Multiple sequence alignment - TraesCS6A01G091100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G091100 chr6A 100.000 5832 0 0 319 6150 59782631 59788462 0.000000e+00 10770.0
1 TraesCS6A01G091100 chr6A 87.874 2573 239 39 3382 5890 59708729 59711292 0.000000e+00 2955.0
2 TraesCS6A01G091100 chr6A 84.611 1787 222 33 3317 5060 59676069 59677845 0.000000e+00 1727.0
3 TraesCS6A01G091100 chr6A 91.421 373 25 3 991 1362 59808223 59808589 7.110000e-139 505.0
4 TraesCS6A01G091100 chr6A 86.970 330 26 7 2016 2330 59809306 59809633 7.580000e-94 355.0
5 TraesCS6A01G091100 chr6A 84.118 340 32 10 1450 1767 59708108 59708447 5.990000e-80 309.0
6 TraesCS6A01G091100 chr6A 86.047 258 27 6 2349 2605 59809700 59809949 1.020000e-67 268.0
7 TraesCS6A01G091100 chr6A 91.912 136 11 0 5900 6035 59711358 59711493 2.260000e-44 191.0
8 TraesCS6A01G091100 chr6A 100.000 82 0 0 1 82 59782313 59782394 1.070000e-32 152.0
9 TraesCS6A01G091100 chr6A 87.611 113 14 0 6038 6150 582917329 582917217 1.390000e-26 132.0
10 TraesCS6A01G091100 chr6A 92.000 50 3 1 5610 5659 59814590 59814638 1.110000e-07 69.4
11 TraesCS6A01G091100 chr6A 82.667 75 6 6 5258 5326 59346430 59346503 6.660000e-05 60.2
12 TraesCS6A01G091100 chr6D 96.200 2842 90 6 2881 5705 45208346 45211186 0.000000e+00 4634.0
13 TraesCS6A01G091100 chr6D 88.442 2561 242 34 3382 5892 45203446 45206002 0.000000e+00 3040.0
14 TraesCS6A01G091100 chr6D 85.003 1667 206 27 3426 5060 44505976 44507630 0.000000e+00 1653.0
15 TraesCS6A01G091100 chr6D 84.754 1666 211 26 3426 5060 44736206 44737859 0.000000e+00 1629.0
16 TraesCS6A01G091100 chr6D 94.000 900 47 3 3589 4487 45479905 45480798 0.000000e+00 1356.0
17 TraesCS6A01G091100 chr6D 92.282 596 32 5 921 1504 45206238 45206831 0.000000e+00 833.0
18 TraesCS6A01G091100 chr6D 92.759 580 20 7 2231 2810 45207454 45208011 0.000000e+00 819.0
19 TraesCS6A01G091100 chr6D 92.290 428 28 3 5612 6035 45211653 45212079 2.450000e-168 603.0
20 TraesCS6A01G091100 chr6D 95.860 314 12 1 1871 2184 45207135 45207447 1.980000e-139 507.0
21 TraesCS6A01G091100 chr6D 90.860 372 28 1 991 1362 45478087 45478452 1.540000e-135 494.0
22 TraesCS6A01G091100 chr6D 87.147 389 45 3 933 1317 45202264 45202651 2.630000e-118 436.0
23 TraesCS6A01G091100 chr6D 87.915 331 24 5 2016 2330 45479174 45479504 5.820000e-100 375.0
24 TraesCS6A01G091100 chr6D 86.826 334 28 8 1450 1767 45202831 45203164 5.860000e-95 359.0
25 TraesCS6A01G091100 chr6D 94.860 214 11 0 1554 1767 45206923 45207136 9.880000e-88 335.0
26 TraesCS6A01G091100 chr6D 86.047 258 27 6 2349 2605 45479571 45479820 1.020000e-67 268.0
27 TraesCS6A01G091100 chr6D 90.299 134 13 0 660 793 459356285 459356152 6.340000e-40 176.0
28 TraesCS6A01G091100 chr6D 86.331 139 12 3 511 647 45212546 45212679 1.790000e-30 145.0
29 TraesCS6A01G091100 chr6D 83.908 87 8 6 5612 5695 45482067 45482150 1.840000e-10 78.7
30 TraesCS6A01G091100 chr6D 84.375 64 4 5 5258 5315 44507824 44507887 2.390000e-04 58.4
31 TraesCS6A01G091100 chr6D 84.375 64 4 5 5258 5315 44738052 44738115 2.390000e-04 58.4
32 TraesCS6A01G091100 chr6B 93.526 2873 106 20 2881 5705 113846091 113848931 0.000000e+00 4202.0
33 TraesCS6A01G091100 chr6B 88.660 1896 179 22 4166 6035 113783435 113785320 0.000000e+00 2278.0
34 TraesCS6A01G091100 chr6B 85.210 1359 168 20 3727 5060 113771078 113772428 0.000000e+00 1365.0
35 TraesCS6A01G091100 chr6B 90.370 540 27 3 1125 1664 113843649 113844163 0.000000e+00 686.0
36 TraesCS6A01G091100 chr6B 92.947 397 21 3 5640 6033 113849362 113849754 6.920000e-159 571.0
37 TraesCS6A01G091100 chr6B 83.291 395 49 12 5612 5999 114028276 114028660 1.270000e-91 348.0
38 TraesCS6A01G091100 chr6B 85.928 334 31 8 1450 1767 113781771 113782104 5.900000e-90 342.0
39 TraesCS6A01G091100 chr6B 84.308 325 35 6 937 1258 113780910 113781221 2.790000e-78 303.0
40 TraesCS6A01G091100 chr6B 96.154 130 5 0 984 1113 113843464 113843593 4.830000e-51 213.0
41 TraesCS6A01G091100 chr6B 88.182 110 13 0 511 620 113850120 113850229 1.390000e-26 132.0
42 TraesCS6A01G091100 chr6B 97.101 69 1 1 2460 2527 113844192 113844260 1.400000e-21 115.0
43 TraesCS6A01G091100 chr6B 84.375 64 4 5 5258 5315 113657787 113657850 2.390000e-04 58.4
44 TraesCS6A01G091100 chr5D 96.491 114 4 0 1763 1876 521523688 521523801 8.140000e-44 189.0
45 TraesCS6A01G091100 chr5D 88.889 135 15 0 660 794 330702999 330703133 3.810000e-37 167.0
46 TraesCS6A01G091100 chr4A 91.241 137 12 0 660 796 140763864 140764000 2.930000e-43 187.0
47 TraesCS6A01G091100 chr4A 94.872 117 5 1 1765 1880 720526580 720526696 1.360000e-41 182.0
48 TraesCS6A01G091100 chrUn 94.872 117 5 1 1765 1880 51053148 51053032 1.360000e-41 182.0
49 TraesCS6A01G091100 chrUn 94.872 117 5 1 1765 1880 342353519 342353403 1.360000e-41 182.0
50 TraesCS6A01G091100 chrUn 94.828 116 5 1 1757 1872 77885381 77885267 4.900000e-41 180.0
51 TraesCS6A01G091100 chrUn 86.842 114 14 1 6038 6150 42175456 42175343 6.470000e-25 126.0
52 TraesCS6A01G091100 chr7B 95.575 113 5 0 1763 1875 297402183 297402295 1.360000e-41 182.0
53 TraesCS6A01G091100 chr7B 94.783 115 6 0 1765 1879 730205113 730205227 4.900000e-41 180.0
54 TraesCS6A01G091100 chr7B 89.552 134 14 0 661 794 96812038 96812171 2.950000e-38 171.0
55 TraesCS6A01G091100 chr7B 97.297 37 1 0 991 1027 684367701 684367737 5.150000e-06 63.9
56 TraesCS6A01G091100 chr2D 94.783 115 5 1 1758 1872 111321520 111321407 1.760000e-40 178.0
57 TraesCS6A01G091100 chr2D 94.017 117 7 0 1764 1880 593429590 593429706 1.760000e-40 178.0
58 TraesCS6A01G091100 chr7D 89.630 135 14 0 661 795 577917702 577917836 8.200000e-39 172.0
59 TraesCS6A01G091100 chr7D 88.889 135 15 0 660 794 315668054 315667920 3.810000e-37 167.0
60 TraesCS6A01G091100 chr7D 86.842 114 15 0 6037 6150 400297895 400298008 1.800000e-25 128.0
61 TraesCS6A01G091100 chr7D 85.714 56 8 0 790 845 111749196 111749251 6.660000e-05 60.2
62 TraesCS6A01G091100 chr3D 90.698 129 12 0 666 794 452657885 452658013 8.200000e-39 172.0
63 TraesCS6A01G091100 chr3D 90.000 130 13 0 666 795 424623475 424623604 1.060000e-37 169.0
64 TraesCS6A01G091100 chr3D 87.500 112 14 0 6039 6150 500223179 500223068 5.000000e-26 130.0
65 TraesCS6A01G091100 chr2B 87.500 144 15 3 660 803 105905975 105905835 4.930000e-36 163.0
66 TraesCS6A01G091100 chr3A 89.474 114 12 0 6037 6150 725923636 725923749 1.790000e-30 145.0
67 TraesCS6A01G091100 chr4D 88.496 113 13 0 6038 6150 484720786 484720674 2.990000e-28 137.0
68 TraesCS6A01G091100 chr4D 89.623 106 10 1 6038 6143 484719539 484719643 3.870000e-27 134.0
69 TraesCS6A01G091100 chr1D 89.524 105 10 1 6038 6142 411190944 411190841 1.390000e-26 132.0
70 TraesCS6A01G091100 chr1D 85.455 55 8 0 791 845 81062712 81062658 2.390000e-04 58.4
71 TraesCS6A01G091100 chr1A 86.726 113 13 2 6039 6150 22538753 22538642 2.330000e-24 124.0
72 TraesCS6A01G091100 chr1A 90.909 55 5 0 791 845 59128239 59128293 2.380000e-09 75.0
73 TraesCS6A01G091100 chr5B 89.091 55 6 0 791 845 681782131 681782185 1.110000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G091100 chr6A 59782313 59788462 6149 False 5461.000000 10770 100.000000 1 6150 2 chr6A.!!$F5 6149
1 TraesCS6A01G091100 chr6A 59676069 59677845 1776 False 1727.000000 1727 84.611000 3317 5060 1 chr6A.!!$F2 1743
2 TraesCS6A01G091100 chr6A 59708108 59711493 3385 False 1151.666667 2955 87.968000 1450 6035 3 chr6A.!!$F4 4585
3 TraesCS6A01G091100 chr6A 59808223 59809949 1726 False 376.000000 505 88.146000 991 2605 3 chr6A.!!$F6 1614
4 TraesCS6A01G091100 chr6D 45202264 45212679 10415 False 1171.100000 4634 91.299700 511 6035 10 chr6D.!!$F3 5524
5 TraesCS6A01G091100 chr6D 44505976 44507887 1911 False 855.700000 1653 84.689000 3426 5315 2 chr6D.!!$F1 1889
6 TraesCS6A01G091100 chr6D 44736206 44738115 1909 False 843.700000 1629 84.564500 3426 5315 2 chr6D.!!$F2 1889
7 TraesCS6A01G091100 chr6D 45478087 45482150 4063 False 514.340000 1356 88.546000 991 5695 5 chr6D.!!$F4 4704
8 TraesCS6A01G091100 chr6B 113771078 113772428 1350 False 1365.000000 1365 85.210000 3727 5060 1 chr6B.!!$F2 1333
9 TraesCS6A01G091100 chr6B 113843464 113850229 6765 False 986.500000 4202 93.046667 511 6033 6 chr6B.!!$F5 5522
10 TraesCS6A01G091100 chr6B 113780910 113785320 4410 False 974.333333 2278 86.298667 937 6035 3 chr6B.!!$F4 5098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.038159 GGAGCATAGCGAGCCGTAAT 60.038 55.000 0.0 0.0 0.00 1.89 F
