Multiple sequence alignment - TraesCS6A01G091500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G091500 chr6A 100.000 7705 0 0 1 7705 60174541 60166837 0.000000e+00 14229.0
1 TraesCS6A01G091500 chr6A 82.949 217 12 10 7256 7466 59825093 59825290 1.030000e-38 172.0
2 TraesCS6A01G091500 chr6A 95.238 63 2 1 7586 7648 59825320 59825381 1.770000e-16 99.0
3 TraesCS6A01G091500 chr6A 93.333 60 2 2 7647 7705 603762642 603762700 3.830000e-13 87.9
4 TraesCS6A01G091500 chr6A 96.000 50 2 0 5690 5739 566864 566815 1.780000e-11 82.4
5 TraesCS6A01G091500 chr6A 89.655 58 6 0 7648 7705 603764766 603764709 2.980000e-09 75.0
6 TraesCS6A01G091500 chr6D 95.553 5127 135 25 830 5881 46020095 46014987 0.000000e+00 8118.0
7 TraesCS6A01G091500 chr6D 93.566 715 38 5 6027 6739 46014944 46014236 0.000000e+00 1059.0
8 TraesCS6A01G091500 chr6D 86.730 422 24 23 7033 7438 46014000 46013595 2.550000e-119 440.0
9 TraesCS6A01G091500 chr6D 86.127 173 12 7 7491 7662 46013582 46013421 7.950000e-40 176.0
10 TraesCS6A01G091500 chr6D 91.589 107 5 3 6947 7049 46014118 46014012 2.240000e-30 145.0
11 TraesCS6A01G091500 chr6B 94.509 3424 101 36 2158 5540 114371459 114368082 0.000000e+00 5201.0
12 TraesCS6A01G091500 chr6B 93.553 1303 60 11 833 2122 114372750 114371459 0.000000e+00 1919.0
13 TraesCS6A01G091500 chr6B 93.980 1113 57 8 5631 6739 114368079 114366973 0.000000e+00 1676.0
14 TraesCS6A01G091500 chr6B 80.876 251 20 13 6958 7181 114366416 114366167 1.030000e-38 172.0
15 TraesCS6A01G091500 chr6B 96.429 56 1 1 7263 7318 114032484 114032538 2.960000e-14 91.6
16 TraesCS6A01G091500 chr6B 80.172 116 8 8 7477 7592 114334306 114334206 1.070000e-08 73.1
17 TraesCS6A01G091500 chr6B 92.157 51 4 0 7655 7705 177831276 177831226 1.070000e-08 73.1
18 TraesCS6A01G091500 chr2A 96.210 818 30 1 1 817 701057542 701058359 0.000000e+00 1338.0
19 TraesCS6A01G091500 chr2A 95.626 823 34 2 1 821 733295015 733294193 0.000000e+00 1319.0
20 TraesCS6A01G091500 chr2A 95.711 816 35 0 1 816 643201435 643200620 0.000000e+00 1314.0
21 TraesCS6A01G091500 chr2A 92.157 51 3 1 7655 7705 753998718 753998669 3.860000e-08 71.3
22 TraesCS6A01G091500 chr7A 95.966 818 32 1 1 817 23550851 23551668 0.000000e+00 1327.0
23 TraesCS6A01G091500 chr7A 95.838 817 33 1 1 817 652227262 652228077 0.000000e+00 1319.0
24 TraesCS6A01G091500 chr7A 95.556 45 1 1 7655 7699 5755201 5755244 3.860000e-08 71.3
25 TraesCS6A01G091500 chr3A 95.604 819 34 2 1 818 679673769 679672952 0.000000e+00 1312.0
26 TraesCS6A01G091500 chr3A 95.477 818 36 1 1 817 727577672 727578489 0.000000e+00 1304.0
27 TraesCS6A01G091500 chr4A 95.377 822 37 1 1 821 231094644 231095465 0.000000e+00 1306.0
28 TraesCS6A01G091500 chr4A 100.000 50 0 0 5690 5739 153246216 153246167 8.230000e-15 93.5
29 TraesCS6A01G091500 chr1A 95.366 820 37 1 1 819 472448236 472449055 0.000000e+00 1303.0
30 TraesCS6A01G091500 chr1A 98.000 50 1 0 5690 5739 21276011 21275962 3.830000e-13 87.9
31 TraesCS6A01G091500 chr1A 98.000 50 1 0 5690 5739 561331454 561331405 3.830000e-13 87.9
32 TraesCS6A01G091500 chr1A 95.833 48 2 0 7658 7705 9447382 9447335 2.310000e-10 78.7
33 TraesCS6A01G091500 chr1A 100.000 41 0 0 7659 7699 484302280 484302320 8.290000e-10 76.8
34 TraesCS6A01G091500 chr4D 85.698 860 95 17 5884 6739 163805734 163806569 0.000000e+00 881.0
35 TraesCS6A01G091500 chr4D 85.698 853 95 18 5892 6739 163883341 163884171 0.000000e+00 874.0
36 TraesCS6A01G091500 chr4D 100.000 50 0 0 5690 5739 320042976 320043025 8.230000e-15 93.5
37 TraesCS6A01G091500 chr3B 84.750 859 107 15 5884 6739 437966158 437966995 0.000000e+00 839.0
38 TraesCS6A01G091500 chr4B 81.533 861 106 38 5884 6739 655411484 655410672 0.000000e+00 660.0
39 TraesCS6A01G091500 chr4B 100.000 50 0 0 5690 5739 400685625 400685576 8.230000e-15 93.5
40 TraesCS6A01G091500 chr1D 82.500 400 48 9 4796 5187 179139314 179139699 1.600000e-86 331.0
41 TraesCS6A01G091500 chr2D 90.000 60 6 0 5680 5739 648132357 648132298 2.310000e-10 78.7
42 TraesCS6A01G091500 chr5A 95.745 47 2 0 7659 7705 653566067 653566021 8.290000e-10 76.8
43 TraesCS6A01G091500 chr3D 95.745 47 2 0 7659 7705 352135804 352135758 8.290000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G091500 chr6A 60166837 60174541 7704 True 14229.0 14229 100.0000 1 7705 1 chr6A.!!$R2 7704
1 TraesCS6A01G091500 chr6D 46013421 46020095 6674 True 1987.6 8118 90.7130 830 7662 5 chr6D.!!$R1 6832
2 TraesCS6A01G091500 chr6B 114366167 114372750 6583 True 2242.0 5201 90.7295 833 7181 4 chr6B.!!$R3 6348
3 TraesCS6A01G091500 chr2A 701057542 701058359 817 False 1338.0 1338 96.2100 1 817 1 chr2A.!!$F1 816
4 TraesCS6A01G091500 chr2A 733294193 733295015 822 True 1319.0 1319 95.6260 1 821 1 chr2A.!!$R2 820
5 TraesCS6A01G091500 chr2A 643200620 643201435 815 True 1314.0 1314 95.7110 1 816 1 chr2A.!!$R1 815
6 TraesCS6A01G091500 chr7A 23550851 23551668 817 False 1327.0 1327 95.9660 1 817 1 chr7A.!!$F2 816
7 TraesCS6A01G091500 chr7A 652227262 652228077 815 False 1319.0 1319 95.8380 1 817 1 chr7A.!!$F3 816
8 TraesCS6A01G091500 chr3A 679672952 679673769 817 True 1312.0 1312 95.6040 1 818 1 chr3A.!!$R1 817
9 TraesCS6A01G091500 chr3A 727577672 727578489 817 False 1304.0 1304 95.4770 1 817 1 chr3A.!!$F1 816
10 TraesCS6A01G091500 chr4A 231094644 231095465 821 False 1306.0 1306 95.3770 1 821 1 chr4A.!!$F1 820
11 TraesCS6A01G091500 chr1A 472448236 472449055 819 False 1303.0 1303 95.3660 1 819 1 chr1A.!!$F1 818
12 TraesCS6A01G091500 chr4D 163805734 163806569 835 False 881.0 881 85.6980 5884 6739 1 chr4D.!!$F1 855
13 TraesCS6A01G091500 chr4D 163883341 163884171 830 False 874.0 874 85.6980 5892 6739 1 chr4D.!!$F2 847
14 TraesCS6A01G091500 chr3B 437966158 437966995 837 False 839.0 839 84.7500 5884 6739 1 chr3B.!!$F1 855
15 TraesCS6A01G091500 chr4B 655410672 655411484 812 True 660.0 660 81.5330 5884 6739 1 chr4B.!!$R2 855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 687 0.390340 AACTGACTCGCACATCGCAT 60.390 50.000 0.00 0.00 42.60 4.73 F
1272 1287 1.002251 CGCTCTCAGACCGTAAGATCC 60.002 57.143 0.00 0.00 43.02 3.36 F
1478 1495 1.152881 GGCCAAGCCCATCGATCTT 60.153 57.895 0.00 0.00 44.06 2.40 F
2360 2378 1.476488 ACCATTGAAGGCGCCATTAAC 59.524 47.619 31.54 14.72 0.00 2.01 F
2498 2516 0.758310 TGCTTGGTCCCATGTTTGCA 60.758 50.000 0.00 0.00 0.00 4.08 F
2862 2882 3.282021 TCCACTTATTGCTGCTTCCATC 58.718 45.455 0.00 0.00 0.00 3.51 F
3436 3458 1.533625 TGAAAGGTGCCATTTCTCCG 58.466 50.000 11.67 0.00 37.51 4.63 F
3861 3888 2.909006 TCTGGCTTCTTCTGGACAGATT 59.091 45.455 2.42 0.00 37.29 2.40 F
5730 5857 0.742281 CTCATCTGCACCCGGTGAAG 60.742 60.000 22.37 20.50 40.40 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1683 0.597637 CCATCGATTCGAGTTCCCCG 60.598 60.000 14.81 0.0 39.91 5.73 R
2169 2187 2.489938 TGCTGGTCCATTCAGGTAAC 57.510 50.000 0.00 0.0 39.02 2.50 R
2467 2485 2.827921 GGACCAAGCACCATCAGAAATT 59.172 45.455 0.00 0.0 0.00 1.82 R
