Multiple sequence alignment - TraesCS6A01G092900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G092900 chr6A 100.000 2455 0 0 1 2455 60731566 60734020 0.000000e+00 4534.0
1 TraesCS6A01G092900 chr6A 95.110 409 14 4 1771 2175 24283481 24283075 7.400000e-180 640.0
2 TraesCS6A01G092900 chr6A 95.200 125 3 2 2334 2455 24283076 24282952 6.930000e-46 195.0
3 TraesCS6A01G092900 chr6B 88.926 1481 112 16 1 1438 116365756 116367227 0.000000e+00 1779.0
4 TraesCS6A01G092900 chr6B 94.105 458 18 3 971 1419 116424828 116425285 0.000000e+00 688.0
5 TraesCS6A01G092900 chr6B 93.142 452 27 2 972 1419 116460423 116460874 0.000000e+00 660.0
6 TraesCS6A01G092900 chr6B 85.385 390 49 3 998 1380 116600699 116601087 4.920000e-107 398.0
7 TraesCS6A01G092900 chr6B 90.058 171 16 1 2165 2335 149527065 149526896 1.140000e-53 220.0
8 TraesCS6A01G092900 chr6D 83.391 867 103 25 1 840 54382968 54382116 0.000000e+00 765.0
9 TraesCS6A01G092900 chr6D 94.651 430 17 1 971 1394 54560978 54560549 0.000000e+00 662.0
10 TraesCS6A01G092900 chr6D 84.725 563 63 8 840 1380 54378256 54377695 2.150000e-150 542.0
11 TraesCS6A01G092900 chr6D 90.250 400 21 9 1043 1438 54564628 54564243 7.830000e-140 507.0
12 TraesCS6A01G092900 chr6D 84.932 73 11 0 2016 2088 2990554 2990482 9.420000e-10 75.0
13 TraesCS6A01G092900 chr6D 85.484 62 7 2 1771 1830 17445151 17445090 2.040000e-06 63.9
14 TraesCS6A01G092900 chr2A 95.833 336 14 0 1436 1771 455489133 455488798 5.970000e-151 544.0
15 TraesCS6A01G092900 chr2A 86.842 76 10 0 2013 2088 616203542 616203617 4.350000e-13 86.1
16 TraesCS6A01G092900 chr2A 93.478 46 3 0 1771 1816 728926734 728926689 4.380000e-08 69.4
17 TraesCS6A01G092900 chr1A 91.124 169 14 1 2174 2341 277640144 277640312 6.830000e-56 228.0
18 TraesCS6A01G092900 chr1A 90.476 168 16 0 2171 2338 282055924 282056091 3.180000e-54 222.0
19 TraesCS6A01G092900 chr1A 90.476 168 16 0 2168 2335 588138502 588138669 3.180000e-54 222.0
20 TraesCS6A01G092900 chr1B 92.903 155 11 0 2184 2338 183877351 183877197 2.460000e-55 226.0
21 TraesCS6A01G092900 chrUn 90.964 166 14 1 2170 2335 457867394 457867558 3.180000e-54 222.0
22 TraesCS6A01G092900 chrUn 91.071 56 4 1 1771 1825 402909607 402909552 9.420000e-10 75.0
23 TraesCS6A01G092900 chr7A 90.964 166 14 1 2170 2335 596660687 596660523 3.180000e-54 222.0
24 TraesCS6A01G092900 chr7D 88.827 179 15 4 2166 2341 32870184 32870360 5.320000e-52 215.0
25 TraesCS6A01G092900 chr2B 86.979 192 23 2 2174 2363 734335589 734335780 5.320000e-52 215.0
26 TraesCS6A01G092900 chr2B 100.000 41 0 0 1769 1809 442534406 442534366 2.620000e-10 76.8
27 TraesCS6A01G092900 chr4A 72.485 338 70 13 4 324 93943077 93942746 1.210000e-13 87.9
28 TraesCS6A01G092900 chr3A 78.947 133 22 3 490 617 734817613 734817482 4.350000e-13 86.1
29 TraesCS6A01G092900 chr5D 90.476 63 5 1 1771 1832 106415727 106415665 5.630000e-12 82.4
30 TraesCS6A01G092900 chr2D 84.932 73 11 0 2016 2088 203443656 203443584 9.420000e-10 75.0
31 TraesCS6A01G092900 chr3B 93.878 49 2 1 1767 1814 809057263 809057311 3.390000e-09 73.1
32 TraesCS6A01G092900 chr3B 95.455 44 2 0 1771 1814 40162763 40162806 1.220000e-08 71.3
33 TraesCS6A01G092900 chr7B 86.441 59 7 1 1771 1829 613154164 613154107 2.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G092900 chr6A 60731566 60734020 2454 False 4534.0 4534 100.0000 1 2455 1 chr6A.!!$F1 2454
1 TraesCS6A01G092900 chr6A 24282952 24283481 529 True 417.5 640 95.1550 1771 2455 2 chr6A.!!$R1 684
2 TraesCS6A01G092900 chr6B 116365756 116367227 1471 False 1779.0 1779 88.9260 1 1438 1 chr6B.!!$F1 1437
3 TraesCS6A01G092900 chr6D 54377695 54382968 5273 True 653.5 765 84.0580 1 1380 2 chr6D.!!$R3 1379
4 TraesCS6A01G092900 chr6D 54560549 54564628 4079 True 584.5 662 92.4505 971 1438 2 chr6D.!!$R4 467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 685 0.328926 TCCCATGCTTGCAGTCATCA 59.671 50.0 0.87 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 5442 0.031857 CTCTAGGCGTGCATCCTCAG 59.968 60.0 12.99 7.76 35.21 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 4.609947 TGGCAATGACGATGATTTTATGC 58.390 39.130 0.00 0.00 0.00 3.14
124 125 1.098050 GGCATTGCTCGGACTTGATT 58.902 50.000 8.82 0.00 0.00 2.57
127 128 3.578688 GCATTGCTCGGACTTGATTTTT 58.421 40.909 0.16 0.00 0.00 1.94
169 170 2.548920 GGCCTTCGATGGTTAGATCCAG 60.549 54.545 17.82 0.00 41.05 3.86
180 181 1.775385 TAGATCCAGTGATGACGGCA 58.225 50.000 0.00 0.00 0.00 5.69
201 202 0.672401 CTGAGCGGCGTTCCCTTTTA 60.672 55.000 20.92 0.05 0.00 1.52
251 252 5.009310 TCACGTTGTACTTGTGATGTCTAGT 59.991 40.000 10.12 0.00 37.69 2.57
277 278 3.275143 CTTGGTGCGGGTATGATTGTTA 58.725 45.455 0.00 0.00 0.00 2.41
289 290 6.258068 GGGTATGATTGTTACTGTAGCTTGTC 59.742 42.308 0.00 0.43 0.00 3.18
292 293 5.161358 TGATTGTTACTGTAGCTTGTCGAG 58.839 41.667 0.00 0.00 0.00 4.04
358 359 3.231818 GCTCCACCTAGGTATAGCTTCA 58.768 50.000 28.36 4.86 39.02 3.02
382 383 6.363357 CAGTTTTGTAGGAGTTTGCTATTTGC 59.637 38.462 0.00 0.00 43.25 3.68
383 384 5.385509 TTTGTAGGAGTTTGCTATTTGCC 57.614 39.130 0.00 0.00 42.00 4.52
384 385 3.006940 TGTAGGAGTTTGCTATTTGCCG 58.993 45.455 0.00 0.00 42.00 5.69
389 390 3.003378 GGAGTTTGCTATTTGCCGGTATC 59.997 47.826 1.90 0.00 42.00 2.24
422 423 1.134098 AGCTAGTGTTGGTTGTGTGCT 60.134 47.619 0.00 0.00 0.00 4.40
425 426 0.732571 AGTGTTGGTTGTGTGCTTCG 59.267 50.000 0.00 0.00 0.00 3.79
428 429 2.096174 GTGTTGGTTGTGTGCTTCGTAA 59.904 45.455 0.00 0.00 0.00 3.18
453 461 3.309296 CCTAGCTATGGAGAGGTTGGAA 58.691 50.000 0.00 0.00 40.82 3.53
538 564 3.293311 TGTTGTTCTGGTACGCTAGTC 57.707 47.619 0.00 0.00 0.00 2.59
552 578 1.283905 GCTAGTCCTTTGGGGCCTTAA 59.716 52.381 0.84 0.00 38.13 1.85
617 647 0.391263 GAAGAAAGGGCGATGACGGT 60.391 55.000 0.00 0.00 40.15 4.83
619 649 1.079405 GAAAGGGCGATGACGGTGA 60.079 57.895 0.00 0.00 40.15 4.02
639 669 1.068921 GATGCTTCCTCTCGCTCCC 59.931 63.158 0.00 0.00 0.00 4.30
652 682 1.676635 GCTCCCATGCTTGCAGTCA 60.677 57.895 0.87 0.00 0.00 3.41
655 685 0.328926 TCCCATGCTTGCAGTCATCA 59.671 50.000 0.87 0.00 0.00 3.07
659 689 3.011818 CCATGCTTGCAGTCATCACTAA 58.988 45.455 0.87 0.00 0.00 2.24
663 693 3.244181 TGCTTGCAGTCATCACTAAGTGA 60.244 43.478 0.00 0.00 46.90 3.41
715 745 6.038936 TGCTTCTTTTGTTCTTTGTACTACCC 59.961 38.462 0.00 0.00 0.00 3.69
816 847 6.037610 CCCTTGATTCTAAGACATTTTCCTCG 59.962 42.308 0.00 0.00 0.00 4.63
1003 4932 4.145052 ACCGATCTATCACACAGCTATGA 58.855 43.478 0.00 0.00 0.00 2.15
1089 5030 1.807981 GCGCGTGTACATGTGCCTA 60.808 57.895 33.62 0.00 45.36 3.93
1130 5071 2.182030 CGTCCTCGCCTTCCAGAC 59.818 66.667 0.00 0.00 0.00 3.51
1293 5234 1.244019 CGGAGGGGAAAAGGCTTGTG 61.244 60.000 0.00 0.00 0.00 3.33
1311 5252 5.277538 GCTTGTGGATAACTTGATCGAATCC 60.278 44.000 5.48 5.48 37.27 3.01
1403 5344 8.742777 AGTTGATGCATAGTGTTGAAATATTGT 58.257 29.630 0.00 0.00 0.00 2.71
1434 5379 7.472543 GTGTTGTAATTGGTTATAGGCTCTTG 58.527 38.462 0.00 0.00 0.00 3.02
