Multiple sequence alignment - TraesCS6A01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G091200 chr6A 100.000 4386 0 0 1622 6007 59807387 59811772 0.000000e+00 8100.0
1 TraesCS6A01G091200 chr6A 100.000 1167 0 0 1 1167 59805766 59806932 0.000000e+00 2156.0
2 TraesCS6A01G091200 chr6A 92.436 899 60 4 4270 5160 59785901 59786799 0.000000e+00 1277.0
3 TraesCS6A01G091200 chr6A 93.386 756 35 6 5152 5896 59786818 59787569 0.000000e+00 1105.0
4 TraesCS6A01G091200 chr6A 100.000 543 0 0 6251 6793 59812016 59812558 0.000000e+00 1003.0
5 TraesCS6A01G091200 chr6A 86.211 921 88 16 4270 5153 59708946 59709864 0.000000e+00 961.0
6 TraesCS6A01G091200 chr6A 89.362 752 67 4 5156 5898 59709895 59710642 0.000000e+00 933.0
7 TraesCS6A01G091200 chr6A 83.370 920 109 28 4270 5154 59676356 59677266 0.000000e+00 811.0
8 TraesCS6A01G091200 chr6A 90.943 541 42 5 1622 2160 184394683 184395218 0.000000e+00 721.0
9 TraesCS6A01G091200 chr6A 91.421 373 25 3 2458 2824 59783303 59783674 7.860000e-139 505.0
10 TraesCS6A01G091200 chr6A 86.970 330 26 7 3541 3868 59784328 59784642 8.380000e-94 355.0
11 TraesCS6A01G091200 chr6A 89.116 294 21 7 6500 6793 597037082 597036800 8.380000e-94 355.0
12 TraesCS6A01G091200 chr6A 86.047 258 27 6 3935 4184 59784661 59784917 1.120000e-67 268.0
13 TraesCS6A01G091200 chr6A 97.561 123 3 0 1 123 466755629 466755507 1.920000e-50 211.0
14 TraesCS6A01G091200 chr6A 89.062 64 3 2 3867 3926 289025690 289025627 7.310000e-10 76.8
15 TraesCS6A01G091200 chr6D 96.712 3589 101 16 2432 6007 45478061 45481645 0.000000e+00 5958.0
16 TraesCS6A01G091200 chr6D 83.882 1458 163 40 4269 5661 80290615 80292065 0.000000e+00 1325.0
17 TraesCS6A01G091200 chr6D 91.991 899 63 4 4270 5160 45209068 45209965 0.000000e+00 1253.0
18 TraesCS6A01G091200 chr6D 92.338 757 44 5 5152 5898 45209984 45210736 0.000000e+00 1064.0
19 TraesCS6A01G091200 chr6D 86.374 910 93 15 4270 5150 45203663 45204570 0.000000e+00 965.0
20 TraesCS6A01G091200 chr6D 90.175 743 60 4 5165 5898 45204613 45205351 0.000000e+00 955.0
21 TraesCS6A01G091200 chr6D 93.238 488 26 5 1676 2160 131698883 131698400 0.000000e+00 712.0
22 TraesCS6A01G091200 chr6D 87.602 492 51 7 5156 5638 44864427 44864917 4.600000e-156 562.0
23 TraesCS6A01G091200 chr6D 81.124 694 67 15 126 798 45476732 45477382 1.320000e-136 497.0
24 TraesCS6A01G091200 chr6D 94.949 297 14 1 6497 6793 216846240 216846535 1.330000e-126 464.0
25 TraesCS6A01G091200 chr6D 88.281 384 27 4 2458 2824 45206309 45206691 1.740000e-120 444.0
26 TraesCS6A01G091200 chr6D 83.643 269 28 13 3004 3272 45206923 45207175 8.800000e-59 239.0
27 TraesCS6A01G091200 chr6D 97.059 136 4 0 6365 6500 216845862 216845997 5.300000e-56 230.0
28 TraesCS6A01G091200 chr6D 87.356 174 12 5 3541 3712 45207280 45207445 2.500000e-44 191.0
29 TraesCS6A01G091200 chr6D 80.784 255 27 13 3935 4184 45207569 45207806 5.410000e-41 180.0
30 TraesCS6A01G091200 chr6D 88.073 109 6 1 6251 6359 45481669 45481770 9.250000e-24 122.0
31 TraesCS6A01G091200 chr6D 88.043 92 9 2 3777 3868 45207461 45207550 2.590000e-19 108.0
32 TraesCS6A01G091200 chr6D 89.062 64 3 2 3867 3926 203747296 203747233 7.310000e-10 76.8
33 TraesCS6A01G091200 chr6D 86.567 67 7 2 3864 3929 447883208 447883273 9.450000e-09 73.1
34 TraesCS6A01G091200 chr6B 95.210 1503 64 6 4511 6007 114026224 114027724 0.000000e+00 2370.0
35 TraesCS6A01G091200 chr6B 91.281 757 52 5 5152 5898 113847696 113848448 0.000000e+00 1020.0
36 TraesCS6A01G091200 chr6B 88.830 752 71 4 5156 5898 113783780 113784527 0.000000e+00 911.0
37 TraesCS6A01G091200 chr6B 85.957 648 80 6 4516 5154 113771204 113771849 0.000000e+00 682.0
38 TraesCS6A01G091200 chr6B 88.969 553 49 8 5156 5698 113657044 113657594 0.000000e+00 673.0
39 TraesCS6A01G091200 chr6B 90.675 504 39 3 4270 4765 113846809 113847312 0.000000e+00 664.0
40 TraesCS6A01G091200 chr6B 83.860 601 68 16 4270 4841 113782578 113783178 4.630000e-151 545.0
41 TraesCS6A01G091200 chr6B 95.816 239 9 1 2586 2824 113843649 113843886 1.070000e-102 385.0
42 TraesCS6A01G091200 chr6B 91.561 237 19 1 4270 4505 114018753 114018989 6.570000e-85 326.0
43 TraesCS6A01G091200 chr6B 95.146 103 5 0 2458 2560 113843471 113843573 5.450000e-36 163.0
44 TraesCS6A01G091200 chr6B 87.143 70 4 2 4044 4108 113844191 113844260 2.630000e-09 75.0
45 TraesCS6A01G091200 chr2D 94.154 479 25 2 1683 2160 35521485 35521009 0.000000e+00 726.0
46 TraesCS6A01G091200 chr2D 93.856 472 22 5 1691 2160 142437394 142436928 0.000000e+00 704.0
47 TraesCS6A01G091200 chr2D 93.174 293 16 3 6497 6789 626872304 626872592 1.750000e-115 427.0
48 TraesCS6A01G091200 chr2D 90.244 328 22 4 849 1166 625193054 625192727 2.930000e-113 420.0
49 TraesCS6A01G091200 chr2D 89.000 300 23 7 6497 6790 584597122 584597417 5.010000e-96 363.0
50 TraesCS6A01G091200 chr2D 86.957 322 37 5 847 1167 139720647 139720964 2.330000e-94 357.0
51 TraesCS6A01G091200 chr2D 86.000 250 34 1 2153 2402 625191487 625191239 4.040000e-67 267.0
52 TraesCS6A01G091200 chr2D 94.074 135 8 0 6366 6500 626871934 626872068 8.930000e-49 206.0
53 TraesCS6A01G091200 chr2D 88.636 132 15 0 6367 6498 13618917 13619048 1.960000e-35 161.0
54 TraesCS6A01G091200 chr5D 90.672 536 42 8 1627 2160 557770768 557770239 0.000000e+00 706.0
55 TraesCS6A01G091200 chr5D 88.725 541 53 8 1622 2160 277616834 277617368 0.000000e+00 654.0
56 TraesCS6A01G091200 chr5D 88.401 319 27 6 851 1167 425020978 425020668 6.430000e-100 375.0
57 TraesCS6A01G091200 chr5D 88.571 70 7 1 3867 3935 450946878 450946809 4.370000e-12 84.2
58 TraesCS6A01G091200 chr2A 96.065 432 16 1 6362 6793 59744084 59743654 0.000000e+00 702.0