3404 3426 3.796717 GCACCTTTCAAAAGTAGTGTTGC 59.203 43.478 11.16 0.0 33.49 4.17 R
3412 3434 4.202253 GGAGAAATGGCACCTTTCAAAAGT 60.202 41.667 14.18 0.0 35.51 2.66 R
4612 4699 3.006247 GCGAATCTTTTCTCTGGCTCTT 58.994 45.455 0.00 0.0 0.00 2.85 R
5190 5278 1.433879 CAGACGGTTCTAGAGGGCG 59.566 63.158 0.00 0.0 0.00 6.13 R
5757 5884 2.325661 TCAGGAGATCCCAACTGTGA 57.674 50.000 0.00 0.0 37.41 3.58 R
7194 7737 0.035317 TGCAGGCGACTTTCAGTCAT 59.965 50.000 0.00 0.0 45.30 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.725740 CGAACTGACTGCAAACACAAATC 59.274 43.478 0.00 0.00 0.00 2.17
122 123 3.435026 GCCCAATCCATAGGCAAGACTAA 60.435 47.826 0.00 0.00 46.34 2.24
297 298 1.552578 TCGAGGAATCGAACAGGGAA 58.447 50.000 0.00 0.00 39.34 3.97
510 513 2.048597 CAGTAACTGCGGTGCGGA 60.049 61.111 0.00 0.00 38.46 5.54
611 614 4.615901 CGCATAGCAGTTCCACCA 57.384 55.556 0.00 0.00 0.00 4.17
684 687 0.390340 AACTGACTCGCACATCGCAT 60.390 50.000 0.00 0.00 42.60 4.73
772 775 1.737735 CGGAGATGCTTGCGTGTGA 60.738 57.895 0.00 0.00 0.00 3.58
777 780 1.079197 ATGCTTGCGTGTGATCGGA 60.079 52.632 0.00 0.00 0.00 4.55
781 784 1.358877 CTTGCGTGTGATCGGAATGA 58.641 50.000 0.00 0.00 39.97 2.57
821 824 3.426191 GGGCGTTAACATTTCCGTTTTTC 59.574 43.478 6.39 0.00 0.00 2.29
822 825 4.292599 GGCGTTAACATTTCCGTTTTTCT 58.707 39.130 6.39 0.00 0.00 2.52
823 826 4.741185 GGCGTTAACATTTCCGTTTTTCTT 59.259 37.500 6.39 0.00 0.00 2.52
824 827 5.232626 GGCGTTAACATTTCCGTTTTTCTTT 59.767 36.000 6.39 0.00 0.00 2.52
825 828 6.417339 GGCGTTAACATTTCCGTTTTTCTTTA 59.583 34.615 6.39 0.00 0.00 1.85
826 829 7.357777 GGCGTTAACATTTCCGTTTTTCTTTAG 60.358 37.037 6.39 0.00 0.00 1.85
827 830 7.357777 GCGTTAACATTTCCGTTTTTCTTTAGG 60.358 37.037 6.39 0.00 0.00 2.69
828 831 7.856894 CGTTAACATTTCCGTTTTTCTTTAGGA 59.143 33.333 6.39 0.00 0.00 2.94
845 848 8.396272 TCTTTAGGAATCAGAAGTTTTTGGAG 57.604 34.615 0.00 0.00 0.00 3.86
906 921 6.967767 CGACGCTAATCTTATAATACTCCCAG 59.032 42.308 0.00 0.00 0.00 4.45
984 999 3.071479 TGATAAACTTGCTTGACCGTCC 58.929 45.455 0.00 0.00 0.00 4.79
1046 1061 3.303406 CAAAAAGGAAGCAGCTTTCGAG 58.697 45.455 9.62 0.00 0.00 4.04
1272 1287 1.002251 CGCTCTCAGACCGTAAGATCC 60.002 57.143 0.00 0.00 43.02 3.36
1282 1297 2.122547 TAAGATCCCGCCTCCCCC 60.123 66.667 0.00 0.00 0.00 5.40
1326 1343 1.644786 CCGGATTTGGTGGCTTCGTC 61.645 60.000 0.00 0.00 0.00 4.20
1427 1444 2.664851 CACAAGAAGCGCACGGGA 60.665 61.111 11.47 0.00 0.00 5.14
1478 1495 1.152881 GGCCAAGCCCATCGATCTT 60.153 57.895 0.00 0.00 44.06 2.40
1594 1611 3.403038 AGGGTTTCTTTCATCTGTGACG 58.597 45.455 0.00 0.00 33.11 4.35
1600 1617 6.438763 GTTTCTTTCATCTGTGACGGATTTT 58.561 36.000 3.71 0.00 33.11 1.82
1625 1642 4.082463 AGTGTTGACGGTGTGTTTTGATTT 60.082 37.500 0.00 0.00 0.00 2.17
1666 1683 2.235898 AGAGGTGAACAAGGAGATGCTC 59.764 50.000 0.00 0.00 0.00 4.26
1758 1775 7.699709 ATATAGCTATAGCCTCTGACTCCTA 57.300 40.000 21.17 3.45 43.38 2.94
1760 1777 7.699709 ATAGCTATAGCCTCTGACTCCTATA 57.300 40.000 21.17 2.74 43.38 1.31
1775 1792 8.533569 TGACTCCTATAACTGTCATGTTATCA 57.466 34.615 9.54 2.61 40.85 2.15
1944 1962 4.708177 ACTTACTCAAAGTGCTGTGTCAT 58.292 39.130 0.00 0.00 46.90 3.06
1960 1978 7.834181 TGCTGTGTCATGCTAGGATATACTATA 59.166 37.037 0.00 0.00 0.00 1.31
1961 1979 8.132362 GCTGTGTCATGCTAGGATATACTATAC 58.868 40.741 0.00 0.00 0.00 1.47
1962 1980 9.402320 CTGTGTCATGCTAGGATATACTATACT 57.598 37.037 0.00 0.00 0.00 2.12
2169 2187 3.067106 ACAGTGGCGTCAAATGACTAAG 58.933 45.455 10.20 0.00 42.66 2.18
2250 2268 7.789831 ACTCTCCAGTCATATTTTATAGGTCCA 59.210 37.037 0.00 0.00 0.00 4.02
2360 2378 1.476488 ACCATTGAAGGCGCCATTAAC 59.524 47.619 31.54 14.72 0.00 2.01
2417 2435 5.474532 TGATGAAATGCCTATGGTATGAAGC 59.525 40.000 0.00 0.00 0.00 3.86
2428 2446 9.034544 GCCTATGGTATGAAGCTTTTTATTTTG 57.965 33.333 0.00 0.00 0.00 2.44
2460 2478 7.298854 GTTGTTTGTTAGAGTAGAGATTTGCC 58.701 38.462 0.00 0.00 0.00 4.52
2467 2485 8.325787 TGTTAGAGTAGAGATTTGCCCATTTTA 58.674 33.333 0.00 0.00 0.00 1.52
2498 2516 0.758310 TGCTTGGTCCCATGTTTGCA 60.758 50.000 0.00 0.00 0.00 4.08
2635 2653 8.565896 TTATTCATATGAATGTATGAGGGTGC 57.434 34.615 32.15 0.00 43.90 5.01
2798 2818 9.988350 AATGCTACTTTGAAGTAAACATTATCG 57.012 29.630 19.73 4.45 41.56 2.92
2862 2882 3.282021 TCCACTTATTGCTGCTTCCATC 58.718 45.455 0.00 0.00 0.00 3.51
3436 3458 1.533625 TGAAAGGTGCCATTTCTCCG 58.466 50.000 11.67 0.00 37.51 4.63
3524 3549 8.438676 CATAGGTTATGGACGAGAAATTTTCT 57.561 34.615 11.40 11.40 36.22 2.52
3861 3888 2.909006 TCTGGCTTCTTCTGGACAGATT 59.091 45.455 2.42 0.00 37.29 2.40
4183 4265 4.245660 TGCAGTACTATCAGCAAGACAAC 58.754 43.478 3.29 0.00 33.48 3.32
4567 4654 7.285172 AGTTTTGCTTAATTTTTCCTTGCCATT 59.715 29.630 0.00 0.00 0.00 3.16
4612 4699 3.008485 GGCTTGAGAAAGAGGAGGAGAAA 59.992 47.826 0.00 0.00 0.00 2.52
4724 4811 9.085250 GCTAGTTTGGTTTCAGTTACTAGTATC 57.915 37.037 2.79 3.00 35.72 2.24
5074 5162 6.493189 AAGTTGCCTTCCCAAAAATCTAAA 57.507 33.333 0.00 0.00 0.00 1.85
5117 5205 8.519799 TTTTCTTGTACTTTTGAACCTCTCAT 57.480 30.769 0.00 0.00 32.78 2.90
5479 5583 4.243270 GGCAGTTGTAACGAACATAGACT 58.757 43.478 0.00 0.00 38.10 3.24
5540 5645 1.882623 CTGCAGGTTTTGAAGGTCTCC 59.117 52.381 5.57 0.00 0.00 3.71
5647 5774 2.962421 GTGCTCCTGCTATCTTCCTAGT 59.038 50.000 0.00 0.00 40.48 2.57
5730 5857 0.742281 CTCATCTGCACCCGGTGAAG 60.742 60.000 22.37 20.50 40.40 3.02
5757 5884 6.610075 AAATTGTGGTGAAAATAGGCTCAT 57.390 33.333 0.00 0.00 0.00 2.90
5814 5942 3.823304 GTCCAGTTTCTCTTTGATGCCTT 59.177 43.478 0.00 0.00 0.00 4.35
5881 6009 7.591795 GCATACTATCGGGACTATGATATTTCG 59.408 40.741 0.00 0.00 0.00 3.46
5882 6010 8.837389 CATACTATCGGGACTATGATATTTCGA 58.163 37.037 0.00 0.00 0.00 3.71
5888 6017 4.631813 GGGACTATGATATTTCGACATGGC 59.368 45.833 0.00 0.00 0.00 4.40
5893 6022 4.356405 TGATATTTCGACATGGCCTCAT 57.644 40.909 3.32 0.00 0.00 2.90
5905 6034 3.057969 TGGCCTCATTGTCTTGTAGTG 57.942 47.619 3.32 0.00 0.00 2.74
6009 6151 7.309920 GCTTTCTCTATGCTAGTCCAGTATAC 58.690 42.308 0.00 0.00 31.32 1.47
6024 6166 8.041323 AGTCCAGTATACTCACAAACCTTAATG 58.959 37.037 1.26 0.00 0.00 1.90
6461 6605 0.178990 GGGACAAGGTTGACAAGGCT 60.179 55.000 0.00 0.00 0.00 4.58
6473 6617 3.334583 GACAAGGCTGTCCTGAATGTA 57.665 47.619 0.00 0.00 45.41 2.29
6552 6696 1.493446 GGAAATCCCCGTTGTATCCCT 59.507 52.381 0.00 0.00 0.00 4.20
6585 6729 3.317149 CCGTAGTCTGAATCGGGAATGTA 59.683 47.826 7.70 0.00 39.41 2.29
6591 6735 2.797156 CTGAATCGGGAATGTAGCGAAG 59.203 50.000 0.00 0.00 0.00 3.79
6599 6743 3.312697 GGGAATGTAGCGAAGAATTGTCC 59.687 47.826 0.00 0.00 0.00 4.02
6652 6797 9.665719 TGCTTATGAGAAATATGTACAAGACAA 57.334 29.630 0.00 0.00 42.78 3.18
6653 6798 9.922305 GCTTATGAGAAATATGTACAAGACAAC 57.078 33.333 0.00 0.00 42.78 3.32
6656 6801 8.846943 ATGAGAAATATGTACAAGACAACACA 57.153 30.769 0.00 0.00 42.78 3.72
6667 6812 7.757624 TGTACAAGACAACACAGGAAAATTTTC 59.242 33.333 20.51 20.51 34.15 2.29
6705 6851 5.297029 GGTCCTATCCAAAGAAATCTTTCCG 59.703 44.000 5.45 0.31 43.72 4.30