1438 5383 7.277396 TGTAATTGGTTATAGGCTCTTGTACC 58.723 38.462 0.00 0.00 0.00 3.34
1439 5384 4.395959 TTGGTTATAGGCTCTTGTACCG 57.604 45.455 0.00 0.00 0.00 4.02
1440 5385 3.634504 TGGTTATAGGCTCTTGTACCGA 58.365 45.455 0.00 0.00 0.00 4.69
1441 5386 4.025360 TGGTTATAGGCTCTTGTACCGAA 58.975 43.478 0.00 0.00 0.00 4.30
1442 5387 4.467082 TGGTTATAGGCTCTTGTACCGAAA 59.533 41.667 0.00 0.00 0.00 3.46
1443 5388 5.046448 TGGTTATAGGCTCTTGTACCGAAAA 60.046 40.000 0.00 0.00 0.00 2.29
1444 5389 6.053650 GGTTATAGGCTCTTGTACCGAAAAT 58.946 40.000 0.00 0.00 0.00 1.82
1445 5390 6.202379 GGTTATAGGCTCTTGTACCGAAAATC 59.798 42.308 0.00 0.00 0.00 2.17
1446 5391 3.695830 AGGCTCTTGTACCGAAAATCA 57.304 42.857 0.00 0.00 0.00 2.57
1447 5392 3.600388 AGGCTCTTGTACCGAAAATCAG 58.400 45.455 0.00 0.00 0.00 2.90
1448 5393 3.008049 AGGCTCTTGTACCGAAAATCAGT 59.992 43.478 0.00 0.00 0.00 3.41
1449 5394 3.751698 GGCTCTTGTACCGAAAATCAGTT 59.248 43.478 0.00 0.00 0.00 3.16
1450 5395 4.215613 GGCTCTTGTACCGAAAATCAGTTT 59.784 41.667 0.00 0.00 0.00 2.66
1451 5396 5.383130 GCTCTTGTACCGAAAATCAGTTTC 58.617 41.667 0.00 0.00 42.01 2.78
1452 5397 5.179555 GCTCTTGTACCGAAAATCAGTTTCT 59.820 40.000 0.00 0.00 43.07 2.52
1453 5398 6.539649 TCTTGTACCGAAAATCAGTTTCTG 57.460 37.500 0.00 0.00 43.07 3.02
1454 5399 6.285224 TCTTGTACCGAAAATCAGTTTCTGA 58.715 36.000 1.92 1.92 44.99 3.27
1455 5400 6.423905 TCTTGTACCGAAAATCAGTTTCTGAG 59.576 38.462 5.71 0.00 44.08 3.35
1456 5401 4.451096 TGTACCGAAAATCAGTTTCTGAGC 59.549 41.667 5.71 0.00 44.08 4.26
1457 5402 3.476552 ACCGAAAATCAGTTTCTGAGCA 58.523 40.909 5.71 0.00 44.08 4.26
1458 5403 3.251004 ACCGAAAATCAGTTTCTGAGCAC 59.749 43.478 5.71 0.00 44.08 4.40
1459 5404 3.250762 CCGAAAATCAGTTTCTGAGCACA 59.749 43.478 5.71 0.00 44.08 4.57
1460 5405 4.461405 CGAAAATCAGTTTCTGAGCACAG 58.539 43.478 4.57 4.57 44.08 3.66
1461 5406 4.612259 CGAAAATCAGTTTCTGAGCACAGG 60.612 45.833 11.42 0.00 44.08 4.00
1462 5407 1.818642 ATCAGTTTCTGAGCACAGGC 58.181 50.000 11.42 2.72 44.08 4.85
1463 5408 7.001657 GAAAATCAGTTTCTGAGCACAGGCT 62.002 44.000 11.42 4.89 46.83 4.58
1473 5418 3.003740 GCACAGGCTCAGATGATCC 57.996 57.895 0.00 0.00 36.96 3.36
1474 5419 0.534652 GCACAGGCTCAGATGATCCC 60.535 60.000 0.00 0.00 36.96 3.85
1475 5420 0.249784 CACAGGCTCAGATGATCCCG 60.250 60.000 0.00 0.00 30.90 5.14
1476 5421 0.397675 ACAGGCTCAGATGATCCCGA 60.398 55.000 0.00 0.00 30.90 5.14
1477 5422 0.975135 CAGGCTCAGATGATCCCGAT 59.025 55.000 0.00 0.00 30.90 4.18
1478 5423 2.174360 CAGGCTCAGATGATCCCGATA 58.826 52.381 0.00 0.00 30.90 2.92
1479 5424 2.765135 CAGGCTCAGATGATCCCGATAT 59.235 50.000 0.00 0.00 30.90 1.63
1480 5425 3.197333 CAGGCTCAGATGATCCCGATATT 59.803 47.826 0.00 0.00 30.90 1.28
1481 5426 3.197333 AGGCTCAGATGATCCCGATATTG 59.803 47.826 0.00 0.00 30.90 1.90
1482 5427 3.055530 GGCTCAGATGATCCCGATATTGT 60.056 47.826 0.00 0.00 0.00 2.71
1483 5428 3.931468 GCTCAGATGATCCCGATATTGTG 59.069 47.826 0.00 0.00 0.00 3.33
1484 5429 4.322273 GCTCAGATGATCCCGATATTGTGA 60.322 45.833 0.00 0.00 0.00 3.58
1485 5430 5.626347 GCTCAGATGATCCCGATATTGTGAT 60.626 44.000 0.00 0.00 0.00 3.06
1486 5431 5.970592 TCAGATGATCCCGATATTGTGATC 58.029 41.667 8.15 8.15 35.33 2.92
1487 5432 5.718607 TCAGATGATCCCGATATTGTGATCT 59.281 40.000 14.36 3.19 35.69 2.75
1488 5433 6.212187 TCAGATGATCCCGATATTGTGATCTT 59.788 38.462 14.36 9.39 35.69 2.40
1489 5434 6.534436 CAGATGATCCCGATATTGTGATCTTC 59.466 42.308 16.96 16.96 38.07 2.87
1490 5435 5.152623 TGATCCCGATATTGTGATCTTCC 57.847 43.478 14.36 0.00 35.69 3.46
1491 5436 3.660501 TCCCGATATTGTGATCTTCCG 57.339 47.619 0.00 0.00 0.00 4.30
1492 5437 2.963101 TCCCGATATTGTGATCTTCCGT 59.037 45.455 0.00 0.00 0.00 4.69
1493 5438 3.386726 TCCCGATATTGTGATCTTCCGTT 59.613 43.478 0.00 0.00 0.00 4.44
1494 5439 3.741344 CCCGATATTGTGATCTTCCGTTC 59.259 47.826 0.00 0.00 0.00 3.95
1495 5440 3.425525 CCGATATTGTGATCTTCCGTTCG 59.574 47.826 0.00 0.00 0.00 3.95
1496 5441 3.121328 CGATATTGTGATCTTCCGTTCGC 60.121 47.826 0.00 0.00 0.00 4.70
1497 5442 1.369625 ATTGTGATCTTCCGTTCGCC 58.630 50.000 0.00 0.00 0.00 5.54
1498 5443 0.320374 TTGTGATCTTCCGTTCGCCT 59.680 50.000 0.00 0.00 0.00 5.52
1499 5444 0.389817 TGTGATCTTCCGTTCGCCTG 60.390 55.000 0.00 0.00 0.00 4.85
1500 5445 0.108804 GTGATCTTCCGTTCGCCTGA 60.109 55.000 0.00 0.00 0.00 3.86
1501 5446 0.173481 TGATCTTCCGTTCGCCTGAG 59.827 55.000 0.00 0.00 0.00 3.35
1502 5447 0.528684 GATCTTCCGTTCGCCTGAGG 60.529 60.000 0.00 0.00 0.00 3.86
1503 5448 0.970937 ATCTTCCGTTCGCCTGAGGA 60.971 55.000 0.65 0.00 0.00 3.71
1504 5449 0.970937 TCTTCCGTTCGCCTGAGGAT 60.971 55.000 0.65 0.00 32.19 3.24
1505 5450 0.807667 CTTCCGTTCGCCTGAGGATG 60.808 60.000 0.65 0.00 32.19 3.51
1506 5451 2.852495 TTCCGTTCGCCTGAGGATGC 62.852 60.000 0.65 0.00 32.19 3.91
1507 5452 2.125552 CGTTCGCCTGAGGATGCA 60.126 61.111 0.65 0.00 0.00 3.96
1508 5453 2.456119 CGTTCGCCTGAGGATGCAC 61.456 63.158 0.65 0.00 0.00 4.57
1509 5454 2.125552 TTCGCCTGAGGATGCACG 60.126 61.111 0.65 0.00 0.00 5.34
1510 5455 4.819761 TCGCCTGAGGATGCACGC 62.820 66.667 0.65 0.00 0.00 5.34
1512 5457 4.479993 GCCTGAGGATGCACGCCT 62.480 66.667 0.65 9.59 38.81 5.52
1513 5458 3.094062 GCCTGAGGATGCACGCCTA 62.094 63.158 0.65 0.00 35.44 3.93
1514 5459 1.068753 CCTGAGGATGCACGCCTAG 59.931 63.158 9.78 7.97 35.44 3.02
1515 5460 1.395045 CCTGAGGATGCACGCCTAGA 61.395 60.000 9.78 0.25 35.44 2.43
1516 5461 0.031857 CTGAGGATGCACGCCTAGAG 59.968 60.000 9.78 5.91 35.44 2.43
1517 5462 1.300542 GAGGATGCACGCCTAGAGC 60.301 63.158 9.78 0.00 35.44 4.09
1518 5463 1.743321 GAGGATGCACGCCTAGAGCT 61.743 60.000 9.78 0.00 40.39 4.09
1519 5464 1.593750 GGATGCACGCCTAGAGCTG 60.594 63.158 0.00 0.00 40.39 4.24
1520 5465 1.142748 GATGCACGCCTAGAGCTGT 59.857 57.895 0.00 0.00 40.39 4.40
1521 5466 0.385751 GATGCACGCCTAGAGCTGTA 59.614 55.000 0.00 0.00 40.39 2.74
1522 5467 1.000283 GATGCACGCCTAGAGCTGTAT 60.000 52.381 0.00 0.00 40.39 2.29
1523 5468 0.824109 TGCACGCCTAGAGCTGTATT 59.176 50.000 0.00 0.00 40.39 1.89
1524 5469 1.207089 TGCACGCCTAGAGCTGTATTT 59.793 47.619 0.00 0.00 40.39 1.40
1525 5470 2.280628 GCACGCCTAGAGCTGTATTTT 58.719 47.619 0.00 0.00 40.39 1.82
1526 5471 2.030946 GCACGCCTAGAGCTGTATTTTG 59.969 50.000 0.00 0.00 40.39 2.44
1527 5472 3.262420 CACGCCTAGAGCTGTATTTTGT 58.738 45.455 0.00 0.00 40.39 2.83
1528 5473 3.307242 CACGCCTAGAGCTGTATTTTGTC 59.693 47.826 0.00 0.00 40.39 3.18
1529 5474 3.056107 ACGCCTAGAGCTGTATTTTGTCA 60.056 43.478 0.00 0.00 40.39 3.58
1530 5475 4.122776 CGCCTAGAGCTGTATTTTGTCAT 58.877 43.478 0.00 0.00 40.39 3.06
1531 5476 4.210120 CGCCTAGAGCTGTATTTTGTCATC 59.790 45.833 0.00 0.00 40.39 2.92
1532 5477 4.513318 GCCTAGAGCTGTATTTTGTCATCC 59.487 45.833 0.00 0.00 38.99 3.51
1533 5478 5.686124 GCCTAGAGCTGTATTTTGTCATCCT 60.686 44.000 0.00 0.00 38.99 3.24
1534 5479 6.463049 GCCTAGAGCTGTATTTTGTCATCCTA 60.463 42.308 0.00 0.00 38.99 2.94
1535 5480 7.675062 CCTAGAGCTGTATTTTGTCATCCTAT 58.325 38.462 0.00 0.00 0.00 2.57