59 TraesCS6A01G091200 chr2A 97.561 123 3 0 1 123 119132861 119132739 1.920000e-50 211.0
60 TraesCS6A01G091200 chr2A 92.647 136 10 0 6365 6500 70937305 70937170 5.370000e-46 196.0
61 TraesCS6A01G091200 chr7A 95.785 427 16 2 6367 6793 502009991 502009567 0.000000e+00 688.0
62 TraesCS6A01G091200 chr7A 87.755 294 30 3 6497 6790 82214258 82214545 8.440000e-89 339.0
63 TraesCS6A01G091200 chr7A 89.600 250 26 0 2153 2402 651178326 651178575 1.100000e-82 318.0
64 TraesCS6A01G091200 chr7A 97.561 123 3 0 1 123 542607776 542607898 1.920000e-50 211.0
65 TraesCS6A01G091200 chr7A 97.561 123 3 0 1 123 641023505 641023627 1.920000e-50 211.0
66 TraesCS6A01G091200 chr7A 96.032 126 5 0 1 126 505874184 505874309 8.930000e-49 206.0
67 TraesCS6A01G091200 chr7A 92.647 136 10 0 6365 6500 82213880 82214015 5.370000e-46 196.0
68 TraesCS6A01G091200 chr1D 89.834 541 47 8 1622 2160 493699052 493699586 0.000000e+00 688.0
69 TraesCS6A01G091200 chr1D 89.968 309 26 4 839 1145 260980727 260981032 1.780000e-105 394.0
70 TraesCS6A01G091200 chr1D 92.509 267 20 0 849 1115 328891953 328891687 3.840000e-102 383.0
71 TraesCS6A01G091200 chr1D 92.369 249 19 0 2153 2401 113906151 113906399 8.380000e-94 355.0
72 TraesCS6A01G091200 chr1D 91.600 250 21 0 2153 2402 16969562 16969811 5.040000e-91 346.0
73 TraesCS6A01G091200 chr1D 90.400 250 24 0 2153 2402 119304115 119304364 5.080000e-86 329.0
74 TraesCS6A01G091200 chr4D 89.522 544 49 7 1622 2160 84236648 84237188 0.000000e+00 682.0
75 TraesCS6A01G091200 chr4D 87.066 317 36 4 852 1167 94418221 94417909 3.010000e-93 353.0
76 TraesCS6A01G091200 chr1B 90.057 523 45 4 1643 2160 371504233 371504753 0.000000e+00 671.0
77 TraesCS6A01G091200 chr7D 89.602 327 24 5 851 1167 105202506 105202180 2.280000e-109 407.0
78 TraesCS6A01G091200 chr7D 91.600 250 21 0 2153 2402 105200086 105199837 5.040000e-91 346.0
79 TraesCS6A01G091200 chr7D 88.525 61 3 2 3868 3927 353937210 353937267 3.400000e-08 71.3
80 TraesCS6A01G091200 chr7D 100.000 30 0 0 3375 3404 575360434 575360405 1.000000e-03 56.5
81 TraesCS6A01G091200 chr2B 88.182 330 28 2 849 1167 573187816 573188145 3.840000e-102 383.0
82 TraesCS6A01G091200 chr2B 93.436 259 15 2 844 1102 573214427 573214683 3.840000e-102 383.0
83 TraesCS6A01G091200 chr3D 92.748 262 19 0 850 1111 80576118 80575857 4.970000e-101 379.0
84 TraesCS6A01G091200 chr3D 90.789 228 21 0 2153 2380 80573395 80573168 8.560000e-79 305.0
85 TraesCS6A01G091200 chr1A 89.632 299 25 4 6497 6793 300925872 300926166 6.430000e-100 375.0
86 TraesCS6A01G091200 chr4A 87.850 321 32 5 849 1167 45153827 45154142 2.990000e-98 370.0
87 TraesCS6A01G091200 chr5A 87.879 297 28 7 6499 6790 706478755 706478462 6.520000e-90 342.0
88 TraesCS6A01G091200 chr5A 83.077 260 33 5 2153 2402 170087729 170087987 6.850000e-55 226.0
89 TraesCS6A01G091200 chr5A 96.800 125 4 0 1 125 616192050 616192174 6.900000e-50 209.0
90 TraesCS6A01G091200 chr5A 90.769 65 4 2 3866 3928 6485128 6485192 1.210000e-12 86.1
91 TraesCS6A01G091200 chr5A 87.143 70 3 4 3867 3935 594959697 594959633 2.630000e-09 75.0
92 TraesCS6A01G091200 chr3A 88.889 252 26 2 2153 2404 484651858 484651609 6.620000e-80 309.0
93 TraesCS6A01G091200 chr3A 97.561 123 3 0 1 123 91559066 91559188 1.920000e-50 211.0
94 TraesCS6A01G091200 chr3A 97.561 123 3 0 1 123 525745044 525744922 1.920000e-50 211.0
95 TraesCS6A01G091200 chr3A 96.774 124 4 0 1 124 544964079 544963956 2.480000e-49 207.0
96 TraesCS6A01G091200 chr5B 76.442 624 92 30 191 798 439696040 439696624 3.100000e-73 287.0
97 TraesCS6A01G091200 chr5B 88.406 138 16 0 6363 6500 525420413 525420550 4.210000e-37 167.0
98 TraesCS6A01G091200 chr5B 88.235 102 9 2 308 407 576436019 576435919 1.200000e-22 119.0
99 TraesCS6A01G091200 chr7B 89.474 133 14 0 6366 6498 72077931 72078063 1.170000e-37 169.0
100 TraesCS6A01G091200 chr7B 97.436 39 1 0 2452 2490 684367695 684367733 4.400000e-07 67.6
101 TraesCS6A01G091200 chr3B 91.549 71 2 2 3866 3935 411444000 411443933 2.020000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G091200 chr6A 59805766 59812558 6792 False 3753.000000 8100 100.000000 1 6793 3 chr6A.!!$F5 6792
1 TraesCS6A01G091200 chr6A 59708946 59710642 1696 False 947.000000 961 87.786500 4270 5898 2 chr6A.!!$F3 1628
2 TraesCS6A01G091200 chr6A 59676356 59677266 910 False 811.000000 811 83.370000 4270 5154 1 chr6A.!!$F1 884
3 TraesCS6A01G091200 chr6A 184394683 184395218 535 False 721.000000 721 90.943000 1622 2160 1 chr6A.!!$F2 538
4 TraesCS6A01G091200 chr6A 59783303 59787569 4266 False 702.000000 1277 90.052000 2458 5896 5 chr6A.!!$F4 3438
5 TraesCS6A01G091200 chr6D 45476732 45481770 5038 False 2192.333333 5958 88.636333 126 6359 3 chr6D.!!$F5 6233
6 TraesCS6A01G091200 chr6D 80290615 80292065 1450 False 1325.000000 1325 83.882000 4269 5661 1 chr6D.!!$F2 1392
7 TraesCS6A01G091200 chr6D 45203663 45210736 7073 False 599.888889 1253 87.665000 2458 5898 9 chr6D.!!$F4 3440
8 TraesCS6A01G091200 chr6D 216845862 216846535 673 False 347.000000 464 96.004000 6365 6793 2 chr6D.!!$F6 428
9 TraesCS6A01G091200 chr6B 114026224 114027724 1500 False 2370.000000 2370 95.210000 4511 6007 1 chr6B.!!$F4 1496
10 TraesCS6A01G091200 chr6B 113782578 113784527 1949 False 728.000000 911 86.345000 4270 5898 2 chr6B.!!$F5 1628
11 TraesCS6A01G091200 chr6B 113771204 113771849 645 False 682.000000 682 85.957000 4516 5154 1 chr6B.!!$F2 638
12 TraesCS6A01G091200 chr6B 113657044 113657594 550 False 673.000000 673 88.969000 5156 5698 1 chr6B.!!$F1 542
13 TraesCS6A01G091200 chr6B 113843471 113848448 4977 False 461.400000 1020 92.012200 2458 5898 5 chr6B.!!$F6 3440
