 33.73 4.85
1539 1582 2.230508 CACAGATGCCAATGAAAGCAGT 59.769 45.455 0.00 0.00 43.38 4.40
1570 1616 4.900635 AAATTTCAGTGACTCGCAAGTT 57.099 36.364 0.00 0.00 35.28 2.66
1581 1627 5.921976 TGCAGCAAACATCTAAATTTCAGTG 59.078 36.000 0.00 0.00 0.00 3.66
1586 1632 6.643770 CAGACTTGCAGCAAACATCTAAATTT 59.356 34.615 9.65 0.00 0.00 1.82
1595 1641 1.001048 GCATCAGACTTGCAGCAAACA 60.001 47.619 9.65 0.00 39.90 2.83
1645 1691 2.224744 TGCCATGAGCCAACTTGAACTA 60.225 45.455 0.00 0.00 42.71 2.24
1655 1701 2.804986 TGAGTAAATGCCATGAGCCA 57.195 45.000 0.00 0.00 42.71 4.75
1656 1702 4.142093 ACAATTGAGTAAATGCCATGAGCC 60.142 41.667 13.59 0.00 42.71 4.70
1658 1704 9.027129 CAATAACAATTGAGTAAATGCCATGAG 57.973 33.333 13.59 0.00 33.55 2.90
1770 1817 6.149129 TCACACAGAAGATATAGCGTGAAT 57.851 37.500 0.00 0.00 0.00 2.57
1775 1822 5.582550 TGAGTTCACACAGAAGATATAGCG 58.417 41.667 0.00 0.00 36.78 4.26
1777 1824 7.978414 ACACATGAGTTCACACAGAAGATATAG 59.022 37.037 0.00 0.00 36.78 1.31
1790 1837 1.649171 CGTCGCTACACATGAGTTCAC 59.351 52.381 0.00 0.00 0.00 3.18
1825 1872 2.427320 GCACTGGACACTGGCTCA 59.573 61.111 0.00 0.00 0.00 4.26
1831 1878 1.227764 CAGCTGTGCACTGGACACT 60.228 57.895 23.15 10.22 38.86 3.55
2071 2118 1.064017 ACTTCCCTCAAAGCACCAACA 60.064 47.619 0.00 0.00 0.00 3.33
2092 2139 1.549203 CTAAATGGCCACCAGCAAGT 58.451 50.000 8.16 0.00 46.50 3.16
2357 2405 0.329434 AATTGGGGGAGGGCCTGATA 60.329 55.000 12.95 0.00 0.00 2.15
2451 2499 3.849953 GCTCTAACCGCCGCAACG 61.850 66.667 0.00 0.00 0.00 4.10
2665 2713 3.205784 AGCATCTGCCCTTCTGTTATC 57.794 47.619 0.00 0.00 43.38 1.75
2722 2770 1.892474 TCCAATAGTGTTTTGGCCTGC 59.108 47.619 3.32 0.00 42.79 4.85
2771 2819 7.696453 CCAGCAGTAAAATATAAAAGGTTGTCG 59.304 37.037 0.00 0.00 0.00 4.35
3090 4811 2.797156 GCATGCAAGACGAGTATACCAG 59.203 50.000 14.21 0.00 0.00 4.00
3137 4858 6.152154 TGAGCCCGATAATCGAATATCTACAA 59.848 38.462 16.45 0.00 43.74 2.41
3442 5181 8.958119 ACTGACAGTCAACTTACTATCAAAAA 57.042 30.769 1.07 0.00 32.76 1.94
3443 5182 8.958119 AACTGACAGTCAACTTACTATCAAAA 57.042 30.769 8.93 0.00 32.76 2.44
3782 5521 2.641815 AGCAACCATTGACTCTCTTCCT 59.358 45.455 0.00 0.00 0.00 3.36
3788 5527 3.446442 AATCCAGCAACCATTGACTCT 57.554 42.857 0.00 0.00 0.00 3.24
3946 5687 0.325602 TGGGTTAGGTAGGGCAAACG 59.674 55.000 0.00 0.00 0.00 3.60
3976 5717 6.701340 CGACAATTAATATGGATCAGAGGGA 58.299 40.000 0.00 0.00 0.00 4.20
3982 5723 5.308014 AGCAGCGACAATTAATATGGATCA 58.692 37.500 0.00 0.00 0.00 2.92
4022 5763 9.489084 TCACATAAATAATACTCCTTTGGATCG 57.511 33.333 0.00 0.00 0.00 3.69
4128 5870 9.618890 TGTATTAGATCCAAAAATCCAGAGAAG 57.381 33.333 0.00 0.00 0.00 2.85