1536 5481 8.153550 CCTAGAGCTGTATTTTGTCATCCTATT 58.846 37.037 0.00 0.00 0.00 1.73
1537 5482 9.553064 CTAGAGCTGTATTTTGTCATCCTATTT 57.447 33.333 0.00 0.00 0.00 1.40
1538 5483 8.443953 AGAGCTGTATTTTGTCATCCTATTTC 57.556 34.615 0.00 0.00 0.00 2.17
1539 5484 8.270744 AGAGCTGTATTTTGTCATCCTATTTCT 58.729 33.333 0.00 0.00 0.00 2.52
1540 5485 8.814038 AGCTGTATTTTGTCATCCTATTTCTT 57.186 30.769 0.00 0.00 0.00 2.52
1541 5486 9.247861 AGCTGTATTTTGTCATCCTATTTCTTT 57.752 29.630 0.00 0.00 0.00 2.52
1561 5506 7.278461 TCTTTAGAAATAGGATCGACAGAGG 57.722 40.000 0.00 0.00 0.00 3.69
1562 5507 7.061054 TCTTTAGAAATAGGATCGACAGAGGA 58.939 38.462 0.00 0.00 0.00 3.71
1563 5508 6.636562 TTAGAAATAGGATCGACAGAGGAC 57.363 41.667 0.00 0.00 0.00 3.85
1564 5509 3.566322 AGAAATAGGATCGACAGAGGACG 59.434 47.826 0.00 0.00 0.00 4.79
1565 5510 1.240256 ATAGGATCGACAGAGGACGC 58.760 55.000 0.00 0.00 32.26 5.19
1566 5511 0.107361 TAGGATCGACAGAGGACGCA 60.107 55.000 0.00 0.00 32.26 5.24
1567 5512 0.753479 AGGATCGACAGAGGACGCAT 60.753 55.000 0.00 0.00 32.26 4.73
1568 5513 0.103208 GGATCGACAGAGGACGCATT 59.897 55.000 0.00 0.00 32.26 3.56
1569 5514 1.203928 GATCGACAGAGGACGCATTG 58.796 55.000 0.00 0.00 32.26 2.82
1570 5515 0.817654 ATCGACAGAGGACGCATTGA 59.182 50.000 0.00 0.00 32.26 2.57
1571 5516 0.817654 TCGACAGAGGACGCATTGAT 59.182 50.000 0.00 0.00 32.26 2.57
1572 5517 1.204704 TCGACAGAGGACGCATTGATT 59.795 47.619 0.00 0.00 32.26 2.57
1573 5518 1.325640 CGACAGAGGACGCATTGATTG 59.674 52.381 0.00 0.00 0.00 2.67
1574 5519 2.350522 GACAGAGGACGCATTGATTGT 58.649 47.619 0.00 0.00 0.00 2.71
1575 5520 2.349886 GACAGAGGACGCATTGATTGTC 59.650 50.000 0.00 0.00 0.00 3.18
1576 5521 2.289631 ACAGAGGACGCATTGATTGTCA 60.290 45.455 6.50 0.00 34.32 3.58
1577 5522 2.094894 CAGAGGACGCATTGATTGTCAC 59.905 50.000 6.50 1.82 34.32 3.67
1578 5523 1.061131 GAGGACGCATTGATTGTCACG 59.939 52.381 6.50 0.00 34.32 4.35
1579 5524 0.096976 GGACGCATTGATTGTCACGG 59.903 55.000 6.50 0.00 34.32 4.94
1580 5525 0.096976 GACGCATTGATTGTCACGGG 59.903 55.000 0.00 0.00 32.91 5.28
1581 5526 1.226379 CGCATTGATTGTCACGGGC 60.226 57.895 0.00 0.00 0.00 6.13
1582 5527 1.226379 GCATTGATTGTCACGGGCG 60.226 57.895 0.00 0.00 0.00 6.13
1583 5528 1.643868 GCATTGATTGTCACGGGCGA 61.644 55.000 0.00 0.00 0.00 5.54
1584 5529 0.801872 CATTGATTGTCACGGGCGAA 59.198 50.000 0.00 0.00 0.00 4.70
1585 5530 1.198867 CATTGATTGTCACGGGCGAAA 59.801 47.619 0.00 0.00 0.00 3.46
1586 5531 0.589223 TTGATTGTCACGGGCGAAAC 59.411 50.000 0.00 0.00 0.00 2.78
1587 5532 0.533085 TGATTGTCACGGGCGAAACA 60.533 50.000 0.00 0.00 0.00 2.83
1588 5533 0.110373 GATTGTCACGGGCGAAACAC 60.110 55.000 0.00 0.00 0.00 3.32
1589 5534 0.534203 ATTGTCACGGGCGAAACACT 60.534 50.000 0.00 0.00 0.00 3.55
1590 5535 1.433053 TTGTCACGGGCGAAACACTG 61.433 55.000 0.00 0.00 0.00 3.66
1591 5536 1.885850 GTCACGGGCGAAACACTGT 60.886 57.895 0.00 0.00 0.00 3.55
1592 5537 1.885388 TCACGGGCGAAACACTGTG 60.885 57.895 6.19 6.19 43.59 3.66
1593 5538 3.276846 ACGGGCGAAACACTGTGC 61.277 61.111 7.90 0.00 0.00 4.57
1594 5539 4.368808 CGGGCGAAACACTGTGCG 62.369 66.667 7.90 4.83 0.00 5.34
1595 5540 3.276846 GGGCGAAACACTGTGCGT 61.277 61.111 7.90 0.00 0.00 5.24
1596 5541 2.248431 GGCGAAACACTGTGCGTC 59.752 61.111 7.90 1.18 0.00 5.19
1597 5542 2.248431 GCGAAACACTGTGCGTCC 59.752 61.111 7.90 0.00 0.00 4.79
1598 5543 2.544359 CGAAACACTGTGCGTCCG 59.456 61.111 7.90 3.09 0.00 4.79
1599 5544 2.935955 GAAACACTGTGCGTCCGG 59.064 61.111 7.90 0.00 0.00 5.14
1600 5545 2.590575 AAACACTGTGCGTCCGGG 60.591 61.111 7.90 0.00 0.00 5.73
1607 5552 4.778143 GTGCGTCCGGGCCAGAAT 62.778 66.667 4.39 0.00 0.00 2.40
1608 5553 4.467084 TGCGTCCGGGCCAGAATC 62.467 66.667 4.39 0.00 0.00 2.52
1609 5554 4.467084 GCGTCCGGGCCAGAATCA 62.467 66.667 4.39 0.00 0.00 2.57
1610 5555 2.202932 CGTCCGGGCCAGAATCAG 60.203 66.667 4.39 0.00 0.00 2.90
1611 5556 2.190578 GTCCGGGCCAGAATCAGG 59.809 66.667 4.39 0.00 0.00 3.86
1612 5557 3.089874 TCCGGGCCAGAATCAGGG 61.090 66.667 4.39 0.00 0.00 4.45
1617 5562 3.512516 GCCAGAATCAGGGCGCAC 61.513 66.667 10.83 5.15 40.93 5.34
1618 5563 3.197790 CCAGAATCAGGGCGCACG 61.198 66.667 10.83 1.66 0.00 5.34
1619 5564 3.197790 CAGAATCAGGGCGCACGG 61.198 66.667 10.83 6.59 0.00 4.94
1628 5573 4.221422 GGCGCACGGCTCATCCTA 62.221 66.667 10.83 0.00 42.94 2.94
1629 5574 2.029666 GCGCACGGCTCATCCTAT 59.970 61.111 0.30 0.00 39.11 2.57
1630 5575 1.595382 GCGCACGGCTCATCCTATT 60.595 57.895 0.30 0.00 39.11 1.73
1631 5576 1.160329 GCGCACGGCTCATCCTATTT 61.160 55.000 0.30 0.00 39.11 1.40
1632 5577 0.861837 CGCACGGCTCATCCTATTTC 59.138 55.000 0.00 0.00 0.00 2.17
1633 5578 1.230324 GCACGGCTCATCCTATTTCC 58.770 55.000 0.00 0.00 0.00 3.13
1634 5579 1.202698 GCACGGCTCATCCTATTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
1635 5580 2.487934 CACGGCTCATCCTATTTCCTG 58.512 52.381 0.00 0.00 0.00 3.86
1636 5581 2.103094 CACGGCTCATCCTATTTCCTGA 59.897 50.000 0.00 0.00 0.00 3.86
1637 5582 2.366916 ACGGCTCATCCTATTTCCTGAG 59.633 50.000 0.00 0.00 38.49 3.35
1640 5585 3.415457 CTCATCCTATTTCCTGAGCCC 57.585 52.381 0.00 0.00 0.00 5.19
1641 5586 2.707791 CTCATCCTATTTCCTGAGCCCA 59.292 50.000 0.00 0.00 0.00 5.36
1642 5587 2.439507 TCATCCTATTTCCTGAGCCCAC 59.560 50.000 0.00 0.00 0.00 4.61
1643 5588 1.213296 TCCTATTTCCTGAGCCCACC 58.787 55.000 0.00 0.00 0.00 4.61
1644 5589 0.183731 CCTATTTCCTGAGCCCACCC 59.816 60.000 0.00 0.00 0.00 4.61
1645 5590 0.918983 CTATTTCCTGAGCCCACCCA 59.081 55.000 0.00 0.00 0.00 4.51
1646 5591 1.284785 CTATTTCCTGAGCCCACCCAA 59.715 52.381 0.00 0.00 0.00 4.12
1647 5592 0.040204 ATTTCCTGAGCCCACCCAAG 59.960 55.000 0.00 0.00 0.00 3.61
1648 5593 2.713531 TTTCCTGAGCCCACCCAAGC 62.714 60.000 0.00 0.00 0.00 4.01
1649 5594 4.748144 CCTGAGCCCACCCAAGCC 62.748 72.222 0.00 0.00 0.00 4.35
1655 5600 3.636231 CCCACCCAAGCCGTCTCA 61.636 66.667 0.00 0.00 0.00 3.27
1656 5601 2.358737 CCACCCAAGCCGTCTCAC 60.359 66.667 0.00 0.00 0.00 3.51
1657 5602 2.738521 CACCCAAGCCGTCTCACG 60.739 66.667 0.00 0.00 42.11 4.35
1658 5603 4.681978 ACCCAAGCCGTCTCACGC 62.682 66.667 0.00 0.00 40.91 5.34
1661 5606 4.717629 CAAGCCGTCTCACGCCGA 62.718 66.667 0.00 0.00 40.91 5.54
1662 5607 4.719369 AAGCCGTCTCACGCCGAC 62.719 66.667 0.00 0.00 40.91 4.79
1666 5611 4.406173 CGTCTCACGCCGACAGCT 62.406 66.667 0.00 0.00 40.39 4.24
1667 5612 2.807045 GTCTCACGCCGACAGCTG 60.807 66.667 13.48 13.48 40.39 4.24
1668 5613 4.724602 TCTCACGCCGACAGCTGC 62.725 66.667 15.27 5.81 40.39 5.25
1672 5617 4.908687 ACGCCGACAGCTGCACAA 62.909 61.111 15.27 0.00 40.39 3.33
1673 5618 3.648982 CGCCGACAGCTGCACAAA 61.649 61.111 15.27 0.00 40.39 2.83
1674 5619 2.956987 GCCGACAGCTGCACAAAT 59.043 55.556 15.27 0.00 38.99 2.32
1675 5620 1.443194 GCCGACAGCTGCACAAATG 60.443 57.895 15.27 0.00 38.99 2.32
1710 5655 4.019174 CCCCCATCATAAATGCATCTACC 58.981 47.826 0.00 0.00 0.00 3.18
1711 5656 4.508943 CCCCCATCATAAATGCATCTACCA 60.509 45.833 0.00 0.00 0.00 3.25