1720 5461 0.249868 TATATGTGCCGCTGCCTGTC 60.250 55.000 0.0 0.0 36.33 3.51 F
2126 6079 0.171455 GTGCTGACGTGTAGAGGAGG 59.829 60.000 0.0 0.0 0.00 4.30 F
2830 7250 0.734253 CGTGGCTTGGAAGTCTCTCG 60.734 60.000 0.0 0.0 0.00 4.04 F
3099 8590 1.067582 GTAGGGATTGACTCGGGCG 59.932 63.158 0.0 0.0 0.00 6.13 F
3258 8749 1.068055 GTTTTGCTGCACTCCCATCAG 60.068 52.381 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 5508 0.179065 GTAATTCCGAACGGAGGGGG 60.179 60.000 15.34 0.00 46.06 5.40 R
2876 7944 0.539986 TCGAAAGAAATCTCCCGGGG 59.460 55.000 23.50 12.05 37.03 5.73 R
3238 8729 0.961019 TGATGGGAGTGCAGCAAAAC 59.039 50.000 0.00 0.00 0.00 2.43 R
4631 10516 4.500603 AGATTTGCTGCAAAGACTCAAG 57.499 40.909 28.86 0.00 36.76 3.02 R
4684 10569 6.258507 TCATGACATTTGTTATCCTCATGTCG 59.741 38.462 0.00 0.00 39.59 4.35 R
5256 11145 2.303022 ACTTCATCCGGTGACATCAAGT 59.697 45.455 0.00 2.23 36.32 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.554692 CGTCCCATCGCGAGCAAC 61.555 66.667 16.66 9.18 0.00 4.17
20 21 3.499737 CCCATCGCGAGCAACCAC 61.500 66.667 16.66 0.00 0.00 4.16
21 22 2.741985 CCATCGCGAGCAACCACA 60.742 61.111 16.66 0.00 0.00 4.17
22 23 2.743752 CCATCGCGAGCAACCACAG 61.744 63.158 16.66 0.00 0.00 3.66
23 24 3.121030 ATCGCGAGCAACCACAGC 61.121 61.111 16.66 0.00 0.00 4.40
62 63 4.809496 CAGCTTGGGCAGGCGGAT 62.809 66.667 0.00 0.00 41.70 4.18
63 64 4.496336 AGCTTGGGCAGGCGGATC 62.496 66.667 0.00 0.00 41.70 3.36
64 65 4.496336 GCTTGGGCAGGCGGATCT 62.496 66.667 0.00 0.00 38.54 2.75
65 66 2.515523 CTTGGGCAGGCGGATCTG 60.516 66.667 0.00 0.00 37.79 2.90
66 67 3.008517 TTGGGCAGGCGGATCTGA 61.009 61.111 5.48 0.00 36.93 3.27
67 68 2.937379 CTTGGGCAGGCGGATCTGAG 62.937 65.000 5.48 0.00 36.93 3.35
68 69 3.157252 GGGCAGGCGGATCTGAGA 61.157 66.667 5.48 0.00 36.93 3.27
69 70 2.107953 GGCAGGCGGATCTGAGAC 59.892 66.667 5.48 0.00 36.93 3.36
70 71 2.725312 GGCAGGCGGATCTGAGACA 61.725 63.158 5.48 0.00 36.93 3.41
71 72 1.227205 GCAGGCGGATCTGAGACAG 60.227 63.158 5.48 0.00 36.93 3.51
72 73 1.670949 GCAGGCGGATCTGAGACAGA 61.671 60.000 5.48 3.95 44.99 3.41
74 75 1.040339 AGGCGGATCTGAGACAGACC 61.040 60.000 5.48 6.88 43.63 3.85
76 77 2.022240 GCGGATCTGAGACAGACCCC 62.022 65.000 5.48 8.62 41.03 4.95
77 78 1.729470 CGGATCTGAGACAGACCCCG 61.729 65.000 20.66 20.66 41.03 5.73
78 79 1.439644 GATCTGAGACAGACCCCGC 59.560 63.158 3.54 0.00 43.63 6.13
79 80 2.022240 GATCTGAGACAGACCCCGCC 62.022 65.000 3.54 0.00 43.63 6.13
80 81 2.805313 ATCTGAGACAGACCCCGCCA 62.805 60.000 3.54 0.00 43.63 5.69
335 336 2.186384 CAGAAGCCAGCGGAGAGG 59.814 66.667 0.00 0.00 0.00 3.69
348 349 2.436646 AGAGGCGGCCGTGATTTG 60.437 61.111 28.70 0.00 0.00 2.32
350 351 2.436646 AGGCGGCCGTGATTTGAG 60.437 61.111 28.70 0.00 0.00 3.02
351 352 4.179579 GGCGGCCGTGATTTGAGC 62.180 66.667 28.70 5.90 0.00 4.26
352 353 4.520846 GCGGCCGTGATTTGAGCG 62.521 66.667 28.70 0.00 0.00 5.03
356 357 3.864686 CCGTGATTTGAGCGGCGG 61.865 66.667 9.78 0.00 38.99 6.13
357 358 3.118454 CGTGATTTGAGCGGCGGT 61.118 61.111 13.08 13.08 0.00 5.68
359 360 2.745884 TGATTTGAGCGGCGGTGG 60.746 61.111 19.47 0.00 0.00 4.61
360 361 4.179579 GATTTGAGCGGCGGTGGC 62.180 66.667 19.47 2.98 38.90 5.01
412 413 2.524394 GGAGCGGGAGGGAGCATA 60.524 66.667 0.00 0.00 35.48 3.14
417 418 2.925262 CGGGAGGGAGCATAGCGAG 61.925 68.421 0.00 0.00 0.00 5.03
418 419 2.341911 GGAGGGAGCATAGCGAGC 59.658 66.667 0.00 0.00 0.00 5.03
419 420 2.341911 GAGGGAGCATAGCGAGCC 59.658 66.667 0.00 0.00 0.00 4.70
421 422 3.917760 GGGAGCATAGCGAGCCGT 61.918 66.667 0.00 0.00 0.00 5.68
422 423 2.561956 GGGAGCATAGCGAGCCGTA 61.562 63.158 0.00 0.00 0.00 4.02
423 424 1.362717 GGAGCATAGCGAGCCGTAA 59.637 57.895 0.00 0.00 0.00 3.18
424 425 0.038159 GGAGCATAGCGAGCCGTAAT 60.038 55.000 0.00 0.00 0.00 1.89
425 426 1.201647 GGAGCATAGCGAGCCGTAATA 59.798 52.381 0.00 0.00 0.00 0.98
426 427 2.159226 GGAGCATAGCGAGCCGTAATAT 60.159 50.000 0.00 0.00 0.00 1.28
428 429 3.926616 AGCATAGCGAGCCGTAATATTT 58.073 40.909 0.00 0.00 0.00 1.40
429 430 4.315803 AGCATAGCGAGCCGTAATATTTT 58.684 39.130 0.00 0.00 0.00 1.82
431 432 5.929992 AGCATAGCGAGCCGTAATATTTTTA 59.070 36.000 0.00 0.00 0.00 1.52
433 434 7.119262 AGCATAGCGAGCCGTAATATTTTTATT 59.881 33.333 0.00 0.00 0.00 1.40
434 435 8.385111 GCATAGCGAGCCGTAATATTTTTATTA 58.615 33.333 0.00 0.00 0.00 0.98
438 439 8.448615 AGCGAGCCGTAATATTTTTATTATTCC 58.551 33.333 0.00 0.00 0.00 3.01
439 440 8.448615 GCGAGCCGTAATATTTTTATTATTCCT 58.551 33.333 0.00 0.00 0.00 3.36
454 455 9.540538 TTTATTATTCCTTTTGAGTTCCCATCA 57.459 29.630 0.00 0.00 0.00 3.07
455 456 7.651027 ATTATTCCTTTTGAGTTCCCATCAG 57.349 36.000 0.00 0.00 0.00 2.90
456 457 3.439857 TCCTTTTGAGTTCCCATCAGG 57.560 47.619 0.00 0.00 0.00 3.86
457 458 1.821136 CCTTTTGAGTTCCCATCAGGC 59.179 52.381 0.00 0.00 34.51 4.85
458 459 2.517959 CTTTTGAGTTCCCATCAGGCA 58.482 47.619 0.00 0.00 34.51 4.75
462 463 3.173953 TGAGTTCCCATCAGGCATTTT 57.826 42.857 0.00 0.00 34.51 1.82
463 464 2.827322 TGAGTTCCCATCAGGCATTTTG 59.173 45.455 0.00 0.00 34.51 2.44
465 466 4.016444 GAGTTCCCATCAGGCATTTTGTA 58.984 43.478 0.00 0.00 34.51 2.41
467 468 5.765510 AGTTCCCATCAGGCATTTTGTATA 58.234 37.500 0.00 0.00 34.51 1.47
469 470 4.469657 TCCCATCAGGCATTTTGTATACC 58.530 43.478 0.00 0.00 34.51 2.73
472 473 5.279106 CCCATCAGGCATTTTGTATACCATG 60.279 44.000 0.00 1.83 0.00 3.66
473 474 5.535783 CCATCAGGCATTTTGTATACCATGA 59.464 40.000 0.00 0.00 0.00 3.07
474 475 6.040729 CCATCAGGCATTTTGTATACCATGAA 59.959 38.462 0.00 0.00 0.00 2.57
475 476 6.449635 TCAGGCATTTTGTATACCATGAAC 57.550 37.500 0.00 0.00 0.00 3.18
476 477 5.359576 TCAGGCATTTTGTATACCATGAACC 59.640 40.000 0.00 0.00 0.00 3.62
477 478 5.126869 CAGGCATTTTGTATACCATGAACCA 59.873 40.000 0.00 0.00 0.00 3.67
478 479 5.898972 AGGCATTTTGTATACCATGAACCAT 59.101 36.000 0.00 0.00 0.00 3.55
479 480 5.984926 GGCATTTTGTATACCATGAACCATG 59.015 40.000 0.00 0.00 41.10 3.66
482 483 7.596248 GCATTTTGTATACCATGAACCATGATC 59.404 37.037 8.38 0.00 43.81 2.92
483 484 7.581213 TTTTGTATACCATGAACCATGATCC 57.419 36.000 8.38 0.00 43.81 3.36
484 485 5.241403 TGTATACCATGAACCATGATCCC 57.759 43.478 8.38 0.00 43.81 3.85
485 486 3.814504 ATACCATGAACCATGATCCCC 57.185 47.619 8.38 0.00 43.81 4.81
486 487 1.307878 ACCATGAACCATGATCCCCA 58.692 50.000 8.38 0.00 43.81 4.96
488 489 2.044215 ACCATGAACCATGATCCCCAAA 59.956 45.455 8.38 0.00 43.81 3.28
489 490 3.310805 ACCATGAACCATGATCCCCAAAT 60.311 43.478 8.38 0.00 43.81 2.32
490 491 3.712733 CCATGAACCATGATCCCCAAATT 59.287 43.478 8.38 0.00 43.81 1.82
491 492 4.900652 CCATGAACCATGATCCCCAAATTA 59.099 41.667 8.38 0.00 43.81 1.40
492 493 5.366186 CCATGAACCATGATCCCCAAATTAA 59.634 40.000 8.38 0.00 43.81 1.40
493 494 6.043474 CCATGAACCATGATCCCCAAATTAAT 59.957 38.462 8.38 0.00 43.81 1.40
494 495 7.235193 CCATGAACCATGATCCCCAAATTAATA 59.765 37.037 8.38 0.00 43.81 0.98
495 496 8.649591 CATGAACCATGATCCCCAAATTAATAA 58.350 33.333 0.00 0.00 43.81 1.40
499 500 9.667607 AACCATGATCCCCAAATTAATAATGTA 57.332 29.630 0.00 0.00 0.00 2.29
500 501 9.312904 ACCATGATCCCCAAATTAATAATGTAG 57.687 33.333 0.00 0.00 0.00 2.74
501 502 9.532494 CCATGATCCCCAAATTAATAATGTAGA 57.468 33.333 0.00 0.00 0.00 2.59
547 3142 6.444633 AGATCTTTTGTGTCATTTTCTGCAG 58.555 36.000 7.63 7.63 0.00 4.41
574 3169 2.866762 GCTTCCCTATAAAGCGTGTCAG 59.133 50.000 0.00 0.00 39.71 3.51
578 3173 4.018490 TCCCTATAAAGCGTGTCAGTGTA 58.982 43.478 0.00 0.00 0.00 2.90
580 3175 4.745125 CCCTATAAAGCGTGTCAGTGTATG 59.255 45.833 0.00 0.00 0.00 2.39
581 3176 4.209288 CCTATAAAGCGTGTCAGTGTATGC 59.791 45.833 6.32 6.32 0.00 3.14
582 3177 1.877637 AAAGCGTGTCAGTGTATGCA 58.122 45.000 13.90 0.00 0.00 3.96
583 3178 2.099141 AAGCGTGTCAGTGTATGCAT 57.901 45.000 3.79 3.79 0.00 3.96
585 3180 3.245518 AGCGTGTCAGTGTATGCATTA 57.754 42.857 3.54 0.00 0.00 1.90
586 3181 2.930040 AGCGTGTCAGTGTATGCATTAC 59.070 45.455 3.54 5.00 0.00 1.89
599 3194 6.923012 TGTATGCATTACACAGCTGAAATTT 58.077 32.000 23.35 0.00 35.86 1.82
600 3195 6.807720 TGTATGCATTACACAGCTGAAATTTG 59.192 34.615 23.35 10.43 35.86 2.32
603 3198 6.923012 TGCATTACACAGCTGAAATTTGTAT 58.077 32.000 23.35 5.78 0.00 2.29
605 3200 6.237648 GCATTACACAGCTGAAATTTGTATGC 60.238 38.462 23.35 20.99 0.00 3.14
606 3201 4.178545 ACACAGCTGAAATTTGTATGCC 57.821 40.909 23.35 0.00 0.00 4.40
607 3202 3.573538 ACACAGCTGAAATTTGTATGCCA 59.426 39.130 23.35 0.00 0.00 4.92
623 3787 2.168621 CAGTTGCGCGTCGAGTTG 59.831 61.111 8.43 0.00 0.00 3.16