4148 5890 7.409408 AGAATAGAGGGAGAGGACTGTATTA 57.591 40.000 0.00 0.00 34.51 0.98
4157 5899 7.237982 TCAGATAAGAAGAATAGAGGGAGAGG 58.762 42.308 0.00 0.00 0.00 3.69
4158 5900 8.704849 TTCAGATAAGAAGAATAGAGGGAGAG 57.295 38.462 0.00 0.00 0.00 3.20
4701 6443 0.607620 GAGACAAGCTCAGACTGGCT 59.392 55.000 11.36 11.36 43.38 4.75
4702 6444 0.735632 CGAGACAAGCTCAGACTGGC 60.736 60.000 1.81 5.25 44.15 4.85
4741 6483 4.813697 ACAGCAACTCTGAAACTTTCTCTC 59.186 41.667 3.22 0.00 45.72 3.20
4750 6492 1.881973 GCATCCACAGCAACTCTGAAA 59.118 47.619 0.00 0.00 45.72 2.69
4766 6508 3.149196 TGAAACCAAGTTCCTGAGCATC 58.851 45.455 0.00 0.00 0.00 3.91
4830 6572 1.607467 GCAACCACAGCCAGGGAAT 60.607 57.895 0.00 0.00 0.00 3.01
4846 6588 6.712095 AGAAATATGAAATGAAGATAGCGGCA 59.288 34.615 1.45 0.00 0.00 5.69
4857 6599 3.496884 GCGGCGGTAGAAATATGAAATGA 59.503 43.478 9.78 0.00 0.00 2.57
4875 6617 2.038269 TCCTTGATTGGAACGCGGC 61.038 57.895 12.47 0.92 32.39 6.53
4899 6641 7.802738 TGTCGTTAACAAGTTGAATGGATAAG 58.197 34.615 10.54 0.00 34.03 1.73
4903 6645 5.529430 ACATGTCGTTAACAAGTTGAATGGA 59.471 36.000 10.54 0.00 42.37 3.41
4922 6664 6.256539 CGACTATGCATAGAGAAAACACATGT 59.743 38.462 34.86 12.60 34.50 3.21
5137 6879 0.036765 TTACCGCTGTCGATGGCTTT 60.037 50.000 10.07 1.23 38.10 3.51
5291 7033 4.062293 GGGGTTACAAAATTTTCCAGTGC 58.938 43.478 0.00 0.00 0.00 4.40
5316 7058 4.161189 CCTTCTCAGTGACACTACCATGAT 59.839 45.833 8.02 0.00 0.00 2.45
5493 7252 5.067674 CCTCAACAAACTGTGATTCCTTTCA 59.932 40.000 0.00 0.00 0.00 2.69
5558 7317 1.068281 CCCTCCTCTGATGACATGACG 59.932 57.143 0.00 0.00 0.00 4.35
5733 7494 2.795175 CGGAGTAATGCACGGAGTAT 57.205 50.000 0.00 0.00 41.61 2.12
5845 7611 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5846 7612 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
5847 7613 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
5848 7614 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
5849 7615 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5850 7616 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
5851 7617 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
5852 7618 9.965824 AATACAAAGTTGAGTCACTTATTTTGG 57.034 29.630 12.94 0.78 35.87 3.28
5876 7642 8.493547 GCGACTCAAGTTTGTACTAACTTTAAT 58.506 33.333 26.14 13.48 43.85 1.40
5877 7643 7.707893 AGCGACTCAAGTTTGTACTAACTTTAA 59.292 33.333 26.14 18.19 43.85 1.52
5878 7644 7.205297 AGCGACTCAAGTTTGTACTAACTTTA 58.795 34.615 26.14 19.67 43.85 1.85
5879 7645 6.047231 AGCGACTCAAGTTTGTACTAACTTT 58.953 36.000 26.14 15.97 43.85 2.66
5880 7646 5.598769 AGCGACTCAAGTTTGTACTAACTT 58.401 37.500 23.96 23.96 46.42 2.66
5881 7647 5.197682 AGCGACTCAAGTTTGTACTAACT 57.802 39.130 15.68 15.68 39.97 2.24