1712 5657 4.703575 CCCCATCATAAATGCATCTACCAG 59.296 45.833 0.00 0.00 0.00 4.00
1713 5658 4.157289 CCCATCATAAATGCATCTACCAGC 59.843 45.833 0.00 0.00 0.00 4.85
1714 5659 5.008331 CCATCATAAATGCATCTACCAGCT 58.992 41.667 0.00 0.00 0.00 4.24
1715 5660 5.123502 CCATCATAAATGCATCTACCAGCTC 59.876 44.000 0.00 0.00 0.00 4.09
1716 5661 5.294734 TCATAAATGCATCTACCAGCTCA 57.705 39.130 0.00 0.00 0.00 4.26
1717 5662 5.059161 TCATAAATGCATCTACCAGCTCAC 58.941 41.667 0.00 0.00 0.00 3.51
1718 5663 1.945387 AATGCATCTACCAGCTCACG 58.055 50.000 0.00 0.00 0.00 4.35
1719 5664 0.531532 ATGCATCTACCAGCTCACGC 60.532 55.000 0.00 0.00 0.00 5.34
1720 5665 1.884926 GCATCTACCAGCTCACGCC 60.885 63.158 0.00 0.00 36.60 5.68
1721 5666 1.227380 CATCTACCAGCTCACGCCC 60.227 63.158 0.00 0.00 36.60 6.13
1722 5667 2.435693 ATCTACCAGCTCACGCCCC 61.436 63.158 0.00 0.00 36.60 5.80
1723 5668 2.880629 ATCTACCAGCTCACGCCCCT 62.881 60.000 0.00 0.00 36.60 4.79
1724 5669 3.075005 TACCAGCTCACGCCCCTC 61.075 66.667 0.00 0.00 36.60 4.30
1725 5670 3.602075 TACCAGCTCACGCCCCTCT 62.602 63.158 0.00 0.00 36.60 3.69
1726 5671 4.154347 CCAGCTCACGCCCCTCTC 62.154 72.222 0.00 0.00 36.60 3.20
1727 5672 3.073735 CAGCTCACGCCCCTCTCT 61.074 66.667 0.00 0.00 36.60 3.10
1728 5673 1.754621 CAGCTCACGCCCCTCTCTA 60.755 63.158 0.00 0.00 36.60 2.43
1729 5674 1.755008 AGCTCACGCCCCTCTCTAC 60.755 63.158 0.00 0.00 36.60 2.59
1730 5675 1.755008 GCTCACGCCCCTCTCTACT 60.755 63.158 0.00 0.00 0.00 2.57
1731 5676 1.324005 GCTCACGCCCCTCTCTACTT 61.324 60.000 0.00 0.00 0.00 2.24
1732 5677 2.022754 GCTCACGCCCCTCTCTACTTA 61.023 57.143 0.00 0.00 0.00 2.24
1733 5678 2.376109 CTCACGCCCCTCTCTACTTAA 58.624 52.381 0.00 0.00 0.00 1.85
1734 5679 2.097825 TCACGCCCCTCTCTACTTAAC 58.902 52.381 0.00 0.00 0.00 2.01
1735 5680 1.822990 CACGCCCCTCTCTACTTAACA 59.177 52.381 0.00 0.00 0.00 2.41
1736 5681 1.823610 ACGCCCCTCTCTACTTAACAC 59.176 52.381 0.00 0.00 0.00 3.32
1737 5682 1.822990 CGCCCCTCTCTACTTAACACA 59.177 52.381 0.00 0.00 0.00 3.72
1738 5683 2.416972 CGCCCCTCTCTACTTAACACAC 60.417 54.545 0.00 0.00 0.00 3.82
1739 5684 2.093606 GCCCCTCTCTACTTAACACACC 60.094 54.545 0.00 0.00 0.00 4.16
1740 5685 2.500504 CCCCTCTCTACTTAACACACCC 59.499 54.545 0.00 0.00 0.00 4.61
1741 5686 3.170717 CCCTCTCTACTTAACACACCCA 58.829 50.000 0.00 0.00 0.00 4.51
1742 5687 3.195825 CCCTCTCTACTTAACACACCCAG 59.804 52.174 0.00 0.00 0.00 4.45
1743 5688 3.368531 CCTCTCTACTTAACACACCCAGC 60.369 52.174 0.00 0.00 0.00 4.85
1744 5689 3.507411 TCTCTACTTAACACACCCAGCT 58.493 45.455 0.00 0.00 0.00 4.24
1745 5690 3.258372 TCTCTACTTAACACACCCAGCTG 59.742 47.826 6.78 6.78 0.00 4.24
1746 5691 2.076863 CTACTTAACACACCCAGCTGC 58.923 52.381 8.66 0.00 0.00 5.25
1747 5692 0.474184 ACTTAACACACCCAGCTGCT 59.526 50.000 8.66 0.00 0.00 4.24
1748 5693 1.160137 CTTAACACACCCAGCTGCTC 58.840 55.000 8.66 0.00 0.00 4.26
1749 5694 0.472044 TTAACACACCCAGCTGCTCA 59.528 50.000 8.66 0.00 0.00 4.26
1750 5695 0.472044 TAACACACCCAGCTGCTCAA 59.528 50.000 8.66 0.00 0.00 3.02
1751 5696 0.178981 AACACACCCAGCTGCTCAAT 60.179 50.000 8.66 0.00 0.00 2.57
1752 5697 0.178981 ACACACCCAGCTGCTCAATT 60.179 50.000 8.66 0.00 0.00 2.32
1753 5698 0.963962 CACACCCAGCTGCTCAATTT 59.036 50.000 8.66 0.00 0.00 1.82
1754 5699 1.342174 CACACCCAGCTGCTCAATTTT 59.658 47.619 8.66 0.00 0.00 1.82
1755 5700 1.615392 ACACCCAGCTGCTCAATTTTC 59.385 47.619 8.66 0.00 0.00 2.29
1756 5701 1.067354 CACCCAGCTGCTCAATTTTCC 60.067 52.381 8.66 0.00 0.00 3.13
1757 5702 0.533951 CCCAGCTGCTCAATTTTCCC 59.466 55.000 8.66 0.00 0.00 3.97
1758 5703 0.533951 CCAGCTGCTCAATTTTCCCC 59.466 55.000 8.66 0.00 0.00 4.81
1759 5704 0.533951 CAGCTGCTCAATTTTCCCCC 59.466 55.000 0.00 0.00 0.00 5.40
1760 5705 0.114954 AGCTGCTCAATTTTCCCCCA 59.885 50.000 0.00 0.00 0.00 4.96
1761 5706 1.197812 GCTGCTCAATTTTCCCCCAT 58.802 50.000 0.00 0.00 0.00 4.00
1762 5707 1.137675 GCTGCTCAATTTTCCCCCATC 59.862 52.381 0.00 0.00 0.00 3.51
1763 5708 1.758862 CTGCTCAATTTTCCCCCATCC 59.241 52.381 0.00 0.00 0.00 3.51
1764 5709 1.123077 GCTCAATTTTCCCCCATCCC 58.877 55.000 0.00 0.00 0.00 3.85
1765 5710 1.793414 CTCAATTTTCCCCCATCCCC 58.207 55.000 0.00 0.00 0.00 4.81
1766 5711 0.032615 TCAATTTTCCCCCATCCCCG 60.033 55.000 0.00 0.00 0.00 5.73
1767 5712 0.325203 CAATTTTCCCCCATCCCCGT 60.325 55.000 0.00 0.00 0.00 5.28
1768 5713 1.063567 CAATTTTCCCCCATCCCCGTA 60.064 52.381 0.00 0.00 0.00 4.02
1769 5714 1.541275 ATTTTCCCCCATCCCCGTAT 58.459 50.000 0.00 0.00 0.00 3.06
1788 5733 0.909610 TCAGGGCCGTCTCCAGAAAT 60.910 55.000 0.00 0.00 0.00 2.17
1799 5744 0.323360 TCCAGAAATTTGAGGCCCCG 60.323 55.000 0.00 0.00 0.00 5.73
1819 5764 3.359654 CGGTGCGAAATGTAAAATAGGC 58.640 45.455 0.00 0.00 0.00 3.93
1821 5766 3.380320 GGTGCGAAATGTAAAATAGGCCT 59.620 43.478 11.78 11.78 0.00 5.19
1822 5767 4.142249 GGTGCGAAATGTAAAATAGGCCTT 60.142 41.667 12.58 0.00 0.00 4.35
1823 5768 5.066764 GGTGCGAAATGTAAAATAGGCCTTA 59.933 40.000 12.58 0.00 0.00 2.69
1826 5771 7.704899 GTGCGAAATGTAAAATAGGCCTTAATT 59.295 33.333 12.58 1.76 0.00 1.40
1827 5772 8.254508 TGCGAAATGTAAAATAGGCCTTAATTT 58.745 29.630 12.58 9.43 0.00 1.82
2091 6039 4.336433 CCAGGTGTTAATGTAGCCAATCTG 59.664 45.833 0.00 0.00 0.00 2.90
2099 6047 3.334583 TGTAGCCAATCTGTTGACTCC 57.665 47.619 0.00 0.00 37.53 3.85
2200 6148 9.301897 ACTTTCTTTGTTTCTGAATATAAGCCT 57.698 29.630 0.00 0.00 0.00 4.58
2220 6168 7.251321 AGCCTTTATAGAGATTCCACTATGG 57.749 40.000 9.70 0.00 39.43 2.74
2221 6169 7.019388 AGCCTTTATAGAGATTCCACTATGGA 58.981 38.462 0.00 0.00 46.61 3.41
2231 6179 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
2232 6180 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
2233 6181 2.632996 CCACTATGGACCACATACGGAT 59.367 50.000 0.00 0.00 40.96 4.18
2234 6182 3.554960 CCACTATGGACCACATACGGATG 60.555 52.174 5.94 5.94 40.96 3.51
2235 6183 6.014967 CCACTATGGACCACATACGGATGT 62.015 50.000 7.68 7.68 43.21 3.06
2236 6184 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
2237 6185 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
2238 6186 6.152154 CACTATGGACCACATACGGATGTATA 59.848 42.308 14.23 6.48 44.82 1.47
2239 6187 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
2240 6188 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
2241 6189 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
2242 6190 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
2243 6191 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
2244 6192 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
2245 6193 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2246 6194 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2247 6195 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2248 6196 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2249 6197 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2250 6198 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2278 6226 6.122850 TGTAGATTCATTCATTTTGCTCCG 57.877 37.500 0.00 0.00 0.00 4.63