14 TraesCS6A01G091200 chr2D 625191239 625193054 1815 True 343.500000 420 88.122000 849 2402 2 chr2D.!!$R3 1553
15 TraesCS6A01G091200 chr2D 626871934 626872592 658 False 316.500000 427 93.624000 6366 6789 2 chr2D.!!$F4 423
16 TraesCS6A01G091200 chr5D 557770239 557770768 529 True 706.000000 706 90.672000 1627 2160 1 chr5D.!!$R3 533
17 TraesCS6A01G091200 chr5D 277616834 277617368 534 False 654.000000 654 88.725000 1622 2160 1 chr5D.!!$F1 538
18 TraesCS6A01G091200 chr7A 82213880 82214545 665 False 267.500000 339 90.201000 6365 6790 2 chr7A.!!$F5 425
19 TraesCS6A01G091200 chr1D 493699052 493699586 534 False 688.000000 688 89.834000 1622 2160 1 chr1D.!!$F5 538
20 TraesCS6A01G091200 chr4D 84236648 84237188 540 False 682.000000 682 89.522000 1622 2160 1 chr4D.!!$F1 538
21 TraesCS6A01G091200 chr1B 371504233 371504753 520 False 671.000000 671 90.057000 1643 2160 1 chr1B.!!$F1 517
22 TraesCS6A01G091200 chr7D 105199837 105202506 2669 True 376.500000 407 90.601000 851 2402 2 chr7D.!!$R2 1551
23 TraesCS6A01G091200 chr3D 80573168 80576118 2950 True 342.000000 379 91.768500 850 2380 2 chr3D.!!$R1 1530
24 TraesCS6A01G091200 chr5B 439696040 439696624 584 False 287.000000 287 76.442000 191 798 1 chr5B.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.035739 TAACTGAAGGTGAACCGGCC 59.964 55.000 0.00 0.0 42.08 6.13 F
810 856 0.037447 TGCCATCATCGACCCAAACA 59.963 50.000 0.00 0.0 0.00 2.83 F
2218 4510 0.467290 AACCGTGGCTGAACAATGGT 60.467 50.000 0.00 0.0 34.07 3.55 F
3319 5914 0.933796 GCCTCAGACTTAGCGCATTC 59.066 55.000 11.47 0.0 0.00 2.67 F
3466 6062 2.043992 TCTTCACCTCCGAAACCTTCA 58.956 47.619 0.00 0.0 0.00 3.02 F
4882 10179 2.223745 GACTTTGTACCAAAAGGCGGA 58.776 47.619 9.70 0.0 40.74 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2475 0.042188 CAAACGAGAGCACAACCACG 60.042 55.0 0.00 0.0 0.00 4.94 R
2415 4707 0.034337 ACGCTCCGCTTTTGGTTAGA 59.966 50.0 0.00 0.0 0.00 2.10 R
3406 6002 0.246360 TTGCATCCGACGACTCACAT 59.754 50.0 0.00 0.0 0.00 3.21 R
4882 10179 0.332972 GGGGATTTTCTCTGGCTGGT 59.667 55.0 0.00 0.0 0.00 4.00 R
5276 10629 2.001812 TTTGCTGCAAAGACGCAAAA 57.998 40.0 22.84 0.0 46.78 2.44 R
6701 12319 0.454600 TCAGGCCGCTAGTACGAAAG 59.545 55.0 0.00 0.0 34.06 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.640761 GCTCTGGGCCTCTAAGCT 58.359 61.111 4.53 0.00 34.27 3.74
20 21 0.179059 GCTCTGGGCCTCTAAGCTTC 60.179 60.000 0.00 0.00 34.27 3.86
21 22 1.198713 CTCTGGGCCTCTAAGCTTCA 58.801 55.000 0.00 0.00 0.00 3.02
22 23 1.767681 CTCTGGGCCTCTAAGCTTCAT 59.232 52.381 0.00 0.00 0.00 2.57
23 24 1.765314 TCTGGGCCTCTAAGCTTCATC 59.235 52.381 0.00 0.00 0.00 2.92
24 25 0.839946 TGGGCCTCTAAGCTTCATCC 59.160 55.000 0.00 0.00 0.00 3.51
25 26 0.250081 GGGCCTCTAAGCTTCATCCG 60.250 60.000 0.00 0.00 0.00 4.18
26 27 0.466124 GGCCTCTAAGCTTCATCCGT 59.534 55.000 0.00 0.00 0.00 4.69
28 29 2.102588 GGCCTCTAAGCTTCATCCGTAA 59.897 50.000 0.00 0.00 0.00 3.18
29 30 3.431766 GGCCTCTAAGCTTCATCCGTAAA 60.432 47.826 0.00 0.00 0.00 2.01
30 31 3.804873 GCCTCTAAGCTTCATCCGTAAAG 59.195 47.826 0.00 0.00 0.00 1.85
31 32 3.804873 CCTCTAAGCTTCATCCGTAAAGC 59.195 47.826 0.00 0.00 46.52 3.51
34 35 1.352056 GCTTCATCCGTAAAGCGCC 59.648 57.895 2.29 0.00 38.60 6.53
35 36 1.366111 GCTTCATCCGTAAAGCGCCA 61.366 55.000 2.29 0.00 38.60 5.69
37 38 1.261619 CTTCATCCGTAAAGCGCCATC 59.738 52.381 2.29 0.00 39.71 3.51
38 39 0.464036 TCATCCGTAAAGCGCCATCT 59.536 50.000 2.29 0.00 39.71 2.90
40 41 1.261619 CATCCGTAAAGCGCCATCTTC 59.738 52.381 2.29 0.00 39.71 2.87
41 42 0.461339 TCCGTAAAGCGCCATCTTCC 60.461 55.000 2.29 0.00 39.71 3.46
42 43 0.742990 CCGTAAAGCGCCATCTTCCA 60.743 55.000 2.29 0.00 39.71 3.53
43 44 0.652592 CGTAAAGCGCCATCTTCCAG 59.347 55.000 2.29 0.00 0.00 3.86
44 45 1.739035 CGTAAAGCGCCATCTTCCAGA 60.739 52.381 2.29 0.00 0.00 3.86
45 46 2.565841 GTAAAGCGCCATCTTCCAGAT 58.434 47.619 2.29 0.00 34.74 2.90
47 48 2.134789 AAGCGCCATCTTCCAGATTT 57.865 45.000 2.29 0.00 31.32 2.17
49 50 0.665298 GCGCCATCTTCCAGATTTCC 59.335 55.000 0.00 0.00 31.32 3.13
51 52 2.648059 CGCCATCTTCCAGATTTCCTT 58.352 47.619 0.00 0.00 31.32 3.36
52 53 2.357009 CGCCATCTTCCAGATTTCCTTG 59.643 50.000 0.00 0.00 31.32 3.61
53 54 2.692041 GCCATCTTCCAGATTTCCTTGG 59.308 50.000 0.00 0.00 31.32 3.61
54 55 3.294214 CCATCTTCCAGATTTCCTTGGG 58.706 50.000 0.00 0.00 31.32 4.12
56 57 1.995542 TCTTCCAGATTTCCTTGGGCT 59.004 47.619 0.00 0.00 0.00 5.19
57 58 2.379907 TCTTCCAGATTTCCTTGGGCTT 59.620 45.455 0.00 0.00 0.00 4.35
58 59 2.514458 TCCAGATTTCCTTGGGCTTC 57.486 50.000 0.00 0.00 0.00 3.86
59 60 1.710244 TCCAGATTTCCTTGGGCTTCA 59.290 47.619 0.00 0.00 0.00 3.02
60 61 2.097825 CCAGATTTCCTTGGGCTTCAG 58.902 52.381 0.00 0.00 0.00 3.02
61 62 2.556114 CCAGATTTCCTTGGGCTTCAGT 60.556 50.000 0.00 0.00 0.00 3.41
62 63 3.308402 CCAGATTTCCTTGGGCTTCAGTA 60.308 47.826 0.00 0.00 0.00 2.74
64 65 5.397899 CCAGATTTCCTTGGGCTTCAGTATA 60.398 44.000 0.00 0.00 0.00 1.47
65 66 6.122277 CAGATTTCCTTGGGCTTCAGTATAA 58.878 40.000 0.00 0.00 0.00 0.98
66 67 6.038714 CAGATTTCCTTGGGCTTCAGTATAAC 59.961 42.308 0.00 0.00 0.00 1.89
67 68 5.514500 TTTCCTTGGGCTTCAGTATAACT 57.486 39.130 0.00 0.00 0.00 2.24
80 81 4.467198 AGTATAACTGAAGGTGAACCGG 57.533 45.455 0.00 0.00 42.08 5.28
81 82 2.109425 ATAACTGAAGGTGAACCGGC 57.891 50.000 0.00 0.00 42.08 6.13
82 83 0.035739 TAACTGAAGGTGAACCGGCC 59.964 55.000 0.00 0.00 42.08 6.13
83 84 2.359975 CTGAAGGTGAACCGGCCC 60.360 66.667 0.00 0.00 42.08 5.80
84 85 3.920093 CTGAAGGTGAACCGGCCCC 62.920 68.421 0.00 0.00 42.08 5.80
85 86 3.647771 GAAGGTGAACCGGCCCCT 61.648 66.667 0.00 0.00 42.08 4.79
86 87 3.623703 GAAGGTGAACCGGCCCCTC 62.624 68.421 0.00 0.00 42.08 4.30
89 90 4.410400 GTGAACCGGCCCCTCCTG 62.410 72.222 0.00 0.00 0.00 3.86