6718 6864 3.594603 TCTTTCCGAAGTCTAGGCTTG 57.405 47.619 15.81 6.92 34.41 4.01
6723 6869 1.476891 CCGAAGTCTAGGCTTGCACTA 59.523 52.381 15.81 0.00 0.00 2.74
6727 6874 2.104170 AGTCTAGGCTTGCACTACTCC 58.896 52.381 0.00 0.00 0.00 3.85
6739 6886 6.617953 GCTTGCACTACTCCGTTTAACTTTAG 60.618 42.308 0.00 0.00 0.00 1.85
6740 6887 4.687483 TGCACTACTCCGTTTAACTTTAGC 59.313 41.667 0.00 0.00 0.00 3.09
6742 6889 5.350640 GCACTACTCCGTTTAACTTTAGCAT 59.649 40.000 0.00 0.00 0.00 3.79
6743 6890 6.672357 GCACTACTCCGTTTAACTTTAGCATG 60.672 42.308 0.00 0.00 0.00 4.06
6744 6891 6.367969 CACTACTCCGTTTAACTTTAGCATGT 59.632 38.462 0.00 0.00 0.00 3.21
6745 6892 5.607119 ACTCCGTTTAACTTTAGCATGTG 57.393 39.130 0.00 0.00 0.00 3.21
6746 6893 5.061179 ACTCCGTTTAACTTTAGCATGTGT 58.939 37.500 0.00 0.00 0.00 3.72
6747 6894 5.529800 ACTCCGTTTAACTTTAGCATGTGTT 59.470 36.000 0.00 0.00 0.00 3.32
6748 6895 6.038936 ACTCCGTTTAACTTTAGCATGTGTTT 59.961 34.615 0.00 0.00 0.00 2.83
6749 6896 6.202937 TCCGTTTAACTTTAGCATGTGTTTG 58.797 36.000 0.00 0.00 0.00 2.93
6750 6897 5.401079 CCGTTTAACTTTAGCATGTGTTTGG 59.599 40.000 0.00 0.00 0.00 3.28
6751 6898 5.974751 CGTTTAACTTTAGCATGTGTTTGGT 59.025 36.000 0.00 0.00 0.00 3.67
6752 6899 6.141685 CGTTTAACTTTAGCATGTGTTTGGTC 59.858 38.462 0.00 0.00 0.00 4.02
6753 6900 4.584327 AACTTTAGCATGTGTTTGGTCC 57.416 40.909 0.00 0.00 0.00 4.46
6754 6901 2.552315 ACTTTAGCATGTGTTTGGTCCG 59.448 45.455 0.00 0.00 0.00 4.79
6755 6902 1.529226 TTAGCATGTGTTTGGTCCGG 58.471 50.000 0.00 0.00 0.00 5.14
6756 6903 0.958382 TAGCATGTGTTTGGTCCGGC 60.958 55.000 0.00 0.00 0.00 6.13
6757 6904 2.961768 CATGTGTTTGGTCCGGCC 59.038 61.111 0.00 1.41 37.90 6.13
6758 6905 2.282887 ATGTGTTTGGTCCGGCCC 60.283 61.111 11.72 3.08 36.04 5.80
6759 6906 3.140073 ATGTGTTTGGTCCGGCCCA 62.140 57.895 0.00 0.00 36.04 5.36
6760 6907 2.983592 GTGTTTGGTCCGGCCCAG 60.984 66.667 3.53 0.00 35.49 4.45
6762 6909 4.966787 GTTTGGTCCGGCCCAGCA 62.967 66.667 3.53 0.00 35.49 4.41
6764 6911 3.936772 TTTGGTCCGGCCCAGCATC 62.937 63.158 3.53 0.00 35.49 3.91
6766 6913 3.161450 GGTCCGGCCCAGCATCTA 61.161 66.667 0.00 0.00 0.00 1.98
6767 6914 2.423446 GTCCGGCCCAGCATCTAG 59.577 66.667 0.00 0.00 0.00 2.43
6768 6915 2.844362 TCCGGCCCAGCATCTAGG 60.844 66.667 0.00 0.00 0.00 3.02
6777 6924 2.843701 CCAGCATCTAGGGAACATGTC 58.156 52.381 0.00 0.00 0.00 3.06
6786 6933 1.878775 GGAACATGTCCACTGCTGC 59.121 57.895 0.00 0.00 46.97 5.25
6787 6934 0.890542 GGAACATGTCCACTGCTGCA 60.891 55.000 0.00 0.88 46.97 4.41
6789 6936 0.109153 AACATGTCCACTGCTGCAGA 59.891 50.000 34.28 13.42 35.18 4.26
6790 6937 0.327259 ACATGTCCACTGCTGCAGAT 59.673 50.000 34.28 15.16 35.18 2.90
6791 6938 1.271762 ACATGTCCACTGCTGCAGATT 60.272 47.619 34.28 11.90 35.18 2.40
6792 6939 1.400846 CATGTCCACTGCTGCAGATTC 59.599 52.381 34.28 20.11 35.18 2.52
6795 6942 0.321346 TCCACTGCTGCAGATTCGAA 59.679 50.000 34.28 0.00 35.18 3.71
6797 6944 1.436600 CACTGCTGCAGATTCGAACT 58.563 50.000 34.28 7.99 35.18 3.01
6825 7209 1.202582 GAAGCGCTCTCAACCTGAGTA 59.797 52.381 12.06 0.00 44.58 2.59
6826 7210 0.528470 AGCGCTCTCAACCTGAGTAC 59.472 55.000 2.64 0.00 44.58 2.73
6827 7211 0.458716 GCGCTCTCAACCTGAGTACC 60.459 60.000 0.00 0.00 44.58 3.34
6828 7212 1.178276 CGCTCTCAACCTGAGTACCT 58.822 55.000 3.71 0.00 44.58 3.08
6830 7214 2.171840 GCTCTCAACCTGAGTACCTGA 58.828 52.381 3.71 0.00 44.58 3.86
6831 7215 2.563179 GCTCTCAACCTGAGTACCTGAA 59.437 50.000 3.71 0.00 44.58 3.02
6832 7216 3.196685 GCTCTCAACCTGAGTACCTGAAT 59.803 47.826 3.71 0.00 44.58 2.57
6833 7217 4.323104 GCTCTCAACCTGAGTACCTGAATT 60.323 45.833 3.71 0.00 44.58 2.17
6836 7220 5.544176 TCTCAACCTGAGTACCTGAATTCTT 59.456 40.000 7.05 0.00 44.58 2.52
6837 7221 5.551233 TCAACCTGAGTACCTGAATTCTTG 58.449 41.667 7.05 0.16 0.00 3.02
6838 7222 3.944087 ACCTGAGTACCTGAATTCTTGC 58.056 45.455 7.05 0.00 0.00 4.01
6839 7223 3.327757 ACCTGAGTACCTGAATTCTTGCA 59.672 43.478 7.05 0.00 0.00 4.08
6840 7224 3.937706 CCTGAGTACCTGAATTCTTGCAG 59.062 47.826 7.05 4.91 0.00 4.41
6841 7225 3.338249 TGAGTACCTGAATTCTTGCAGC 58.662 45.455 7.05 0.00 0.00 5.25
6842 7226 2.349886 GAGTACCTGAATTCTTGCAGCG 59.650 50.000 7.05 0.00 0.00 5.18
6843 7227 1.398390 GTACCTGAATTCTTGCAGCGG 59.602 52.381 7.05 0.00 0.00 5.52
6845 7229 1.003118 ACCTGAATTCTTGCAGCGGTA 59.997 47.619 7.05 0.00 0.00 4.02
6846 7230 1.667724 CCTGAATTCTTGCAGCGGTAG 59.332 52.381 7.05 0.00 0.00 3.18
6847 7231 1.667724 CTGAATTCTTGCAGCGGTAGG 59.332 52.381 7.05 0.00 0.00 3.18
6851 7235 0.107831 TTCTTGCAGCGGTAGGTTGT 59.892 50.000 0.00 0.00 0.00 3.32
6852 7236 0.320421 TCTTGCAGCGGTAGGTTGTC 60.320 55.000 0.00 0.00 0.00 3.18
6854 7238 0.882927 TTGCAGCGGTAGGTTGTCAC 60.883 55.000 0.00 0.00 0.00 3.67
6855 7239 2.033194 GCAGCGGTAGGTTGTCACC 61.033 63.158 0.00 0.00 44.67 4.02
6869 7254 3.717294 CACCCCCTCCTCCGTTGG 61.717 72.222 0.00 0.00 0.00 3.77
6874 7259 4.101448 CCTCCTCCGTTGGCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
6875 7260 4.785453 CTCCTCCGTTGGCCCAGC 62.785 72.222 0.00 0.00 0.00 4.85
6888 7273 4.704833 CCAGCTGGGGACGGTGTG 62.705 72.222 26.14 0.00 39.64 3.82
6889 7274 4.704833 CAGCTGGGGACGGTGTGG 62.705 72.222 5.57 0.00 39.64 4.17
6892 7277 3.246112 CTGGGGACGGTGTGGGAA 61.246 66.667 0.00 0.00 0.00 3.97
6893 7278 3.546714 CTGGGGACGGTGTGGGAAC 62.547 68.421 0.00 0.00 0.00 3.62
6894 7279 3.562232 GGGGACGGTGTGGGAACA 61.562 66.667 0.00 0.00 38.70 3.18
6895 7280 2.754375 GGGACGGTGTGGGAACAT 59.246 61.111 0.00 0.00 46.14 2.71
6897 7282 0.325602 GGGACGGTGTGGGAACATTA 59.674 55.000 0.00 0.00 46.14 1.90
6898 7283 1.271488 GGGACGGTGTGGGAACATTAA 60.271 52.381 0.00 0.00 46.14 1.40
6899 7284 2.619590 GGGACGGTGTGGGAACATTAAT 60.620 50.000 0.00 0.00 46.14 1.40
6900 7285 3.086282 GGACGGTGTGGGAACATTAATT 58.914 45.455 0.00 0.00 46.14 1.40
6901 7286 4.263435 GGACGGTGTGGGAACATTAATTA 58.737 43.478 0.00 0.00 46.14 1.40
6905 7290 7.067251 GGACGGTGTGGGAACATTAATTATTAA 59.933 37.037 0.00 0.00 46.14 1.40
6906 7291 8.350852 ACGGTGTGGGAACATTAATTATTAAA 57.649 30.769 1.28 0.00 46.14 1.52
6907 7292 8.804204 ACGGTGTGGGAACATTAATTATTAAAA 58.196 29.630 1.28 0.00 46.14 1.52
6908 7293 9.640963 CGGTGTGGGAACATTAATTATTAAAAA 57.359 29.630 1.28 0.00 46.14 1.94
6942 7400 6.861572 AGTAAAATAAAAGTCGCAAAGCTTCC 59.138 34.615 0.00 0.00 0.00 3.46
6945 7403 1.021968 AAAGTCGCAAAGCTTCCGTT 58.978 45.000 16.05 4.97 0.00 4.44
6956 7414 2.230660 AGCTTCCGTTTTCTTCCAAGG 58.769 47.619 0.00 0.00 0.00 3.61
6983 7468 2.416678 CGGCTTTGCAAACAGGCA 59.583 55.556 20.70 0.00 43.19 4.75
6989 7474 1.342174 CTTTGCAAACAGGCAGGTCAT 59.658 47.619 8.05 0.00 45.88 3.06
7069 7586 0.659427 CCGGAAGTGTAGCATGCATG 59.341 55.000 22.70 22.70 29.67 4.06
7070 7587 1.655484 CGGAAGTGTAGCATGCATGA 58.345 50.000 30.64 7.50 29.67 3.07
7071 7588 2.009051 CGGAAGTGTAGCATGCATGAA 58.991 47.619 30.64 14.25 29.67 2.57
7072 7589 2.419673 CGGAAGTGTAGCATGCATGAAA 59.580 45.455 30.64 13.87 29.67 2.69
7073 7590 3.486375 CGGAAGTGTAGCATGCATGAAAG 60.486 47.826 30.64 3.89 29.67 2.62