2279 6227 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2280 6228 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2281 6229 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2282 6230 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2283 6231 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2284 6232 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2285 6233 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2286 6234 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2287 6235 6.597672 TCATTCATTTTGCTCCGTATGTAGTT 59.402 34.615 0.00 0.00 0.00 2.24
2288 6236 6.417191 TTCATTTTGCTCCGTATGTAGTTC 57.583 37.500 0.00 0.00 0.00 3.01
2289 6237 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
2290 6238 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
2291 6239 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
2292 6240 7.438160 TCATTTTGCTCCGTATGTAGTTCATAG 59.562 37.037 0.00 0.00 39.36 2.23
2293 6241 5.847111 TTGCTCCGTATGTAGTTCATAGT 57.153 39.130 0.00 0.00 39.36 2.12
2294 6242 5.183014 TGCTCCGTATGTAGTTCATAGTG 57.817 43.478 0.00 0.00 39.36 2.74
2295 6243 4.885325 TGCTCCGTATGTAGTTCATAGTGA 59.115 41.667 0.00 0.00 39.36 3.41
2296 6244 5.358725 TGCTCCGTATGTAGTTCATAGTGAA 59.641 40.000 0.00 0.00 39.36 3.18
2297 6245 6.127563 TGCTCCGTATGTAGTTCATAGTGAAA 60.128 38.462 0.00 0.00 38.22 2.69
2298 6246 6.924060 GCTCCGTATGTAGTTCATAGTGAAAT 59.076 38.462 0.00 0.00 38.22 2.17
2299 6247 7.115095 GCTCCGTATGTAGTTCATAGTGAAATC 59.885 40.741 0.00 0.00 38.22 2.17
2300 6248 8.234136 TCCGTATGTAGTTCATAGTGAAATCT 57.766 34.615 0.00 0.00 38.22 2.40
2301 6249 8.350722 TCCGTATGTAGTTCATAGTGAAATCTC 58.649 37.037 0.00 0.00 38.22 2.75
2302 6250 8.353684 CCGTATGTAGTTCATAGTGAAATCTCT 58.646 37.037 0.00 0.00 38.22 3.10
2326 6274 9.643693 TCTACAAAAACTTATACTTAGGAACGG 57.356 33.333 0.00 0.00 0.00 4.44
2327 6275 9.643693 CTACAAAAACTTATACTTAGGAACGGA 57.356 33.333 0.00 0.00 0.00 4.69
2328 6276 8.543862 ACAAAAACTTATACTTAGGAACGGAG 57.456 34.615 0.00 0.00 0.00 4.63
2329 6277 7.605309 ACAAAAACTTATACTTAGGAACGGAGG 59.395 37.037 0.00 0.00 0.00 4.30
2330 6278 5.866159 AACTTATACTTAGGAACGGAGGG 57.134 43.478 0.00 0.00 0.00 4.30
2331 6279 5.134725 ACTTATACTTAGGAACGGAGGGA 57.865 43.478 0.00 0.00 0.00 4.20
2332 6280 5.139001 ACTTATACTTAGGAACGGAGGGAG 58.861 45.833 0.00 0.00 0.00 4.30
2340 6288 1.213926 GGAACGGAGGGAGTAGTAGGA 59.786 57.143 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 7.466746 CAGATCTTGGATTTTCACCCTAAAA 57.533 36.000 0.00 0.00 33.15 1.52
169 170 1.790387 GCTCAGTTGCCGTCATCAC 59.210 57.895 0.00 0.00 0.00 3.06
180 181 2.676163 AAAGGGAACGCCGCTCAGTT 62.676 55.000 0.00 0.00 37.02 3.16
201 202 7.410120 AAGTTCTTCAACATCAAAACCTTCT 57.590 32.000 0.00 0.00 34.60 2.85
251 252 2.901281 ATACCCGCACCAAGCACCA 61.901 57.895 0.00 0.00 46.13 4.17
277 278 8.167605 ACAATATATACTCGACAAGCTACAGT 57.832 34.615 0.00 0.00 0.00 3.55
289 290 9.702726 CAAAGTGACCAAAACAATATATACTCG 57.297 33.333 0.00 0.00 0.00 4.18
358 359 6.447162 GCAAATAGCAAACTCCTACAAAACT 58.553 36.000 0.00 0.00 44.79 2.66
382 383 5.300752 AGCTCAGACAAATAATGATACCGG 58.699 41.667 0.00 0.00 0.00 5.28
383 384 7.115520 CACTAGCTCAGACAAATAATGATACCG 59.884 40.741 0.00 0.00 0.00 4.02
384 385 7.928706 ACACTAGCTCAGACAAATAATGATACC 59.071 37.037 0.00 0.00 0.00 2.73
389 390 6.372659 ACCAACACTAGCTCAGACAAATAATG 59.627 38.462 0.00 0.00 0.00 1.90
422 423 6.433404 CCTCTCCATAGCTAGGTAATTACGAA 59.567 42.308 5.62 0.00 0.00 3.85
425 426 7.379750 CAACCTCTCCATAGCTAGGTAATTAC 58.620 42.308 5.62 7.09 41.51 1.89
428 429 4.841246 CCAACCTCTCCATAGCTAGGTAAT 59.159 45.833 5.62 0.00 41.51 1.89
453 461 8.575589 TGAAGCATTTAACATAATGAACACACT 58.424 29.630 0.00 0.00 37.65 3.55
488 504 6.535150 TCGTCGATGAAAAAGAAGCATAGATT 59.465 34.615 4.45 0.00 0.00 2.40
538 564 1.710816 TTGTGTTAAGGCCCCAAAGG 58.289 50.000 0.00 0.00 39.47 3.11
586 616 1.349026 CCTTTCTTCACTGGAGCCAGA 59.651 52.381 22.62 0.00 46.30 3.86
617 647 1.139734 GCGAGAGGAAGCATCGTCA 59.860 57.895 13.47 0.00 41.77 4.35
619 649 1.435515 GAGCGAGAGGAAGCATCGT 59.564 57.895 0.00 0.00 38.66 3.73
623 653 1.687146 ATGGGAGCGAGAGGAAGCA 60.687 57.895 0.00 0.00 35.48 3.91
624 654 1.227497 CATGGGAGCGAGAGGAAGC 60.227 63.158 0.00 0.00 0.00 3.86
629 659 2.178890 GCAAGCATGGGAGCGAGAG 61.179 63.158 0.00 0.00 40.15 3.20
639 669 3.688185 ACTTAGTGATGACTGCAAGCATG 59.312 43.478 5.75 0.00 37.60 4.06
652 682 7.450074 TCCATGTTTGTAGTTCACTTAGTGAT 58.550 34.615 16.28 4.81 42.40 3.06
655 685 7.224297 ACATCCATGTTTGTAGTTCACTTAGT 58.776 34.615 0.00 0.00 37.90 2.24
659 689 8.635765 AATTACATCCATGTTTGTAGTTCACT 57.364 30.769 0.00 0.00 41.97 3.41
816 847 0.593008 GTTCGGTGTTTGGTTTCGGC 60.593 55.000 0.00 0.00 0.00 5.54
1003 4932 0.750546 TCGGGATTCTCGATGTCGGT 60.751 55.000 4.09 0.00 40.29 4.69
1089 5030 4.609018 AAGGCGACGCAGCACAGT 62.609 61.111 23.09 0.00 39.27 3.55
1311 5252 2.169789 CAGCAGACAAGGGCGATCG 61.170 63.158 11.69 11.69 34.54 3.69
1402 5343 8.706035 CCTATAACCAATTACAACACGCTATAC 58.294 37.037 0.00 0.00 0.00 1.47
1403 5344 7.385752 GCCTATAACCAATTACAACACGCTATA 59.614 37.037 0.00 0.00 0.00 1.31
1404 5345 6.204108 GCCTATAACCAATTACAACACGCTAT 59.796 38.462 0.00 0.00 0.00 2.97
1439 5384 4.791974 CCTGTGCTCAGAAACTGATTTTC 58.208 43.478 17.19 0.00 43.76 2.29
1440 5385 3.005155 GCCTGTGCTCAGAAACTGATTTT 59.995 43.478 17.19 0.00 43.76 1.82
1441 5386 2.555757 GCCTGTGCTCAGAAACTGATTT 59.444 45.455 17.19 0.00 43.76 2.17
1442 5387 2.157738 GCCTGTGCTCAGAAACTGATT 58.842 47.619 17.19 0.00 43.76 2.57
1443 5388 1.818642 GCCTGTGCTCAGAAACTGAT 58.181 50.000 17.19 0.00 43.76 2.90
1444 5389 3.312404 GCCTGTGCTCAGAAACTGA 57.688 52.632 17.19 0.00 43.76 3.41
1455 5400 3.003740 GGATCATCTGAGCCTGTGC 57.996 57.895 7.22 0.00 46.53 4.57
1461 5406 3.931468 CACAATATCGGGATCATCTGAGC 59.069 47.826 0.00 0.00 0.00 4.26
1462 5407 5.397142 TCACAATATCGGGATCATCTGAG 57.603 43.478 0.00 0.00 0.00 3.35
1463 5408 5.718607 AGATCACAATATCGGGATCATCTGA 59.281 40.000 8.59 0.00 38.84 3.27
1464 5409 5.975282 AGATCACAATATCGGGATCATCTG 58.025 41.667 8.59 0.00 38.84 2.90
1465 5410 6.351711 GGAAGATCACAATATCGGGATCATCT 60.352 42.308 8.59 0.00 38.84 2.90
1466 5411 5.814705 GGAAGATCACAATATCGGGATCATC 59.185 44.000 8.59 5.71 38.84 2.92
1467 5412 5.625426 CGGAAGATCACAATATCGGGATCAT 60.625 44.000 8.59 0.00 38.84 2.45
1468 5413 4.321974 CGGAAGATCACAATATCGGGATCA 60.322 45.833 8.59 0.00 38.84 2.92
1469 5414 4.177026 CGGAAGATCACAATATCGGGATC 58.823 47.826 0.00 0.00 37.11 3.36
1470 5415 3.578716 ACGGAAGATCACAATATCGGGAT 59.421 43.478 0.00 0.00 0.00 3.85
1471 5416 2.963101 ACGGAAGATCACAATATCGGGA 59.037 45.455 0.00 0.00 0.00 5.14
1472 5417 3.386768 ACGGAAGATCACAATATCGGG 57.613 47.619 0.00 0.00 0.00 5.14
1473 5418 3.425525 CGAACGGAAGATCACAATATCGG 59.574 47.826 0.00 0.00 32.54 4.18
1474 5419 3.121328 GCGAACGGAAGATCACAATATCG 60.121 47.826 0.00 0.00 32.54 2.92