100 101 2.271173 CCTCCTGGGCGGTTTACC 59.729 66.667 0.00 0.00 0.00 2.85
107 108 3.164026 GGGCGGTTTACCCTTAGTG 57.836 57.895 0.00 0.00 44.68 2.74
108 109 0.393402 GGGCGGTTTACCCTTAGTGG 60.393 60.000 0.00 0.00 44.68 4.00
109 110 0.325933 GGCGGTTTACCCTTAGTGGT 59.674 55.000 0.00 0.00 42.62 4.16
110 111 1.271543 GGCGGTTTACCCTTAGTGGTT 60.272 52.381 0.00 0.00 39.91 3.67
111 112 2.027285 GGCGGTTTACCCTTAGTGGTTA 60.027 50.000 0.00 0.00 39.91 2.85
112 113 3.370846 GGCGGTTTACCCTTAGTGGTTAT 60.371 47.826 0.00 0.00 39.91 1.89
113 114 4.141733 GGCGGTTTACCCTTAGTGGTTATA 60.142 45.833 0.00 0.00 39.91 0.98
114 115 5.455183 GGCGGTTTACCCTTAGTGGTTATAT 60.455 44.000 0.00 0.00 39.91 0.86
115 116 5.698089 GCGGTTTACCCTTAGTGGTTATATC 59.302 44.000 0.00 0.00 39.91 1.63
116 117 6.226052 CGGTTTACCCTTAGTGGTTATATCC 58.774 44.000 0.00 0.00 39.91 2.59
117 118 6.042437 CGGTTTACCCTTAGTGGTTATATCCT 59.958 42.308 1.59 0.00 39.91 3.24
118 119 7.448420 GGTTTACCCTTAGTGGTTATATCCTC 58.552 42.308 1.59 0.00 39.91 3.71
120 121 8.488668 GTTTACCCTTAGTGGTTATATCCTCAA 58.511 37.037 1.59 0.00 39.91 3.02
121 122 6.496144 ACCCTTAGTGGTTATATCCTCAAC 57.504 41.667 1.59 0.00 33.91 3.18
122 123 5.968167 ACCCTTAGTGGTTATATCCTCAACA 59.032 40.000 1.59 0.00 33.91 3.33
123 124 6.099845 ACCCTTAGTGGTTATATCCTCAACAG 59.900 42.308 1.59 0.00 33.91 3.16
124 125 6.099845 CCCTTAGTGGTTATATCCTCAACAGT 59.900 42.308 1.59 0.00 0.00 3.55
130 131 4.547532 GTTATATCCTCAACAGTCGCGAT 58.452 43.478 14.06 0.00 0.00 4.58
158 159 2.815589 GCAAACTGGGATGGCCTATAGG 60.816 54.545 15.01 15.01 38.53 2.57
307 313 4.353437 AACGAGTGGGTCCGCGTC 62.353 66.667 4.92 0.00 35.74 5.19
358 370 1.423845 CGCGTACCTCCAACAATGC 59.576 57.895 0.00 0.00 0.00 3.56
405 418 1.663388 CAACGGCGAGCGGCATATA 60.663 57.895 16.62 0.00 46.16 0.86
411 424 0.452184 GCGAGCGGCATATAGAGCTA 59.548 55.000 1.45 0.00 40.39 3.32
446 483 3.213402 GGAGACGGAGGAGGAGCG 61.213 72.222 0.00 0.00 0.00 5.03
447 484 3.894947 GAGACGGAGGAGGAGCGC 61.895 72.222 0.00 0.00 0.00 5.92
449 486 3.453679 GACGGAGGAGGAGCGCTT 61.454 66.667 13.26 0.00 0.00 4.68
450 487 3.708220 GACGGAGGAGGAGCGCTTG 62.708 68.421 13.26 0.00 0.00 4.01
451 488 4.521062 CGGAGGAGGAGCGCTTGG 62.521 72.222 13.26 0.00 0.00 3.61
452 489 3.077556 GGAGGAGGAGCGCTTGGA 61.078 66.667 13.26 0.00 0.00 3.53
453 490 2.498726 GAGGAGGAGCGCTTGGAG 59.501 66.667 13.26 0.00 0.00 3.86
454 491 2.038007 AGGAGGAGCGCTTGGAGA 59.962 61.111 13.26 0.00 0.00 3.71
455 492 2.015227 GAGGAGGAGCGCTTGGAGAG 62.015 65.000 13.26 0.00 0.00 3.20
456 493 2.498726 GAGGAGCGCTTGGAGAGG 59.501 66.667 13.26 0.00 0.00 3.69
458 495 3.077556 GGAGCGCTTGGAGAGGGA 61.078 66.667 13.26 0.00 40.59 4.20
459 496 2.498726 GAGCGCTTGGAGAGGGAG 59.501 66.667 13.26 0.00 40.59 4.30
460 497 3.080121 AGCGCTTGGAGAGGGAGG 61.080 66.667 2.64 0.00 40.59 4.30
463 500 2.430610 CGCTTGGAGAGGGAGGAGG 61.431 68.421 0.00 0.00 40.59 4.30
464 501 1.002274 GCTTGGAGAGGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
465 502 1.048160 GCTTGGAGAGGGAGGAGGAG 61.048 65.000 0.00 0.00 0.00 3.69
466 503 1.002274 TTGGAGAGGGAGGAGGAGC 59.998 63.158 0.00 0.00 0.00 4.70
510 547 2.819595 CCGGCAGGACAACCATCG 60.820 66.667 0.00 0.00 41.02 3.84
518 555 1.677552 GACAACCATCGGGGACAGT 59.322 57.895 0.84 0.00 41.15 3.55
522 559 4.530857 CCATCGGGGACAGTCGGC 62.531 72.222 0.00 0.00 40.01 5.54
595 632 0.320421 CACCGGTGTTCATCGACCTT 60.320 55.000 26.95 0.00 0.00 3.50
624 661 0.731994 GGGAAGAGGACGACTACGAC 59.268 60.000 0.00 0.00 42.66 4.34
634 671 3.178569 GACTACGACGCCGCCTAGG 62.179 68.421 3.67 3.67 44.97 3.02
718 763 4.607557 CGCGGTTGATCGTCCATTTAATAC 60.608 45.833 0.00 0.00 0.00 1.89
727 772 9.476202 TGATCGTCCATTTAATACTCAGTTATG 57.524 33.333 0.00 0.00 0.00 1.90
794 840 4.406943 GACACGAGAAAAATGAATCTGCC 58.593 43.478 0.00 0.00 0.00 4.85
798 844 4.701651 ACGAGAAAAATGAATCTGCCATCA 59.298 37.500 0.00 0.00 0.00 3.07
800 846 5.913514 CGAGAAAAATGAATCTGCCATCATC 59.086 40.000 0.00 0.00 35.29 2.92
803 849 4.825546 AAATGAATCTGCCATCATCGAC 57.174 40.909 0.00 0.00 35.29 4.20
805 851 1.202687 TGAATCTGCCATCATCGACCC 60.203 52.381 0.00 0.00 0.00 4.46
806 852 0.839277 AATCTGCCATCATCGACCCA 59.161 50.000 0.00 0.00 0.00 4.51
807 853 0.839277 ATCTGCCATCATCGACCCAA 59.161 50.000 0.00 0.00 0.00 4.12
808 854 0.617935 TCTGCCATCATCGACCCAAA 59.382 50.000 0.00 0.00 0.00 3.28
809 855 0.734889 CTGCCATCATCGACCCAAAC 59.265 55.000 0.00 0.00 0.00 2.93
810 856 0.037447 TGCCATCATCGACCCAAACA 59.963 50.000 0.00 0.00 0.00 2.83
811 857 1.173043 GCCATCATCGACCCAAACAA 58.827 50.000 0.00 0.00 0.00 2.83
828 874 3.655481 AAAAAGAGGACGCGCCAG 58.345 55.556 19.30 0.00 40.02 4.85
830 876 1.228657 AAAAAGAGGACGCGCCAGTC 61.229 55.000 19.30 4.03 40.02 3.51
842 888 4.436998 CCAGTCCGCTCGGGTGAC 62.437 72.222 8.59 0.00 37.00 3.67
936 982 1.668294 CTGCTCCAACAGACGGTCT 59.332 57.895 4.45 4.45 40.25 3.85
981 1027 4.116961 CGGCCTTCTCGTGATGTAAAATA 58.883 43.478 0.00 0.00 0.00 1.40
1005 1051 5.007626 ACAACACTTCGCGATGCAAATATAT 59.992 36.000 20.65 0.00 0.00 0.86
1072 1118 1.247567 CAACCGCCACTTCATTTCCT 58.752 50.000 0.00 0.00 0.00 3.36
1078 1124 2.247358 GCCACTTCATTTCCTTTCCCA 58.753 47.619 0.00 0.00 0.00 4.37
1689 2072 2.024590 GCTACCATCCCGCCGTAACT 62.025 60.000 0.00 0.00 0.00 2.24
1791 2205 1.985116 GAAGGGACGAGGAGGCAGT 60.985 63.158 0.00 0.00 0.00 4.40
2041 2475 7.817831 CGAAATGTCGCAAAGGTATAATTTTC 58.182 34.615 0.00 0.00 41.08 2.29
2108 2554 6.152379 TGATTGTTTGTGCGTGCAATTATAA 58.848 32.000 0.00 0.00 32.47 0.98
2137 2583 1.154150 GAAGCTTCCATGCACACGC 60.154 57.895 15.97 0.00 39.24 5.34
2218 4510 0.467290 AACCGTGGCTGAACAATGGT 60.467 50.000 0.00 0.00 34.07 3.55