657 3822 5.466058 TCAATTTGTGATGCAATTTCCACAC 59.534 36.000 0.00 0.00 38.99 3.82
659 3824 1.617850 TGTGATGCAATTTCCACACCC 59.382 47.619 0.00 0.00 34.96 4.61
661 3826 3.088532 GTGATGCAATTTCCACACCCTA 58.911 45.455 0.00 0.00 0.00 3.53
665 3830 3.300388 TGCAATTTCCACACCCTAAACA 58.700 40.909 0.00 0.00 0.00 2.83
666 3831 3.900601 TGCAATTTCCACACCCTAAACAT 59.099 39.130 0.00 0.00 0.00 2.71
667 3832 4.346418 TGCAATTTCCACACCCTAAACATT 59.654 37.500 0.00 0.00 0.00 2.71
668 3833 5.163258 TGCAATTTCCACACCCTAAACATTT 60.163 36.000 0.00 0.00 0.00 2.32
669 3834 5.408299 GCAATTTCCACACCCTAAACATTTC 59.592 40.000 0.00 0.00 0.00 2.17
670 3835 6.520272 CAATTTCCACACCCTAAACATTTCA 58.480 36.000 0.00 0.00 0.00 2.69
671 3836 6.739331 ATTTCCACACCCTAAACATTTCAA 57.261 33.333 0.00 0.00 0.00 2.69
672 3837 6.546428 TTTCCACACCCTAAACATTTCAAA 57.454 33.333 0.00 0.00 0.00 2.69
673 3838 6.739331 TTCCACACCCTAAACATTTCAAAT 57.261 33.333 0.00 0.00 0.00 2.32
674 3839 7.841282 TTCCACACCCTAAACATTTCAAATA 57.159 32.000 0.00 0.00 0.00 1.40
675 3840 7.841282 TCCACACCCTAAACATTTCAAATAA 57.159 32.000 0.00 0.00 0.00 1.40
676 3841 8.251383 TCCACACCCTAAACATTTCAAATAAA 57.749 30.769 0.00 0.00 0.00 1.40
677 3842 8.145122 TCCACACCCTAAACATTTCAAATAAAC 58.855 33.333 0.00 0.00 0.00 2.01
678 3843 8.147704 CCACACCCTAAACATTTCAAATAAACT 58.852 33.333 0.00 0.00 0.00 2.66
701 3866 9.565213 AACTACAACTTACGAATGTATGTAGAC 57.435 33.333 14.79 0.00 37.82 2.59
702 3867 8.954350 ACTACAACTTACGAATGTATGTAGACT 58.046 33.333 14.79 0.00 37.82 3.24
703 3868 9.784680 CTACAACTTACGAATGTATGTAGACTT 57.215 33.333 4.47 0.00 37.82 3.01
732 3897 9.677567 TTTAAAATGTAGATTCACTCACTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
733 3898 7.516198 AAAATGTAGATTCACTCACTTTGCT 57.484 32.000 0.00 0.00 0.00 3.91
734 3899 7.516198 AAATGTAGATTCACTCACTTTGCTT 57.484 32.000 0.00 0.00 0.00 3.91
735 3900 6.734104 ATGTAGATTCACTCACTTTGCTTC 57.266 37.500 0.00 0.00 0.00 3.86
736 3901 4.686091 TGTAGATTCACTCACTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
737 3902 3.733337 AGATTCACTCACTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
738 3903 4.883083 AGATTCACTCACTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
739 3904 5.482908 AGATTCACTCACTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
740 3905 4.990543 TTCACTCACTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
741 3906 3.990092 TCACTCACTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
742 3907 5.128992 TCACTCACTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
743 3908 5.161358 TCACTCACTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
744 3909 4.923871 CACTCACTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
745 3910 5.405571 CACTCACTTTGCTTCGTATGTAGTT 59.594 40.000 0.00 0.00 0.00 2.24
746 3911 6.584942 CACTCACTTTGCTTCGTATGTAGTTA 59.415 38.462 0.00 0.00 0.00 2.24
747 3912 7.275779 CACTCACTTTGCTTCGTATGTAGTTAT 59.724 37.037 0.00 0.00 0.00 1.89
748 3913 7.817962 ACTCACTTTGCTTCGTATGTAGTTATT 59.182 33.333 0.00 0.00 0.00 1.40
749 3914 8.542497 TCACTTTGCTTCGTATGTAGTTATTT 57.458 30.769 0.00 0.00 0.00 1.40
750 3915 8.440059 TCACTTTGCTTCGTATGTAGTTATTTG 58.560 33.333 0.00 0.00 0.00 2.32
751 3916 8.227791 CACTTTGCTTCGTATGTAGTTATTTGT 58.772 33.333 0.00 0.00 0.00 2.83
752 3917 8.780249 ACTTTGCTTCGTATGTAGTTATTTGTT 58.220 29.630 0.00 0.00 0.00 2.83
753 3918 8.942669 TTTGCTTCGTATGTAGTTATTTGTTG 57.057 30.769 0.00 0.00 0.00 3.33
754 3919 7.892778 TGCTTCGTATGTAGTTATTTGTTGA 57.107 32.000 0.00 0.00 0.00 3.18
755 3920 8.312896 TGCTTCGTATGTAGTTATTTGTTGAA 57.687 30.769 0.00 0.00 0.00 2.69
756 3921 8.775527 TGCTTCGTATGTAGTTATTTGTTGAAA 58.224 29.630 0.00 0.00 0.00 2.69
757 3922 9.769093 GCTTCGTATGTAGTTATTTGTTGAAAT 57.231 29.630 0.00 0.00 35.83 2.17
788 3953 9.908152 AGAAAGACAAATATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
789 3954 9.902196 GAAAGACAAATATTTAAAAACGGAGGA 57.098 29.630 0.00 0.00 0.00 3.71
791 3956 9.908152 AAGACAAATATTTAAAAACGGAGGAAG 57.092 29.630 0.00 0.00 0.00 3.46
792 3957 9.074576 AGACAAATATTTAAAAACGGAGGAAGT 57.925 29.630 0.00 0.00 0.00 3.01
801 3966 9.947433 TTTAAAAACGGAGGAAGTATAGATTCA 57.053 29.630 0.00 0.00 0.00 2.57
802 3967 7.845066 AAAAACGGAGGAAGTATAGATTCAC 57.155 36.000 0.00 0.00 0.00 3.18
803 3968 6.793505 AAACGGAGGAAGTATAGATTCACT 57.206 37.500 0.00 0.00 0.00 3.41
804 3969 6.394025 AACGGAGGAAGTATAGATTCACTC 57.606 41.667 0.00 0.00 0.00 3.51
805 3970 5.446860 ACGGAGGAAGTATAGATTCACTCA 58.553 41.667 12.83 0.00 31.25 3.41
806 3971 5.299782 ACGGAGGAAGTATAGATTCACTCAC 59.700 44.000 12.83 0.00 31.25 3.51
807 3972 5.533154 CGGAGGAAGTATAGATTCACTCACT 59.467 44.000 12.83 0.00 31.25 3.41
808 3973 6.039941 CGGAGGAAGTATAGATTCACTCACTT 59.960 42.308 12.83 0.00 36.99 3.16
809 3974 7.416890 CGGAGGAAGTATAGATTCACTCACTTT 60.417 40.741 12.83 0.00 35.53 2.66
810 3975 7.708752 GGAGGAAGTATAGATTCACTCACTTTG 59.291 40.741 12.83 0.00 35.53 2.77
811 3976 8.140112 AGGAAGTATAGATTCACTCACTTTGT 57.860 34.615 0.00 0.00 35.53 2.83
812 3977 8.598041 AGGAAGTATAGATTCACTCACTTTGTT 58.402 33.333 0.00 0.00 35.53 2.83
813 3978 9.220767 GGAAGTATAGATTCACTCACTTTGTTT 57.779 33.333 0.00 0.00 35.53 2.83
862 4027 9.496873 TCTCTAGAAGTAGTAGATAGTTGATGC 57.503 37.037 0.00 0.00 0.00 3.91
864 4029 9.854668 TCTAGAAGTAGTAGATAGTTGATGCTT 57.145 33.333 0.00 0.00 0.00 3.91
866 4031 7.947282 AGAAGTAGTAGATAGTTGATGCTTCC 58.053 38.462 0.00 0.00 31.79 3.46
867 4032 6.658188 AGTAGTAGATAGTTGATGCTTCCC 57.342 41.667 0.00 0.00 0.00 3.97
869 4034 5.543507 AGTAGATAGTTGATGCTTCCCTG 57.456 43.478 0.00 0.00 0.00 4.45
872 4037 5.957771 AGATAGTTGATGCTTCCCTGTAA 57.042 39.130 0.00 0.00 0.00 2.41
875 4040 4.307032 AGTTGATGCTTCCCTGTAATGT 57.693 40.909 0.00 0.00 0.00 2.71
877 4042 5.079643 AGTTGATGCTTCCCTGTAATGTTT 58.920 37.500 0.00 0.00 0.00 2.83
878 4043 5.539955 AGTTGATGCTTCCCTGTAATGTTTT 59.460 36.000 0.00 0.00 0.00 2.43
881 4046 5.415701 TGATGCTTCCCTGTAATGTTTTCTC 59.584 40.000 0.00 0.00 0.00 2.87
882 4047 4.724399 TGCTTCCCTGTAATGTTTTCTCA 58.276 39.130 0.00 0.00 0.00 3.27
884 4049 5.415701 TGCTTCCCTGTAATGTTTTCTCATC 59.584 40.000 0.00 0.00 0.00 2.92
889 4054 7.230747 TCCCTGTAATGTTTTCTCATCTGAAA 58.769 34.615 0.00 0.00 34.55 2.69
891 4056 8.359642 CCCTGTAATGTTTTCTCATCTGAAAAA 58.640 33.333 4.33 0.00 44.32 1.94
912 4142 4.632538 AAAAAGAGAAAACACCGGTCAG 57.367 40.909 2.59 0.00 0.00 3.51
922 4152 1.076332 CACCGGTCAGGAAATCGTTC 58.924 55.000 2.59 0.00 45.00 3.95
928 4168 4.453136 CCGGTCAGGAAATCGTTCTTTTTA 59.547 41.667 0.00 0.00 45.00 1.52
1131 4421 4.794648 CGGGGCGGCTTTGATCCA 62.795 66.667 9.56 0.00 0.00 3.41
1222 4515 1.291132 GGACAACTATCTCCGCAAGC 58.709 55.000 0.00 0.00 0.00 4.01
1335 4947 1.194218 CCCAATCTCCCCGCAAAATT 58.806 50.000 0.00 0.00 0.00 1.82
1396 5008 1.006086 TATTGCTGTTCGATGCCACG 58.994 50.000 0.00 0.00 0.00 4.94
1446 5070 0.252197 AAGTAGTGGGTTCGGGATGC 59.748 55.000 0.00 0.00 0.00 3.91
1457 5134 0.397941 TCGGGATGCATCTCCATTCC 59.602 55.000 25.28 15.63 37.49 3.01
1546 5230 9.617975 GAATGTTCCTTTTAAGACTGAAGAATG 57.382 33.333 0.00 0.00 0.00 2.67
1549 5233 5.010282 TCCTTTTAAGACTGAAGAATGGGC 58.990 41.667 0.00 0.00 0.00 5.36
1720 5461 0.249868 TATATGTGCCGCTGCCTGTC 60.250 55.000 0.00 0.00 36.33 3.51
1742 5483 3.416156 CTTCCTGGGAACTTTGAAGAGG 58.584 50.000 0.00 0.00 35.56 3.69
1767 5508 3.120165 CCGCAGCTTCCTTTTCTTTCTAC 60.120 47.826 0.00 0.00 0.00 2.59
1768 5509 3.120165 CGCAGCTTCCTTTTCTTTCTACC 60.120 47.826 0.00 0.00 0.00 3.18
1769 5510 3.191581 GCAGCTTCCTTTTCTTTCTACCC 59.808 47.826 0.00 0.00 0.00 3.69
1770 5511 3.759086 CAGCTTCCTTTTCTTTCTACCCC 59.241 47.826 0.00 0.00 0.00 4.95
1771 5512 3.090037 GCTTCCTTTTCTTTCTACCCCC 58.910 50.000 0.00 0.00 0.00 5.40
1772 5513 3.245300 GCTTCCTTTTCTTTCTACCCCCT 60.245 47.826 0.00 0.00 0.00 4.79
1773 5514 4.590918 CTTCCTTTTCTTTCTACCCCCTC 58.409 47.826 0.00 0.00 0.00 4.30
1774 5515 2.917600 TCCTTTTCTTTCTACCCCCTCC 59.082 50.000 0.00 0.00 0.00 4.30
1775 5516 2.355818 CCTTTTCTTTCTACCCCCTCCG 60.356 54.545 0.00 0.00 0.00 4.63
1776 5517 2.034436 TTTCTTTCTACCCCCTCCGT 57.966 50.000 0.00 0.00 0.00 4.69
1777 5518 2.034436 TTCTTTCTACCCCCTCCGTT 57.966 50.000 0.00 0.00 0.00 4.44
1778 5519 1.565067 TCTTTCTACCCCCTCCGTTC 58.435 55.000 0.00 0.00 0.00 3.95
1779 5520 0.175073 CTTTCTACCCCCTCCGTTCG 59.825 60.000 0.00 0.00 0.00 3.95
1780 5521 1.259840 TTTCTACCCCCTCCGTTCGG 61.260 60.000 4.74 4.74 0.00 4.30