7074 7591 3.432782 GAAGTGTAGCATGCATGAAAGC 58.567 45.455 30.64 14.74 29.67 3.51
7075 7592 2.719739 AGTGTAGCATGCATGAAAGCT 58.280 42.857 30.64 21.14 40.92 3.74
7114 7654 4.376225 AAAATTAACGACCCCTCAGGAA 57.624 40.909 0.00 0.00 39.89 3.36
7144 7684 5.278964 AGACTCGAAAATTAACGAAAGCC 57.721 39.130 7.95 0.37 38.05 4.35
7146 7686 5.411669 AGACTCGAAAATTAACGAAAGCCAT 59.588 36.000 7.95 0.00 38.05 4.40
7148 7688 5.411669 ACTCGAAAATTAACGAAAGCCATCT 59.588 36.000 7.95 0.00 38.05 2.90
7149 7689 6.592607 ACTCGAAAATTAACGAAAGCCATCTA 59.407 34.615 7.95 0.00 38.05 1.98
7150 7690 7.280205 ACTCGAAAATTAACGAAAGCCATCTAT 59.720 33.333 7.95 0.00 38.05 1.98
7151 7691 8.651391 TCGAAAATTAACGAAAGCCATCTATA 57.349 30.769 4.77 0.00 35.62 1.31
7152 7692 8.545420 TCGAAAATTAACGAAAGCCATCTATAC 58.455 33.333 4.77 0.00 35.62 1.47
7186 7729 0.594284 GCGTCTACATGCTACCGGAC 60.594 60.000 9.46 0.00 0.00 4.79
7188 7731 1.019673 GTCTACATGCTACCGGACGA 58.980 55.000 9.46 0.00 0.00 4.20
7193 7736 0.999406 CATGCTACCGGACGACTTTG 59.001 55.000 9.46 0.00 0.00 2.77
7194 7737 0.892755 ATGCTACCGGACGACTTTGA 59.107 50.000 9.46 0.00 0.00 2.69
7195 7738 0.892755 TGCTACCGGACGACTTTGAT 59.107 50.000 9.46 0.00 0.00 2.57
7196 7739 1.278238 GCTACCGGACGACTTTGATG 58.722 55.000 9.46 0.00 0.00 3.07
7198 7741 2.527100 CTACCGGACGACTTTGATGAC 58.473 52.381 9.46 0.00 0.00 3.06
7232 7776 0.681733 AACTGCATCTGTGGACGACT 59.318 50.000 0.00 0.00 0.00 4.18
7252 7796 3.053619 ACTGGCCTAGGGAAATAAAGTGG 60.054 47.826 11.72 0.00 0.00 4.00
7319 7863 2.988684 GGCATGCACCACCGGAAA 60.989 61.111 21.36 0.00 0.00 3.13
7321 7865 2.961768 CATGCACCACCGGAAACC 59.038 61.111 9.46 0.00 0.00 3.27
7322 7866 1.900981 CATGCACCACCGGAAACCA 60.901 57.895 9.46 0.00 0.00 3.67
7332 7876 3.628982 GGAAACCACCGGACCCGA 61.629 66.667 9.46 0.00 42.83 5.14
7333 7877 2.047560 GAAACCACCGGACCCGAG 60.048 66.667 9.46 2.86 42.83 4.63
7334 7878 4.324991 AAACCACCGGACCCGAGC 62.325 66.667 9.46 0.00 42.83 5.03
7337 7881 4.760047 CCACCGGACCCGAGCAAG 62.760 72.222 9.46 0.00 42.83 4.01
7340 7884 2.345991 CCGGACCCGAGCAAGAAA 59.654 61.111 10.42 0.00 42.83 2.52
7342 7886 1.298859 CCGGACCCGAGCAAGAAAAG 61.299 60.000 10.42 0.00 42.83 2.27
7343 7887 1.876664 GGACCCGAGCAAGAAAAGC 59.123 57.895 0.00 0.00 0.00 3.51
7345 7889 1.227853 ACCCGAGCAAGAAAAGCGT 60.228 52.632 0.00 0.00 37.01 5.07
7346 7890 1.228657 ACCCGAGCAAGAAAAGCGTC 61.229 55.000 0.00 0.00 37.01 5.19
7381 7925 1.859703 CGCAGCTGCAAAATCAAAACA 59.140 42.857 36.03 0.00 42.21 2.83
7383 7927 3.602946 CGCAGCTGCAAAATCAAAACAAG 60.603 43.478 36.03 12.42 42.21 3.16
7384 7928 3.847105 GCAGCTGCAAAATCAAAACAAGC 60.847 43.478 33.36 0.00 41.59 4.01
7386 7930 3.558418 AGCTGCAAAATCAAAACAAGCTG 59.442 39.130 1.02 0.00 0.00 4.24
7388 7932 4.551410 GCTGCAAAATCAAAACAAGCTGTC 60.551 41.667 0.00 0.00 0.00 3.51
7401 7946 4.122046 ACAAGCTGTCCATTTTGCTTTTC 58.878 39.130 0.00 0.00 42.89 2.29
7414 7959 6.959639 TTTTGCTTTTCAGTCTGTAGGAAT 57.040 33.333 0.00 0.00 0.00 3.01
7421 7966 5.957771 TTCAGTCTGTAGGAATAATGCCT 57.042 39.130 0.00 0.00 39.56 4.75
7422 7967 7.432148 TTTCAGTCTGTAGGAATAATGCCTA 57.568 36.000 0.00 0.00 36.96 3.93
7442 7987 2.747396 GAGCATCTCTCCAGGCATAG 57.253 55.000 0.00 0.00 35.77 2.23
7443 7988 0.686224 AGCATCTCTCCAGGCATAGC 59.314 55.000 0.00 0.00 0.00 2.97
7444 7989 0.395686 GCATCTCTCCAGGCATAGCA 59.604 55.000 0.00 0.00 0.00 3.49
7445 7990 1.608542 GCATCTCTCCAGGCATAGCAG 60.609 57.143 0.00 0.00 0.00 4.24
7446 7991 1.969208 CATCTCTCCAGGCATAGCAGA 59.031 52.381 0.00 0.00 0.00 4.26
7447 7992 1.702182 TCTCTCCAGGCATAGCAGAG 58.298 55.000 0.00 0.00 33.23 3.35
7448 7993 1.216427 TCTCTCCAGGCATAGCAGAGA 59.784 52.381 0.05 0.05 37.80 3.10
7449 7994 2.037901 CTCTCCAGGCATAGCAGAGAA 58.962 52.381 6.94 0.00 33.03 2.87
7450 7995 2.036217 CTCTCCAGGCATAGCAGAGAAG 59.964 54.545 6.94 0.73 33.03 2.85
7451 7996 2.037901 CTCCAGGCATAGCAGAGAAGA 58.962 52.381 0.00 0.00 0.00 2.87
7452 7997 2.036217 CTCCAGGCATAGCAGAGAAGAG 59.964 54.545 0.00 0.00 0.00 2.85
7453 7998 2.037901 CCAGGCATAGCAGAGAAGAGA 58.962 52.381 0.00 0.00 0.00 3.10
7454 7999 2.633967 CCAGGCATAGCAGAGAAGAGAT 59.366 50.000 0.00 0.00 0.00 2.75
7455 8000 3.555377 CCAGGCATAGCAGAGAAGAGATG 60.555 52.174 0.00 0.00 0.00 2.90
7456 8001 3.321396 CAGGCATAGCAGAGAAGAGATGA 59.679 47.826 0.00 0.00 0.00 2.92
7457 8002 3.575256 AGGCATAGCAGAGAAGAGATGAG 59.425 47.826 0.00 0.00 0.00 2.90
7458 8003 3.573538 GGCATAGCAGAGAAGAGATGAGA 59.426 47.826 0.00 0.00 0.00 3.27
7459 8004 4.321452 GGCATAGCAGAGAAGAGATGAGAG 60.321 50.000 0.00 0.00 0.00 3.20
7460 8005 4.520111 GCATAGCAGAGAAGAGATGAGAGA 59.480 45.833 0.00 0.00 0.00 3.10
7461 8006 5.563475 GCATAGCAGAGAAGAGATGAGAGAC 60.563 48.000 0.00 0.00 0.00 3.36
7462 8007 4.240881 AGCAGAGAAGAGATGAGAGACT 57.759 45.455 0.00 0.00 0.00 3.24
7463 8008 4.603131 AGCAGAGAAGAGATGAGAGACTT 58.397 43.478 0.00 0.00 0.00 3.01
7464 8009 4.400251 AGCAGAGAAGAGATGAGAGACTTG 59.600 45.833 0.00 0.00 0.00 3.16
7465 8010 4.440525 GCAGAGAAGAGATGAGAGACTTGG 60.441 50.000 0.00 0.00 0.00 3.61
7466 8011 3.701040 AGAGAAGAGATGAGAGACTTGGC 59.299 47.826 0.00 0.00 0.00 4.52
7478 8023 3.073650 AGAGACTTGGCTGGTCTGAATTT 59.926 43.478 15.26 0.00 43.13 1.82
7479 8024 3.823304 GAGACTTGGCTGGTCTGAATTTT 59.177 43.478 15.26 0.00 43.13 1.82
7480 8025 3.823304 AGACTTGGCTGGTCTGAATTTTC 59.177 43.478 10.98 0.00 41.76 2.29
7481 8026 3.823304 GACTTGGCTGGTCTGAATTTTCT 59.177 43.478 3.83 0.00 0.00 2.52
7482 8027 4.218312 ACTTGGCTGGTCTGAATTTTCTT 58.782 39.130 0.00 0.00 0.00 2.52
7483 8028 4.651045 ACTTGGCTGGTCTGAATTTTCTTT 59.349 37.500 0.00 0.00 0.00 2.52
7484 8029 4.589216 TGGCTGGTCTGAATTTTCTTTG 57.411 40.909 0.00 0.00 0.00 2.77
7485 8030 3.960102 TGGCTGGTCTGAATTTTCTTTGT 59.040 39.130 0.00 0.00 0.00 2.83
7486 8031 4.405358 TGGCTGGTCTGAATTTTCTTTGTT 59.595 37.500 0.00 0.00 0.00 2.83
7487 8032 4.746611 GGCTGGTCTGAATTTTCTTTGTTG 59.253 41.667 0.00 0.00 0.00 3.33
7488 8033 5.351458 GCTGGTCTGAATTTTCTTTGTTGT 58.649 37.500 0.00 0.00 0.00 3.32
7489 8034 5.460091 GCTGGTCTGAATTTTCTTTGTTGTC 59.540 40.000 0.00 0.00 0.00 3.18
7502 8047 5.496556 TCTTTGTTGTCTTCTTTCTGTCCA 58.503 37.500 0.00 0.00 0.00 4.02
7515 8060 1.202964 TCTGTCCAGTCCCGTCAAGTA 60.203 52.381 0.00 0.00 0.00 2.24
7516 8061 1.825474 CTGTCCAGTCCCGTCAAGTAT 59.175 52.381 0.00 0.00 0.00 2.12
7520 8065 2.024655 TCCAGTCCCGTCAAGTATAGGT 60.025 50.000 0.00 0.00 0.00 3.08
7526 8071 4.826183 GTCCCGTCAAGTATAGGTGTCTAT 59.174 45.833 0.00 0.00 39.38 1.98
7527 8072 5.048852 GTCCCGTCAAGTATAGGTGTCTATC 60.049 48.000 0.00 0.00 37.39 2.08
7528 8073 5.071370 CCCGTCAAGTATAGGTGTCTATCT 58.929 45.833 0.00 0.00 37.39 1.98
7529 8074 6.043590 TCCCGTCAAGTATAGGTGTCTATCTA 59.956 42.308 0.00 0.00 37.39 1.98
7530 8075 6.372103 CCCGTCAAGTATAGGTGTCTATCTAG 59.628 46.154 0.00 0.00 37.39 2.43
7564 8109 4.944619 AATTGACAGACAGACAGACAGA 57.055 40.909 0.00 0.00 0.00 3.41
7565 8110 4.944619 ATTGACAGACAGACAGACAGAA 57.055 40.909 0.00 0.00 0.00 3.02
7566 8111 4.736126 TTGACAGACAGACAGACAGAAA 57.264 40.909 0.00 0.00 0.00 2.52