2258 4550 6.106003 GGCCGTTTTCATCTTTATTTTGGAT 58.894 36.000 0.00 0.00 0.00 3.41
2259 4551 6.593770 GGCCGTTTTCATCTTTATTTTGGATT 59.406 34.615 0.00 0.00 0.00 3.01
2294 4586 7.222872 AGTTGCAAATTTGGACCATCATTTTA 58.777 30.769 19.47 0.00 0.00 1.52
2295 4587 7.718753 AGTTGCAAATTTGGACCATCATTTTAA 59.281 29.630 19.47 6.01 0.00 1.52
2297 4589 8.632906 TGCAAATTTGGACCATCATTTTAAAT 57.367 26.923 19.47 0.00 0.00 1.40
2402 4694 7.893302 ACCACCAAATTTTAGACCATCTATTGA 59.107 33.333 0.00 0.00 0.00 2.57
2403 4695 8.748412 CCACCAAATTTTAGACCATCTATTGAA 58.252 33.333 0.00 0.00 0.00 2.69
2414 4706 7.938715 AGACCATCTATTGAAATTGAAGATGC 58.061 34.615 5.33 0.00 41.33 3.91
2415 4707 7.778853 AGACCATCTATTGAAATTGAAGATGCT 59.221 33.333 5.33 0.00 41.33 3.79
2416 4708 7.938715 ACCATCTATTGAAATTGAAGATGCTC 58.061 34.615 5.33 0.00 41.33 4.26
2417 4709 7.778853 ACCATCTATTGAAATTGAAGATGCTCT 59.221 33.333 5.33 0.00 41.33 4.09
2418 4710 9.281371 CCATCTATTGAAATTGAAGATGCTCTA 57.719 33.333 5.33 0.00 41.33 2.43
2421 4713 9.113838 TCTATTGAAATTGAAGATGCTCTAACC 57.886 33.333 0.00 0.00 0.00 2.85
2422 4714 7.707624 ATTGAAATTGAAGATGCTCTAACCA 57.292 32.000 0.00 0.00 0.00 3.67
2423 4715 7.523293 TTGAAATTGAAGATGCTCTAACCAA 57.477 32.000 0.00 0.00 0.00 3.67
2424 4716 7.523293 TGAAATTGAAGATGCTCTAACCAAA 57.477 32.000 0.00 0.00 0.00 3.28
2425 4717 7.950512 TGAAATTGAAGATGCTCTAACCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
2426 4718 8.084073 TGAAATTGAAGATGCTCTAACCAAAAG 58.916 33.333 0.00 0.00 0.00 2.27
2427 4719 5.376854 TTGAAGATGCTCTAACCAAAAGC 57.623 39.130 0.00 0.00 36.56 3.51
2428 4720 3.436704 TGAAGATGCTCTAACCAAAAGCG 59.563 43.478 0.00 0.00 38.90 4.68
2429 4721 2.359900 AGATGCTCTAACCAAAAGCGG 58.640 47.619 0.00 0.00 38.90 5.52
2430 4722 2.027192 AGATGCTCTAACCAAAAGCGGA 60.027 45.455 0.00 0.00 38.90 5.54
2431 4723 1.808411 TGCTCTAACCAAAAGCGGAG 58.192 50.000 0.00 0.00 38.90 4.63
2650 4998 4.424711 GCAGGCCACCGGGAATGA 62.425 66.667 6.32 0.00 35.59 2.57
2712 5060 3.758088 CTCGGCGGACCAGATCGTG 62.758 68.421 7.21 0.00 34.57 4.35
2775 5128 3.527641 CTCGAGGTGAGCCCCTAC 58.472 66.667 3.91 0.00 38.03 3.18
2886 5293 2.242196 GAGGAAAGGGGATGGATTGACA 59.758 50.000 0.00 0.00 0.00 3.58
2903 5310 8.156820 TGGATTGACATACTAGGGTATTCATTG 58.843 37.037 0.00 0.00 36.60 2.82
3065 5523 2.750948 TGTCTGACGCTAAGTGAAACC 58.249 47.619 2.98 0.00 37.80 3.27
3145 5603 7.199765 AGGGCATTGGATATCCTATACTAACT 58.800 38.462 22.35 11.49 36.82 2.24
3207 5665 1.005215 CTGCCTGGGAACTTTGAGGAT 59.995 52.381 0.00 0.00 0.00 3.24
3319 5914 0.933796 GCCTCAGACTTAGCGCATTC 59.066 55.000 11.47 0.00 0.00 2.67
3345 5940 8.237267 CAGGTGAATTTTACTAAAGTGGCTTAG 58.763 37.037 0.00 0.00 35.40 2.18
3370 5965 2.736670 AAGGGATTGGCTGGATGTAC 57.263 50.000 0.00 0.00 0.00 2.90
3406 6002 3.433306 AATTTGGGTCAGTCGATTCCA 57.567 42.857 0.00 0.00 0.00 3.53
3413 6009 2.093973 GGTCAGTCGATTCCATGTGAGT 60.094 50.000 0.00 0.00 0.00 3.41
3456 6052 2.419851 CCAGATCAGCTTCTTCACCTCC 60.420 54.545 0.00 0.00 0.00 4.30
3466 6062 2.043992 TCTTCACCTCCGAAACCTTCA 58.956 47.619 0.00 0.00 0.00 3.02
3496 6092 3.757493 TCGTCTTCAACCTCTAACCTCTC 59.243 47.826 0.00 0.00 0.00 3.20
3509 6105 6.139679 TCTAACCTCTCACCCAAATTTGAT 57.860 37.500 19.86 4.46 0.00 2.57
3532 6128 6.870971 TTTTTCAGGCGACTTACAAGTAAT 57.129 33.333 0.00 0.00 39.88 1.89
3535 6131 6.956299 TTCAGGCGACTTACAAGTAATTAC 57.044 37.500 7.57 7.57 39.88 1.89
3669 6267 2.548464 AGAGGAGAGAAGCAGATGGT 57.452 50.000 0.00 0.00 0.00 3.55
3686 6284 6.125029 CAGATGGTTGTATTTGAGAGGGATT 58.875 40.000 0.00 0.00 0.00 3.01
3726 6324 7.341445 TGTTATTTTGGTATAAGGGTGATGC 57.659 36.000 0.00 0.00 0.00 3.91
3777 6375 4.458989 TGGGCTGATAAGAAACATGTCAAC 59.541 41.667 0.00 0.00 0.00 3.18
3778 6376 4.458989 GGGCTGATAAGAAACATGTCAACA 59.541 41.667 0.00 0.00 0.00 3.33
3801 6400 8.426489 AACAGTCAATGTACTGGTAGTTTTCTA 58.574 33.333 14.14 0.00 45.55 2.10
4150 6757 4.263506 CCTCCAGTTATTTATAGCAGGGGG 60.264 50.000 0.64 0.64 35.17 5.40
4316 9313 4.510167 ATCTGCCATTGTTAGCTTACCT 57.490 40.909 0.00 0.00 0.00 3.08
4491 9495 4.372656 GCATTAATGCGTCTCTCCTAAGT 58.627 43.478 23.77 0.00 44.67 2.24
4582 9614 7.392494 TTGTGTTCACTGTGTAATAACCAAA 57.608 32.000 7.79 0.32 0.00 3.28
4709 9741 2.596904 TACAGGCGGCTGAAGAATAC 57.403 50.000 41.51 0.00 0.00 1.89
4805 9843 3.402628 TGCAAAGGTCTGGAACTCTAC 57.597 47.619 0.00 0.00 0.00 2.59
4882 10179 2.223745 GACTTTGTACCAAAAGGCGGA 58.776 47.619 9.70 0.00 40.74 5.54
5276 10629 6.097981 TGAAGCTCTGAGTATGATTGATGACT 59.902 38.462 6.53 0.00 0.00 3.41
5281 10634 7.312657 TCTGAGTATGATTGATGACTTTTGC 57.687 36.000 0.00 0.00 0.00 3.68
5337 10690 8.893219 ATCGAGTAATGAACATTATGACATGT 57.107 30.769 0.00 0.00 39.17 3.21
5472 10836 5.220681 GCCGAGTTCTATTTGGACAAATCTC 60.221 44.000 13.07 12.01 40.99 2.75
5487 10851 0.106708 ATCTCATGTTACCGCGGCAT 59.893 50.000 28.58 18.33 0.00 4.40
5666 11030 1.972872 CGGAAGCTTATGAGGGCATT 58.027 50.000 0.00 0.00 35.94 3.56
5828 11192 0.606604 GTTAGAAGTCGAGGCCACCA 59.393 55.000 5.01 0.00 0.00 4.17
5831 11195 1.794714 AGAAGTCGAGGCCACCATAT 58.205 50.000 5.01 0.00 0.00 1.78
5879 11243 6.417327 CAGAATTATGACTTGTCGAAGATGC 58.583 40.000 0.00 0.00 40.67 3.91
5926 11290 7.726738 GGGAGGAAGTATCTACTCTACAAGAAT 59.273 40.741 0.00 0.00 34.99 2.40
5949 11313 8.647256 AATTTGATGGATCTTTATCATCCCTC 57.353 34.615 6.48 0.00 39.43 4.30
5973 11337 5.057149 GCTGTCACCGGATTTCTGTATTAT 58.943 41.667 9.46 0.00 0.00 1.28
5989 11353 8.135382 TCTGTATTATCTACATTTCTAGGGCC 57.865 38.462 0.00 0.00 0.00 5.80
6277 11641 4.025396 GTGTAACATATAGCTGTGCTGCTG 60.025 45.833 12.75 1.24 39.52 4.41
6278 11642 1.590932 ACATATAGCTGTGCTGCTGC 58.409 50.000 8.89 8.89 43.87 5.25