1781 5522 2.043652 CTACCCCCTCCGTTCGGA 60.044 66.667 13.34 13.34 0.00 4.55
1782 5523 1.683365 CTACCCCCTCCGTTCGGAA 60.683 63.158 14.79 0.00 33.41 4.30
1783 5524 1.002017 TACCCCCTCCGTTCGGAAT 59.998 57.895 14.79 2.09 33.41 3.01
1784 5525 0.618393 TACCCCCTCCGTTCGGAATT 60.618 55.000 14.79 1.26 33.41 2.17
1785 5526 0.618393 ACCCCCTCCGTTCGGAATTA 60.618 55.000 14.79 0.00 33.41 1.40
1786 5527 0.179065 CCCCCTCCGTTCGGAATTAC 60.179 60.000 14.79 0.00 33.41 1.89
1787 5528 0.828677 CCCCTCCGTTCGGAATTACT 59.171 55.000 14.79 0.00 33.41 2.24
1788 5529 1.208776 CCCCTCCGTTCGGAATTACTT 59.791 52.381 14.79 0.00 33.41 2.24
1789 5530 2.277084 CCCTCCGTTCGGAATTACTTG 58.723 52.381 14.79 1.97 33.41 3.16
1790 5531 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1791 5532 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1792 5533 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
1793 5534 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
1794 5535 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
1795 5536 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
1796 5537 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
1797 5538 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
1798 5539 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
1799 5540 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
1800 5541 7.799447 CGTTCGGAATTACTTGTCACAAAAATA 59.201 33.333 0.00 0.00 0.00 1.40
1801 5542 9.113876 GTTCGGAATTACTTGTCACAAAAATAG 57.886 33.333 0.00 0.00 0.00 1.73
1802 5543 8.610248 TCGGAATTACTTGTCACAAAAATAGA 57.390 30.769 0.00 0.00 0.00 1.98
1803 5544 9.226606 TCGGAATTACTTGTCACAAAAATAGAT 57.773 29.630 0.00 0.00 0.00 1.98
1804 5545 9.277565 CGGAATTACTTGTCACAAAAATAGATG 57.722 33.333 0.00 0.00 0.00 2.90
1847 5588 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
1848 5589 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
1849 5590 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
1850 5591 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
1851 5592 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
1852 5593 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
1853 5594 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1854 5595 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1855 5596 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1856 5597 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1857 5598 7.607991 ACATTCATTTCTTGGACGAGTAATTCT 59.392 33.333 0.00 0.00 0.00 2.40
1858 5599 6.968131 TCATTTCTTGGACGAGTAATTCTG 57.032 37.500 0.00 0.00 0.00 3.02
1859 5600 6.697395 TCATTTCTTGGACGAGTAATTCTGA 58.303 36.000 0.00 0.00 0.00 3.27
1860 5601 7.158697 TCATTTCTTGGACGAGTAATTCTGAA 58.841 34.615 0.00 0.00 0.00 3.02
1861 5602 6.780706 TTTCTTGGACGAGTAATTCTGAAC 57.219 37.500 0.00 0.00 0.00 3.18
1862 5603 5.462530 TCTTGGACGAGTAATTCTGAACA 57.537 39.130 0.00 0.00 0.00 3.18
1863 5604 5.470368 TCTTGGACGAGTAATTCTGAACAG 58.530 41.667 0.00 0.00 0.00 3.16
1864 5605 5.243060 TCTTGGACGAGTAATTCTGAACAGA 59.757 40.000 0.00 0.00 35.27 3.41
1865 5606 5.060662 TGGACGAGTAATTCTGAACAGAG 57.939 43.478 4.72 0.00 38.88 3.35
1866 5607 4.082190 TGGACGAGTAATTCTGAACAGAGG 60.082 45.833 4.72 0.00 38.88 3.69
1867 5608 4.425520 GACGAGTAATTCTGAACAGAGGG 58.574 47.826 4.72 0.00 38.88 4.30
1868 5609 4.087182 ACGAGTAATTCTGAACAGAGGGA 58.913 43.478 4.72 0.00 38.88 4.20
1869 5610 4.158764 ACGAGTAATTCTGAACAGAGGGAG 59.841 45.833 4.72 0.00 38.88 4.30
1870 5611 4.158764 CGAGTAATTCTGAACAGAGGGAGT 59.841 45.833 4.72 0.00 38.88 3.85
1871 5612 5.357314 CGAGTAATTCTGAACAGAGGGAGTA 59.643 44.000 4.72 0.00 38.88 2.59
1888 5633 9.041354 AGAGGGAGTAAATATTATAGCTCCTTG 57.959 37.037 18.57 0.00 41.46 3.61
1923 5668 4.916870 CGTTGTCTGATAACGTGATAGGA 58.083 43.478 25.28 0.00 44.15 2.94
2103 6056 4.345288 CGTGTTGATTTAGTGCATCCATG 58.655 43.478 0.00 0.00 0.00 3.66
2126 6079 0.171455 GTGCTGACGTGTAGAGGAGG 59.829 60.000 0.00 0.00 0.00 4.30
2180 6133 6.422701 CGACAGTCAGACCTGTTGTTATTTTA 59.577 38.462 0.41 0.00 45.46 1.52
2229 6182 2.999063 GCCACAAATGCTGGGCCT 60.999 61.111 4.53 0.00 36.11 5.19
2235 6188 2.035066 CACAAATGCTGGGCCTATAAGC 59.965 50.000 4.53 5.76 37.46 3.09
2243 6196 3.290710 CTGGGCCTATAAGCAACATGTT 58.709 45.455 4.92 4.92 0.00 2.71
2251 6212 6.513393 GCCTATAAGCAACATGTTGATGTACC 60.513 42.308 36.65 20.15 42.30 3.34
2263 6224 4.887071 TGTTGATGTACCAGCAGTTTTCTT 59.113 37.500 0.00 0.00 29.47 2.52
2290 6251 6.991938 TGAAACCCTGGATTTTCTGTATTTG 58.008 36.000 16.76 0.00 33.61 2.32
2322 6283 0.823460 CAACTGGTGGGTGTTTGCTT 59.177 50.000 0.00 0.00 0.00 3.91
2585 7005 1.694693 GCAGGGGATGTCCTAGGGTTA 60.695 57.143 9.46 0.00 34.92 2.85
2686 7106 6.322201 CCTATATGCACTTTCCATTTCTTGGT 59.678 38.462 0.00 0.00 46.52 3.67
2745 7165 3.104512 ACCATATCTTCACCCAACGAGA 58.895 45.455 0.00 0.00 0.00 4.04
2765 7185 1.077663 ACCCCCTAACTCTTCCGTACA 59.922 52.381 0.00 0.00 0.00 2.90
2783 7203 4.026393 CGTACATCACGTTTCTTGTTGTCA 60.026 41.667 0.00 0.00 45.82 3.58
2800 7220 3.311990 TGTCATATCATGAGCCTCCTGT 58.688 45.455 0.09 0.00 40.53 4.00
2810 7230 2.674220 GCCTCCTGTCCCTTCCCAG 61.674 68.421 0.00 0.00 0.00 4.45
2811 7231 2.674220 CCTCCTGTCCCTTCCCAGC 61.674 68.421 0.00 0.00 0.00 4.85
2813 7233 3.322466 CCTGTCCCTTCCCAGCGT 61.322 66.667 0.00 0.00 0.00 5.07
2814 7234 2.046892 CTGTCCCTTCCCAGCGTG 60.047 66.667 0.00 0.00 0.00 5.34
2815 7235 3.612247 CTGTCCCTTCCCAGCGTGG 62.612 68.421 0.00 0.00 37.25 4.94
2818 7238 4.351054 CCCTTCCCAGCGTGGCTT 62.351 66.667 0.00 0.00 36.40 4.35
2819 7239 3.058160 CCTTCCCAGCGTGGCTTG 61.058 66.667 0.00 0.00 36.40 4.01
2820 7240 3.058160 CTTCCCAGCGTGGCTTGG 61.058 66.667 1.50 1.50 42.04 3.61
2821 7241 3.551496 CTTCCCAGCGTGGCTTGGA 62.551 63.158 6.35 6.35 46.55 3.53
2822 7242 3.565214 TCCCAGCGTGGCTTGGAA 61.565 61.111 7.87 0.00 45.50 3.53
2824 7244 2.281761 CCAGCGTGGCTTGGAAGT 60.282 61.111 0.00 0.00 36.40 3.01
2826 7246 1.302033 CAGCGTGGCTTGGAAGTCT 60.302 57.895 0.00 0.00 36.40 3.24
2828 7248 1.004440 GCGTGGCTTGGAAGTCTCT 60.004 57.895 0.00 0.00 0.00 3.10
2829 7249 1.016653 GCGTGGCTTGGAAGTCTCTC 61.017 60.000 0.00 0.00 0.00 3.20
2830 7250 0.734253 CGTGGCTTGGAAGTCTCTCG 60.734 60.000 0.00 0.00 0.00 4.04
2833 7253 1.448717 GCTTGGAAGTCTCTCGGCC 60.449 63.158 0.00 0.00 0.00 6.13
2834 7254 1.219393 CTTGGAAGTCTCTCGGCCC 59.781 63.158 0.00 0.00 0.00 5.80
2835 7255 1.229209 TTGGAAGTCTCTCGGCCCT 60.229 57.895 0.00 0.00 0.00 5.19
2837 7257 2.726351 GGAAGTCTCTCGGCCCTGG 61.726 68.421 0.00 0.00 0.00 4.45
2838 7258 1.985116 GAAGTCTCTCGGCCCTGGT 60.985 63.158 0.00 0.00 0.00 4.00
2839 7259 1.950973 GAAGTCTCTCGGCCCTGGTC 61.951 65.000 0.00 0.00 0.00 4.02
2840 7260 3.462678 GTCTCTCGGCCCTGGTCC 61.463 72.222 0.00 0.00 0.00 4.46
2841 7261 3.673597 TCTCTCGGCCCTGGTCCT 61.674 66.667 0.00 0.00 0.00 3.85
2980 8471 2.797156 CCTCTCACAACACTGTTTCTCG 59.203 50.000 0.00 0.00 31.64 4.04
3018 8509 2.882143 AGTCCCCTCCCCTCCCTT 60.882 66.667 0.00 0.00 0.00 3.95
3040 8531 6.094603 CCTTCTTCATCCATAAGTGTCCTTTG 59.905 42.308 0.00 0.00 31.89 2.77
3099 8590 1.067582 GTAGGGATTGACTCGGGCG 59.932 63.158 0.00 0.00 0.00 6.13
3151 8642 4.746466 TCCATTTCCCAACACCAGTAATT 58.254 39.130 0.00 0.00 0.00 1.40
3215 8706 9.283768 TGAATCCAAAATAATACATGTCGCTAT 57.716 29.630 0.00 0.00 0.00 2.97
3216 8707 9.546909 GAATCCAAAATAATACATGTCGCTATG 57.453 33.333 0.00 0.00 0.00 2.23
3229 8720 7.032580 ACATGTCGCTATGATAAAGAGATAGC 58.967 38.462 0.00 0.00 40.73 2.97
3238 8729 2.540265 AAAGAGATAGCATGGGAGCG 57.460 50.000 0.00 0.00 40.15 5.03
3243 8734 2.289002 GAGATAGCATGGGAGCGTTTTG 59.711 50.000 0.00 0.00 40.15 2.44
3254 8745 2.844451 GCGTTTTGCTGCACTCCCA 61.844 57.895 0.00 0.00 41.73 4.37
3255 8746 1.959085 CGTTTTGCTGCACTCCCAT 59.041 52.632 0.00 0.00 0.00 4.00
3258 8749 1.068055 GTTTTGCTGCACTCCCATCAG 60.068 52.381 0.00 0.00 0.00 2.90
3277 8768 8.742777 CCCATCAGAAAATGATTCTTCTACAAA 58.257 33.333 3.49 0.00 46.97 2.83
3441 8976 7.636326 AGTTAACGTTTCTAACAGACAATTGG 58.364 34.615 5.91 0.00 32.66 3.16
3545 9110 5.180868 ACAGTCTGAGATTTGAACAATGAGC 59.819 40.000 6.91 0.00 0.00 4.26
4631 10516 5.212532 AGCTCTGAGTATGATTGATGACC 57.787 43.478 6.53 0.00 0.00 4.02
4705 10590 7.534085 TTACGACATGAGGATAACAAATGTC 57.466 36.000 0.00 4.41 35.08 3.06
5137 11022 0.238289 CGAAATTGCTGGAGCGTGTT 59.762 50.000 0.00 0.00 45.83 3.32
5205 11091 5.048713 CGAGGCCACTGTAGAATTTTTCTTT 60.049 40.000 5.01 0.00 41.14 2.52