5882 7648 5.902051 AAGCGACTCAAGTTTGTACTAAC 57.098 39.130 11.62 11.62 33.17 2.34
5883 7649 8.597662 AAATAAGCGACTCAAGTTTGTACTAA 57.402 30.769 0.00 0.00 33.17 2.24
5884 7650 8.492748 CAAAATAAGCGACTCAAGTTTGTACTA 58.507 33.333 0.00 0.00 33.17 1.82
5885 7651 7.352739 CAAAATAAGCGACTCAAGTTTGTACT 58.647 34.615 0.00 0.00 35.68 2.73
5886 7652 6.577427 CCAAAATAAGCGACTCAAGTTTGTAC 59.423 38.462 0.00 0.00 0.00 2.90
5887 7653 6.664515 CCAAAATAAGCGACTCAAGTTTGTA 58.335 36.000 0.00 0.00 0.00 2.41
5888 7654 5.519722 CCAAAATAAGCGACTCAAGTTTGT 58.480 37.500 0.00 0.00 0.00 2.83
5889 7655 4.382754 GCCAAAATAAGCGACTCAAGTTTG 59.617 41.667 0.00 0.00 0.00 2.93
5890 7656 4.037446 TGCCAAAATAAGCGACTCAAGTTT 59.963 37.500 0.00 0.00 0.00 2.66
5891 7657 3.568007 TGCCAAAATAAGCGACTCAAGTT 59.432 39.130 0.00 0.00 0.00 2.66
5892 7658 3.058224 GTGCCAAAATAAGCGACTCAAGT 60.058 43.478 0.00 0.00 0.00 3.16
5893 7659 3.492313 GTGCCAAAATAAGCGACTCAAG 58.508 45.455 0.00 0.00 0.00 3.02
5894 7660 2.095969 CGTGCCAAAATAAGCGACTCAA 60.096 45.455 0.00 0.00 0.00 3.02
5895 7661 1.463056 CGTGCCAAAATAAGCGACTCA 59.537 47.619 0.00 0.00 0.00 3.41
5896 7662 1.202031 CCGTGCCAAAATAAGCGACTC 60.202 52.381 0.00 0.00 0.00 3.36
5897 7663 0.802494 CCGTGCCAAAATAAGCGACT 59.198 50.000 0.00 0.00 0.00 4.18
5898 7664 0.800012 TCCGTGCCAAAATAAGCGAC 59.200 50.000 0.00 0.00 0.00 5.19
5899 7665 1.466950 CTTCCGTGCCAAAATAAGCGA 59.533 47.619 0.00 0.00 0.00 4.93
5900 7666 1.467374 CCTTCCGTGCCAAAATAAGCG 60.467 52.381 0.00 0.00 0.00 4.68
5901 7667 1.816224 TCCTTCCGTGCCAAAATAAGC 59.184 47.619 0.00 0.00 0.00 3.09
5902 7668 3.081804 ACTCCTTCCGTGCCAAAATAAG 58.918 45.455 0.00 0.00 0.00 1.73
5903 7669 3.149005 ACTCCTTCCGTGCCAAAATAA 57.851 42.857 0.00 0.00 0.00 1.40
5904 7670 2.871096 ACTCCTTCCGTGCCAAAATA 57.129 45.000 0.00 0.00 0.00 1.40
5905 7671 2.871096 TACTCCTTCCGTGCCAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
5906 7672 2.871096 ATACTCCTTCCGTGCCAAAA 57.129 45.000 0.00 0.00 0.00 2.44
5907 7673 3.985019 TTATACTCCTTCCGTGCCAAA 57.015 42.857 0.00 0.00 0.00 3.28
5908 7674 4.497291 AATTATACTCCTTCCGTGCCAA 57.503 40.909 0.00 0.00 0.00 4.52
5909 7675 4.497291 AAATTATACTCCTTCCGTGCCA 57.503 40.909 0.00 0.00 0.00 4.92
5910 7676 5.830000 AAAAATTATACTCCTTCCGTGCC 57.170 39.130 0.00 0.00 0.00 5.01
5929 7695 8.557864 CAACTATGCAATTGTCCAATTCAAAAA 58.442 29.630 7.40 0.00 38.84 1.94
5930 7696 7.714377 ACAACTATGCAATTGTCCAATTCAAAA 59.286 29.630 7.40 0.00 38.84 2.44
5931 7697 7.215789 ACAACTATGCAATTGTCCAATTCAAA 58.784 30.769 7.40 0.00 38.84 2.69
5932 7698 6.757237 ACAACTATGCAATTGTCCAATTCAA 58.243 32.000 7.40 0.00 38.84 2.69
5933 7699 6.343716 ACAACTATGCAATTGTCCAATTCA 57.656 33.333 7.40 5.22 38.84 2.57