7567 8112 4.313277 TGACAGACAGACAGACAGAAAG 57.687 45.455 0.00 0.00 0.00 2.62
7583 8128 6.436532 AGACAGAAAGCATGGAATTCAGATTT 59.563 34.615 7.93 7.65 0.00 2.17
7584 8129 6.395629 ACAGAAAGCATGGAATTCAGATTTG 58.604 36.000 7.93 1.33 0.00 2.32
7585 8130 6.014840 ACAGAAAGCATGGAATTCAGATTTGT 60.015 34.615 7.93 3.90 0.00 2.83
7586 8131 6.310467 CAGAAAGCATGGAATTCAGATTTGTG 59.690 38.462 7.93 11.73 0.00 3.33
7595 8140 5.420104 GGAATTCAGATTTGTGGGATTCAGT 59.580 40.000 7.93 0.00 0.00 3.41
7596 8141 6.603201 GGAATTCAGATTTGTGGGATTCAGTA 59.397 38.462 7.93 0.00 0.00 2.74
7597 8142 7.286316 GGAATTCAGATTTGTGGGATTCAGTAT 59.714 37.037 7.93 0.00 0.00 2.12
7623 8168 4.106825 TGGGATTGATGGGCATCTAATTCT 59.893 41.667 0.00 0.00 38.60 2.40
7627 8172 7.344913 GGATTGATGGGCATCTAATTCTAGAT 58.655 38.462 0.00 0.00 44.32 1.98
7666 8211 4.174129 GCACGCGCGGGCTAAATT 62.174 61.111 46.53 15.41 42.14 1.82
7667 8212 2.483288 CACGCGCGGGCTAAATTT 59.517 55.556 35.22 6.31 36.88 1.82
7668 8213 1.582680 CACGCGCGGGCTAAATTTC 60.583 57.895 35.22 0.00 36.88 2.17
7669 8214 2.350760 CGCGCGGGCTAAATTTCG 60.351 61.111 24.84 0.00 36.88 3.46
7670 8215 2.789249 GCGCGGGCTAAATTTCGT 59.211 55.556 18.33 0.00 35.83 3.85
7671 8216 1.582680 GCGCGGGCTAAATTTCGTG 60.583 57.895 18.33 0.00 35.83 4.35
7672 8217 1.791662 CGCGGGCTAAATTTCGTGT 59.208 52.632 0.00 0.00 0.00 4.49
7673 8218 0.167251 CGCGGGCTAAATTTCGTGTT 59.833 50.000 0.00 0.00 0.00 3.32
7674 8219 1.400500 CGCGGGCTAAATTTCGTGTTT 60.400 47.619 0.00 0.00 0.00 2.83
7675 8220 2.668250 GCGGGCTAAATTTCGTGTTTT 58.332 42.857 0.00 0.00 0.00 2.43
7676 8221 2.407026 GCGGGCTAAATTTCGTGTTTTG 59.593 45.455 0.00 0.00 0.00 2.44
7677 8222 3.854045 GCGGGCTAAATTTCGTGTTTTGA 60.854 43.478 0.00 0.00 0.00 2.69
7678 8223 3.666797 CGGGCTAAATTTCGTGTTTTGAC 59.333 43.478 0.00 0.00 0.00 3.18
7679 8224 3.985279 GGGCTAAATTTCGTGTTTTGACC 59.015 43.478 0.00 0.00 33.51 4.02
7680 8225 3.985279 GGCTAAATTTCGTGTTTTGACCC 59.015 43.478 0.00 0.00 0.00 4.46
7681 8226 4.261867 GGCTAAATTTCGTGTTTTGACCCT 60.262 41.667 0.00 0.00 0.00 4.34
7682 8227 5.286438 GCTAAATTTCGTGTTTTGACCCTT 58.714 37.500 0.00 0.00 0.00 3.95
7683 8228 5.751509 GCTAAATTTCGTGTTTTGACCCTTT 59.248 36.000 0.00 0.00 0.00 3.11
7684 8229 6.256975 GCTAAATTTCGTGTTTTGACCCTTTT 59.743 34.615 0.00 0.00 0.00 2.27
7685 8230 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
7686 8231 3.408288 TTCGTGTTTTGACCCTTTTCG 57.592 42.857 0.00 0.00 0.00 3.46
7687 8232 1.064357 TCGTGTTTTGACCCTTTTCGC 59.936 47.619 0.00 0.00 0.00 4.70
7688 8233 1.202200 CGTGTTTTGACCCTTTTCGCA 60.202 47.619 0.00 0.00 0.00 5.10
7689 8234 2.542824 CGTGTTTTGACCCTTTTCGCAT 60.543 45.455 0.00 0.00 0.00 4.73
7690 8235 3.304123 CGTGTTTTGACCCTTTTCGCATA 60.304 43.478 0.00 0.00 0.00 3.14
7691 8236 4.226761 GTGTTTTGACCCTTTTCGCATAG 58.773 43.478 0.00 0.00 0.00 2.23
7692 8237 4.023536 GTGTTTTGACCCTTTTCGCATAGA 60.024 41.667 0.00 0.00 0.00 1.98
7693 8238 4.580995 TGTTTTGACCCTTTTCGCATAGAA 59.419 37.500 0.00 0.00 37.01 2.10
7694 8239 5.067936 TGTTTTGACCCTTTTCGCATAGAAA 59.932 36.000 0.00 0.00 46.22 2.52
7695 8240 5.975693 TTTGACCCTTTTCGCATAGAAAT 57.024 34.783 0.00 0.00 46.98 2.17
7696 8241 5.975693 TTGACCCTTTTCGCATAGAAATT 57.024 34.783 0.00 0.00 46.98 1.82
7697 8242 5.560966 TGACCCTTTTCGCATAGAAATTC 57.439 39.130 0.00 0.00 46.98 2.17
7698 8243 5.007034 TGACCCTTTTCGCATAGAAATTCA 58.993 37.500 0.00 0.00 46.98 2.57
7699 8244 5.475220 TGACCCTTTTCGCATAGAAATTCAA 59.525 36.000 0.00 0.00 46.98 2.69
7700 8245 6.015856 TGACCCTTTTCGCATAGAAATTCAAA 60.016 34.615 0.00 0.00 46.98 2.69
7701 8246 6.754193 ACCCTTTTCGCATAGAAATTCAAAA 58.246 32.000 0.00 0.00 46.98 2.44
7702 8247 7.386059 ACCCTTTTCGCATAGAAATTCAAAAT 58.614 30.769 0.00 0.00 46.98 1.82
7703 8248 7.545615 ACCCTTTTCGCATAGAAATTCAAAATC 59.454 33.333 0.00 0.00 46.98 2.17
7704 8249 7.761249 CCCTTTTCGCATAGAAATTCAAAATCT 59.239 33.333 0.00 0.00 46.98 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.109365 TTTGATGCGCATTGGTTCGG 60.109 50.000 26.12 0.00 0.00 4.30
122 123 2.434884 CTGTTCGGAGGCACGCAT 60.435 61.111 0.00 0.00 0.00 4.73
297 298 1.995542 TCCTGCATTTTCCCTCTTCCT 59.004 47.619 0.00 0.00 0.00 3.36
510 513 3.370527 CCCTCACGGTTCCATTTACTCAT 60.371 47.826 0.00 0.00 0.00 2.90
690 693 3.807538 GCGCCACGTAGGACGAGA 61.808 66.667 17.57 0.00 46.05 4.04
728 731 3.791789 GCAACTTTGTGCACGAATCTTGA 60.792 43.478 26.90 7.41 44.29 3.02
772 775 0.180171 TGGGCGTTCATCATTCCGAT 59.820 50.000 0.00 0.00 33.27 4.18
777 780 0.605319 ACGTGTGGGCGTTCATCATT 60.605 50.000 0.00 0.00 43.04 2.57
781 784 2.110213 ACACGTGTGGGCGTTCAT 59.890 55.556 22.71 0.00 43.83 2.57
821 824 8.396272 TCTCCAAAAACTTCTGATTCCTAAAG 57.604 34.615 0.00 0.00 0.00 1.85
822 825 8.760980 TTCTCCAAAAACTTCTGATTCCTAAA 57.239 30.769 0.00 0.00 0.00 1.85
823 826 8.760980 TTTCTCCAAAAACTTCTGATTCCTAA 57.239 30.769 0.00 0.00 0.00 2.69
824 827 8.760980 TTTTCTCCAAAAACTTCTGATTCCTA 57.239 30.769 0.00 0.00 0.00 2.94
825 828 7.660030 TTTTCTCCAAAAACTTCTGATTCCT 57.340 32.000 0.00 0.00 0.00 3.36
885 900 7.841956 TCAGCTGGGAGTATTATAAGATTAGC 58.158 38.462 15.13 0.00 0.00 3.09
891 906 7.768120 GGATTCATCAGCTGGGAGTATTATAAG 59.232 40.741 15.13 0.00 0.00 1.73
892 907 7.579531 CGGATTCATCAGCTGGGAGTATTATAA 60.580 40.741 15.13 0.00 0.00 0.98
893 908 6.127338 CGGATTCATCAGCTGGGAGTATTATA 60.127 42.308 15.13 0.00 0.00 0.98
984 999 2.171840 TCGGTGAAGAGAAGAAGAGGG 58.828 52.381 0.00 0.00 0.00 4.30
1046 1061 1.445410 GCGAATTTGGGGGCGAAAC 60.445 57.895 0.00 0.00 0.00 2.78
1087 1102 3.830192 CCCCGCCATTGCTGCTTC 61.830 66.667 0.00 0.00 34.43 3.86
1257 1272 1.389609 GGCGGGATCTTACGGTCTGA 61.390 60.000 0.00 0.00 0.00 3.27
1320 1336 2.508891 GCACGCAGGATCGACGAAG 61.509 63.158 0.00 0.00 0.00 3.79
1326 1343 1.858091 AAATCTAGCACGCAGGATCG 58.142 50.000 0.00 0.00 0.00 3.69
1502 1519 1.524621 GTCCACATCCATGGCCTCG 60.525 63.158 6.96 0.00 39.85 4.63
1594 1611 2.616842 ACACCGTCAACACTCAAAATCC 59.383 45.455 0.00 0.00 0.00 3.01
1600 1617 2.102070 AAACACACCGTCAACACTCA 57.898 45.000 0.00 0.00 0.00 3.41
1625 1642 1.891919 GCGACACCAACTCTGCCAA 60.892 57.895 0.00 0.00 0.00 4.52
1666 1683 0.597637 CCATCGATTCGAGTTCCCCG 60.598 60.000 14.81 0.00 39.91 5.73
1960 1978 3.737559 TGCCATTCAGAACCCAATAGT 57.262 42.857 0.00 0.00 0.00 2.12
1961 1979 6.064060 TCTTATGCCATTCAGAACCCAATAG 58.936 40.000 0.00 0.00 0.00 1.73
1962 1980 6.012337 TCTTATGCCATTCAGAACCCAATA 57.988 37.500 0.00 0.00 0.00 1.90
1963 1981 4.870636 TCTTATGCCATTCAGAACCCAAT 58.129 39.130 0.00 0.00 0.00 3.16
1964 1982 4.314522 TCTTATGCCATTCAGAACCCAA 57.685 40.909 0.00 0.00 0.00 4.12
2132 2150 5.159209 GCCACTGTCATCTTCAAGAAATTG 58.841 41.667 0.00 0.00 0.00 2.32
2141 2159 3.514777 TGACGCCACTGTCATCTTC 57.485 52.632 0.00 0.00 43.62 2.87
2169 2187 2.489938 TGCTGGTCCATTCAGGTAAC 57.510 50.000 0.00 0.00 39.02 2.50
2250 2268 7.813148 GCAGCTGCATGAGATAATATCAAAAAT 59.187 33.333 33.36 0.00 41.59 1.82
2428 2446 7.646922 TCTCTACTCTAACAAACAACGAAGAAC 59.353 37.037 0.00 0.00 0.00 3.01