6279 11643 0.873054 CATATAGCTGTGCTGCTGCC 59.127 55.000 13.47 5.20 43.87 4.85
6280 11644 0.763652 ATATAGCTGTGCTGCTGCCT 59.236 50.000 13.47 5.29 43.87 4.75
6281 11645 0.179065 TATAGCTGTGCTGCTGCCTG 60.179 55.000 13.47 9.32 43.87 4.85
6300 11664 5.302059 TGCCTGCTAGTACGATTCTCTAATT 59.698 40.000 0.00 0.00 0.00 1.40
6343 11707 2.996168 AAGAGGCGCAACGAAGCAGT 62.996 55.000 10.83 0.00 34.54 4.40
6344 11708 3.300667 GAGGCGCAACGAAGCAGTG 62.301 63.158 10.83 0.00 34.54 3.66
6346 11710 2.171940 GCGCAACGAAGCAGTGAG 59.828 61.111 0.30 0.00 0.00 3.51
6353 11717 3.548587 CAACGAAGCAGTGAGTGATTTG 58.451 45.455 4.05 4.05 41.16 2.32
6359 11723 5.445142 CGAAGCAGTGAGTGATTTGTGATAC 60.445 44.000 0.00 0.00 33.94 2.24
6360 11724 5.157940 AGCAGTGAGTGATTTGTGATACT 57.842 39.130 0.00 0.00 0.00 2.12
6361 11725 4.934001 AGCAGTGAGTGATTTGTGATACTG 59.066 41.667 0.00 0.00 37.82 2.74
6362 11726 4.692625 GCAGTGAGTGATTTGTGATACTGT 59.307 41.667 0.00 0.00 37.28 3.55
6363 11727 5.869344 GCAGTGAGTGATTTGTGATACTGTA 59.131 40.000 0.00 0.00 37.28 2.74
6394 11758 0.883833 ACACCGGTGGTACTAGAACG 59.116 55.000 36.47 9.09 32.11 3.95
6406 11770 3.581024 ACTAGAACGTGGCGTAAATGA 57.419 42.857 0.00 0.00 39.99 2.57
6539 12157 3.047877 GGGTCAAACGGAGTGCGG 61.048 66.667 9.43 0.00 45.00 5.69
6576 12194 6.477688 CCCAGCAAATAACAATTGATGTCATC 59.522 38.462 13.59 5.83 42.99 2.92
6663 12281 6.313744 ACACAGGGAACGAAAAATAAGAAG 57.686 37.500 0.00 0.00 0.00 2.85
6665 12283 6.017357 ACACAGGGAACGAAAAATAAGAAGTC 60.017 38.462 0.00 0.00 0.00 3.01
6701 12319 1.310216 AAAAAGATACCGCCGTGGGC 61.310 55.000 2.35 0.00 46.75 5.36
6730 12348 0.392998 AGCGGCCTGACAATTACCAG 60.393 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.179059 GAAGCTTAGAGGCCCAGAGC 60.179 60.000 0.00 4.30 42.60 4.09
2 3 1.198713 TGAAGCTTAGAGGCCCAGAG 58.801 55.000 0.00 0.00 0.00 3.35
4 5 1.202746 GGATGAAGCTTAGAGGCCCAG 60.203 57.143 0.00 0.00 0.00 4.45
6 7 0.250081 CGGATGAAGCTTAGAGGCCC 60.250 60.000 0.00 0.00 0.00 5.80
7 8 0.466124 ACGGATGAAGCTTAGAGGCC 59.534 55.000 0.00 0.00 0.00 5.19
8 9 3.454371 TTACGGATGAAGCTTAGAGGC 57.546 47.619 0.00 0.00 0.00 4.70
9 10 3.804873 GCTTTACGGATGAAGCTTAGAGG 59.195 47.826 0.00 0.00 42.66 3.69
11 12 3.444916 CGCTTTACGGATGAAGCTTAGA 58.555 45.455 0.00 0.00 43.53 2.10
12 13 2.033662 GCGCTTTACGGATGAAGCTTAG 60.034 50.000 0.00 0.00 43.53 2.18
13 14 1.931172 GCGCTTTACGGATGAAGCTTA 59.069 47.619 0.00 0.00 43.53 3.09
14 15 0.727398 GCGCTTTACGGATGAAGCTT 59.273 50.000 0.00 0.00 43.53 3.74
15 16 1.090052 GGCGCTTTACGGATGAAGCT 61.090 55.000 7.64 0.00 43.53 3.74
16 17 1.352056 GGCGCTTTACGGATGAAGC 59.648 57.895 7.64 0.00 42.56 3.86
18 19 1.134521 AGATGGCGCTTTACGGATGAA 60.135 47.619 7.64 0.00 43.93 2.57
20 21 1.261619 GAAGATGGCGCTTTACGGATG 59.738 52.381 7.64 0.00 43.93 3.51
21 22 1.583054 GAAGATGGCGCTTTACGGAT 58.417 50.000 7.64 0.00 43.93 4.18
22 23 0.461339 GGAAGATGGCGCTTTACGGA 60.461 55.000 7.64 0.00 43.93 4.69
23 24 0.742990 TGGAAGATGGCGCTTTACGG 60.743 55.000 7.64 0.00 43.93 4.02
24 25 0.652592 CTGGAAGATGGCGCTTTACG 59.347 55.000 7.64 0.00 40.64 3.18
25 26 2.024176 TCTGGAAGATGGCGCTTTAC 57.976 50.000 7.64 0.00 38.67 2.01
37 38 2.521547 AGCCCAAGGAAATCTGGAAG 57.478 50.000 0.00 0.00 0.00 3.46
38 39 2.109834 TGAAGCCCAAGGAAATCTGGAA 59.890 45.455 0.00 0.00 0.00 3.53
40 41 2.097825 CTGAAGCCCAAGGAAATCTGG 58.902 52.381 0.00 0.00 0.00 3.86
41 42 2.800250 ACTGAAGCCCAAGGAAATCTG 58.200 47.619 0.00 0.00 0.00 2.90
42 43 4.870021 ATACTGAAGCCCAAGGAAATCT 57.130 40.909 0.00 0.00 0.00 2.40
43 44 6.122964 AGTTATACTGAAGCCCAAGGAAATC 58.877 40.000 0.00 0.00 0.00 2.17
44 45 6.079712 AGTTATACTGAAGCCCAAGGAAAT 57.920 37.500 0.00 0.00 0.00 2.17
45 46 5.514500 AGTTATACTGAAGCCCAAGGAAA 57.486 39.130 0.00 0.00 0.00 3.13
59 60 3.369157 GCCGGTTCACCTTCAGTTATACT 60.369 47.826 1.90 0.00 0.00 2.12
60 61 2.934553 GCCGGTTCACCTTCAGTTATAC 59.065 50.000 1.90 0.00 0.00 1.47
61 62 2.093341 GGCCGGTTCACCTTCAGTTATA 60.093 50.000 1.90 0.00 0.00 0.98
62 63 1.339727 GGCCGGTTCACCTTCAGTTAT 60.340 52.381 1.90 0.00 0.00 1.89
64 65 1.228154 GGCCGGTTCACCTTCAGTT 60.228 57.895 1.90 0.00 0.00 3.16
65 66 2.430367 GGCCGGTTCACCTTCAGT 59.570 61.111 1.90 0.00 0.00 3.41
66 67 2.359975 GGGCCGGTTCACCTTCAG 60.360 66.667 1.90 0.00 0.00 3.02
67 68 3.961414 GGGGCCGGTTCACCTTCA 61.961 66.667 1.90 0.00 0.00 3.02
68 69 3.623703 GAGGGGCCGGTTCACCTTC 62.624 68.421 4.17 3.94 32.42 3.46
69 70 3.647771 GAGGGGCCGGTTCACCTT 61.648 66.667 4.17 0.00 32.42 3.50
83 84 2.271173 GGTAAACCGCCCAGGAGG 59.729 66.667 4.73 4.73 45.00 4.30
84 85 2.271173 GGGTAAACCGCCCAGGAG 59.729 66.667 0.00 0.00 45.40 3.69
89 90 0.393402 CCACTAAGGGTAAACCGCCC 60.393 60.000 0.00 0.00 46.96 6.13
90 91 0.325933 ACCACTAAGGGTAAACCGCC 59.674 55.000 0.00 0.00 46.96 6.13
91 92 2.189594 AACCACTAAGGGTAAACCGC 57.810 50.000 0.00 0.00 46.96 5.68
92 93 6.042437 AGGATATAACCACTAAGGGTAAACCG 59.958 42.308 1.42 0.00 44.50 4.44
93 94 7.071572 TGAGGATATAACCACTAAGGGTAAACC 59.928 40.741 1.42 0.00 44.50 3.27
94 95 8.026396 TGAGGATATAACCACTAAGGGTAAAC 57.974 38.462 1.42 0.00 44.50 2.01
95 96 8.488668 GTTGAGGATATAACCACTAAGGGTAAA 58.511 37.037 1.42 0.00 44.50 2.01
96 97 7.624478 TGTTGAGGATATAACCACTAAGGGTAA 59.376 37.037 1.42 0.00 44.50 2.85
99 100 6.099845 ACTGTTGAGGATATAACCACTAAGGG 59.900 42.308 1.42 0.00 43.89 3.95
100 101 7.125792 ACTGTTGAGGATATAACCACTAAGG 57.874 40.000 1.42 0.00 45.67 2.69
102 103 6.682113 GCGACTGTTGAGGATATAACCACTAA 60.682 42.308 1.42 0.00 0.00 2.24
103 104 5.221185 GCGACTGTTGAGGATATAACCACTA 60.221 44.000 1.42 0.00 0.00 2.74
105 106 3.802685 GCGACTGTTGAGGATATAACCAC 59.197 47.826 1.42 0.00 0.00 4.16
106 107 3.490249 CGCGACTGTTGAGGATATAACCA 60.490 47.826 0.00 0.00 0.00 3.67