5252 11141 4.696899 TGAAGATGTCGTTATCTCGTGT 57.303 40.909 5.00 0.00 36.42 4.49
5256 11145 7.085746 TGAAGATGTCGTTATCTCGTGTAAAA 58.914 34.615 5.00 0.00 36.42 1.52
5261 11202 6.207928 TGTCGTTATCTCGTGTAAAACTTGA 58.792 36.000 0.00 0.00 0.00 3.02
5273 11214 4.454161 TGTAAAACTTGATGTCACCGGATG 59.546 41.667 9.46 2.48 0.00 3.51
5274 11215 3.417069 AAACTTGATGTCACCGGATGA 57.583 42.857 9.46 5.40 33.79 2.92
5275 11216 3.417069 AACTTGATGTCACCGGATGAA 57.583 42.857 9.46 0.30 39.72 2.57
5367 11330 3.612955 GCTGCTAATACGATGGAGGAGTC 60.613 52.174 0.00 0.00 30.68 3.36
5398 11365 8.243426 TCAATTATTTTCATGTTGCTCAGGTAC 58.757 33.333 0.00 0.00 0.00 3.34
5400 11367 7.759489 TTATTTTCATGTTGCTCAGGTACTT 57.241 32.000 0.00 0.00 34.60 2.24
5579 11670 1.458398 TGGGGTACAATGCAATGTCG 58.542 50.000 11.47 0.00 34.75 4.35
5735 12486 6.828273 TGTATAAGCTGCAGTTGGAATTGTAT 59.172 34.615 16.64 4.86 0.00 2.29
5736 12487 4.708726 AAGCTGCAGTTGGAATTGTATC 57.291 40.909 16.64 0.00 0.00 2.24
5764 12515 3.308438 TTCCTAGTGACAGCGGTTAAC 57.692 47.619 0.00 0.00 0.00 2.01
5797 12551 3.327757 ACAAAGAGATGTGCTCCCTGTTA 59.672 43.478 0.00 0.00 45.10 2.41
5806 12560 4.290093 TGTGCTCCCTGTTATGAGTCTAT 58.710 43.478 0.00 0.00 0.00 1.98
5974 12794 5.009010 AGTTTGTAATGGAAAGTGTGCTCAG 59.991 40.000 0.00 0.00 0.00 3.35
5976 12796 3.814842 TGTAATGGAAAGTGTGCTCAGTG 59.185 43.478 0.00 0.00 0.00 3.66
6001 12821 2.746269 TGACGGAACTAACTGAAACCG 58.254 47.619 0.00 0.00 44.77 4.44
6002 12822 1.458445 GACGGAACTAACTGAAACCGC 59.542 52.381 0.00 0.00 43.36 5.68
6021 12841 5.041940 ACCGCTCTAATTTATTCTCGTGTC 58.958 41.667 0.00 0.00 0.00 3.67
6024 12844 5.330866 CGCTCTAATTTATTCTCGTGTCGTG 60.331 44.000 0.00 0.00 0.00 4.35
6041 12861 4.082523 GGCAGCACAGGCCGAGTA 62.083 66.667 0.00 0.00 42.39 2.59
6042 12862 2.047274 GCAGCACAGGCCGAGTAA 60.047 61.111 0.00 0.00 42.56 2.24
6043 12863 1.671054 GCAGCACAGGCCGAGTAAA 60.671 57.895 0.00 0.00 42.56 2.01
6044 12864 1.026718 GCAGCACAGGCCGAGTAAAT 61.027 55.000 0.00 0.00 42.56 1.40
6045 12865 1.453155 CAGCACAGGCCGAGTAAATT 58.547 50.000 0.00 0.00 42.56 1.82
6046 12866 1.131126 CAGCACAGGCCGAGTAAATTG 59.869 52.381 0.00 0.00 42.56 2.32
6048 12868 1.164411 CACAGGCCGAGTAAATTGCA 58.836 50.000 0.00 0.00 0.00 4.08
6049 12869 1.135689 CACAGGCCGAGTAAATTGCAC 60.136 52.381 0.00 0.00 0.00 4.57
6051 12871 1.539388 CAGGCCGAGTAAATTGCACAA 59.461 47.619 0.00 0.00 0.00 3.33
6053 12873 2.625790 AGGCCGAGTAAATTGCACAAAA 59.374 40.909 0.00 0.00 0.00 2.44
6054 12874 2.729360 GGCCGAGTAAATTGCACAAAAC 59.271 45.455 0.00 0.00 0.00 2.43
6055 12875 2.729360 GCCGAGTAAATTGCACAAAACC 59.271 45.455 0.00 0.00 0.00 3.27
6056 12876 3.797184 GCCGAGTAAATTGCACAAAACCA 60.797 43.478 0.00 0.00 0.00 3.67
6057 12877 3.733727 CCGAGTAAATTGCACAAAACCAC 59.266 43.478 0.00 0.00 0.00 4.16
6058 12878 3.733727 CGAGTAAATTGCACAAAACCACC 59.266 43.478 0.00 0.00 0.00 4.61
6059 12879 4.688021 GAGTAAATTGCACAAAACCACCA 58.312 39.130 0.00 0.00 0.00 4.17
6060 12880 4.692228 AGTAAATTGCACAAAACCACCAG 58.308 39.130 0.00 0.00 0.00 4.00
6062 12882 3.625649 AATTGCACAAAACCACCAGTT 57.374 38.095 0.00 0.00 41.81 3.16
6073 12893 3.223674 ACCACCAGTTTGAAGGTTAGG 57.776 47.619 0.00 0.00 35.52 2.69
6075 12895 3.053170 ACCACCAGTTTGAAGGTTAGGTT 60.053 43.478 0.00 0.00 32.06 3.50
6076 12896 3.958147 CCACCAGTTTGAAGGTTAGGTTT 59.042 43.478 0.00 0.00 35.52 3.27
6079 12899 3.550030 CCAGTTTGAAGGTTAGGTTTGCG 60.550 47.826 0.00 0.00 0.00 4.85
6080 12900 3.314080 CAGTTTGAAGGTTAGGTTTGCGA 59.686 43.478 0.00 0.00 0.00 5.10
6081 12901 3.949113 AGTTTGAAGGTTAGGTTTGCGAA 59.051 39.130 0.00 0.00 0.00 4.70
6082 12902 4.583073 AGTTTGAAGGTTAGGTTTGCGAAT 59.417 37.500 0.00 0.00 0.00 3.34
6083 12903 5.766174 AGTTTGAAGGTTAGGTTTGCGAATA 59.234 36.000 0.00 0.00 0.00 1.75
6084 12904 6.263617 AGTTTGAAGGTTAGGTTTGCGAATAA 59.736 34.615 0.00 0.00 0.00 1.40
6085 12905 5.616488 TGAAGGTTAGGTTTGCGAATAAC 57.384 39.130 2.67 2.67 0.00 1.89
6086 12906 5.064558 TGAAGGTTAGGTTTGCGAATAACA 58.935 37.500 10.82 0.00 31.25 2.41
6089 12909 5.949735 AGGTTAGGTTTGCGAATAACATTG 58.050 37.500 10.82 0.00 31.25 2.82
6091 12911 6.655848 AGGTTAGGTTTGCGAATAACATTGTA 59.344 34.615 10.82 0.00 31.25 2.41
6092 12912 7.175293 AGGTTAGGTTTGCGAATAACATTGTAA 59.825 33.333 10.82 0.00 31.25 2.41
6094 12914 9.991388 GTTAGGTTTGCGAATAACATTGTAATA 57.009 29.630 5.62 0.00 0.00 0.98
6095 12915 9.991388 TTAGGTTTGCGAATAACATTGTAATAC 57.009 29.630 0.00 0.00 0.00 1.89
6096 12916 7.184106 AGGTTTGCGAATAACATTGTAATACG 58.816 34.615 0.00 0.00 0.00 3.06
6098 12918 7.482428 GGTTTGCGAATAACATTGTAATACGTT 59.518 33.333 0.00 0.00 0.00 3.99
6099 12919 8.842777 GTTTGCGAATAACATTGTAATACGTTT 58.157 29.630 0.00 0.00 0.00 3.60
6101 12921 8.951954 TGCGAATAACATTGTAATACGTTTTT 57.048 26.923 0.00 0.00 0.00 1.94
6126 13017 2.610374 GCAGAAAACACCACGTCTTGTA 59.390 45.455 0.00 0.00 0.00 2.41
6128 13019 4.449743 GCAGAAAACACCACGTCTTGTATA 59.550 41.667 0.00 0.00 0.00 1.47
6130 13021 6.348213 GCAGAAAACACCACGTCTTGTATAAT 60.348 38.462 0.00 0.00 0.00 1.28
6132 13023 8.879759 CAGAAAACACCACGTCTTGTATAATAT 58.120 33.333 0.00 0.00 0.00 1.28
6133 13024 9.444600 AGAAAACACCACGTCTTGTATAATATT 57.555 29.630 0.00 0.00 0.00 1.28
6138 13029 7.966204 ACACCACGTCTTGTATAATATTTTTGC 59.034 33.333 0.00 0.00 0.00 3.68
6139 13030 7.965655 CACCACGTCTTGTATAATATTTTTGCA 59.034 33.333 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.195698 GGTTGCTCGCGATGGGAC 61.196 66.667 10.36 6.38 0.00 4.46
2 3 3.700970 TGGTTGCTCGCGATGGGA 61.701 61.111 10.36 0.00 0.00 4.37
6 7 3.121030 GCTGTGGTTGCTCGCGAT 61.121 61.111 10.36 0.00 0.00 4.58
48 49 2.515523 CAGATCCGCCTGCCCAAG 60.516 66.667 0.00 0.00 0.00 3.61
49 50 3.008517 TCAGATCCGCCTGCCCAA 61.009 61.111 0.00 0.00 34.28 4.12
50 51 3.473647 CTCAGATCCGCCTGCCCA 61.474 66.667 0.00 0.00 34.28 5.36
51 52 3.157252 TCTCAGATCCGCCTGCCC 61.157 66.667 0.00 0.00 34.28 5.36
53 54 1.227205 CTGTCTCAGATCCGCCTGC 60.227 63.158 0.00 0.00 32.44 4.85
61 62 2.060980 GGCGGGGTCTGTCTCAGAT 61.061 63.158 2.80 0.00 42.73 2.90
62 63 2.680352 GGCGGGGTCTGTCTCAGA 60.680 66.667 0.00 0.00 38.25 3.27
63 64 2.997315 TGGCGGGGTCTGTCTCAG 60.997 66.667 0.00 0.00 0.00 3.35
64 65 2.997315 CTGGCGGGGTCTGTCTCA 60.997 66.667 0.00 0.00 0.00 3.27
319 320 3.780173 GCCTCTCCGCTGGCTTCT 61.780 66.667 0.00 0.00 45.26 2.85
329 330 3.682292 AAATCACGGCCGCCTCTCC 62.682 63.158 28.58 0.00 0.00 3.71
330 331 2.125106 AAATCACGGCCGCCTCTC 60.125 61.111 28.58 0.00 0.00 3.20
331 332 2.436646 CAAATCACGGCCGCCTCT 60.437 61.111 28.58 1.31 0.00 3.69
333 334 2.436646 CTCAAATCACGGCCGCCT 60.437 61.111 28.58 7.03 0.00 5.52
334 335 4.179579 GCTCAAATCACGGCCGCC 62.180 66.667 28.58 0.00 0.00 6.13
335 336 4.520846 CGCTCAAATCACGGCCGC 62.521 66.667 28.58 3.86 0.00 6.53
336 337 3.864686 CCGCTCAAATCACGGCCG 61.865 66.667 26.86 26.86 40.55 6.13
342 343 2.745884 CCACCGCCGCTCAAATCA 60.746 61.111 0.00 0.00 0.00 2.57
343 344 4.179579 GCCACCGCCGCTCAAATC 62.180 66.667 0.00 0.00 0.00 2.17
395 396 2.524394 TATGCTCCCTCCCGCTCC 60.524 66.667 0.00 0.00 0.00 4.70
396 397 3.055580 CTATGCTCCCTCCCGCTC 58.944 66.667 0.00 0.00 0.00 5.03
397 398 3.237741 GCTATGCTCCCTCCCGCT 61.238 66.667 0.00 0.00 0.00 5.52
398 399 4.671569 CGCTATGCTCCCTCCCGC 62.672 72.222 0.00 0.00 0.00 6.13
400 401 3.055580 CTCGCTATGCTCCCTCCC 58.944 66.667 0.00 0.00 0.00 4.30
401 402 2.341911 GCTCGCTATGCTCCCTCC 59.658 66.667 0.00 0.00 0.00 4.30
402 403 2.341911 GGCTCGCTATGCTCCCTC 59.658 66.667 0.00 0.00 0.00 4.30
403 404 2.978298 TACGGCTCGCTATGCTCCCT 62.978 60.000 0.00 0.00 0.00 4.20
404 405 2.083835 TTACGGCTCGCTATGCTCCC 62.084 60.000 0.00 0.00 0.00 4.30
405 406 0.038159 ATTACGGCTCGCTATGCTCC 60.038 55.000 0.00 0.00 0.00 4.70
406 407 2.631418 TATTACGGCTCGCTATGCTC 57.369 50.000 0.00 0.00 0.00 4.26
408 409 4.663636 AAAATATTACGGCTCGCTATGC 57.336 40.909 0.00 0.00 0.00 3.14
412 413 8.448615 GGAATAATAAAAATATTACGGCTCGCT 58.551 33.333 0.00 0.00 0.00 4.93
428 429 9.540538 TGATGGGAACTCAAAAGGAATAATAAA 57.459 29.630 0.00 0.00 0.00 1.40
429 430 9.189156 CTGATGGGAACTCAAAAGGAATAATAA 57.811 33.333 0.00 0.00 0.00 1.40
431 432 6.608808 CCTGATGGGAACTCAAAAGGAATAAT 59.391 38.462 0.00 0.00 37.23 1.28
433 434 5.509498 CCTGATGGGAACTCAAAAGGAATA 58.491 41.667 0.00 0.00 37.23 1.75
434 435 4.347607 CCTGATGGGAACTCAAAAGGAAT 58.652 43.478 0.00 0.00 37.23 3.01
435 436 3.766545 CCTGATGGGAACTCAAAAGGAA 58.233 45.455 0.00 0.00 37.23 3.36