2435 2453 7.298854 GGCAAATCTCTACTCTAACAAACAAC 58.701 38.462 0.00 0.00 0.00 3.32
2460 2478 6.314400 CCAAGCACCATCAGAAATTAAAATGG 59.686 38.462 0.00 0.00 42.12 3.16
2467 2485 2.827921 GGACCAAGCACCATCAGAAATT 59.172 45.455 0.00 0.00 0.00 1.82
2635 2653 5.243730 ACCATGTCATTTGGGAAAAGTACAG 59.756 40.000 0.00 0.00 38.64 2.74
2739 2759 7.759489 AAGTGAACACATCCAATTAAAGCTA 57.241 32.000 7.68 0.00 0.00 3.32
3218 3240 6.258947 TGTCAACGAATTGATTCAGTACAACA 59.741 34.615 0.00 5.95 46.43 3.33
3404 3426 3.796717 GCACCTTTCAAAAGTAGTGTTGC 59.203 43.478 11.16 0.00 33.49 4.17
3412 3434 4.202253 GGAGAAATGGCACCTTTCAAAAGT 60.202 41.667 14.18 0.00 35.51 2.66
3436 3458 6.846350 AGCTCTAAGATTTGTGCACAATTAC 58.154 36.000 31.48 23.21 35.55 1.89
3522 3547 5.991933 AGACAAGTGCTCTTTATCTCAGA 57.008 39.130 0.00 0.00 0.00 3.27
3523 3548 6.162079 TCAAGACAAGTGCTCTTTATCTCAG 58.838 40.000 10.85 8.18 30.63 3.35
3524 3549 6.101650 TCAAGACAAGTGCTCTTTATCTCA 57.898 37.500 10.85 1.91 30.63 3.27
3628 3655 4.210537 TCTTCTTTCTTTTTACGAGCACGG 59.789 41.667 8.74 0.00 44.46 4.94
3787 3814 7.165460 TGTCGTCCTCTGTTTATTCTGATTA 57.835 36.000 0.00 0.00 0.00 1.75
3788 3815 6.037786 TGTCGTCCTCTGTTTATTCTGATT 57.962 37.500 0.00 0.00 0.00 2.57
4040 4070 7.036996 TGAACAAGAAAATACACATCAGCAA 57.963 32.000 0.00 0.00 0.00 3.91
4567 4654 4.426736 TCTCAATTCTATGATGCTGCCA 57.573 40.909 0.00 0.00 0.00 4.92
4612 4699 3.006247 GCGAATCTTTTCTCTGGCTCTT 58.994 45.455 0.00 0.00 0.00 2.85
4823 4910 6.566197 ATGAGAAACTGTTTGAGGCTTAAG 57.434 37.500 11.03 0.00 0.00 1.85
5074 5162 7.600065 CAAGAAAATCTTGTCCATCTCACATT 58.400 34.615 11.10 0.00 46.50 2.71
5117 5205 6.498651 AGGAGTCCTCTATTTGTTCTGAGAAA 59.501 38.462 5.62 0.00 0.00 2.52
5190 5278 1.433879 CAGACGGTTCTAGAGGGCG 59.566 63.158 0.00 0.00 0.00 6.13
5380 5468 4.644685 CCGTGACTTCCATGGGAAAATTAT 59.355 41.667 13.02 0.00 46.09 1.28
5479 5583 5.812286 GGTCCCTCAACCTCATAAACTAAA 58.188 41.667 0.00 0.00 36.32 1.85
5730 5857 6.691508 AGCCTATTTTCACCACAATTTTCTC 58.308 36.000 0.00 0.00 0.00 2.87
5757 5884 2.325661 TCAGGAGATCCCAACTGTGA 57.674 50.000 0.00 0.00 37.41 3.58
5881 6009 2.440409 ACAAGACAATGAGGCCATGTC 58.560 47.619 18.02 18.02 34.24 3.06
5882 6010 2.592102 ACAAGACAATGAGGCCATGT 57.408 45.000 5.01 4.09 32.36 3.21
5888 6017 5.352569 GTCATTCCACTACAAGACAATGAGG 59.647 44.000 0.00 0.00 32.35 3.86
5893 6022 5.680619 ACAAGTCATTCCACTACAAGACAA 58.319 37.500 0.00 0.00 0.00 3.18
5905 6034 2.076863 CCGAACTGGACAAGTCATTCC 58.923 52.381 2.29 0.00 42.00 3.01
5969 6098 3.599343 AGAAAGCGCACATCACTGATTA 58.401 40.909 11.47 0.00 0.00 1.75
6102 6244 7.207383 CCGTGTAGGTAAGTATGATGAAATCA 58.793 38.462 0.00 0.00 46.86 2.57
6108 6250 4.583489 AGTCCCGTGTAGGTAAGTATGATG 59.417 45.833 0.00 0.00 38.74 3.07
6213 6355 2.497675 TCTGAATTTCTCCTCGTCAGGG 59.502 50.000 0.00 0.00 40.80 4.45
6461 6605 1.208052 GCTCCAGCTACATTCAGGACA 59.792 52.381 0.00 0.00 38.21 4.02
6552 6696 3.437213 TCAGACTACGGATTTCCAGGAA 58.563 45.455 0.00 0.00 35.14 3.36
6585 6729 6.016276 ACAGTTTAATTGGACAATTCTTCGCT 60.016 34.615 13.07 4.62 40.99 4.93
6642 6787 7.757624 TGAAAATTTTCCTGTGTTGTCTTGTAC 59.242 33.333 24.51 0.00 36.36 2.90
6643 6788 7.757624 GTGAAAATTTTCCTGTGTTGTCTTGTA 59.242 33.333 24.51 1.17 36.36 2.41
6644 6789 6.589907 GTGAAAATTTTCCTGTGTTGTCTTGT 59.410 34.615 24.51 0.00 36.36 3.16
6645 6790 6.589523 TGTGAAAATTTTCCTGTGTTGTCTTG 59.410 34.615 24.51 0.00 36.36 3.02
6646 6791 6.589907 GTGTGAAAATTTTCCTGTGTTGTCTT 59.410 34.615 24.51 0.00 36.36 3.01
6648 6793 5.866633 TGTGTGAAAATTTTCCTGTGTTGTC 59.133 36.000 24.51 0.90 36.36 3.18
6652 6797 4.141959 CCCTGTGTGAAAATTTTCCTGTGT 60.142 41.667 24.51 0.00 36.36 3.72
6653 6798 4.370917 CCCTGTGTGAAAATTTTCCTGTG 58.629 43.478 24.51 12.59 36.36 3.66
6654 6799 3.387699 CCCCTGTGTGAAAATTTTCCTGT 59.612 43.478 24.51 0.00 36.36 4.00
6655 6800 3.640967 TCCCCTGTGTGAAAATTTTCCTG 59.359 43.478 24.51 14.23 36.36 3.86
6656 6801 3.922375 TCCCCTGTGTGAAAATTTTCCT 58.078 40.909 24.51 0.00 36.36 3.36
6667 6812 1.073199 GGACCAGTTCCCCTGTGTG 59.927 63.158 0.00 0.00 39.74 3.82
6705 6851 3.429684 GGAGTAGTGCAAGCCTAGACTTC 60.430 52.174 0.00 0.00 0.00 3.01
6718 6864 4.687483 TGCTAAAGTTAAACGGAGTAGTGC 59.313 41.667 0.00 0.00 45.00 4.40
6727 6874 5.974751 ACCAAACACATGCTAAAGTTAAACG 59.025 36.000 0.00 0.00 0.00 3.60
6739 6886 2.258286 GCCGGACCAAACACATGC 59.742 61.111 5.05 0.00 0.00 4.06
6740 6887 2.635443 GGGCCGGACCAAACACATG 61.635 63.158 25.88 0.00 42.05 3.21
6742 6889 3.783362 CTGGGCCGGACCAAACACA 62.783 63.158 33.44 5.92 40.68 3.72
6743 6890 2.983592 CTGGGCCGGACCAAACAC 60.984 66.667 33.44 0.00 40.68 3.32
6744 6891 4.966787 GCTGGGCCGGACCAAACA 62.967 66.667 33.44 7.35 40.68 2.83
6745 6892 4.966787 TGCTGGGCCGGACCAAAC 62.967 66.667 33.44 25.98 40.68 2.93
6746 6893 3.936772 GATGCTGGGCCGGACCAAA 62.937 63.158 33.44 22.90 40.68 3.28
6747 6894 4.424711 GATGCTGGGCCGGACCAA 62.425 66.667 33.44 18.69 40.68 3.67
6748 6895 3.993865 TAGATGCTGGGCCGGACCA 62.994 63.158 31.87 31.87 42.05 4.02
6749 6896 3.161450 TAGATGCTGGGCCGGACC 61.161 66.667 23.70 23.70 37.93 4.46
6750 6897 2.423446 CTAGATGCTGGGCCGGAC 59.577 66.667 18.84 0.00 0.00 4.79
6751 6898 2.844362 CCTAGATGCTGGGCCGGA 60.844 66.667 18.84 3.98 0.00 5.14
6752 6899 3.946201 CCCTAGATGCTGGGCCGG 61.946 72.222 8.39 8.39 36.61 6.13
6753 6900 2.443394 TTCCCTAGATGCTGGGCCG 61.443 63.158 0.00 0.00 43.04 6.13
6754 6901 1.149401 GTTCCCTAGATGCTGGGCC 59.851 63.158 0.00 0.00 43.04 5.80
6755 6902 0.475906 ATGTTCCCTAGATGCTGGGC 59.524 55.000 0.00 0.00 43.04 5.36
6756 6903 1.492176 ACATGTTCCCTAGATGCTGGG 59.508 52.381 0.00 0.00 44.66 4.45
6757 6904 2.486191 GGACATGTTCCCTAGATGCTGG 60.486 54.545 0.00 0.00 38.70 4.85
6758 6905 2.171237 TGGACATGTTCCCTAGATGCTG 59.829 50.000 0.46 0.00 45.17 4.41
6759 6906 2.171448 GTGGACATGTTCCCTAGATGCT 59.829 50.000 0.46 0.00 45.17 3.79
6760 6907 2.171448 AGTGGACATGTTCCCTAGATGC 59.829 50.000 0.46 0.00 45.17 3.91
6762 6909 2.171448 GCAGTGGACATGTTCCCTAGAT 59.829 50.000 0.46 0.00 45.17 1.98
6764 6911 1.556911 AGCAGTGGACATGTTCCCTAG 59.443 52.381 0.46 0.00 45.17 3.02
6766 6913 0.037303 CAGCAGTGGACATGTTCCCT 59.963 55.000 0.46 0.00 45.17 4.20
6767 6914 1.589716 GCAGCAGTGGACATGTTCCC 61.590 60.000 0.46 0.00 45.17 3.97
6768 6915 0.890542 TGCAGCAGTGGACATGTTCC 60.891 55.000 0.46 4.58 46.13 3.62
6769 6916 0.520404 CTGCAGCAGTGGACATGTTC 59.480 55.000 14.90 0.00 0.00 3.18
6770 6917 0.109153 TCTGCAGCAGTGGACATGTT 59.891 50.000 22.10 0.00 32.61 2.71
6772 6919 1.400846 GAATCTGCAGCAGTGGACATG 59.599 52.381 22.10 0.00 32.61 3.21
6773 6920 1.747709 GAATCTGCAGCAGTGGACAT 58.252 50.000 22.10 4.99 32.61 3.06
6775 6922 0.390340 TCGAATCTGCAGCAGTGGAC 60.390 55.000 22.10 10.99 32.61 4.02
6776 6923 0.321346 TTCGAATCTGCAGCAGTGGA 59.679 50.000 22.10 7.91 32.61 4.02
6777 6924 0.445436 GTTCGAATCTGCAGCAGTGG 59.555 55.000 22.10 5.52 32.61 4.00
6778 6925 1.392853 GAGTTCGAATCTGCAGCAGTG 59.607 52.381 22.10 10.70 32.61 3.66