107 108 3.050619 CGCGACTGTTGAGGATATAACC 58.949 50.000 0.00 0.00 0.00 2.85
108 109 3.961182 TCGCGACTGTTGAGGATATAAC 58.039 45.455 3.71 0.00 0.00 1.89
109 110 4.277423 TCATCGCGACTGTTGAGGATATAA 59.723 41.667 12.93 0.00 0.00 0.98
110 111 3.818773 TCATCGCGACTGTTGAGGATATA 59.181 43.478 12.93 0.00 0.00 0.86
111 112 2.623416 TCATCGCGACTGTTGAGGATAT 59.377 45.455 12.93 0.00 0.00 1.63
112 113 2.021457 TCATCGCGACTGTTGAGGATA 58.979 47.619 12.93 0.00 0.00 2.59
113 114 0.817654 TCATCGCGACTGTTGAGGAT 59.182 50.000 12.93 0.00 0.00 3.24
114 115 0.171231 CTCATCGCGACTGTTGAGGA 59.829 55.000 23.48 3.11 33.54 3.71
115 116 0.803768 CCTCATCGCGACTGTTGAGG 60.804 60.000 31.27 31.27 46.66 3.86
116 117 0.171231 TCCTCATCGCGACTGTTGAG 59.829 55.000 24.01 24.01 36.26 3.02
117 118 0.109272 GTCCTCATCGCGACTGTTGA 60.109 55.000 12.93 10.84 0.00 3.18
118 119 1.406219 CGTCCTCATCGCGACTGTTG 61.406 60.000 12.93 5.91 0.00 3.33
120 121 2.485582 CGTCCTCATCGCGACTGT 59.514 61.111 12.93 0.00 0.00 3.55
121 122 2.951745 GCGTCCTCATCGCGACTG 60.952 66.667 12.93 11.63 43.94 3.51
130 131 0.321564 CATCCCAGTTTGCGTCCTCA 60.322 55.000 0.00 0.00 0.00 3.86
139 140 2.982488 CTCCTATAGGCCATCCCAGTTT 59.018 50.000 14.50 0.00 35.39 2.66
158 159 2.187163 GGACAGCGTAAGGGCCTC 59.813 66.667 6.46 0.00 38.28 4.70
272 278 4.767255 GAGCTGGCCGGTCCACTG 62.767 72.222 14.55 6.65 40.72 3.66
402 415 2.554462 CAAGTGGCGCTCTAGCTCTATA 59.446 50.000 7.64 0.00 39.32 1.31
405 418 1.515020 CAAGTGGCGCTCTAGCTCT 59.485 57.895 7.64 0.00 39.32 4.09
428 441 2.277404 GCTCCTCCTCCGTCTCCT 59.723 66.667 0.00 0.00 0.00 3.69
446 483 1.002274 TCCTCCTCCCTCTCCAAGC 59.998 63.158 0.00 0.00 0.00 4.01
447 484 1.048160 GCTCCTCCTCCCTCTCCAAG 61.048 65.000 0.00 0.00 0.00 3.61
449 486 2.693017 GCTCCTCCTCCCTCTCCA 59.307 66.667 0.00 0.00 0.00 3.86
450 487 2.520741 CGCTCCTCCTCCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
451 488 3.223589 GCGCTCCTCCTCCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
537 574 2.430921 CACTCTCCCACGTCGCAC 60.431 66.667 0.00 0.00 0.00 5.34
576 613 0.320421 AAGGTCGATGAACACCGGTG 60.320 55.000 32.83 32.83 37.79 4.94
577 614 1.067354 GTAAGGTCGATGAACACCGGT 60.067 52.381 0.00 0.00 37.79 5.28
582 619 0.108520 GGCGGTAAGGTCGATGAACA 60.109 55.000 0.00 0.00 0.00 3.18
615 652 3.503336 CTAGGCGGCGTCGTAGTCG 62.503 68.421 12.58 2.85 42.81 4.18
634 671 3.446570 GCATGGTCAGCACTGCCC 61.447 66.667 0.00 0.21 0.00 5.36
676 721 3.595173 GCGGGCCAAAGTTCATTTAAAT 58.405 40.909 4.39 0.00 0.00 1.40
679 724 0.523966 CGCGGGCCAAAGTTCATTTA 59.476 50.000 4.39 0.00 0.00 1.40
682 727 3.061848 CCGCGGGCCAAAGTTCAT 61.062 61.111 20.10 0.00 0.00 2.57
684 729 3.292159 AACCGCGGGCCAAAGTTC 61.292 61.111 31.76 0.00 0.00 3.01
771 817 4.406943 GCAGATTCATTTTTCTCGTGTCC 58.593 43.478 0.00 0.00 0.00 4.02
772 818 4.083324 TGGCAGATTCATTTTTCTCGTGTC 60.083 41.667 0.00 0.00 0.00 3.67
811 857 1.227853 ACTGGCGCGTCCTCTTTTT 60.228 52.632 8.89 0.00 35.26 1.94
825 871 4.436998 GTCACCCGAGCGGACTGG 62.437 72.222 11.05 0.00 37.50 4.00
836 882 2.507407 TGCTCTTAATTGGGTCACCC 57.493 50.000 5.63 5.63 45.71 4.61
838 884 3.879892 GGAGATGCTCTTAATTGGGTCAC 59.120 47.826 0.00 0.00 0.00 3.67
839 885 3.523157 TGGAGATGCTCTTAATTGGGTCA 59.477 43.478 0.00 0.00 0.00 4.02
842 888 6.429385 GTCTATTGGAGATGCTCTTAATTGGG 59.571 42.308 0.00 0.00 36.29 4.12
843 889 6.146837 CGTCTATTGGAGATGCTCTTAATTGG 59.853 42.308 0.00 0.00 36.29 3.16
844 890 6.146837 CCGTCTATTGGAGATGCTCTTAATTG 59.853 42.308 0.00 0.00 39.57 2.32
846 892 5.305644 ACCGTCTATTGGAGATGCTCTTAAT 59.694 40.000 0.00 0.00 39.57 1.40
981 1027 0.660488 TTTGCATCGCGAAGTGTTGT 59.340 45.000 15.24 0.00 39.62 3.32
1005 1051 2.297315 GGACCAGATGCATCTCGTGATA 59.703 50.000 28.50 0.00 34.22 2.15
1136 1512 3.630148 CGTCGACATCGGCCATGC 61.630 66.667 17.16 2.13 41.58 4.06
1791 2205 4.877619 TTGGCCGGCCGTTTGACA 62.878 61.111 39.00 18.71 39.42 3.58
1832 2266 3.223710 TTCACCGGCCGCGTAGAAA 62.224 57.895 22.85 11.19 0.00 2.52
1878 2312 2.094659 CGTCTGCGAATCGTTGCCT 61.095 57.895 4.07 0.00 41.33 4.75
1914 2348 1.303561 GGATGTGTGGCTGCTGGAA 60.304 57.895 0.00 0.00 0.00 3.53
2037 2471 0.934496 CGAGAGCACAACCACGAAAA 59.066 50.000 0.00 0.00 0.00 2.29
2041 2475 0.042188 CAAACGAGAGCACAACCACG 60.042 55.000 0.00 0.00 0.00 4.94
2108 2554 4.202121 GCATGGAAGCTTCATCATCAACAT 60.202 41.667 27.02 15.18 0.00 2.71
2139 2585 5.004448 TGCATCATCATTTGCCACATTTTT 58.996 33.333 0.00 0.00 38.08 1.94
2140 2586 4.393680 GTGCATCATCATTTGCCACATTTT 59.606 37.500 0.00 0.00 38.08 1.82
2195 4487 1.178276 TTGTTCAGCCACGGTTTTGT 58.822 45.000 0.00 0.00 0.00 2.83
2258 4550 9.638239 GTCCAAATTTGCAACTTCAATAGATAA 57.362 29.630 12.92 0.00 0.00 1.75
2259 4551 8.250332 GGTCCAAATTTGCAACTTCAATAGATA 58.750 33.333 12.92 0.00 0.00 1.98
2268 4560 4.686191 TGATGGTCCAAATTTGCAACTT 57.314 36.364 12.92 0.00 0.00 2.66
2294 4586 4.660168 AGCTCAACTCCAACAGATGATTT 58.340 39.130 0.00 0.00 33.66 2.17
2295 4587 4.298103 AGCTCAACTCCAACAGATGATT 57.702 40.909 0.00 0.00 33.66 2.57
2297 4589 3.777106 AAGCTCAACTCCAACAGATGA 57.223 42.857 0.00 0.00 33.11 2.92
2362 4654 1.271163 TGGTGGTCCAAAATCGGAGAC 60.271 52.381 0.00 0.00 39.59 3.36
2389 4681 7.778853 AGCATCTTCAATTTCAATAGATGGTCT 59.221 33.333 8.74 0.00 45.64 3.85
2410 4702 2.352960 CTCCGCTTTTGGTTAGAGCATC 59.647 50.000 0.00 0.00 36.22 3.91
2411 4703 2.359900 CTCCGCTTTTGGTTAGAGCAT 58.640 47.619 0.00 0.00 36.22 3.79
2412 4704 1.808411 CTCCGCTTTTGGTTAGAGCA 58.192 50.000 0.00 0.00 36.22 4.26
2413 4705 0.448197 GCTCCGCTTTTGGTTAGAGC 59.552 55.000 0.00 0.00 39.86 4.09
2414 4706 0.721718 CGCTCCGCTTTTGGTTAGAG 59.278 55.000 0.00 0.00 0.00 2.43