1475 5420 3.184581 GGCGAACGGAAGATCACAATATC 59.815 47.826 0.00 0.00 32.54 1.63
1476 5421 3.131396 GGCGAACGGAAGATCACAATAT 58.869 45.455 0.00 0.00 32.54 1.28
1477 5422 2.167693 AGGCGAACGGAAGATCACAATA 59.832 45.455 0.00 0.00 32.54 1.90
1478 5423 1.066143 AGGCGAACGGAAGATCACAAT 60.066 47.619 0.00 0.00 32.54 2.71
1479 5424 0.320374 AGGCGAACGGAAGATCACAA 59.680 50.000 0.00 0.00 32.54 3.33
1480 5425 0.389817 CAGGCGAACGGAAGATCACA 60.390 55.000 0.00 0.00 32.54 3.58
1481 5426 0.108804 TCAGGCGAACGGAAGATCAC 60.109 55.000 0.00 0.00 32.54 3.06
1482 5427 0.173481 CTCAGGCGAACGGAAGATCA 59.827 55.000 0.00 0.00 32.54 2.92
1483 5428 0.528684 CCTCAGGCGAACGGAAGATC 60.529 60.000 0.00 0.00 0.00 2.75
1484 5429 0.970937 TCCTCAGGCGAACGGAAGAT 60.971 55.000 0.00 0.00 0.00 2.40
1485 5430 0.970937 ATCCTCAGGCGAACGGAAGA 60.971 55.000 0.00 0.00 0.00 2.87
1486 5431 0.807667 CATCCTCAGGCGAACGGAAG 60.808 60.000 0.00 0.00 0.00 3.46
1487 5432 1.218047 CATCCTCAGGCGAACGGAA 59.782 57.895 0.00 0.00 0.00 4.30
1488 5433 2.892640 CATCCTCAGGCGAACGGA 59.107 61.111 0.00 0.00 0.00 4.69
1489 5434 2.892425 GCATCCTCAGGCGAACGG 60.892 66.667 0.00 0.00 0.00 4.44
1490 5435 2.125552 TGCATCCTCAGGCGAACG 60.126 61.111 0.00 0.00 29.29 3.95
1491 5436 2.456119 CGTGCATCCTCAGGCGAAC 61.456 63.158 0.00 0.00 29.29 3.95
1492 5437 2.125552 CGTGCATCCTCAGGCGAA 60.126 61.111 0.00 0.00 29.29 4.70
1493 5438 4.819761 GCGTGCATCCTCAGGCGA 62.820 66.667 0.00 0.00 37.96 5.54
1495 5440 2.985512 CTAGGCGTGCATCCTCAGGC 62.986 65.000 12.99 2.87 44.44 4.85
1496 5441 1.068753 CTAGGCGTGCATCCTCAGG 59.931 63.158 12.99 0.00 35.21 3.86
1497 5442 0.031857 CTCTAGGCGTGCATCCTCAG 59.968 60.000 12.99 7.76 35.21 3.35
1498 5443 2.021068 GCTCTAGGCGTGCATCCTCA 62.021 60.000 12.99 2.52 35.21 3.86
1499 5444 1.300542 GCTCTAGGCGTGCATCCTC 60.301 63.158 12.99 0.00 35.21 3.71
1500 5445 2.818132 GCTCTAGGCGTGCATCCT 59.182 61.111 13.92 13.92 37.72 3.24
1509 5454 4.513318 GGATGACAAAATACAGCTCTAGGC 59.487 45.833 0.00 0.00 42.19 3.93
1510 5455 5.923204 AGGATGACAAAATACAGCTCTAGG 58.077 41.667 0.00 0.00 0.00 3.02
1511 5456 9.553064 AAATAGGATGACAAAATACAGCTCTAG 57.447 33.333 0.00 0.00 0.00 2.43
1512 5457 9.547753 GAAATAGGATGACAAAATACAGCTCTA 57.452 33.333 0.00 0.00 0.00 2.43
1513 5458 8.270744 AGAAATAGGATGACAAAATACAGCTCT 58.729 33.333 0.00 0.00 0.00 4.09
1514 5459 8.443953 AGAAATAGGATGACAAAATACAGCTC 57.556 34.615 0.00 0.00 0.00 4.09
1515 5460 8.814038 AAGAAATAGGATGACAAAATACAGCT 57.186 30.769 0.00 0.00 0.00 4.24
1535 5480 8.198109 CCTCTGTCGATCCTATTTCTAAAGAAA 58.802 37.037 7.56 7.56 46.60 2.52
1536 5481 7.560262 TCCTCTGTCGATCCTATTTCTAAAGAA 59.440 37.037 0.00 0.00 0.00 2.52
1537 5482 7.013464 GTCCTCTGTCGATCCTATTTCTAAAGA 59.987 40.741 0.00 0.00 0.00 2.52
1538 5483 7.142680 GTCCTCTGTCGATCCTATTTCTAAAG 58.857 42.308 0.00 0.00 0.00 1.85
1539 5484 6.238676 CGTCCTCTGTCGATCCTATTTCTAAA 60.239 42.308 0.00 0.00 0.00 1.85
1540 5485 5.238868 CGTCCTCTGTCGATCCTATTTCTAA 59.761 44.000 0.00 0.00 0.00 2.10
1541 5486 4.755629 CGTCCTCTGTCGATCCTATTTCTA 59.244 45.833 0.00 0.00 0.00 2.10
1542 5487 3.566322 CGTCCTCTGTCGATCCTATTTCT 59.434 47.826 0.00 0.00 0.00 2.52
1543 5488 3.854045 GCGTCCTCTGTCGATCCTATTTC 60.854 52.174 0.00 0.00 0.00 2.17
1544 5489 2.034812 GCGTCCTCTGTCGATCCTATTT 59.965 50.000 0.00 0.00 0.00 1.40
1545 5490 1.609555 GCGTCCTCTGTCGATCCTATT 59.390 52.381 0.00 0.00 0.00 1.73
1546 5491 1.240256 GCGTCCTCTGTCGATCCTAT 58.760 55.000 0.00 0.00 0.00 2.57
1547 5492 0.107361 TGCGTCCTCTGTCGATCCTA 60.107 55.000 0.00 0.00 0.00 2.94
1548 5493 0.753479 ATGCGTCCTCTGTCGATCCT 60.753 55.000 0.00 0.00 0.00 3.24
1549 5494 0.103208 AATGCGTCCTCTGTCGATCC 59.897 55.000 0.00 0.00 0.00 3.36
1550 5495 1.202302 TCAATGCGTCCTCTGTCGATC 60.202 52.381 0.00 0.00 0.00 3.69
1551 5496 0.817654 TCAATGCGTCCTCTGTCGAT 59.182 50.000 0.00 0.00 0.00 3.59
1552 5497 0.817654 ATCAATGCGTCCTCTGTCGA 59.182 50.000 0.00 0.00 0.00 4.20
1553 5498 1.325640 CAATCAATGCGTCCTCTGTCG 59.674 52.381 0.00 0.00 0.00 4.35
1554 5499 2.349886 GACAATCAATGCGTCCTCTGTC 59.650 50.000 0.00 0.00 0.00 3.51
1555 5500 2.289631 TGACAATCAATGCGTCCTCTGT 60.290 45.455 0.00 0.00 0.00 3.41
1556 5501 2.094894 GTGACAATCAATGCGTCCTCTG 59.905 50.000 0.00 0.00 0.00 3.35
1557 5502 2.350522 GTGACAATCAATGCGTCCTCT 58.649 47.619 0.00 0.00 0.00 3.69
1558 5503 1.061131 CGTGACAATCAATGCGTCCTC 59.939 52.381 0.00 0.00 0.00 3.71
1559 5504 1.078709 CGTGACAATCAATGCGTCCT 58.921 50.000 0.00 0.00 0.00 3.85
1560 5505 0.096976 CCGTGACAATCAATGCGTCC 59.903 55.000 0.00 0.00 0.00 4.79
1561 5506 0.096976 CCCGTGACAATCAATGCGTC 59.903 55.000 0.00 0.00 0.00 5.19
1562 5507 1.922135 GCCCGTGACAATCAATGCGT 61.922 55.000 0.00 0.00 0.00 5.24
1563 5508 1.226379 GCCCGTGACAATCAATGCG 60.226 57.895 0.00 0.00 0.00 4.73
1564 5509 1.226379 CGCCCGTGACAATCAATGC 60.226 57.895 0.00 0.00 0.00 3.56
1565 5510 0.801872 TTCGCCCGTGACAATCAATG 59.198 50.000 0.00 0.00 0.00 2.82
1566 5511 1.199097 GTTTCGCCCGTGACAATCAAT 59.801 47.619 0.00 0.00 0.00 2.57
1567 5512 0.589223 GTTTCGCCCGTGACAATCAA 59.411 50.000 0.00 0.00 0.00 2.57
1568 5513 0.533085 TGTTTCGCCCGTGACAATCA 60.533 50.000 0.00 0.00 0.00 2.57
1569 5514 0.110373 GTGTTTCGCCCGTGACAATC 60.110 55.000 1.85 0.00 0.00 2.67
1570 5515 0.534203 AGTGTTTCGCCCGTGACAAT 60.534 50.000 1.85 0.00 0.00 2.71
1571 5516 1.153329 AGTGTTTCGCCCGTGACAA 60.153 52.632 1.85 0.00 0.00 3.18
1572 5517 1.885388 CAGTGTTTCGCCCGTGACA 60.885 57.895 0.00 0.00 0.00 3.58
1573 5518 1.885850 ACAGTGTTTCGCCCGTGAC 60.886 57.895 0.00 0.00 0.00 3.67
1574 5519 1.885388 CACAGTGTTTCGCCCGTGA 60.885 57.895 0.00 0.00 0.00 4.35
1575 5520 2.631428 CACAGTGTTTCGCCCGTG 59.369 61.111 0.00 0.00 0.00 4.94
1576 5521 3.276846 GCACAGTGTTTCGCCCGT 61.277 61.111 1.61 0.00 0.00 5.28
1577 5522 4.368808 CGCACAGTGTTTCGCCCG 62.369 66.667 1.61 0.00 0.00 6.13
1578 5523 3.236618 GACGCACAGTGTTTCGCCC 62.237 63.158 12.94 4.09 0.00 6.13
1579 5524 2.248431 GACGCACAGTGTTTCGCC 59.752 61.111 12.94 0.78 0.00 5.54
1580 5525 2.248431 GGACGCACAGTGTTTCGC 59.752 61.111 12.94 4.56 0.00 4.70
1581 5526 2.544359 CGGACGCACAGTGTTTCG 59.456 61.111 11.79 11.79 0.00 3.46
1582 5527 2.604174 CCCGGACGCACAGTGTTTC 61.604 63.158 0.73 0.00 0.00 2.78
1583 5528 2.590575 CCCGGACGCACAGTGTTT 60.591 61.111 0.73 0.00 0.00 2.83
1590 5535 4.778143 ATTCTGGCCCGGACGCAC 62.778 66.667 0.73 0.00 0.00 5.34
1591 5536 4.467084 GATTCTGGCCCGGACGCA 62.467 66.667 0.73 0.00 0.00 5.24
1592 5537 4.467084 TGATTCTGGCCCGGACGC 62.467 66.667 0.73 0.00 0.00 5.19
1593 5538 2.202932 CTGATTCTGGCCCGGACG 60.203 66.667 0.73 0.00 0.00 4.79
1594 5539 2.190578 CCTGATTCTGGCCCGGAC 59.809 66.667 0.73 0.00 0.00 4.79
1595 5540 3.089874 CCCTGATTCTGGCCCGGA 61.090 66.667 0.73 0.00 0.00 5.14
1596 5541 4.883354 GCCCTGATTCTGGCCCGG 62.883 72.222 0.00 0.00 41.97 5.73
1599 5544 4.802051 TGCGCCCTGATTCTGGCC 62.802 66.667 4.18 0.00 45.07 5.36
1600 5545 3.512516 GTGCGCCCTGATTCTGGC 61.513 66.667 4.18 5.98 44.41 4.85