438 439 2.517959 TGCCTGATGGGAACTCAAAAG 58.482 47.619 0.00 0.00 37.23 2.27
439 440 2.673775 TGCCTGATGGGAACTCAAAA 57.326 45.000 0.00 0.00 37.23 2.44
440 441 2.905415 ATGCCTGATGGGAACTCAAA 57.095 45.000 0.00 0.00 37.19 2.69
441 442 2.905415 AATGCCTGATGGGAACTCAA 57.095 45.000 0.00 0.00 37.19 3.02
444 445 2.893424 ACAAAATGCCTGATGGGAACT 58.107 42.857 0.00 0.00 37.19 3.01
448 449 4.214310 TGGTATACAAAATGCCTGATGGG 58.786 43.478 5.01 0.00 38.36 4.00
449 450 5.535783 TCATGGTATACAAAATGCCTGATGG 59.464 40.000 5.01 0.00 0.00 3.51
451 452 6.040842 GGTTCATGGTATACAAAATGCCTGAT 59.959 38.462 5.01 0.00 0.00 2.90
452 453 5.359576 GGTTCATGGTATACAAAATGCCTGA 59.640 40.000 5.01 0.00 0.00 3.86
454 455 5.268387 TGGTTCATGGTATACAAAATGCCT 58.732 37.500 5.01 0.00 0.00 4.75
455 456 5.590530 TGGTTCATGGTATACAAAATGCC 57.409 39.130 5.01 4.29 0.00 4.40
456 457 6.804677 TCATGGTTCATGGTATACAAAATGC 58.195 36.000 5.01 0.00 41.66 3.56
457 458 8.084073 GGATCATGGTTCATGGTATACAAAATG 58.916 37.037 5.01 5.76 41.66 2.32
458 459 7.233348 GGGATCATGGTTCATGGTATACAAAAT 59.767 37.037 5.01 0.00 41.66 1.82
462 463 4.042809 GGGGATCATGGTTCATGGTATACA 59.957 45.833 5.01 0.00 41.66 2.29
463 464 4.042809 TGGGGATCATGGTTCATGGTATAC 59.957 45.833 7.88 0.00 41.66 1.47
465 466 3.062889 TGGGGATCATGGTTCATGGTAT 58.937 45.455 7.88 0.00 41.66 2.73
467 468 1.307878 TGGGGATCATGGTTCATGGT 58.692 50.000 7.88 0.79 41.66 3.55
469 470 6.482898 TTAATTTGGGGATCATGGTTCATG 57.517 37.500 0.00 1.76 42.60 3.07
472 473 8.650490 ACATTATTAATTTGGGGATCATGGTTC 58.350 33.333 0.00 0.00 0.00 3.62
473 474 8.565780 ACATTATTAATTTGGGGATCATGGTT 57.434 30.769 0.00 0.00 0.00 3.67
474 475 9.312904 CTACATTATTAATTTGGGGATCATGGT 57.687 33.333 0.00 0.00 0.00 3.55
475 476 9.532494 TCTACATTATTAATTTGGGGATCATGG 57.468 33.333 0.00 0.00 0.00 3.66
518 519 9.304731 CAGAAAATGACACAAAAGATCTTCAAA 57.695 29.630 8.78 0.00 0.00 2.69
519 520 7.436080 GCAGAAAATGACACAAAAGATCTTCAA 59.564 33.333 8.78 0.00 0.00 2.69
520 521 6.919662 GCAGAAAATGACACAAAAGATCTTCA 59.080 34.615 8.78 1.35 0.00 3.02
521 522 6.919662 TGCAGAAAATGACACAAAAGATCTTC 59.080 34.615 8.78 0.00 0.00 2.87
522 523 6.808829 TGCAGAAAATGACACAAAAGATCTT 58.191 32.000 0.88 0.88 0.00 2.40
523 524 6.040166 ACTGCAGAAAATGACACAAAAGATCT 59.960 34.615 23.35 0.00 0.00 2.75
525 526 6.152932 ACTGCAGAAAATGACACAAAAGAT 57.847 33.333 23.35 0.00 0.00 2.40
527 528 5.806502 TCAACTGCAGAAAATGACACAAAAG 59.193 36.000 23.35 0.00 0.00 2.27
528 529 5.718146 TCAACTGCAGAAAATGACACAAAA 58.282 33.333 23.35 0.00 0.00 2.44
529 530 5.321959 TCAACTGCAGAAAATGACACAAA 57.678 34.783 23.35 0.00 0.00 2.83
530 531 4.979943 TCAACTGCAGAAAATGACACAA 57.020 36.364 23.35 0.00 0.00 3.33
531 532 4.862350 CATCAACTGCAGAAAATGACACA 58.138 39.130 23.35 0.00 0.00 3.72
556 3151 2.829720 ACACTGACACGCTTTATAGGGA 59.170 45.455 4.28 0.00 37.73 4.20
557 3152 3.247006 ACACTGACACGCTTTATAGGG 57.753 47.619 0.00 0.00 40.02 3.53
558 3153 4.209288 GCATACACTGACACGCTTTATAGG 59.791 45.833 0.00 0.00 0.00 2.57
562 3157 3.033368 TGCATACACTGACACGCTTTA 57.967 42.857 0.00 0.00 0.00 1.85
563 3158 1.877637 TGCATACACTGACACGCTTT 58.122 45.000 0.00 0.00 0.00 3.51
564 3159 2.099141 ATGCATACACTGACACGCTT 57.901 45.000 0.00 0.00 0.00 4.68
565 3160 2.099141 AATGCATACACTGACACGCT 57.901 45.000 0.00 0.00 0.00 5.07
566 3161 2.670905 TGTAATGCATACACTGACACGC 59.329 45.455 0.00 0.00 39.60 5.34
578 3173 5.786311 ACAAATTTCAGCTGTGTAATGCAT 58.214 33.333 14.67 0.00 0.00 3.96
580 3175 6.237648 GCATACAAATTTCAGCTGTGTAATGC 60.238 38.462 14.67 18.36 0.00 3.56
581 3176 6.254157 GGCATACAAATTTCAGCTGTGTAATG 59.746 38.462 14.67 13.83 0.00 1.90
582 3177 6.071447 TGGCATACAAATTTCAGCTGTGTAAT 60.071 34.615 14.67 9.33 0.00 1.89
583 3178 5.242615 TGGCATACAAATTTCAGCTGTGTAA 59.757 36.000 14.67 7.33 0.00 2.41
585 3180 3.573538 TGGCATACAAATTTCAGCTGTGT 59.426 39.130 14.67 12.65 0.00 3.72
586 3181 4.171005 CTGGCATACAAATTTCAGCTGTG 58.829 43.478 14.67 6.67 0.00 3.66
589 3184 4.813027 CAACTGGCATACAAATTTCAGCT 58.187 39.130 0.00 0.00 0.00 4.24
590 3185 3.368843 GCAACTGGCATACAAATTTCAGC 59.631 43.478 0.00 0.00 43.97 4.26
591 3186 3.609373 CGCAACTGGCATACAAATTTCAG 59.391 43.478 0.00 0.00 45.17 3.02
592 3187 3.573598 CGCAACTGGCATACAAATTTCA 58.426 40.909 0.00 0.00 45.17 2.69
594 3189 2.336667 GCGCAACTGGCATACAAATTT 58.663 42.857 0.30 0.00 45.17 1.82
595 3190 1.732077 CGCGCAACTGGCATACAAATT 60.732 47.619 8.75 0.00 45.17 1.82
596 3191 0.179166 CGCGCAACTGGCATACAAAT 60.179 50.000 8.75 0.00 45.17 2.32
597 3192 1.208870 CGCGCAACTGGCATACAAA 59.791 52.632 8.75 0.00 45.17 2.83
599 3194 2.358125 ACGCGCAACTGGCATACA 60.358 55.556 5.73 0.00 45.17 2.29
600 3195 2.399611 GACGCGCAACTGGCATAC 59.600 61.111 5.73 0.00 45.17 2.39
605 3200 3.036084 AACTCGACGCGCAACTGG 61.036 61.111 5.73 0.00 0.00 4.00
606 3201 2.168621 CAACTCGACGCGCAACTG 59.831 61.111 5.73 0.00 0.00 3.16
607 3202 2.279252 ACAACTCGACGCGCAACT 60.279 55.556 5.73 0.00 0.00 3.16
623 3787 5.712217 CATCACAAATTGATTGGATGCAC 57.288 39.130 0.00 0.00 42.87 4.57
647 3812 6.739331 TGAAATGTTTAGGGTGTGGAAATT 57.261 33.333 0.00 0.00 0.00 1.82
675 3840 9.565213 GTCTACATACATTCGTAAGTTGTAGTT 57.435 33.333 13.56 0.00 39.21 2.24
676 3841 8.954350 AGTCTACATACATTCGTAAGTTGTAGT 58.046 33.333 13.56 0.00 39.21 2.73
677 3842 9.784680 AAGTCTACATACATTCGTAAGTTGTAG 57.215 33.333 0.00 0.00 39.21 2.74
706 3871 9.677567 GCAAAGTGAGTGAATCTACATTTTAAA 57.322 29.630 0.00 0.00 0.00 1.52
707 3872 9.066892 AGCAAAGTGAGTGAATCTACATTTTAA 57.933 29.630 0.00 0.00 0.00 1.52
708 3873 8.621532 AGCAAAGTGAGTGAATCTACATTTTA 57.378 30.769 0.00 0.00 0.00 1.52
709 3874 7.516198 AGCAAAGTGAGTGAATCTACATTTT 57.484 32.000 0.00 0.00 0.00 1.82
710 3875 7.516198 AAGCAAAGTGAGTGAATCTACATTT 57.484 32.000 0.00 0.00 0.00 2.32
711 3876 6.128445 CGAAGCAAAGTGAGTGAATCTACATT 60.128 38.462 0.00 0.00 0.00 2.71
712 3877 5.349817 CGAAGCAAAGTGAGTGAATCTACAT 59.650 40.000 0.00 0.00 0.00 2.29
713 3878 4.686091 CGAAGCAAAGTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
714 3879 4.686554 ACGAAGCAAAGTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
715 3880 4.883083 ACGAAGCAAAGTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
716 3881 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
717 3882 5.120830 ACATACGAAGCAAAGTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
718 3883 4.997395 ACATACGAAGCAAAGTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
719 3884 4.377021 ACATACGAAGCAAAGTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
720 3885 3.990092 ACATACGAAGCAAAGTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
721 3886 4.923871 ACTACATACGAAGCAAAGTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
722 3887 5.135508 ACTACATACGAAGCAAAGTGAGT 57.864 39.130 0.00 0.00 0.00 3.41
723 3888 7.757097 ATAACTACATACGAAGCAAAGTGAG 57.243 36.000 0.00 0.00 0.00 3.51
724 3889 8.440059 CAAATAACTACATACGAAGCAAAGTGA 58.560 33.333 0.00 0.00 0.00 3.41
725 3890 8.227791 ACAAATAACTACATACGAAGCAAAGTG 58.772 33.333 0.00 0.00 0.00 3.16
726 3891 8.319143 ACAAATAACTACATACGAAGCAAAGT 57.681 30.769 0.00 0.00 0.00 2.66
727 3892 9.051027 CAACAAATAACTACATACGAAGCAAAG 57.949 33.333 0.00 0.00 0.00 2.77
728 3893 8.775527 TCAACAAATAACTACATACGAAGCAAA 58.224 29.630 0.00 0.00 0.00 3.68
729 3894 8.312896 TCAACAAATAACTACATACGAAGCAA 57.687 30.769 0.00 0.00 0.00 3.91
730 3895 7.892778 TCAACAAATAACTACATACGAAGCA 57.107 32.000 0.00 0.00 0.00 3.91
731 3896 9.769093 ATTTCAACAAATAACTACATACGAAGC 57.231 29.630 0.00 0.00 29.81 3.86
762 3927 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
763 3928 9.902196 TCCTCCGTTTTTAAATATTTGTCTTTC 57.098 29.630 11.05 0.00 0.00 2.62
765 3930 9.908152 CTTCCTCCGTTTTTAAATATTTGTCTT 57.092 29.630 11.05 0.00 0.00 3.01
766 3931 9.074576 ACTTCCTCCGTTTTTAAATATTTGTCT 57.925 29.630 11.05 0.00 0.00 3.41
775 3940 9.947433 TGAATCTATACTTCCTCCGTTTTTAAA 57.053 29.630 0.00 0.00 0.00 1.52
776 3941 9.374838 GTGAATCTATACTTCCTCCGTTTTTAA 57.625 33.333 0.00 0.00 0.00 1.52
777 3942 8.755977 AGTGAATCTATACTTCCTCCGTTTTTA 58.244 33.333 0.00 0.00 0.00 1.52
778 3943 7.621796 AGTGAATCTATACTTCCTCCGTTTTT 58.378 34.615 0.00 0.00 0.00 1.94
779 3944 7.093465 TGAGTGAATCTATACTTCCTCCGTTTT 60.093 37.037 0.00 0.00 0.00 2.43
780 3945 6.380274 TGAGTGAATCTATACTTCCTCCGTTT 59.620 38.462 0.00 0.00 0.00 3.60
781 3946 5.892119 TGAGTGAATCTATACTTCCTCCGTT 59.108 40.000 0.00 0.00 0.00 4.44
782 3947 5.299782 GTGAGTGAATCTATACTTCCTCCGT 59.700 44.000 0.00 0.00 0.00 4.69