5934 7700 7.761409 TCTACAACTATGCAATTGTCCAATTC 58.239 34.615 15.27 0.31 38.84 2.17
5935 7701 7.701539 TCTACAACTATGCAATTGTCCAATT 57.298 32.000 15.27 0.00 41.33 2.32
5936 7702 7.701539 TTCTACAACTATGCAATTGTCCAAT 57.298 32.000 15.27 0.00 39.67 3.16
5937 7703 7.701539 ATTCTACAACTATGCAATTGTCCAA 57.298 32.000 15.27 10.80 39.67 3.53
5938 7704 8.978874 ATATTCTACAACTATGCAATTGTCCA 57.021 30.769 15.27 0.00 39.67 4.02
5963 7729 9.070179 ACTATGCATGCAACTCATATTCAATAA 57.930 29.630 26.68 0.00 33.19 1.40
5964 7730 8.508875 CACTATGCATGCAACTCATATTCAATA 58.491 33.333 26.68 6.55 33.19 1.90
5965 7731 7.368059 CACTATGCATGCAACTCATATTCAAT 58.632 34.615 26.68 5.59 33.19 2.57
5966 7732 6.731164 CACTATGCATGCAACTCATATTCAA 58.269 36.000 26.68 0.00 33.19 2.69
5967 7733 5.278120 GCACTATGCATGCAACTCATATTCA 60.278 40.000 26.68 0.00 44.26 2.57
5968 7734 5.152097 GCACTATGCATGCAACTCATATTC 58.848 41.667 26.68 4.31 44.26 1.75
5969 7735 5.117355 GCACTATGCATGCAACTCATATT 57.883 39.130 26.68 8.03 44.26 1.28
5970 7736 4.761235 GCACTATGCATGCAACTCATAT 57.239 40.909 26.68 8.86 44.26 1.78
5983 7749 2.819608 TGGAGAAAAACCTGCACTATGC 59.180 45.455 0.00 0.00 45.29 3.14
5984 7750 4.676196 GCATGGAGAAAAACCTGCACTATG 60.676 45.833 0.00 0.00 37.33 2.23
5985 7751 3.445096 GCATGGAGAAAAACCTGCACTAT 59.555 43.478 0.00 0.00 37.33 2.12
5986 7752 2.819608 GCATGGAGAAAAACCTGCACTA 59.180 45.455 0.00 0.00 37.33 2.74
5987 7753 1.615392 GCATGGAGAAAAACCTGCACT 59.385 47.619 0.00 0.00 37.33 4.40
5988 7754 1.666888 CGCATGGAGAAAAACCTGCAC 60.667 52.381 0.00 0.00 37.33 4.57
5989 7755 0.597568 CGCATGGAGAAAAACCTGCA 59.402 50.000 0.00 0.00 38.83 4.41
5990 7756 0.598065 ACGCATGGAGAAAAACCTGC 59.402 50.000 0.00 0.00 0.00 4.85
5991 7757 3.731867 GCATACGCATGGAGAAAAACCTG 60.732 47.826 0.00 0.00 38.36 4.00
5992 7758 2.423538 GCATACGCATGGAGAAAAACCT 59.576 45.455 0.00 0.00 38.36 3.50
5993 7759 2.163412 TGCATACGCATGGAGAAAAACC 59.837 45.455 0.00 0.00 45.36 3.27
5994 7760 3.485947 TGCATACGCATGGAGAAAAAC 57.514 42.857 0.00 0.00 45.36 2.43
6014 7780 2.969262 TGCCAATTCATCATGCCATCAT 59.031 40.909 0.00 0.00 0.00 2.45
6015 7781 2.389715 TGCCAATTCATCATGCCATCA 58.610 42.857 0.00 0.00 0.00 3.07
6016 7782 3.678056 ATGCCAATTCATCATGCCATC 57.322 42.857 0.00 0.00 0.00 3.51
6017 7783 4.157246 ACTATGCCAATTCATCATGCCAT 58.843 39.130 0.00 0.00 0.00 4.40
6018 7784 3.568443 ACTATGCCAATTCATCATGCCA 58.432 40.909 0.00 0.00 0.00 4.92
6019 7785 4.304110 CAACTATGCCAATTCATCATGCC 58.696 43.478 0.00 0.00 0.00 4.40
6034 7800 6.258727 ACTCCTCGTTTCAATATGCAACTATG 59.741 38.462 0.00 0.00 0.00 2.23
6035 7801 6.258727 CACTCCTCGTTTCAATATGCAACTAT 59.741 38.462 0.00 0.00 0.00 2.12