6781 6928 2.004733 CATGAGTTCGAATCTGCAGCA 58.995 47.619 9.47 0.00 0.00 4.41
6782 6929 2.005451 ACATGAGTTCGAATCTGCAGC 58.995 47.619 9.47 0.00 0.00 5.25
6784 6931 1.733912 GCACATGAGTTCGAATCTGCA 59.266 47.619 0.00 0.00 0.00 4.41
6785 6932 1.267235 CGCACATGAGTTCGAATCTGC 60.267 52.381 0.00 5.84 36.47 4.26
6786 6933 2.262211 TCGCACATGAGTTCGAATCTG 58.738 47.619 0.00 0.00 40.30 2.90
6787 6934 2.654749 TCGCACATGAGTTCGAATCT 57.345 45.000 0.00 0.00 40.30 2.40
6791 6938 1.344226 CGCTTCGCACATGAGTTCGA 61.344 55.000 0.00 0.00 41.46 3.71
6792 6939 1.057822 CGCTTCGCACATGAGTTCG 59.942 57.895 0.00 0.00 35.69 3.95
6815 7199 4.154918 GCAAGAATTCAGGTACTCAGGTTG 59.845 45.833 8.44 0.12 34.60 3.77
6816 7200 4.202461 TGCAAGAATTCAGGTACTCAGGTT 60.202 41.667 8.44 0.00 34.60 3.50
6825 7209 0.250901 ACCGCTGCAAGAATTCAGGT 60.251 50.000 8.44 2.66 34.07 4.00
6826 7210 1.667724 CTACCGCTGCAAGAATTCAGG 59.332 52.381 8.44 0.00 34.07 3.86
6827 7211 1.667724 CCTACCGCTGCAAGAATTCAG 59.332 52.381 8.44 0.69 34.07 3.02
6828 7212 1.003118 ACCTACCGCTGCAAGAATTCA 59.997 47.619 8.44 0.00 34.07 2.57
6830 7214 1.812571 CAACCTACCGCTGCAAGAATT 59.187 47.619 0.00 0.00 34.07 2.17
6831 7215 1.271379 ACAACCTACCGCTGCAAGAAT 60.271 47.619 0.00 0.00 34.07 2.40
6832 7216 0.107831 ACAACCTACCGCTGCAAGAA 59.892 50.000 0.00 0.00 34.07 2.52
6833 7217 0.320421 GACAACCTACCGCTGCAAGA 60.320 55.000 0.00 0.00 34.07 3.02
6836 7220 1.301401 GTGACAACCTACCGCTGCA 60.301 57.895 0.00 0.00 0.00 4.41
6837 7221 2.033194 GGTGACAACCTACCGCTGC 61.033 63.158 0.00 0.00 43.84 5.25
6838 7222 1.375523 GGGTGACAACCTACCGCTG 60.376 63.158 0.91 0.00 46.70 5.18
6839 7223 2.590114 GGGGTGACAACCTACCGCT 61.590 63.158 9.98 0.00 46.70 5.52
6840 7224 2.046604 GGGGTGACAACCTACCGC 60.047 66.667 9.98 0.00 46.70 5.68
6841 7225 1.896122 GAGGGGGTGACAACCTACCG 61.896 65.000 9.98 0.00 46.70 4.02
6842 7226 1.559965 GGAGGGGGTGACAACCTACC 61.560 65.000 9.98 2.77 46.70 3.18
6843 7227 0.546988 AGGAGGGGGTGACAACCTAC 60.547 60.000 9.98 2.94 46.70 3.18
6845 7229 1.539124 GAGGAGGGGGTGACAACCT 60.539 63.158 9.98 1.60 46.70 3.50
6846 7230 2.603652 GGAGGAGGGGGTGACAACC 61.604 68.421 0.00 0.00 46.81 3.77
6847 7231 2.955881 CGGAGGAGGGGGTGACAAC 61.956 68.421 0.00 0.00 0.00 3.32
6851 7235 2.606519 CAACGGAGGAGGGGGTGA 60.607 66.667 0.00 0.00 0.00 4.02
6852 7236 3.717294 CCAACGGAGGAGGGGGTG 61.717 72.222 0.00 0.00 0.00 4.61
6871 7256 4.704833 CACACCGTCCCCAGCTGG 62.705 72.222 26.87 26.87 0.00 4.85
6872 7257 4.704833 CCACACCGTCCCCAGCTG 62.705 72.222 6.78 6.78 0.00 4.24
6875 7260 3.246112 TTCCCACACCGTCCCCAG 61.246 66.667 0.00 0.00 0.00 4.45
6876 7261 3.562232 GTTCCCACACCGTCCCCA 61.562 66.667 0.00 0.00 0.00 4.96
6877 7262 2.420466 AATGTTCCCACACCGTCCCC 62.420 60.000 0.00 0.00 35.03 4.81
6878 7263 0.325602 TAATGTTCCCACACCGTCCC 59.674 55.000 0.00 0.00 35.03 4.46
6880 7265 6.445357 AATAATTAATGTTCCCACACCGTC 57.555 37.500 0.00 0.00 35.03 4.79
6881 7266 7.941431 TTAATAATTAATGTTCCCACACCGT 57.059 32.000 0.00 0.00 35.03 4.83
6882 7267 9.640963 TTTTTAATAATTAATGTTCCCACACCG 57.359 29.630 0.00 0.00 35.03 4.94
6911 7296 9.665264 CTTTGCGACTTTTATTTTACTTCTCTT 57.335 29.630 0.00 0.00 0.00 2.85
6912 7297 7.803659 GCTTTGCGACTTTTATTTTACTTCTCT 59.196 33.333 0.00 0.00 0.00 3.10
6914 7299 7.649057 AGCTTTGCGACTTTTATTTTACTTCT 58.351 30.769 0.00 0.00 0.00 2.85
6915 7300 7.853377 AGCTTTGCGACTTTTATTTTACTTC 57.147 32.000 0.00 0.00 0.00 3.01
6916 7301 7.381408 GGAAGCTTTGCGACTTTTATTTTACTT 59.619 33.333 0.00 0.00 0.00 2.24
6917 7302 6.861572 GGAAGCTTTGCGACTTTTATTTTACT 59.138 34.615 0.00 0.00 0.00 2.24
6918 7303 7.034416 GGAAGCTTTGCGACTTTTATTTTAC 57.966 36.000 0.00 0.00 0.00 2.01
6983 7468 1.541379 GTTTTGGGCCGTAATGACCT 58.459 50.000 0.00 0.00 0.00 3.85
6989 7474 1.540707 GGAAATCGTTTTGGGCCGTAA 59.459 47.619 0.00 0.00 0.00 3.18
7069 7586 6.946229 TGAGTCGTGAAATAAGTAGCTTTC 57.054 37.500 0.00 0.00 33.06 2.62
7070 7587 7.724305 TTTGAGTCGTGAAATAAGTAGCTTT 57.276 32.000 0.00 0.00 0.00 3.51
7071 7588 7.724305 TTTTGAGTCGTGAAATAAGTAGCTT 57.276 32.000 0.00 0.00 0.00 3.74
7072 7589 7.724305 TTTTTGAGTCGTGAAATAAGTAGCT 57.276 32.000 0.00 0.00 0.00 3.32
7073 7590 8.950403 AATTTTTGAGTCGTGAAATAAGTAGC 57.050 30.769 0.44 0.00 0.00 3.58
7077 7594 9.588774 TCGTTAATTTTTGAGTCGTGAAATAAG 57.411 29.630 0.00 0.00 0.00 1.73
7078 7595 9.372541 GTCGTTAATTTTTGAGTCGTGAAATAA 57.627 29.630 0.00 0.00 0.00 1.40
7081 7619 6.193761 GGTCGTTAATTTTTGAGTCGTGAAA 58.806 36.000 0.00 0.00 0.00 2.69
7139 7679 9.515226 TTTTTGAAGTGTAGTATAGATGGCTTT 57.485 29.630 0.00 0.00 0.00 3.51
7188 7731 2.808543 GGCGACTTTCAGTCATCAAAGT 59.191 45.455 4.82 0.00 45.30 2.66
7193 7736 0.723981 GCAGGCGACTTTCAGTCATC 59.276 55.000 0.00 0.00 45.30 2.92
7194 7737 0.035317 TGCAGGCGACTTTCAGTCAT 59.965 50.000 0.00 0.00 45.30 3.06
7195 7738 0.179059 TTGCAGGCGACTTTCAGTCA 60.179 50.000 0.00 0.00 45.30 3.41
7196 7739 0.235926 GTTGCAGGCGACTTTCAGTC 59.764 55.000 4.39 0.00 41.71 3.51
7198 7741 0.236711 CAGTTGCAGGCGACTTTCAG 59.763 55.000 11.41 0.00 40.21 3.02
7232 7776 2.357777 GCCACTTTATTTCCCTAGGCCA 60.358 50.000 5.01 0.00 34.94 5.36
7252 7796 8.825745 CAGAGATCTTTATTTACCTCTCAAAGC 58.174 37.037 0.00 0.00 33.27 3.51
7321 7865 2.725203 TTTCTTGCTCGGGTCCGGTG 62.725 60.000 9.68 4.51 40.25 4.94
7322 7866 2.047213 TTTTCTTGCTCGGGTCCGGT 62.047 55.000 9.68 0.00 40.25 5.28
7328 7872 1.497722 GACGCTTTTCTTGCTCGGG 59.502 57.895 0.00 0.00 0.00 5.14
7330 7874 1.507919 GCGACGCTTTTCTTGCTCG 60.508 57.895 13.73 0.00 35.69 5.03
7331 7875 1.154395 GGCGACGCTTTTCTTGCTC 60.154 57.895 20.77 0.00 0.00 4.26
7332 7876 1.237285 ATGGCGACGCTTTTCTTGCT 61.237 50.000 20.77 0.00 0.00 3.91
7333 7877 0.387239 AATGGCGACGCTTTTCTTGC 60.387 50.000 20.77 0.24 0.00 4.01
7334 7878 2.050477 AAATGGCGACGCTTTTCTTG 57.950 45.000 20.77 0.00 0.00 3.02
7335 7879 2.393764 CAAAATGGCGACGCTTTTCTT 58.606 42.857 20.77 4.47 0.00 2.52
7337 7881 1.059942 CCAAAATGGCGACGCTTTTC 58.940 50.000 20.77 3.07 0.00 2.29
7364 7908 3.558418 CAGCTTGTTTTGATTTTGCAGCT 59.442 39.130 0.00 0.00 0.00 4.24
7383 7927 3.721035 ACTGAAAAGCAAAATGGACAGC 58.279 40.909 0.00 0.00 0.00 4.40
7384 7928 4.980434 CAGACTGAAAAGCAAAATGGACAG 59.020 41.667 0.00 0.00 0.00 3.51
7386 7930 4.936891 ACAGACTGAAAAGCAAAATGGAC 58.063 39.130 10.08 0.00 0.00 4.02
7388 7932 5.241506 TCCTACAGACTGAAAAGCAAAATGG 59.758 40.000 10.08 0.00 0.00 3.16
7401 7946 6.656632 TCTAGGCATTATTCCTACAGACTG 57.343 41.667 0.00 0.00 35.21 3.51
7421 7966 2.395336 ATGCCTGGAGAGATGCTCTA 57.605 50.000 0.00 0.00 41.35 2.43
7422 7967 2.250031 CTATGCCTGGAGAGATGCTCT 58.750 52.381 0.00 0.00 44.28 4.09
7431 7976 2.036217 CTCTTCTCTGCTATGCCTGGAG 59.964 54.545 0.00 0.00 0.00 3.86
7438 7983 5.766670 AGTCTCTCATCTCTTCTCTGCTATG 59.233 44.000 0.00 0.00 0.00 2.23
7439 7984 5.945310 AGTCTCTCATCTCTTCTCTGCTAT 58.055 41.667 0.00 0.00 0.00 2.97
7440 7985 5.372343 AGTCTCTCATCTCTTCTCTGCTA 57.628 43.478 0.00 0.00 0.00 3.49
7441 7986 4.240881 AGTCTCTCATCTCTTCTCTGCT 57.759 45.455 0.00 0.00 0.00 4.24