783 3948 5.533154 AGTGAGTGAATCTATACTTCCTCCG 59.467 44.000 0.00 0.00 0.00 4.63
784 3949 6.969993 AGTGAGTGAATCTATACTTCCTCC 57.030 41.667 0.00 0.00 0.00 4.30
785 3950 8.254508 ACAAAGTGAGTGAATCTATACTTCCTC 58.745 37.037 0.00 0.00 34.66 3.71
786 3951 8.140112 ACAAAGTGAGTGAATCTATACTTCCT 57.860 34.615 0.00 0.00 34.66 3.36
787 3952 8.779354 AACAAAGTGAGTGAATCTATACTTCC 57.221 34.615 0.00 0.00 34.66 3.46
836 4001 9.496873 GCATCAACTATCTACTACTTCTAGAGA 57.503 37.037 0.00 0.00 0.00 3.10
837 4002 9.502091 AGCATCAACTATCTACTACTTCTAGAG 57.498 37.037 0.00 0.00 0.00 2.43
838 4003 9.854668 AAGCATCAACTATCTACTACTTCTAGA 57.145 33.333 0.00 0.00 0.00 2.43
840 4005 9.069082 GGAAGCATCAACTATCTACTACTTCTA 57.931 37.037 0.00 0.00 32.44 2.10
841 4006 7.014808 GGGAAGCATCAACTATCTACTACTTCT 59.985 40.741 0.00 0.00 32.44 2.85
842 4007 7.014808 AGGGAAGCATCAACTATCTACTACTTC 59.985 40.741 0.00 0.00 0.00 3.01
843 4008 6.841755 AGGGAAGCATCAACTATCTACTACTT 59.158 38.462 0.00 0.00 0.00 2.24
844 4009 6.266558 CAGGGAAGCATCAACTATCTACTACT 59.733 42.308 0.00 0.00 0.00 2.57
845 4010 6.041069 ACAGGGAAGCATCAACTATCTACTAC 59.959 42.308 0.00 0.00 0.00 2.73
846 4011 6.136857 ACAGGGAAGCATCAACTATCTACTA 58.863 40.000 0.00 0.00 0.00 1.82
847 4012 4.965532 ACAGGGAAGCATCAACTATCTACT 59.034 41.667 0.00 0.00 0.00 2.57
848 4013 5.283457 ACAGGGAAGCATCAACTATCTAC 57.717 43.478 0.00 0.00 0.00 2.59
854 4019 4.307032 ACATTACAGGGAAGCATCAACT 57.693 40.909 0.00 0.00 0.00 3.16
862 4027 6.881065 TCAGATGAGAAAACATTACAGGGAAG 59.119 38.462 0.00 0.00 0.00 3.46
864 4029 6.373005 TCAGATGAGAAAACATTACAGGGA 57.627 37.500 0.00 0.00 0.00 4.20
865 4030 7.452880 TTTCAGATGAGAAAACATTACAGGG 57.547 36.000 0.00 0.00 34.77 4.45
891 4056 3.380320 CCTGACCGGTGTTTTCTCTTTTT 59.620 43.478 14.63 0.00 0.00 1.94
893 4058 2.171870 TCCTGACCGGTGTTTTCTCTTT 59.828 45.455 14.63 0.00 0.00 2.52
895 4060 1.420430 TCCTGACCGGTGTTTTCTCT 58.580 50.000 14.63 0.00 0.00 3.10
896 4061 2.249844 TTCCTGACCGGTGTTTTCTC 57.750 50.000 14.63 0.00 0.00 2.87
903 4133 1.076332 GAACGATTTCCTGACCGGTG 58.924 55.000 14.63 0.00 0.00 4.94
906 4136 4.483476 AAAAAGAACGATTTCCTGACCG 57.517 40.909 0.00 0.00 31.28 4.79
909 4139 5.048991 GGCTGTAAAAAGAACGATTTCCTGA 60.049 40.000 0.00 0.00 31.28 3.86
912 4142 5.116069 TGGCTGTAAAAAGAACGATTTCC 57.884 39.130 0.00 0.00 31.28 3.13
922 4152 0.608130 GGGGGCTTGGCTGTAAAAAG 59.392 55.000 0.00 0.00 0.00 2.27
942 4182 1.484240 TGGGGTTTGCTGAGGTTTTTG 59.516 47.619 0.00 0.00 0.00 2.44
953 4193 3.680786 GCGTCCCTTGGGGTTTGC 61.681 66.667 5.78 1.71 44.74 3.68
966 4206 3.723348 GTCCTGTTTGGCCGCGTC 61.723 66.667 4.92 0.00 35.26 5.19
975 4215 1.450211 CTGACCGGGTGTCCTGTTT 59.550 57.895 3.30 0.00 43.78 2.83
1131 4421 4.853142 TAGAGCGGGGCCCACGAT 62.853 66.667 29.81 25.74 0.00 3.73
1308 4601 2.286885 GGAGATTGGGGGTGGGGA 60.287 66.667 0.00 0.00 0.00 4.81
1335 4947 1.462616 CCGATCCAAATCAAGCCACA 58.537 50.000 0.00 0.00 31.76 4.17
1341 4953 1.308047 CGCATCCCGATCCAAATCAA 58.692 50.000 0.00 0.00 40.02 2.57
1367 4979 6.904011 GCATCGAACAGCAATATATATGAAGC 59.096 38.462 0.00 1.89 0.00 3.86
1396 5008 6.909357 ACGAATACGCTAGTACTATGTCAAAC 59.091 38.462 2.33 0.00 43.96 2.93
1446 5070 3.123157 AGAGAATGCGGAATGGAGATG 57.877 47.619 0.00 0.00 0.00 2.90
1457 5134 5.678483 CGAAATTATCCACAAAGAGAATGCG 59.322 40.000 0.00 0.00 28.51 4.73
1546 5230 0.967380 CAATCAGTTGACCCTGGCCC 60.967 60.000 0.00 0.00 37.53 5.80
1549 5233 2.276732 ACACAATCAGTTGACCCTGG 57.723 50.000 0.00 0.00 38.71 4.45
1709 5450 3.710722 AGGAAGGACAGGCAGCGG 61.711 66.667 0.00 0.00 0.00 5.52
1720 5461 3.416156 CTCTTCAAAGTTCCCAGGAAGG 58.584 50.000 0.00 0.00 36.50 3.46
1742 5483 1.081175 GAAAAGGAAGCTGCGGCAC 60.081 57.895 21.93 13.12 41.70 5.01
1767 5508 0.179065 GTAATTCCGAACGGAGGGGG 60.179 60.000 15.34 0.00 46.06 5.40
1768 5509 0.828677 AGTAATTCCGAACGGAGGGG 59.171 55.000 15.34 0.00 46.06 4.79
1769 5510 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1770 5511 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1771 5512 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
1772 5513 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
1773 5514 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
1774 5515 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
1775 5516 7.924103 ATTTTTGTGACAAGTAATTCCGAAC 57.076 32.000 0.00 0.00 0.00 3.95
1776 5517 9.058174 TCTATTTTTGTGACAAGTAATTCCGAA 57.942 29.630 11.28 0.00 0.00 4.30
1777 5518 8.610248 TCTATTTTTGTGACAAGTAATTCCGA 57.390 30.769 11.28 5.76 0.00 4.55
1778 5519 9.277565 CATCTATTTTTGTGACAAGTAATTCCG 57.722 33.333 11.28 4.17 0.00 4.30
1821 5562 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
1822 5563 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
1823 5564 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
1824 5565 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
1825 5566 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1826 5567 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1827 5568 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1828 5569 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1829 5570 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1830 5571 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1831 5572 7.607991 AGAATTACTCGTCCAAGAAATGAATGT 59.392 33.333 0.00 0.00 0.00 2.71
1832 5573 7.907045 CAGAATTACTCGTCCAAGAAATGAATG 59.093 37.037 0.00 0.00 0.00 2.67
1833 5574 7.824289 TCAGAATTACTCGTCCAAGAAATGAAT 59.176 33.333 0.00 0.00 0.00 2.57
1834 5575 7.158697 TCAGAATTACTCGTCCAAGAAATGAA 58.841 34.615 0.00 0.00 0.00 2.57
1835 5576 6.697395 TCAGAATTACTCGTCCAAGAAATGA 58.303 36.000 0.00 0.00 0.00 2.57
1836 5577 6.968131 TCAGAATTACTCGTCCAAGAAATG 57.032 37.500 0.00 0.00 0.00 2.32
1837 5578 6.934645 TGTTCAGAATTACTCGTCCAAGAAAT 59.065 34.615 0.00 0.00 0.00 2.17
1838 5579 6.285224 TGTTCAGAATTACTCGTCCAAGAAA 58.715 36.000 0.00 0.00 0.00 2.52
1839 5580 5.849510 TGTTCAGAATTACTCGTCCAAGAA 58.150 37.500 0.00 0.00 0.00 2.52
1840 5581 5.243060 TCTGTTCAGAATTACTCGTCCAAGA 59.757 40.000 0.00 0.00 0.00 3.02
1841 5582 5.470368 TCTGTTCAGAATTACTCGTCCAAG 58.530 41.667 0.00 0.00 0.00 3.61
1842 5583 5.462530 TCTGTTCAGAATTACTCGTCCAA 57.537 39.130 0.00 0.00 0.00 3.53
1843 5584 4.082190 CCTCTGTTCAGAATTACTCGTCCA 60.082 45.833 4.09 0.00 0.00 4.02
1844 5585 4.425520 CCTCTGTTCAGAATTACTCGTCC 58.574 47.826 4.09 0.00 0.00 4.79
1845 5586 4.158025 TCCCTCTGTTCAGAATTACTCGTC 59.842 45.833 4.09 0.00 0.00 4.20
1846 5587 4.087182 TCCCTCTGTTCAGAATTACTCGT 58.913 43.478 4.09 0.00 0.00 4.18
1847 5588 4.158764 ACTCCCTCTGTTCAGAATTACTCG 59.841 45.833 4.09 0.00 0.00 4.18
1848 5589 5.669164 ACTCCCTCTGTTCAGAATTACTC 57.331 43.478 4.09 0.00 0.00 2.59
1849 5590 7.554959 TTTACTCCCTCTGTTCAGAATTACT 57.445 36.000 4.09 0.00 0.00 2.24
1856 5597 9.646427 GCTATAATATTTACTCCCTCTGTTCAG 57.354 37.037 0.00 0.00 0.00 3.02
1857 5598 9.381038 AGCTATAATATTTACTCCCTCTGTTCA 57.619 33.333 0.00 0.00 0.00 3.18
1858 5599 9.863845 GAGCTATAATATTTACTCCCTCTGTTC 57.136 37.037 0.00 0.00 0.00 3.18
1859 5600 8.817876 GGAGCTATAATATTTACTCCCTCTGTT 58.182 37.037 11.74 0.00 38.18 3.16
1860 5601 8.180844 AGGAGCTATAATATTTACTCCCTCTGT 58.819 37.037 16.19 2.55 43.87 3.41
1861 5602 8.602472 AGGAGCTATAATATTTACTCCCTCTG 57.398 38.462 16.19 0.00 43.87 3.35
1862 5603 9.041354 CAAGGAGCTATAATATTTACTCCCTCT 57.959 37.037 16.19 5.28 43.87 3.69
1863 5604 8.261522 CCAAGGAGCTATAATATTTACTCCCTC 58.738 40.741 16.19 6.90 43.87 4.30
1864 5605 7.739904 ACCAAGGAGCTATAATATTTACTCCCT 59.260 37.037 16.19 6.59 43.87 4.20
1865 5606 7.919151 ACCAAGGAGCTATAATATTTACTCCC 58.081 38.462 16.19 4.26 43.87 4.30
1866 5607 9.794719 AAACCAAGGAGCTATAATATTTACTCC 57.205 33.333 13.70 13.70 43.28 3.85
1871 5612 9.700831 AGTGAAAACCAAGGAGCTATAATATTT 57.299 29.630 0.00 0.00 0.00 1.40
1888 5633 4.976987 TCAGACAACGAAAAGTGAAAACC 58.023 39.130 0.00 0.00 0.00 3.27
1962 5708 2.354203 CCAAGTGTCTAAGTCTGAGGCC 60.354 54.545 0.00 0.00 0.00 5.19
2103 6056 0.734253 CTCTACACGTCAGCACCTGC 60.734 60.000 0.00 0.00 42.49 4.85
2229 6182 6.038161 GCTGGTACATCAACATGTTGCTTATA 59.962 38.462 29.84 15.39 40.66 0.98
2235 6188 3.503363 ACTGCTGGTACATCAACATGTTG 59.497 43.478 29.01 29.01 40.66 3.33
2243 6196 6.939730 TCATAAAGAAAACTGCTGGTACATCA 59.060 34.615 0.00 0.00 38.20 3.07
2263 6224 8.893563 AATACAGAAAATCCAGGGTTTCATAA 57.106 30.769 15.25 4.36 36.41 1.90