6036 7802 5.580691 CACTCCTCGTTTCAATATGCAACTA 59.419 40.000 0.00 0.00 0.00 2.24
6037 7803 4.393062 CACTCCTCGTTTCAATATGCAACT 59.607 41.667 0.00 0.00 0.00 3.16
6038 7804 4.651994 CACTCCTCGTTTCAATATGCAAC 58.348 43.478 0.00 0.00 0.00 4.17
6039 7805 3.126858 GCACTCCTCGTTTCAATATGCAA 59.873 43.478 0.00 0.00 0.00 4.08
6040 7806 2.677836 GCACTCCTCGTTTCAATATGCA 59.322 45.455 0.00 0.00 0.00 3.96
6041 7807 2.939103 AGCACTCCTCGTTTCAATATGC 59.061 45.455 0.00 0.00 0.00 3.14
6042 7808 5.005779 GTGTAGCACTCCTCGTTTCAATATG 59.994 44.000 0.00 0.00 0.00 1.78
6043 7809 5.109903 GTGTAGCACTCCTCGTTTCAATAT 58.890 41.667 0.00 0.00 0.00 1.28
6044 7810 4.021807 TGTGTAGCACTCCTCGTTTCAATA 60.022 41.667 0.90 0.00 35.11 1.90
6045 7811 3.244078 TGTGTAGCACTCCTCGTTTCAAT 60.244 43.478 0.90 0.00 35.11 2.57
6046 7812 2.101750 TGTGTAGCACTCCTCGTTTCAA 59.898 45.455 0.90 0.00 35.11 2.69
6047 7813 1.684450 TGTGTAGCACTCCTCGTTTCA 59.316 47.619 0.90 0.00 35.11 2.69
6048 7814 2.329379 CTGTGTAGCACTCCTCGTTTC 58.671 52.381 0.90 0.00 35.11 2.78
6049 7815 2.440539 CTGTGTAGCACTCCTCGTTT 57.559 50.000 0.90 0.00 35.11 3.60
6061 7827 1.193874 GGAAAAACGTCGGCTGTGTAG 59.806 52.381 0.00 0.00 0.00 2.74
6062 7828 1.219646 GGAAAAACGTCGGCTGTGTA 58.780 50.000 0.00 0.00 0.00 2.90
6063 7829 1.768112 CGGAAAAACGTCGGCTGTGT 61.768 55.000 0.00 0.00 0.00 3.72
6064 7830 1.083015 CGGAAAAACGTCGGCTGTG 60.083 57.895 0.00 0.00 0.00 3.66
6065 7831 1.227321 TCGGAAAAACGTCGGCTGT 60.227 52.632 0.00 0.00 34.94 4.40
6066 7832 1.203313 GTCGGAAAAACGTCGGCTG 59.797 57.895 0.00 0.00 34.94 4.85
6067 7833 1.957695 GGTCGGAAAAACGTCGGCT 60.958 57.895 0.00 0.00 34.94 5.52
6068 7834 2.552768 GGTCGGAAAAACGTCGGC 59.447 61.111 0.00 0.00 34.94 5.54
6069 7835 1.010419 ATCGGTCGGAAAAACGTCGG 61.010 55.000 0.00 0.00 34.51 4.79
6070 7836 0.092351 CATCGGTCGGAAAAACGTCG 59.908 55.000 0.00 0.00 34.82 5.12
6071 7837 0.179233 GCATCGGTCGGAAAAACGTC 60.179 55.000 0.00 0.00 34.94 4.34
6072 7838 1.864176 GCATCGGTCGGAAAAACGT 59.136 52.632 0.00 0.00 34.94 3.99
6073 7839 1.225637 CGCATCGGTCGGAAAAACG 60.226 57.895 0.00 0.00 0.00 3.60
6074 7840 0.452122 CACGCATCGGTCGGAAAAAC 60.452 55.000 0.00 0.00 0.00 2.43
6075 7841 1.863491 CACGCATCGGTCGGAAAAA 59.137 52.632 0.00 0.00 0.00 1.94
6076 7842 2.673114 GCACGCATCGGTCGGAAAA 61.673 57.895 0.00 0.00 0.00 2.29
6077 7843 3.115892 GCACGCATCGGTCGGAAA 61.116 61.111 0.00 0.00 0.00 3.13
6078 7844 4.365505 TGCACGCATCGGTCGGAA 62.366 61.111 0.00 0.00 0.00 4.30
6082 7848 3.838795 GTCGTGCACGCATCGGTC 61.839 66.667 33.63 13.20 39.60 4.79
6083 7849 3.932580 ATGTCGTGCACGCATCGGT 62.933 57.895 33.63 16.21 39.60 4.69