7442 7987 4.440525 CCAAGTCTCTCATCTCTTCTCTGC 60.441 50.000 0.00 0.00 0.00 4.26
7443 7988 4.440525 GCCAAGTCTCTCATCTCTTCTCTG 60.441 50.000 0.00 0.00 0.00 3.35
7444 7989 3.701040 GCCAAGTCTCTCATCTCTTCTCT 59.299 47.826 0.00 0.00 0.00 3.10
7445 7990 3.701040 AGCCAAGTCTCTCATCTCTTCTC 59.299 47.826 0.00 0.00 0.00 2.87
7446 7991 3.448301 CAGCCAAGTCTCTCATCTCTTCT 59.552 47.826 0.00 0.00 0.00 2.85
7447 7992 3.430651 CCAGCCAAGTCTCTCATCTCTTC 60.431 52.174 0.00 0.00 0.00 2.87
7448 7993 2.500910 CCAGCCAAGTCTCTCATCTCTT 59.499 50.000 0.00 0.00 0.00 2.85
7449 7994 2.109774 CCAGCCAAGTCTCTCATCTCT 58.890 52.381 0.00 0.00 0.00 3.10
7450 7995 1.830477 ACCAGCCAAGTCTCTCATCTC 59.170 52.381 0.00 0.00 0.00 2.75
7451 7996 1.830477 GACCAGCCAAGTCTCTCATCT 59.170 52.381 0.00 0.00 0.00 2.90
7452 7997 1.830477 AGACCAGCCAAGTCTCTCATC 59.170 52.381 0.00 0.00 40.61 2.92
7453 7998 1.554160 CAGACCAGCCAAGTCTCTCAT 59.446 52.381 0.00 0.00 42.69 2.90
7454 7999 0.972134 CAGACCAGCCAAGTCTCTCA 59.028 55.000 0.00 0.00 42.69 3.27
7455 8000 1.261480 TCAGACCAGCCAAGTCTCTC 58.739 55.000 0.00 0.00 42.69 3.20
7456 8001 1.722034 TTCAGACCAGCCAAGTCTCT 58.278 50.000 0.00 0.00 42.69 3.10
7457 8002 2.777832 ATTCAGACCAGCCAAGTCTC 57.222 50.000 0.00 0.00 42.69 3.36
7458 8003 3.515602 AAATTCAGACCAGCCAAGTCT 57.484 42.857 0.00 0.00 45.45 3.24
7459 8004 3.823304 AGAAAATTCAGACCAGCCAAGTC 59.177 43.478 0.00 0.00 34.31 3.01
7460 8005 3.837355 AGAAAATTCAGACCAGCCAAGT 58.163 40.909 0.00 0.00 0.00 3.16
7461 8006 4.861102 AAGAAAATTCAGACCAGCCAAG 57.139 40.909 0.00 0.00 0.00 3.61
7462 8007 4.405358 ACAAAGAAAATTCAGACCAGCCAA 59.595 37.500 0.00 0.00 0.00 4.52
7463 8008 3.960102 ACAAAGAAAATTCAGACCAGCCA 59.040 39.130 0.00 0.00 0.00 4.75
7464 8009 4.590850 ACAAAGAAAATTCAGACCAGCC 57.409 40.909 0.00 0.00 0.00 4.85
7465 8010 5.351458 ACAACAAAGAAAATTCAGACCAGC 58.649 37.500 0.00 0.00 0.00 4.85
7466 8011 6.799512 AGACAACAAAGAAAATTCAGACCAG 58.200 36.000 0.00 0.00 0.00 4.00
7478 8023 5.943416 TGGACAGAAAGAAGACAACAAAGAA 59.057 36.000 0.00 0.00 0.00 2.52
7479 8024 5.496556 TGGACAGAAAGAAGACAACAAAGA 58.503 37.500 0.00 0.00 0.00 2.52
7480 8025 5.355350 ACTGGACAGAAAGAAGACAACAAAG 59.645 40.000 6.29 0.00 0.00 2.77
7481 8026 5.253330 ACTGGACAGAAAGAAGACAACAAA 58.747 37.500 6.29 0.00 0.00 2.83
7482 8027 4.843728 ACTGGACAGAAAGAAGACAACAA 58.156 39.130 6.29 0.00 0.00 2.83
7483 8028 4.442706 GACTGGACAGAAAGAAGACAACA 58.557 43.478 6.29 0.00 0.00 3.33
7484 8029 3.810386 GGACTGGACAGAAAGAAGACAAC 59.190 47.826 6.29 0.00 0.00 3.32
7485 8030 3.181454 GGGACTGGACAGAAAGAAGACAA 60.181 47.826 6.29 0.00 0.00 3.18
7486 8031 2.368875 GGGACTGGACAGAAAGAAGACA 59.631 50.000 6.29 0.00 0.00 3.41
7487 8032 2.610727 CGGGACTGGACAGAAAGAAGAC 60.611 54.545 6.29 0.00 0.00 3.01
7488 8033 1.618837 CGGGACTGGACAGAAAGAAGA 59.381 52.381 6.29 0.00 0.00 2.87
7489 8034 1.344763 ACGGGACTGGACAGAAAGAAG 59.655 52.381 6.29 0.00 0.00 2.85
7502 8047 3.022406 GACACCTATACTTGACGGGACT 58.978 50.000 0.00 0.00 0.00 3.85
7515 8060 7.562259 TGAGCTAGACTAGATAGACACCTAT 57.438 40.000 13.91 0.00 38.26 2.57
7516 8061 6.997942 TGAGCTAGACTAGATAGACACCTA 57.002 41.667 13.91 0.00 0.00 3.08
7520 8065 8.988546 ATTTCTTGAGCTAGACTAGATAGACA 57.011 34.615 13.91 1.67 0.00 3.41
7526 8071 7.394641 TCTGTCAATTTCTTGAGCTAGACTAGA 59.605 37.037 13.91 0.00 41.96 2.43
7527 8072 7.487829 GTCTGTCAATTTCTTGAGCTAGACTAG 59.512 40.741 5.03 5.03 41.96 2.57
7528 8073 7.039714 TGTCTGTCAATTTCTTGAGCTAGACTA 60.040 37.037 18.16 9.47 41.96 2.59
7529 8074 6.162777 GTCTGTCAATTTCTTGAGCTAGACT 58.837 40.000 14.04 0.00 41.96 3.24
7530 8075 5.928839 TGTCTGTCAATTTCTTGAGCTAGAC 59.071 40.000 14.25 14.25 41.96 2.59
7564 8109 5.484715 CCACAAATCTGAATTCCATGCTTT 58.515 37.500 2.27 0.00 0.00 3.51
7565 8110 4.081309 CCCACAAATCTGAATTCCATGCTT 60.081 41.667 2.27 0.00 0.00 3.91
7566 8111 3.449737 CCCACAAATCTGAATTCCATGCT 59.550 43.478 2.27 0.00 0.00 3.79
7567 8112 3.448301 TCCCACAAATCTGAATTCCATGC 59.552 43.478 2.27 0.00 0.00 4.06
7583 8128 2.916269 TCCCACAATACTGAATCCCACA 59.084 45.455 0.00 0.00 0.00 4.17
7584 8129 3.644966 TCCCACAATACTGAATCCCAC 57.355 47.619 0.00 0.00 0.00 4.61
7585 8130 4.229353 TCAATCCCACAATACTGAATCCCA 59.771 41.667 0.00 0.00 0.00 4.37
7586 8131 4.792068 TCAATCCCACAATACTGAATCCC 58.208 43.478 0.00 0.00 0.00 3.85
7595 8140 3.140707 AGATGCCCATCAATCCCACAATA 59.859 43.478 10.58 0.00 40.22 1.90
7596 8141 2.090943 AGATGCCCATCAATCCCACAAT 60.091 45.455 10.58 0.00 40.22 2.71
7597 8142 1.288633 AGATGCCCATCAATCCCACAA 59.711 47.619 10.58 0.00 40.22 3.33
7623 8168 0.185175 TACCGGAGCCTGAGCATCTA 59.815 55.000 9.46 0.00 43.56 1.98
7627 8172 3.461773 GCTACCGGAGCCTGAGCA 61.462 66.667 9.46 0.00 46.41 4.26
7649 8194 3.677099 AAATTTAGCCCGCGCGTGC 62.677 57.895 29.84 29.84 41.18 5.34
7652 8197 2.350760 CGAAATTTAGCCCGCGCG 60.351 61.111 25.67 25.67 41.18 6.86
7653 8198 1.582680 CACGAAATTTAGCCCGCGC 60.583 57.895 0.00 0.00 0.00 6.86
7654 8199 0.167251 AACACGAAATTTAGCCCGCG 59.833 50.000 0.00 0.00 0.00 6.46
7655 8200 2.341318 AAACACGAAATTTAGCCCGC 57.659 45.000 0.00 0.00 0.00 6.13
7656 8201 3.666797 GTCAAAACACGAAATTTAGCCCG 59.333 43.478 0.00 0.00 0.00 6.13
7657 8202 3.985279 GGTCAAAACACGAAATTTAGCCC 59.015 43.478 0.00 0.00 0.00 5.19
7659 8204 4.866921 AGGGTCAAAACACGAAATTTAGC 58.133 39.130 0.00 0.00 32.44 3.09
7660 8205 7.305763 CGAAAAGGGTCAAAACACGAAATTTAG 60.306 37.037 0.00 0.00 32.44 1.85
7661 8206 6.472808 CGAAAAGGGTCAAAACACGAAATTTA 59.527 34.615 0.00 0.00 32.44 1.40
7662 8207 5.289917 CGAAAAGGGTCAAAACACGAAATTT 59.710 36.000 0.00 0.00 32.44 1.82
7663 8208 4.801516 CGAAAAGGGTCAAAACACGAAATT 59.198 37.500 0.00 0.00 32.44 1.82
7664 8209 4.356289 CGAAAAGGGTCAAAACACGAAAT 58.644 39.130 0.00 0.00 32.44 2.17
7665 8210 3.760537 CGAAAAGGGTCAAAACACGAAA 58.239 40.909 0.00 0.00 32.44 3.46
7666 8211 2.478200 GCGAAAAGGGTCAAAACACGAA 60.478 45.455 0.00 0.00 32.44 3.85
7667 8212 1.064357 GCGAAAAGGGTCAAAACACGA 59.936 47.619 0.00 0.00 32.44 4.35
7668 8213 1.202200 TGCGAAAAGGGTCAAAACACG 60.202 47.619 0.00 0.00 32.44 4.49
7669 8214 2.570442 TGCGAAAAGGGTCAAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
7670 8215 4.138290 TCTATGCGAAAAGGGTCAAAACA 58.862 39.130 0.00 0.00 0.00 2.83
7671 8216 4.759516 TCTATGCGAAAAGGGTCAAAAC 57.240 40.909 0.00 0.00 0.00 2.43
7672 8217 5.776173 TTTCTATGCGAAAAGGGTCAAAA 57.224 34.783 0.00 0.00 38.62 2.44
7673 8218 5.975693 ATTTCTATGCGAAAAGGGTCAAA 57.024 34.783 0.00 0.00 44.25 2.69
7674 8219 5.475220 TGAATTTCTATGCGAAAAGGGTCAA 59.525 36.000 0.00 0.00 44.25 3.18
7675 8220 5.007034 TGAATTTCTATGCGAAAAGGGTCA 58.993 37.500 0.00 0.00 44.25 4.02
7676 8221 5.560966 TGAATTTCTATGCGAAAAGGGTC 57.439 39.130 0.00 0.00 44.25 4.46
7677 8222 5.975693 TTGAATTTCTATGCGAAAAGGGT 57.024 34.783 0.00 0.00 44.25 4.34
7678 8223 7.761249 AGATTTTGAATTTCTATGCGAAAAGGG 59.239 33.333 0.00 0.00 44.25 3.95
7679 8224 8.693542 AGATTTTGAATTTCTATGCGAAAAGG 57.306 30.769 0.00 0.00 44.25 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.