1601 5546 3.197790 CGTGCGCCCTGATTCTGG 61.198 66.667 4.18 2.69 0.00 3.86
1602 5547 3.197790 CCGTGCGCCCTGATTCTG 61.198 66.667 4.18 0.00 0.00 3.02
1611 5556 2.996168 AATAGGATGAGCCGTGCGCC 62.996 60.000 4.18 0.00 43.43 6.53
1612 5557 1.160329 AAATAGGATGAGCCGTGCGC 61.160 55.000 0.00 0.00 43.43 6.09
1613 5558 0.861837 GAAATAGGATGAGCCGTGCG 59.138 55.000 0.00 0.00 43.43 5.34
1614 5559 1.202698 AGGAAATAGGATGAGCCGTGC 60.203 52.381 0.00 0.00 43.43 5.34
1615 5560 2.103094 TCAGGAAATAGGATGAGCCGTG 59.897 50.000 0.00 0.00 43.43 4.94
1616 5561 2.366916 CTCAGGAAATAGGATGAGCCGT 59.633 50.000 0.00 0.00 43.43 5.68
1617 5562 3.037431 CTCAGGAAATAGGATGAGCCG 57.963 52.381 0.00 0.00 43.43 5.52
1620 5565 2.707791 TGGGCTCAGGAAATAGGATGAG 59.292 50.000 0.00 0.00 41.68 2.90
1621 5566 2.439507 GTGGGCTCAGGAAATAGGATGA 59.560 50.000 0.00 0.00 0.00 2.92
1622 5567 2.487986 GGTGGGCTCAGGAAATAGGATG 60.488 54.545 0.00 0.00 0.00 3.51
1623 5568 1.777272 GGTGGGCTCAGGAAATAGGAT 59.223 52.381 0.00 0.00 0.00 3.24
1624 5569 1.213296 GGTGGGCTCAGGAAATAGGA 58.787 55.000 0.00 0.00 0.00 2.94
1625 5570 0.183731 GGGTGGGCTCAGGAAATAGG 59.816 60.000 0.00 0.00 0.00 2.57
1626 5571 0.918983 TGGGTGGGCTCAGGAAATAG 59.081 55.000 0.00 0.00 0.00 1.73
1627 5572 1.284785 CTTGGGTGGGCTCAGGAAATA 59.715 52.381 0.00 0.00 0.00 1.40
1628 5573 0.040204 CTTGGGTGGGCTCAGGAAAT 59.960 55.000 0.00 0.00 0.00 2.17
1629 5574 1.460255 CTTGGGTGGGCTCAGGAAA 59.540 57.895 0.00 0.00 0.00 3.13
1630 5575 3.170362 CTTGGGTGGGCTCAGGAA 58.830 61.111 0.00 0.00 0.00 3.36
1631 5576 3.650950 GCTTGGGTGGGCTCAGGA 61.651 66.667 0.00 0.00 0.00 3.86
1632 5577 4.748144 GGCTTGGGTGGGCTCAGG 62.748 72.222 0.00 0.00 0.00 3.86
1638 5583 3.636231 TGAGACGGCTTGGGTGGG 61.636 66.667 0.00 0.00 0.00 4.61
1639 5584 2.358737 GTGAGACGGCTTGGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
1640 5585 2.738521 CGTGAGACGGCTTGGGTG 60.739 66.667 0.00 0.00 38.08 4.61
1641 5586 4.681978 GCGTGAGACGGCTTGGGT 62.682 66.667 0.00 0.00 42.82 4.51
1657 5602 1.443194 CATTTGTGCAGCTGTCGGC 60.443 57.895 16.64 0.34 42.19 5.54
1658 5603 1.443194 GCATTTGTGCAGCTGTCGG 60.443 57.895 16.64 0.00 34.41 4.79
1659 5604 1.443194 GGCATTTGTGCAGCTGTCG 60.443 57.895 16.64 0.00 36.33 4.35
1660 5605 1.080298 GGGCATTTGTGCAGCTGTC 60.080 57.895 16.64 8.39 36.33 3.51
1661 5606 1.833492 TGGGCATTTGTGCAGCTGT 60.833 52.632 16.64 0.00 36.33 4.40
1662 5607 1.373748 GTGGGCATTTGTGCAGCTG 60.374 57.895 10.11 10.11 36.33 4.24
1663 5608 2.576832 GGTGGGCATTTGTGCAGCT 61.577 57.895 2.61 0.00 36.33 4.24
1664 5609 2.047939 GGTGGGCATTTGTGCAGC 60.048 61.111 2.61 0.00 36.33 5.25
1665 5610 2.259204 CGGTGGGCATTTGTGCAG 59.741 61.111 2.61 0.00 36.33 4.41
1666 5611 3.301554 CCGGTGGGCATTTGTGCA 61.302 61.111 0.00 0.00 36.33 4.57
1688 5633 4.019174 GGTAGATGCATTTATGATGGGGG 58.981 47.826 0.00 0.00 0.00 5.40
1689 5634 4.665451 TGGTAGATGCATTTATGATGGGG 58.335 43.478 0.00 0.00 0.00 4.96
1690 5635 4.157289 GCTGGTAGATGCATTTATGATGGG 59.843 45.833 0.00 0.00 0.00 4.00
1691 5636 5.008331 AGCTGGTAGATGCATTTATGATGG 58.992 41.667 0.00 0.00 0.00 3.51
1692 5637 5.704053 TGAGCTGGTAGATGCATTTATGATG 59.296 40.000 0.00 0.00 0.00 3.07
1693 5638 5.704515 GTGAGCTGGTAGATGCATTTATGAT 59.295 40.000 0.00 0.00 0.00 2.45
1694 5639 5.059161 GTGAGCTGGTAGATGCATTTATGA 58.941 41.667 0.00 0.00 0.00 2.15
1695 5640 4.084171 CGTGAGCTGGTAGATGCATTTATG 60.084 45.833 0.00 0.00 0.00 1.90
1696 5641 4.060900 CGTGAGCTGGTAGATGCATTTAT 58.939 43.478 0.00 0.00 0.00 1.40
1697 5642 3.457234 CGTGAGCTGGTAGATGCATTTA 58.543 45.455 0.00 0.00 0.00 1.40
1698 5643 2.283298 CGTGAGCTGGTAGATGCATTT 58.717 47.619 0.00 0.00 0.00 2.32
1699 5644 1.945387 CGTGAGCTGGTAGATGCATT 58.055 50.000 0.00 0.00 0.00 3.56
1700 5645 3.675086 CGTGAGCTGGTAGATGCAT 57.325 52.632 0.00 0.00 0.00 3.96
1713 5658 2.054232 TAAGTAGAGAGGGGCGTGAG 57.946 55.000 0.00 0.00 0.00 3.51
1714 5659 2.097825 GTTAAGTAGAGAGGGGCGTGA 58.902 52.381 0.00 0.00 0.00 4.35
1715 5660 1.822990 TGTTAAGTAGAGAGGGGCGTG 59.177 52.381 0.00 0.00 0.00 5.34
1716 5661 1.823610 GTGTTAAGTAGAGAGGGGCGT 59.176 52.381 0.00 0.00 0.00 5.68
1717 5662 1.822990 TGTGTTAAGTAGAGAGGGGCG 59.177 52.381 0.00 0.00 0.00 6.13
1718 5663 2.093606 GGTGTGTTAAGTAGAGAGGGGC 60.094 54.545 0.00 0.00 0.00 5.80
1719 5664 2.500504 GGGTGTGTTAAGTAGAGAGGGG 59.499 54.545 0.00 0.00 0.00 4.79
1720 5665 3.170717 TGGGTGTGTTAAGTAGAGAGGG 58.829 50.000 0.00 0.00 0.00 4.30
1721 5666 3.368531 GCTGGGTGTGTTAAGTAGAGAGG 60.369 52.174 0.00 0.00 0.00 3.69
1722 5667 3.511934 AGCTGGGTGTGTTAAGTAGAGAG 59.488 47.826 0.00 0.00 0.00 3.20
1723 5668 3.258372 CAGCTGGGTGTGTTAAGTAGAGA 59.742 47.826 5.57 0.00 0.00 3.10
1724 5669 3.589988 CAGCTGGGTGTGTTAAGTAGAG 58.410 50.000 5.57 0.00 0.00 2.43
1725 5670 2.289444 GCAGCTGGGTGTGTTAAGTAGA 60.289 50.000 17.12 0.00 0.00 2.59
1726 5671 2.076863 GCAGCTGGGTGTGTTAAGTAG 58.923 52.381 17.12 0.00 0.00 2.57
1727 5672 1.697432 AGCAGCTGGGTGTGTTAAGTA 59.303 47.619 17.12 0.00 0.00 2.24
1728 5673 0.474184 AGCAGCTGGGTGTGTTAAGT 59.526 50.000 17.12 0.00 0.00 2.24
1729 5674 1.160137 GAGCAGCTGGGTGTGTTAAG 58.840 55.000 17.12 0.00 0.00 1.85
1730 5675 0.472044 TGAGCAGCTGGGTGTGTTAA 59.528 50.000 17.12 0.00 0.00 2.01
1731 5676 0.472044 TTGAGCAGCTGGGTGTGTTA 59.528 50.000 17.12 0.00 0.00 2.41
1732 5677 0.178981 ATTGAGCAGCTGGGTGTGTT 60.179 50.000 17.12 0.00 0.00 3.32
1733 5678 0.178981 AATTGAGCAGCTGGGTGTGT 60.179 50.000 17.12 0.00 0.00 3.72
1734 5679 0.963962 AAATTGAGCAGCTGGGTGTG 59.036 50.000 17.12 0.00 0.00 3.82
1735 5680 1.615392 GAAAATTGAGCAGCTGGGTGT 59.385 47.619 17.12 0.00 0.00 4.16
1736 5681 1.067354 GGAAAATTGAGCAGCTGGGTG 60.067 52.381 17.12 0.00 0.00 4.61
1737 5682 1.260544 GGAAAATTGAGCAGCTGGGT 58.739 50.000 17.12 1.25 0.00 4.51
1738 5683 0.533951 GGGAAAATTGAGCAGCTGGG 59.466 55.000 17.12 0.00 0.00 4.45
1739 5684 0.533951 GGGGAAAATTGAGCAGCTGG 59.466 55.000 17.12 0.00 0.00 4.85
1740 5685 0.533951 GGGGGAAAATTGAGCAGCTG 59.466 55.000 10.11 10.11 0.00 4.24
1741 5686 0.114954 TGGGGGAAAATTGAGCAGCT 59.885 50.000 0.00 0.00 0.00 4.24
1742 5687 1.137675 GATGGGGGAAAATTGAGCAGC 59.862 52.381 0.00 0.00 0.00 5.25
1743 5688 1.758862 GGATGGGGGAAAATTGAGCAG 59.241 52.381 0.00 0.00 0.00 4.24
1744 5689 1.622173 GGGATGGGGGAAAATTGAGCA 60.622 52.381 0.00 0.00 0.00 4.26
1745 5690 1.123077 GGGATGGGGGAAAATTGAGC 58.877 55.000 0.00 0.00 0.00 4.26
1746 5691 1.793414 GGGGATGGGGGAAAATTGAG 58.207 55.000 0.00 0.00 0.00 3.02
1747 5692 0.032615 CGGGGATGGGGGAAAATTGA 60.033 55.000 0.00 0.00 0.00 2.57
1748 5693 0.325203 ACGGGGATGGGGGAAAATTG 60.325 55.000 0.00 0.00 0.00 2.32
1749 5694 1.310877 TACGGGGATGGGGGAAAATT 58.689 50.000 0.00 0.00 0.00 1.82
1750 5695 1.427753 GATACGGGGATGGGGGAAAAT 59.572 52.381 0.00 0.00 0.00 1.82
1751 5696 0.848053 GATACGGGGATGGGGGAAAA 59.152 55.000 0.00 0.00 0.00 2.29
1752 5697 0.327673 TGATACGGGGATGGGGGAAA 60.328 55.000 0.00 0.00 0.00 3.13