6084 7850 1.417577 TAATGTCGTGCACGCATCGG 61.418 55.000 33.29 13.55 39.60 4.18
6085 7851 0.043907 CTAATGTCGTGCACGCATCG 60.044 55.000 33.29 26.16 39.60 3.84
6086 7852 0.315382 GCTAATGTCGTGCACGCATC 60.315 55.000 33.29 25.71 39.60 3.91
6087 7853 0.740868 AGCTAATGTCGTGCACGCAT 60.741 50.000 33.63 31.60 39.60 4.73
6088 7854 0.109039 TAGCTAATGTCGTGCACGCA 60.109 50.000 33.63 30.93 39.60 5.24
6089 7855 0.996462 TTAGCTAATGTCGTGCACGC 59.004 50.000 33.63 26.73 39.60 5.34
6090 7856 2.857748 TGATTAGCTAATGTCGTGCACG 59.142 45.455 32.76 32.76 41.45 5.34
6091 7857 3.865745 AGTGATTAGCTAATGTCGTGCAC 59.134 43.478 23.51 20.72 0.00 4.57
6092 7858 3.865164 CAGTGATTAGCTAATGTCGTGCA 59.135 43.478 23.51 10.97 0.00 4.57
6093 7859 3.865745 ACAGTGATTAGCTAATGTCGTGC 59.134 43.478 23.51 8.49 0.00 5.34
6094 7860 5.275927 CGAACAGTGATTAGCTAATGTCGTG 60.276 44.000 23.51 15.84 0.00 4.35
6095 7861 4.798907 CGAACAGTGATTAGCTAATGTCGT 59.201 41.667 23.51 11.67 0.00 4.34
6096 7862 5.034797 TCGAACAGTGATTAGCTAATGTCG 58.965 41.667 23.51 18.48 0.00 4.35
6097 7863 6.697455 TCATCGAACAGTGATTAGCTAATGTC 59.303 38.462 23.51 14.79 0.00 3.06
6098 7864 6.573434 TCATCGAACAGTGATTAGCTAATGT 58.427 36.000 23.51 13.58 0.00 2.71
6099 7865 7.468922 TTCATCGAACAGTGATTAGCTAATG 57.531 36.000 23.51 12.92 0.00 1.90
6100 7866 7.011482 GGTTTCATCGAACAGTGATTAGCTAAT 59.989 37.037 18.92 18.92 0.00 1.73
6101 7867 6.312918 GGTTTCATCGAACAGTGATTAGCTAA 59.687 38.462 8.99 8.99 0.00 3.09
6102 7868 5.810587 GGTTTCATCGAACAGTGATTAGCTA 59.189 40.000 0.00 0.00 0.00 3.32
6103 7869 4.631813 GGTTTCATCGAACAGTGATTAGCT 59.368 41.667 0.00 0.00 0.00 3.32
6104 7870 4.201822 GGGTTTCATCGAACAGTGATTAGC 60.202 45.833 0.00 0.00 0.00 3.09
6105 7871 4.332819 GGGGTTTCATCGAACAGTGATTAG 59.667 45.833 0.00 0.00 0.00 1.73
6106 7872 4.019681 AGGGGTTTCATCGAACAGTGATTA 60.020 41.667 0.00 0.00 0.00 1.75
6107 7873 3.081804 GGGGTTTCATCGAACAGTGATT 58.918 45.455 0.00 0.00 0.00 2.57
6108 7874 2.305927 AGGGGTTTCATCGAACAGTGAT 59.694 45.455 0.00 0.00 0.00 3.06
6109 7875 1.697432 AGGGGTTTCATCGAACAGTGA 59.303 47.619 0.00 0.00 0.00 3.41
6110 7876 2.076863 GAGGGGTTTCATCGAACAGTG 58.923 52.381 0.00 0.00 0.00 3.66
6111 7877 1.978580 AGAGGGGTTTCATCGAACAGT 59.021 47.619 0.00 0.00 0.00 3.55
6112 7878 2.770164 AGAGGGGTTTCATCGAACAG 57.230 50.000 0.00 0.00 0.00 3.16
6113 7879 3.437213 TCTAGAGGGGTTTCATCGAACA 58.563 45.455 0.00 0.00 0.00 3.18
6114 7880 4.081586 ACTTCTAGAGGGGTTTCATCGAAC 60.082 45.833 6.82 0.00 0.00 3.95
6115 7881 4.094476 ACTTCTAGAGGGGTTTCATCGAA 58.906 43.478 6.82 0.00 0.00 3.71
6116 7882 3.709587 ACTTCTAGAGGGGTTTCATCGA 58.290 45.455 6.82 0.00 0.00 3.59
6117 7883 5.452077 CCTTACTTCTAGAGGGGTTTCATCG 60.452 48.000 6.82 0.00 0.00 3.84
