Multiple sequence alignment - TraesCS6A01G091000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G091000 chr6A 100.000 3590 0 0 1829 5418 59707945 59711534 0.000000e+00 6630.0
1 TraesCS6A01G091000 chr6A 87.874 2573 239 39 2613 5176 59785694 59788202 0.000000e+00 2955.0
2 TraesCS6A01G091000 chr6A 100.000 1297 0 0 1 1297 59706117 59707413 0.000000e+00 2396.0
3 TraesCS6A01G091000 chr6A 84.474 1681 235 16 2652 4328 59344578 59346236 0.000000e+00 1635.0
4 TraesCS6A01G091000 chr6A 85.366 1599 206 18 2742 4328 59676263 59677845 0.000000e+00 1631.0
5 TraesCS6A01G091000 chr6A 84.118 340 32 10 1992 2331 59783762 59784079 5.270000e-80 309.0
6 TraesCS6A01G091000 chr6A 85.427 199 19 8 4978 5174 59814920 59815110 1.190000e-46 198.0
7 TraesCS6A01G091000 chr6A 91.912 136 11 0 5242 5377 59788212 59788347 1.990000e-44 191.0
8 TraesCS6A01G091000 chr6D 95.434 3395 122 18 1830 5217 45202670 45206038 0.000000e+00 5380.0
9 TraesCS6A01G091000 chr6D 88.632 2340 207 28 2654 4986 45208899 45211186 0.000000e+00 2793.0
10 TraesCS6A01G091000 chr6D 93.707 1303 64 9 1 1297 45201337 45202627 0.000000e+00 1936.0
11 TraesCS6A01G091000 chr6D 84.681 1645 226 16 2652 4292 80290443 80292065 0.000000e+00 1618.0
12 TraesCS6A01G091000 chr6D 86.985 922 82 16 2830 3748 45479905 45480791 0.000000e+00 1003.0
13 TraesCS6A01G091000 chr6D 90.175 285 19 7 4895 5176 45211653 45211931 3.990000e-96 363.0
14 TraesCS6A01G091000 chr6D 83.704 135 17 5 4526 4655 44865162 44865296 7.370000e-24 122.0
15 TraesCS6A01G091000 chr6D 84.252 127 11 7 4526 4643 44507824 44507950 1.230000e-21 115.0
16 TraesCS6A01G091000 chr6D 82.069 145 12 10 4526 4658 44935508 44935650 1.600000e-20 111.0
17 TraesCS6A01G091000 chr6D 94.444 54 3 0 5181 5234 288470114 288470167 3.480000e-12 84.2
18 TraesCS6A01G091000 chr6D 85.915 71 6 4 203 270 24594361 24594292 7.530000e-09 73.1
19 TraesCS6A01G091000 chr6D 84.507 71 7 4 203 270 24593657 24593588 3.500000e-07 67.6
20 TraesCS6A01G091000 chr6D 93.333 45 1 2 203 246 24593422 24593379 1.260000e-06 65.8
21 TraesCS6A01G091000 chr6D 89.091 55 2 4 203 254 24593892 24593839 1.260000e-06 65.8
22 TraesCS6A01G091000 chr6D 89.091 55 2 4 203 254 24594126 24594073 1.260000e-06 65.8
23 TraesCS6A01G091000 chr6D 79.167 96 14 6 163 254 24594636 24594543 1.630000e-05 62.1
24 TraesCS6A01G091000 chr6B 95.139 1728 72 9 3434 5156 113783435 113785155 0.000000e+00 2715.0
25 TraesCS6A01G091000 chr6B 88.705 1328 118 17 3401 4713 113847323 113848633 0.000000e+00 1592.0
26 TraesCS6A01G091000 chr6B 85.077 1367 182 16 2968 4328 113771078 113772428 0.000000e+00 1375.0
27 TraesCS6A01G091000 chr6B 95.131 842 25 6 2603 3436 113782345 113783178 0.000000e+00 1314.0
28 TraesCS6A01G091000 chr6B 92.123 749 37 7 1834 2571 113781607 113782344 0.000000e+00 1037.0
29 TraesCS6A01G091000 chr6B 84.485 709 72 10 2654 3360 113846640 113847312 0.000000e+00 665.0
30 TraesCS6A01G091000 chr6B 93.891 311 6 5 954 1264 113780927 113781224 1.780000e-124 457.0
31 TraesCS6A01G091000 chr6B 92.177 294 18 3 4695 4986 113848641 113848931 1.400000e-110 411.0
32 TraesCS6A01G091000 chr6B 80.941 425 65 12 2649 3069 114018579 114018991 6.770000e-84 322.0
33 TraesCS6A01G091000 chr6B 89.453 256 16 8 4923 5176 113849362 113849608 4.070000e-81 313.0
34 TraesCS6A01G091000 chr6B 92.683 164 10 2 5242 5404 113849621 113849783 9.070000e-58 235.0
35 TraesCS6A01G091000 chr6B 88.333 180 14 4 5231 5404 113785169 113785347 5.500000e-50 209.0
36 TraesCS6A01G091000 chr6B 83.333 138 14 7 4526 4654 113657787 113657924 9.530000e-23 119.0