2415 4707 0.034337 ACGCTCCGCTTTTGGTTAGA 59.966 50.000 0.00 0.00 0.00 2.10
2416 4708 0.442699 GACGCTCCGCTTTTGGTTAG 59.557 55.000 0.00 0.00 0.00 2.34
2417 4709 0.952010 GGACGCTCCGCTTTTGGTTA 60.952 55.000 0.00 0.00 0.00 2.85
2418 4710 2.258726 GGACGCTCCGCTTTTGGTT 61.259 57.895 0.00 0.00 0.00 3.67
2419 4711 2.668550 GGACGCTCCGCTTTTGGT 60.669 61.111 0.00 0.00 0.00 3.67
2420 4712 3.431725 GGGACGCTCCGCTTTTGG 61.432 66.667 0.00 0.00 37.43 3.28
2421 4713 1.515521 AAAGGGACGCTCCGCTTTTG 61.516 55.000 10.11 0.00 35.15 2.44
2422 4714 1.228154 AAAGGGACGCTCCGCTTTT 60.228 52.632 10.11 3.31 35.15 2.27
2423 4715 1.966451 CAAAGGGACGCTCCGCTTT 60.966 57.895 10.11 10.11 37.45 3.51
2424 4716 2.358737 CAAAGGGACGCTCCGCTT 60.359 61.111 0.00 0.00 37.43 4.68
2425 4717 4.394712 CCAAAGGGACGCTCCGCT 62.395 66.667 0.00 0.00 37.43 5.52
2436 4728 0.890996 AGCAAGCGAAGACCCAAAGG 60.891 55.000 0.00 0.00 40.04 3.11
2437 4729 0.519077 GAGCAAGCGAAGACCCAAAG 59.481 55.000 0.00 0.00 0.00 2.77
2650 4998 4.241555 GTCCATCTCCGCCGCCAT 62.242 66.667 0.00 0.00 0.00 4.40
2712 5060 3.427598 GAGCTTCCGGACGTAGGCC 62.428 68.421 1.83 0.00 0.00 5.19
2886 5293 8.268878 AGCTCTTTCAATGAATACCCTAGTAT 57.731 34.615 0.00 0.00 41.09 2.12
2903 5310 5.069501 AGAATGCAAAATGGAGCTCTTTC 57.930 39.130 14.64 0.00 0.00 2.62
2906 5313 3.965694 AGAGAATGCAAAATGGAGCTCT 58.034 40.909 14.64 0.00 31.88 4.09
2973 5399 2.662006 TCTTCAGTCGAGAATGCAGG 57.338 50.000 0.00 0.00 0.00 4.85
3207 5665 5.536161 AGAAAGAAAAGGAAGCTGCAACATA 59.464 36.000 1.02 0.00 0.00 2.29
3319 5914 6.575162 AGCCACTTTAGTAAAATTCACCTG 57.425 37.500 0.00 0.00 0.00 4.00
3345 5940 5.140454 ACATCCAGCCAATCCCTTATTTAC 58.860 41.667 0.00 0.00 0.00 2.01
3370 5965 3.364621 CCAAATTTGATTTTCAGGCGACG 59.635 43.478 19.86 0.00 0.00 5.12
3406 6002 0.246360 TTGCATCCGACGACTCACAT 59.754 50.000 0.00 0.00 0.00 3.21
3413 6009 1.143838 CCCATCTTGCATCCGACGA 59.856 57.895 0.00 0.00 0.00 4.20
3416 6012 1.153107 CTGCCCATCTTGCATCCGA 60.153 57.895 0.00 0.00 38.22 4.55
3456 6052 2.800544 ACGATGAACAGTGAAGGTTTCG 59.199 45.455 0.00 0.49 35.64 3.46
3466 6062 3.322254 AGAGGTTGAAGACGATGAACAGT 59.678 43.478 0.00 0.00 0.00 3.55
3496 6092 4.083908 CGCCTGAAAAATCAAATTTGGGTG 60.084 41.667 17.90 10.85 31.77 4.61
3509 6105 6.870971 ATTACTTGTAAGTCGCCTGAAAAA 57.129 33.333 0.00 0.00 40.37 1.94
3669 6267 4.943705 GCTGTCAATCCCTCTCAAATACAA 59.056 41.667 0.00 0.00 0.00 2.41
3686 6284 2.113774 CAACAGGGCTGGCTGTCA 59.886 61.111 0.00 0.00 32.77 3.58
3726 6324 5.957842 TGTGGCCTATCTGTTTTACAAAG 57.042 39.130 3.32 0.00 0.00 2.77
3759 6357 7.800155 TTGACTGTTGACATGTTTCTTATCA 57.200 32.000 0.00 0.00 0.00 2.15
3801 6400 4.918588 ACAGAAAATCCAGGGTTTCGTAT 58.081 39.130 0.00 0.00 38.50 3.06
4002 6601 6.618287 TCACTTGTTTGGACTTTGTATCTG 57.382 37.500 0.00 0.00 0.00 2.90
4150 6757 0.537653 GTGAAGGAGCCCTAGGACAC 59.462 60.000 11.48 0.00 31.13 3.67
4316 9313 5.334646 CGACTTAGCAGTAGAGTGTGTTACA 60.335 44.000 0.00 0.00 31.22 2.41
4582 9614 3.202829 ACTGGGTACAAAACGACACAT 57.797 42.857 0.00 0.00 0.00 3.21
4747 9785 6.176896 TCACCATAGCAGTTAAGCAAACATA 58.823 36.000 4.96 0.00 40.83 2.29
4805 9843 2.611292 GTCCATGGCTTTCATCTTCTCG 59.389 50.000 6.96 0.00 32.92 4.04
4882 10179 0.332972 GGGGATTTTCTCTGGCTGGT 59.667 55.000 0.00 0.00 0.00 4.00
4981 10278 2.295885 CAGCCTCCAGGTCATTCATTC 58.704 52.381 0.00 0.00 37.57 2.67
5203 10556 6.899393 AAGCATTTCTTGAATGTGGACTTA 57.101 33.333 1.30 0.00 45.62 2.24
5276 10629 2.001812 TTTGCTGCAAAGACGCAAAA 57.998 40.000 22.84 0.00 46.78 2.44
5281 10634 3.631144 TGAAAGATTTGCTGCAAAGACG 58.369 40.909 28.86 0.00 36.76 4.18
5337 10690 8.523915 AGCTTTGATCATAACATTTGTATCCA 57.476 30.769 0.00 0.00 0.00 3.41
5472 10836 1.063972 CCAATGCCGCGGTAACATG 59.936 57.895 28.70 21.33 0.00 3.21
5487 10851 4.831674 TTGCATCTCTCAAGATCTCCAA 57.168 40.909 0.00 0.00 40.38 3.53
5666 11030 1.272490 GCAGCTATATAGGTCCGCACA 59.728 52.381 11.52 0.00 30.45 4.57
5879 11243 1.664151 GGGCTTTTCACGAGATAACGG 59.336 52.381 0.00 0.00 37.61 4.44
5926 11290 6.233434 CGAGGGATGATAAAGATCCATCAAA 58.767 40.000 12.48 0.00 46.62 2.69
5949 11313 0.670546 ACAGAAATCCGGTGACAGCG 60.671 55.000 19.75 19.75 39.06 5.18
5973 11337 3.850173 ACCAAAGGCCCTAGAAATGTAGA 59.150 43.478 0.00 0.00 0.00 2.59
6277 11641 4.832590 TTAGAGAATCGTACTAGCAGGC 57.167 45.455 0.00 0.00 42.67 4.85
6278 11642 8.649973 AAAAATTAGAGAATCGTACTAGCAGG 57.350 34.615 0.00 0.00 42.67 4.85
6343 11707 9.190317 ACTCTATACAGTATCACAAATCACTCA 57.810 33.333 0.00 0.00 0.00 3.41
6344 11708 9.672086 GACTCTATACAGTATCACAAATCACTC 57.328 37.037 0.00 0.00 0.00 3.51
6346 11710 9.803315 TTGACTCTATACAGTATCACAAATCAC 57.197 33.333 0.00 0.00 0.00 3.06
6353 11717 9.680315 GGTGTAATTGACTCTATACAGTATCAC 57.320 37.037 0.00 0.00 0.00 3.06
6359 11723 5.977725 CACCGGTGTAATTGACTCTATACAG 59.022 44.000 26.95 0.00 0.00 2.74
6360 11724 5.163488 CCACCGGTGTAATTGACTCTATACA 60.163 44.000 31.80 0.00 0.00 2.29
6361 11725 5.163478 ACCACCGGTGTAATTGACTCTATAC 60.163 44.000 31.80 0.00 32.98 1.47
6362 11726 4.957954 ACCACCGGTGTAATTGACTCTATA 59.042 41.667 31.80 0.00 32.98 1.31
6363 11727 3.773119 ACCACCGGTGTAATTGACTCTAT 59.227 43.478 31.80 0.00 32.98 1.98
6394 11758 4.034048 CACTAAGGTGATCATTTACGCCAC 59.966 45.833 0.00 0.00 45.61 5.01
6406 11770 5.482908 CACAAGTTCTAGCACTAAGGTGAT 58.517 41.667 13.05 0.00 45.61 3.06
6543 12161 2.823154 TGTTATTTGCTGGGTTGGCTAC 59.177 45.455 0.00 0.00 0.00 3.58
6639 12257 6.320418 ACTTCTTATTTTTCGTTCCCTGTGTT 59.680 34.615 0.00 0.00 0.00 3.32
6701 12319 0.454600 TCAGGCCGCTAGTACGAAAG 59.545 55.000 0.00 0.00 34.06 2.62
6730 12348 1.134401 TGTATTGCTAGGTCCTGCTGC 60.134 52.381 0.00 4.08 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.