6118 7884 5.661759 TCCTTACTTCTAGAGGGGTTTCATC 59.338 44.000 6.82 0.00 0.00 2.92
6119 7885 5.600749 TCCTTACTTCTAGAGGGGTTTCAT 58.399 41.667 6.82 0.00 0.00 2.57
6120 7886 5.019657 TCCTTACTTCTAGAGGGGTTTCA 57.980 43.478 6.82 0.00 0.00 2.69
6121 7887 5.624052 CGTTCCTTACTTCTAGAGGGGTTTC 60.624 48.000 6.82 0.00 0.00 2.78
6122 7888 4.222366 CGTTCCTTACTTCTAGAGGGGTTT 59.778 45.833 6.82 0.00 0.00 3.27
6123 7889 3.768215 CGTTCCTTACTTCTAGAGGGGTT 59.232 47.826 6.82 0.00 0.00 4.11
6124 7890 3.245550 ACGTTCCTTACTTCTAGAGGGGT 60.246 47.826 6.82 3.92 0.00 4.95
6125 7891 3.130693 CACGTTCCTTACTTCTAGAGGGG 59.869 52.174 6.82 0.00 0.00 4.79
6126 7892 4.015084 TCACGTTCCTTACTTCTAGAGGG 58.985 47.826 6.82 0.28 0.00 4.30
6127 7893 4.942483 TCTCACGTTCCTTACTTCTAGAGG 59.058 45.833 0.00 0.00 0.00 3.69
6128 7894 6.238538 GGATCTCACGTTCCTTACTTCTAGAG 60.239 46.154 0.00 0.00 0.00 2.43
6129 7895 5.589452 GGATCTCACGTTCCTTACTTCTAGA 59.411 44.000 0.00 0.00 0.00 2.43
6130 7896 5.591067 AGGATCTCACGTTCCTTACTTCTAG 59.409 44.000 0.45 0.00 39.36 2.43
6131 7897 5.507637 AGGATCTCACGTTCCTTACTTCTA 58.492 41.667 0.45 0.00 39.36 2.10
6132 7898 4.345854 AGGATCTCACGTTCCTTACTTCT 58.654 43.478 0.45 0.00 39.36 2.85
6133 7899 4.722361 AGGATCTCACGTTCCTTACTTC 57.278 45.455 0.45 0.00 39.36 3.01
6134 7900 4.098196 GCTAGGATCTCACGTTCCTTACTT 59.902 45.833 11.63 0.00 42.40 2.24
6135 7901 3.633065 GCTAGGATCTCACGTTCCTTACT 59.367 47.826 11.63 0.00 42.40 2.24
6136 7902 3.380637 TGCTAGGATCTCACGTTCCTTAC 59.619 47.826 11.63 5.63 42.40 2.34
6137 7903 3.628008 TGCTAGGATCTCACGTTCCTTA 58.372 45.455 11.63 0.00 42.40 2.69
6138 7904 2.457598 TGCTAGGATCTCACGTTCCTT 58.542 47.619 11.63 0.00 42.40 3.36
6139 7905 2.145397 TGCTAGGATCTCACGTTCCT 57.855 50.000 11.17 11.17 44.55 3.36
6140 7906 2.605823 CGATGCTAGGATCTCACGTTCC 60.606 54.545 20.42 0.00 0.00 3.62
6141 7907 2.033550 ACGATGCTAGGATCTCACGTTC 59.966 50.000 20.42 0.00 0.00 3.95
6142 7908 2.025155 ACGATGCTAGGATCTCACGTT 58.975 47.619 20.42 0.00 0.00 3.99
6143 7909 1.604755 GACGATGCTAGGATCTCACGT 59.395 52.381 20.42 14.29 35.53 4.49
6144 7910 1.068885 GGACGATGCTAGGATCTCACG 60.069 57.143 20.42 11.33 0.00 4.35
6145 7911 1.957177 TGGACGATGCTAGGATCTCAC 59.043 52.381 20.42 11.13 0.00 3.51
6146 7912 2.234143 CTGGACGATGCTAGGATCTCA 58.766 52.381 20.42 14.44 0.00 3.27
6147 7913 1.543802 CCTGGACGATGCTAGGATCTC 59.456 57.143 20.42 15.80 38.70 2.75
6148 7914 1.133325 ACCTGGACGATGCTAGGATCT 60.133 52.381 20.42 8.89 38.70 2.75
6149 7915 1.000283 CACCTGGACGATGCTAGGATC 60.000 57.143 13.90 13.90 38.70 3.36
6150 7916 1.043816 CACCTGGACGATGCTAGGAT 58.956 55.000 0.00 0.00 38.70 3.24
6151 7917 1.043116 CCACCTGGACGATGCTAGGA 61.043 60.000 0.00 0.00 38.70 2.94