2290 6251 3.115554 CACCAGTTGCTAGTTTTTGTGC 58.884 45.455 0.00 0.00 0.00 4.57
2585 7005 9.077885 ACAGTTCATATTGGTAAAATGTGAAGT 57.922 29.630 9.59 10.00 40.02 3.01
2613 7033 1.139989 CATGACTTCTGTGCGTCGTT 58.860 50.000 0.00 0.00 32.93 3.85
2686 7106 6.430925 CCAAATCTTACATCTGAAACCAGACA 59.569 38.462 0.00 0.00 42.84 3.41
2709 7129 4.538490 AGATATGGTGTACAAAAGGTCCCA 59.462 41.667 0.00 0.00 0.00 4.37
2745 7165 1.077663 TGTACGGAAGAGTTAGGGGGT 59.922 52.381 0.00 0.00 0.00 4.95
2765 7185 7.334171 TCATGATATGACAACAAGAAACGTGAT 59.666 33.333 0.00 0.00 33.59 3.06
2783 7203 2.158035 AGGGACAGGAGGCTCATGATAT 60.158 50.000 33.19 13.21 31.79 1.63
2810 7230 1.004440 AGAGACTTCCAAGCCACGC 60.004 57.895 0.00 0.00 0.00 5.34
2811 7231 0.734253 CGAGAGACTTCCAAGCCACG 60.734 60.000 0.00 0.00 0.00 4.94
2813 7233 1.975327 CCGAGAGACTTCCAAGCCA 59.025 57.895 0.00 0.00 0.00 4.75
2814 7234 1.448717 GCCGAGAGACTTCCAAGCC 60.449 63.158 0.00 0.00 0.00 4.35
2815 7235 1.448717 GGCCGAGAGACTTCCAAGC 60.449 63.158 0.00 0.00 0.00 4.01
2817 7237 1.229209 AGGGCCGAGAGACTTCCAA 60.229 57.895 0.00 0.00 0.00 3.53
2818 7238 1.984570 CAGGGCCGAGAGACTTCCA 60.985 63.158 0.00 0.00 0.00 3.53
2819 7239 2.726351 CCAGGGCCGAGAGACTTCC 61.726 68.421 0.00 0.00 0.00 3.46
2820 7240 1.950973 GACCAGGGCCGAGAGACTTC 61.951 65.000 0.00 0.00 0.00 3.01
2821 7241 1.985116 GACCAGGGCCGAGAGACTT 60.985 63.158 0.00 0.00 0.00 3.01
2822 7242 2.363147 GACCAGGGCCGAGAGACT 60.363 66.667 0.00 0.00 0.00 3.24
2824 7244 3.663815 GAGGACCAGGGCCGAGAGA 62.664 68.421 5.34 0.00 0.00 3.10
2826 7246 3.673597 AGAGGACCAGGGCCGAGA 61.674 66.667 5.34 0.00 0.00 4.04
2834 7254 4.087892 CACCGCCCAGAGGACCAG 62.088 72.222 0.00 0.00 33.47 4.00
2873 7941 2.552231 AAAGAAATCTCCCGGGGCCG 62.552 60.000 23.50 9.98 39.44 6.13
2875 7943 1.095807 CGAAAGAAATCTCCCGGGGC 61.096 60.000 23.50 3.40 0.00 5.80
2876 7944 0.539986 TCGAAAGAAATCTCCCGGGG 59.460 55.000 23.50 12.05 37.03 5.73
2980 8471 1.709994 CCAGGATCCTACCCAAGGCC 61.710 65.000 15.67 0.00 46.10 5.19
3018 8509 5.500234 CCAAAGGACACTTATGGATGAAGA 58.500 41.667 0.00 0.00 37.20 2.87
3040 8531 1.028868 GGACAGCATTGTGAGAGCCC 61.029 60.000 0.00 0.00 37.76 5.19
3099 8590 1.878775 GATTCCTGTGCCAGTGTGC 59.121 57.895 2.18 0.00 0.00 4.57
3124 8615 3.085533 TGGTGTTGGGAAATGGATTACG 58.914 45.455 0.00 0.00 0.00 3.18
3166 8657 5.992217 CAGTCCTAACCTTAACATATGCCTC 59.008 44.000 1.58 0.00 0.00 4.70
3215 8706 4.322273 CGCTCCCATGCTATCTCTTTATCA 60.322 45.833 0.00 0.00 0.00 2.15
3216 8707 4.180057 CGCTCCCATGCTATCTCTTTATC 58.820 47.826 0.00 0.00 0.00 1.75
3238 8729 0.961019 TGATGGGAGTGCAGCAAAAC 59.039 50.000 0.00 0.00 0.00 2.43
3243 8734 1.538047 TTTTCTGATGGGAGTGCAGC 58.462 50.000 0.00 0.00 0.00 5.25
3245 8736 3.438216 TCATTTTCTGATGGGAGTGCA 57.562 42.857 0.00 0.00 0.00 4.57
3246 8737 4.643784 AGAATCATTTTCTGATGGGAGTGC 59.356 41.667 0.00 0.00 44.03 4.40
3251 8742 7.870509 TGTAGAAGAATCATTTTCTGATGGG 57.129 36.000 5.54 0.00 44.03 4.00
3255 8746 9.342308 ACTGTTTGTAGAAGAATCATTTTCTGA 57.658 29.630 5.54 0.00 38.53 3.27
3545 9110 6.748132 ACCATCAATTGTTTTTGTGGTAGAG 58.252 36.000 5.13 0.00 38.28 2.43
4631 10516 4.500603 AGATTTGCTGCAAAGACTCAAG 57.499 40.909 28.86 0.00 36.76 3.02
4684 10569 6.258507 TCATGACATTTGTTATCCTCATGTCG 59.741 38.462 0.00 0.00 39.59 4.35
4705 10590 7.255381 CCCTTATCAAGGTAAGCTTTGATCATG 60.255 40.741 13.34 6.64 44.70 3.07
5137 11022 2.857483 TCTCAGTTTCAATTGCCGGAA 58.143 42.857 5.05 0.00 0.00 4.30
5231 11120 4.696899 ACACGAGATAACGACATCTTCA 57.303 40.909 0.00 0.00 35.37 3.02
5252 11141 4.900684 TCATCCGGTGACATCAAGTTTTA 58.099 39.130 0.00 0.00 0.00 1.52
5256 11145 2.303022 ACTTCATCCGGTGACATCAAGT 59.697 45.455 0.00 2.23 36.32 3.16
5261 11202 3.450817 TCATGTACTTCATCCGGTGACAT 59.549 43.478 0.00 2.68 36.32 3.06
5273 11214 5.886960 AGACCTTGCAATTCATGTACTTC 57.113 39.130 0.00 0.00 0.00 3.01
5274 11215 6.655078 AAAGACCTTGCAATTCATGTACTT 57.345 33.333 0.00 0.00 0.00 2.24
5275 11216 6.449698 CAAAAGACCTTGCAATTCATGTACT 58.550 36.000 0.00 0.00 0.00 2.73
5398 11365 3.617263 GGTACTGCAATCGACTGGTTAAG 59.383 47.826 0.00 0.00 0.00 1.85
5400 11367 2.093869 GGGTACTGCAATCGACTGGTTA 60.094 50.000 0.00 0.00 0.00 2.85
5533 11623 8.995027 ATGGTTGATTAATTATGTAAGCCAGA 57.005 30.769 0.00 0.00 0.00 3.86
5540 11630 8.846423 ACCCCAAATGGTTGATTAATTATGTA 57.154 30.769 0.00 0.00 36.83 2.29
5579 11670 3.669251 ATCTAGCTCTTACATTCGCCC 57.331 47.619 0.00 0.00 0.00 6.13
5664 11854 0.104487 TAGACAAACAACCACCGCGA 59.896 50.000 8.23 0.00 0.00 5.87
5745 12496 2.230508 CAGTTAACCGCTGTCACTAGGA 59.769 50.000 0.88 0.00 0.00 2.94
5764 12515 6.817641 AGCACATCTCTTTGTCTCTTTATCAG 59.182 38.462 0.00 0.00 0.00 2.90
5826 12581 8.635765 ACCTTATTTCTGAATTTGCAGAGTTA 57.364 30.769 0.00 0.00 44.93 2.24
5893 12705 3.194861 TGTCCTTCAACACAACTTCGAG 58.805 45.455 0.00 0.00 0.00 4.04
5894 12706 3.194861 CTGTCCTTCAACACAACTTCGA 58.805 45.455 0.00 0.00 0.00 3.71
5974 12794 3.866910 TCAGTTAGTTCCGTCAAACACAC 59.133 43.478 0.00 0.00 0.00 3.82
5976 12796 5.260900 GTTTCAGTTAGTTCCGTCAAACAC 58.739 41.667 0.00 0.00 0.00 3.32
6001 12821 5.051641 CCACGACACGAGAATAAATTAGAGC 60.052 44.000 0.00 0.00 0.00 4.09
6002 12822 5.051641 GCCACGACACGAGAATAAATTAGAG 60.052 44.000 0.00 0.00 0.00 2.43
6024 12844 3.605749 TTACTCGGCCTGTGCTGCC 62.606 63.158 0.00 0.00 43.94 4.85
6035 12855 3.733727 GTGGTTTTGTGCAATTTACTCGG 59.266 43.478 0.00 0.00 0.00 4.63
6037 12857 4.688021 TGGTGGTTTTGTGCAATTTACTC 58.312 39.130 0.00 0.00 0.00 2.59
6038 12858 4.161377 ACTGGTGGTTTTGTGCAATTTACT 59.839 37.500 0.00 0.00 0.00 2.24
6039 12859 4.438148 ACTGGTGGTTTTGTGCAATTTAC 58.562 39.130 0.00 0.00 0.00 2.01
6040 12860 4.744795 ACTGGTGGTTTTGTGCAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
6041 12861 3.625649 ACTGGTGGTTTTGTGCAATTT 57.374 38.095 0.00 0.00 0.00 1.82
6042 12862 3.625649 AACTGGTGGTTTTGTGCAATT 57.374 38.095 0.00 0.00 33.90 2.32
6043 12863 3.055530 TCAAACTGGTGGTTTTGTGCAAT 60.056 39.130 0.00 0.00 44.77 3.56
6044 12864 2.300152 TCAAACTGGTGGTTTTGTGCAA 59.700 40.909 0.00 0.00 44.77 4.08
6045 12865 1.895798 TCAAACTGGTGGTTTTGTGCA 59.104 42.857 0.00 0.00 44.77 4.57
6046 12866 2.663826 TCAAACTGGTGGTTTTGTGC 57.336 45.000 0.00 0.00 44.77 4.57
6048 12868 3.169908 ACCTTCAAACTGGTGGTTTTGT 58.830 40.909 0.00 0.00 44.77 2.83
6049 12869 3.885724 ACCTTCAAACTGGTGGTTTTG 57.114 42.857 0.00 0.00 44.77 2.44
6051 12871 9.410918 CAAACCTAACCTTCAAACTGGTGGTTT 62.411 40.741 11.43 11.43 45.43 3.27
6053 12873 2.512476 ACCTAACCTTCAAACTGGTGGT 59.488 45.455 0.00 0.00 36.57 4.16
6054 12874 3.223674 ACCTAACCTTCAAACTGGTGG 57.776 47.619 0.00 0.00 36.57 4.61
6055 12875 4.736464 GCAAACCTAACCTTCAAACTGGTG 60.736 45.833 0.00 0.00 36.57 4.17
6056 12876 3.383505 GCAAACCTAACCTTCAAACTGGT 59.616 43.478 0.00 0.00 38.35 4.00
6057 12877 3.550030 CGCAAACCTAACCTTCAAACTGG 60.550 47.826 0.00 0.00 0.00 4.00
6058 12878 3.314080 TCGCAAACCTAACCTTCAAACTG 59.686 43.478 0.00 0.00 0.00 3.16
6059 12879 3.547746 TCGCAAACCTAACCTTCAAACT 58.452 40.909 0.00 0.00 0.00 2.66
6060 12880 3.974871 TCGCAAACCTAACCTTCAAAC 57.025 42.857 0.00 0.00 0.00 2.93
6062 12882 5.531659 TGTTATTCGCAAACCTAACCTTCAA 59.468 36.000 0.00 0.00 0.00 2.69
6064 12884 5.616488 TGTTATTCGCAAACCTAACCTTC 57.384 39.130 0.00 0.00 0.00 3.46
6065 12885 6.015772 ACAATGTTATTCGCAAACCTAACCTT 60.016 34.615 0.00 0.00 0.00 3.50
6067 12887 5.705902 ACAATGTTATTCGCAAACCTAACC 58.294 37.500 0.00 0.00 0.00 2.85
6068 12888 8.905103 ATTACAATGTTATTCGCAAACCTAAC 57.095 30.769 0.00 0.00 0.00 2.34
6069 12889 9.991388 GTATTACAATGTTATTCGCAAACCTAA 57.009 29.630 0.00 0.00 0.00 2.69
6070 12890 8.329583 CGTATTACAATGTTATTCGCAAACCTA 58.670 33.333 0.00 0.00 0.00 3.08
6071 12891 7.148373 ACGTATTACAATGTTATTCGCAAACCT 60.148 33.333 10.40 0.00 0.00 3.50
6072 12892 6.962678 ACGTATTACAATGTTATTCGCAAACC 59.037 34.615 10.40 0.00 0.00 3.27
6073 12893 7.942145 ACGTATTACAATGTTATTCGCAAAC 57.058 32.000 10.40 0.00 0.00 2.93
6075 12895 8.951954 AAAACGTATTACAATGTTATTCGCAA 57.048 26.923 10.40 0.00 0.00 4.85
6076 12896 8.951954 AAAAACGTATTACAATGTTATTCGCA 57.048 26.923 10.40 0.00 0.00 5.10
6101 12921 2.490115 AGACGTGGTGTTTTCTGCAAAA 59.510 40.909 0.00 0.00 0.00 2.44
6104 12924 1.400142 CAAGACGTGGTGTTTTCTGCA 59.600 47.619 0.00 0.00 0.00 4.41
6106 12926 6.533819 TTATACAAGACGTGGTGTTTTCTG 57.466 37.500 6.06 0.00 0.00 3.02
6114 12934 8.046294 TGCAAAAATATTATACAAGACGTGGT 57.954 30.769 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.