1753 5698 0.766674 CTGATACGGGGATGGGGGAA 60.767 60.000 0.00 0.00 0.00 3.97
1754 5699 1.152118 CTGATACGGGGATGGGGGA 60.152 63.158 0.00 0.00 0.00 4.81
1755 5700 2.224159 CCTGATACGGGGATGGGGG 61.224 68.421 0.00 0.00 0.00 5.40
1756 5701 3.483587 CCTGATACGGGGATGGGG 58.516 66.667 0.00 0.00 0.00 4.96
1764 5709 2.728817 GAGACGGCCCTGATACGG 59.271 66.667 0.00 0.00 0.00 4.02
1765 5710 2.076622 CTGGAGACGGCCCTGATACG 62.077 65.000 0.00 0.00 0.00 3.06
1766 5711 0.755698 TCTGGAGACGGCCCTGATAC 60.756 60.000 0.00 0.00 36.33 2.24
1767 5712 0.032515 TTCTGGAGACGGCCCTGATA 60.033 55.000 0.00 0.00 36.33 2.15
1768 5713 0.909610 TTTCTGGAGACGGCCCTGAT 60.910 55.000 0.00 0.00 36.33 2.90
1769 5714 0.909610 ATTTCTGGAGACGGCCCTGA 60.910 55.000 0.00 1.96 36.33 3.86
1799 5744 3.380320 AGGCCTATTTTACATTTCGCACC 59.620 43.478 1.29 0.00 0.00 5.01
2091 6039 7.830739 ACCATATTTCATTCAAAGGAGTCAAC 58.169 34.615 0.00 0.00 0.00 3.18
2099 6047 8.984891 TTTGTGCTACCATATTTCATTCAAAG 57.015 30.769 0.00 0.00 0.00 2.77
2174 6122 9.301897 AGGCTTATATTCAGAAACAAAGAAAGT 57.698 29.630 6.11 0.00 0.00 2.66
2194 6142 8.816894 CCATAGTGGAATCTCTATAAAGGCTTA 58.183 37.037 0.00 0.00 40.96 3.09
2195 6143 7.514127 TCCATAGTGGAATCTCTATAAAGGCTT 59.486 37.037 0.00 0.00 45.00 4.35
2196 6144 7.019388 TCCATAGTGGAATCTCTATAAAGGCT 58.981 38.462 0.00 0.00 45.00 4.58
2197 6145 7.246171 TCCATAGTGGAATCTCTATAAAGGC 57.754 40.000 0.00 0.00 45.00 4.35
2211 6159 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
2212 6160 2.036387 TCCGTATGTGGTCCATAGTGG 58.964 52.381 0.00 0.00 36.71 4.00
2213 6161 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
2214 6162 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
2215 6163 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
2216 6164 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
2217 6165 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
2218 6166 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
2219 6167 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
2220 6168 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
2221 6169 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2222 6170 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2223 6171 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2253 6201 7.148018 ACGGAGCAAAATGAATGAATCTACATT 60.148 33.333 0.00 0.00 42.19 2.71
2254 6202 6.319658 ACGGAGCAAAATGAATGAATCTACAT 59.680 34.615 0.00 0.00 0.00 2.29
2255 6203 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2256 6204 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2257 6205 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2258 6206 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2259 6207 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2260 6208 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2261 6209 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2262 6210 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2263 6211 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2264 6212 6.597672 TGAACTACATACGGAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
2265 6213 5.935206 TGAACTACATACGGAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
2266 6214 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
2267 6215 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
2268 6216 7.224753 CACTATGAACTACATACGGAGCAAAAT 59.775 37.037 0.00 0.00 40.07 1.82
2269 6217 6.533723 CACTATGAACTACATACGGAGCAAAA 59.466 38.462 0.00 0.00 40.07 2.44
2270 6218 6.040247 CACTATGAACTACATACGGAGCAAA 58.960 40.000 0.00 0.00 40.07 3.68
2271 6219 5.358725 TCACTATGAACTACATACGGAGCAA 59.641 40.000 0.00 0.00 40.07 3.91
2272 6220 4.885325 TCACTATGAACTACATACGGAGCA 59.115 41.667 0.00 0.00 40.07 4.26
2273 6221 5.434352 TCACTATGAACTACATACGGAGC 57.566 43.478 0.00 0.00 40.07 4.70
2274 6222 8.353684 AGATTTCACTATGAACTACATACGGAG 58.646 37.037 0.00 0.00 35.89 4.63
2275 6223 8.234136 AGATTTCACTATGAACTACATACGGA 57.766 34.615 0.00 0.00 35.89 4.69
2276 6224 8.353684 AGAGATTTCACTATGAACTACATACGG 58.646 37.037 0.00 0.00 35.89 4.02
2300 6248 9.643693 CCGTTCCTAAGTATAAGTTTTTGTAGA 57.356 33.333 0.00 0.00 0.00 2.59
2301 6249 9.643693 TCCGTTCCTAAGTATAAGTTTTTGTAG 57.356 33.333 0.00 0.00 0.00 2.74
2302 6250 9.643693 CTCCGTTCCTAAGTATAAGTTTTTGTA 57.356 33.333 0.00 0.00 0.00 2.41
2303 6251 7.605309 CCTCCGTTCCTAAGTATAAGTTTTTGT 59.395 37.037 0.00 0.00 0.00 2.83
2304 6252 7.065443 CCCTCCGTTCCTAAGTATAAGTTTTTG 59.935 40.741 0.00 0.00 0.00 2.44
2305 6253 7.038088 TCCCTCCGTTCCTAAGTATAAGTTTTT 60.038 37.037 0.00 0.00 0.00 1.94
2306 6254 6.441604 TCCCTCCGTTCCTAAGTATAAGTTTT 59.558 38.462 0.00 0.00 0.00 2.43
2307 6255 5.960202 TCCCTCCGTTCCTAAGTATAAGTTT 59.040 40.000 0.00 0.00 0.00 2.66
2308 6256 5.522641 TCCCTCCGTTCCTAAGTATAAGTT 58.477 41.667 0.00 0.00 0.00 2.66
2309 6257 5.134725 TCCCTCCGTTCCTAAGTATAAGT 57.865 43.478 0.00 0.00 0.00 2.24
2310 6258 5.139001 ACTCCCTCCGTTCCTAAGTATAAG 58.861 45.833 0.00 0.00 0.00 1.73
2311 6259 5.134725 ACTCCCTCCGTTCCTAAGTATAA 57.865 43.478 0.00 0.00 0.00 0.98
2312 6260 4.803329 ACTCCCTCCGTTCCTAAGTATA 57.197 45.455 0.00 0.00 0.00 1.47
2313 6261 3.684408 ACTCCCTCCGTTCCTAAGTAT 57.316 47.619 0.00 0.00 0.00 2.12
2314 6262 3.525199 ACTACTCCCTCCGTTCCTAAGTA 59.475 47.826 0.00 0.00 0.00 2.24
2315 6263 2.311243 ACTACTCCCTCCGTTCCTAAGT 59.689 50.000 0.00 0.00 0.00 2.24
2316 6264 3.015675 ACTACTCCCTCCGTTCCTAAG 57.984 52.381 0.00 0.00 0.00 2.18
2317 6265 3.117738 CCTACTACTCCCTCCGTTCCTAA 60.118 52.174 0.00 0.00 0.00 2.69
2318 6266 2.441001 CCTACTACTCCCTCCGTTCCTA 59.559 54.545 0.00 0.00 0.00 2.94
2319 6267 1.214923 CCTACTACTCCCTCCGTTCCT 59.785 57.143 0.00 0.00 0.00 3.36
2320 6268 1.213926 TCCTACTACTCCCTCCGTTCC 59.786 57.143 0.00 0.00 0.00 3.62
2321 6269 2.725221 TCCTACTACTCCCTCCGTTC 57.275 55.000 0.00 0.00 0.00 3.95
2322 6270 3.684408 ATTCCTACTACTCCCTCCGTT 57.316 47.619 0.00 0.00 0.00 4.44
2323 6271 3.684408 AATTCCTACTACTCCCTCCGT 57.316 47.619 0.00 0.00 0.00 4.69
2324 6272 4.467769 TGTAATTCCTACTACTCCCTCCG 58.532 47.826 0.00 0.00 0.00 4.63
2325 6273 6.239629 CCAATGTAATTCCTACTACTCCCTCC 60.240 46.154 0.00 0.00 31.22 4.30
2326 6274 6.553852 TCCAATGTAATTCCTACTACTCCCTC 59.446 42.308 0.00 0.00 31.22 4.30
2327 6275 6.449956 TCCAATGTAATTCCTACTACTCCCT 58.550 40.000 0.00 0.00 31.22 4.20
2328 6276 6.742559 TCCAATGTAATTCCTACTACTCCC 57.257 41.667 0.00 0.00 31.22 4.30
2329 6277 9.057089 CAAATCCAATGTAATTCCTACTACTCC 57.943 37.037 0.00 0.00 31.22 3.85
2330 6278 9.832445 TCAAATCCAATGTAATTCCTACTACTC 57.168 33.333 0.00 0.00 31.22 2.59
2331 6279 9.614792 GTCAAATCCAATGTAATTCCTACTACT 57.385 33.333 0.00 0.00 31.22 2.57
2332 6280 9.391006 TGTCAAATCCAATGTAATTCCTACTAC 57.609 33.333 0.00 0.00 31.22 2.73
2367 6315 9.772973 TTTTTGCATGGTAATATCTACTATCGT 57.227 29.630 0.00 0.00 0.00 3.73
2405 6355 0.387367 CCAGTCTCCACGAGTTCACG 60.387 60.000 0.00 0.00 39.31 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.