6152 7918 1.330655 ACCACCTGGACGATGCTAGG 61.331 60.000 0.00 0.00 41.83 3.02
6153 7919 0.179100 CACCACCTGGACGATGCTAG 60.179 60.000 0.00 0.00 38.94 3.42
6154 7920 0.613572 TCACCACCTGGACGATGCTA 60.614 55.000 0.00 0.00 38.94 3.49
6155 7921 1.913262 TCACCACCTGGACGATGCT 60.913 57.895 0.00 0.00 38.94 3.79
6156 7922 1.741770 GTCACCACCTGGACGATGC 60.742 63.158 0.00 0.00 38.94 3.91
6157 7923 4.598257 GTCACCACCTGGACGATG 57.402 61.111 0.00 0.00 38.94 3.84
6161 7927 0.606604 ATGTACGTCACCACCTGGAC 59.393 55.000 0.00 0.00 38.94 4.02
6162 7928 2.219080 TATGTACGTCACCACCTGGA 57.781 50.000 0.00 0.00 38.94 3.86
6163 7929 3.322211 TTTATGTACGTCACCACCTGG 57.678 47.619 0.00 0.00 42.17 4.45
6164 7930 4.059511 TGTTTTATGTACGTCACCACCTG 58.940 43.478 0.00 0.00 0.00 4.00
6165 7931 4.339872 TGTTTTATGTACGTCACCACCT 57.660 40.909 0.00 0.00 0.00 4.00
6166 7932 4.201647 CGATGTTTTATGTACGTCACCACC 60.202 45.833 0.00 0.00 32.32 4.61
6167 7933 4.386652 ACGATGTTTTATGTACGTCACCAC 59.613 41.667 0.00 0.00 32.32 4.16
6168 7934 4.386350 CACGATGTTTTATGTACGTCACCA 59.614 41.667 0.00 0.00 32.32 4.17
6169 7935 4.386652 ACACGATGTTTTATGTACGTCACC 59.613 41.667 0.00 0.00 32.32 4.02
6170 7936 5.107760 ACACACGATGTTTTATGTACGTCAC 60.108 40.000 0.00 0.00 38.98 3.67
6171 7937 4.983538 ACACACGATGTTTTATGTACGTCA 59.016 37.500 0.00 0.00 38.98 4.35
6172 7938 5.117440 TCACACACGATGTTTTATGTACGTC 59.883 40.000 0.00 0.00 40.64 4.34
6173 7939 4.983538 TCACACACGATGTTTTATGTACGT 59.016 37.500 0.00 0.00 40.64 3.57
6174 7940 5.503689 TCACACACGATGTTTTATGTACG 57.496 39.130 0.00 0.00 40.64 3.67
6175 7941 6.790350 CACTTCACACACGATGTTTTATGTAC 59.210 38.462 0.00 0.00 40.64 2.90
6176 7942 6.565060 GCACTTCACACACGATGTTTTATGTA 60.565 38.462 0.00 0.00 40.64 2.29
6177 7943 5.747565 CACTTCACACACGATGTTTTATGT 58.252 37.500 0.00 0.00 40.64 2.29
6178 7944 4.612614 GCACTTCACACACGATGTTTTATG 59.387 41.667 0.00 0.00 40.64 1.90
6179 7945 4.515191 AGCACTTCACACACGATGTTTTAT 59.485 37.500 0.00 0.00 40.64 1.40
6180 7946 3.874543 AGCACTTCACACACGATGTTTTA 59.125 39.130 0.00 0.00 40.64 1.52
6181 7947 2.682856 AGCACTTCACACACGATGTTTT 59.317 40.909 0.00 0.00 40.64 2.43
6182 7948 2.288666 AGCACTTCACACACGATGTTT 58.711 42.857 0.00 0.00 40.64 2.83
6183 7949 1.953559 AGCACTTCACACACGATGTT 58.046 45.000 0.00 0.00 40.64 2.71
6184 7950 2.404215 GTAGCACTTCACACACGATGT 58.596 47.619 0.00 0.00 44.81 3.06
6185 7951 1.386748 CGTAGCACTTCACACACGATG 59.613 52.381 0.00 0.00 0.00 3.84
6186 7952 1.698165 CGTAGCACTTCACACACGAT 58.302 50.000 0.00 0.00 0.00 3.73
6187 7953 3.173247 CGTAGCACTTCACACACGA 57.827 52.632 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.