37 TraesCS6A01G091000 chr7B 73.484 577 103 32 265 825 718090726 718091268 7.210000e-39 172.0
38 TraesCS6A01G091000 chr4D 96.078 51 2 0 5184 5234 419251471 419251421 3.480000e-12 84.2
39 TraesCS6A01G091000 chr4D 91.525 59 3 2 5176 5234 121077009 121076953 4.500000e-11 80.5
40 TraesCS6A01G091000 chr4D 90.164 61 4 2 5164 5224 394487408 394487350 1.620000e-10 78.7
41 TraesCS6A01G091000 chr3A 96.078 51 2 0 5184 5234 584446824 584446774 3.480000e-12 84.2
42 TraesCS6A01G091000 chr4B 97.872 47 1 0 5177 5223 653488542 653488496 1.250000e-11 82.4
43 TraesCS6A01G091000 chr2A 97.826 46 0 1 5180 5224 682630520 682630475 1.620000e-10 78.7
44 TraesCS6A01G091000 chr4A 95.833 48 1 1 5176 5223 30362701 30362655 5.820000e-10 76.8
45 TraesCS6A01G091000 chr5D 74.178 213 38 8 199 396 532802501 532802291 7.530000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G091000 chr6A 59706117 59711534 5417 False 4513.000000 6630 100.0000 1 5418 2 chr6A.!!$F4 5417
1 TraesCS6A01G091000 chr6A 59344578 59346236 1658 False 1635.000000 1635 84.4740 2652 4328 1 chr6A.!!$F1 1676
2 TraesCS6A01G091000 chr6A 59676263 59677845 1582 False 1631.000000 1631 85.3660 2742 4328 1 chr6A.!!$F2 1586
3 TraesCS6A01G091000 chr6A 59783762 59788347 4585 False 1151.666667 2955 87.9680 1992 5377 3 chr6A.!!$F5 3385
4 TraesCS6A01G091000 chr6D 45201337 45211931 10594 False 2618.000000 5380 91.9870 1 5217 4 chr6D.!!$F7 5216
5 TraesCS6A01G091000 chr6D 80290443 80292065 1622 False 1618.000000 1618 84.6810 2652 4292 1 chr6D.!!$F5 1640
6 TraesCS6A01G091000 chr6D 45479905 45480791 886 False 1003.000000 1003 86.9850 2830 3748 1 chr6D.!!$F4 918
7 TraesCS6A01G091000 chr6B 113771078 113772428 1350 False 1375.000000 1375 85.0770 2968 4328 1 chr6B.!!$F2 1360
8 TraesCS6A01G091000 chr6B 113780927 113785347 4420 False 1146.400000 2715 92.9234 954 5404 5 chr6B.!!$F4 4450
9 TraesCS6A01G091000 chr6B 113846640 113849783 3143 False 643.200000 1592 89.5006 2654 5404 5 chr6B.!!$F5 2750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 789 0.250234 CATGAGAAGTGGCCTCGGAA 59.750 55.000 3.32 0.00 33.51 4.30 F
896 902 1.561542 ACCAATTTCGAGGGATCAGCT 59.438 47.619 0.00 0.00 0.00 4.24 F
2116 2132 3.004024 GTCAACTGATTGTGTTGGCAG 57.996 47.619 6.37 0.00 45.87 4.85 F
2650 4003 1.542915 ACAATGAATGGTGTGCTCAGC 59.457 47.619 10.89 10.89 41.77 4.26 F
4058 5690 1.349688 TGGCTAAGGGTCGTTGTGATT 59.650 47.619 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2049 1.472480 ACCGTGCATTTCCAATAGTGC 59.528 47.619 0.00 0.00 38.05 4.40 R
2262 2279 2.177669 ACAAGCAGGGCCATGGTATATT 59.822 45.455 24.00 3.76 0.00 1.28 R
3115 4487 0.036022 GCTCAGGAAGAGGTTGCACT 59.964 55.000 0.00 0.00 44.86 4.40 R
4400 6032 1.606668 GTTTCAATTGCCGGAGACACA 59.393 47.619 5.05 0.00 0.00 3.72 R
5361 13469 0.309922 CAGACCTGTGCTGCAACAAG 59.690 55.000 2.77 2.43 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.397564 TTAAACCCTCACACGACCCC 59.602 55.000 0.00 0.00 0.00 4.95
35 36 3.559069 CTCACACGACCCCTATACCTTA 58.441 50.000 0.00 0.00 0.00 2.69
54 55 7.827819 ACCTTAACTTTTCAGTTTTGCTTTC 57.172 32.000 0.00 0.00 40.66 2.62
61 62 8.840833 ACTTTTCAGTTTTGCTTTCCTAAAAA 57.159 26.923 0.00 0.00 0.00 1.94
94 95 2.579400 AGCCGGACCCCTAAACTTAAAT 59.421 45.455 5.05 0.00 0.00 1.40
113 114 8.661345 ACTTAAATCCTCAAAAGAACTAGACCT 58.339 33.333 0.00 0.00 0.00 3.85
132 133 2.026449 CCTCACATGGAAGCCTTTCTCT 60.026 50.000 0.00 0.00 33.68 3.10
144 145 6.761242 GGAAGCCTTTCTCTCTATTCTTCTTC 59.239 42.308 0.00 0.00 33.68 2.87
173 174 2.248280 TTCAAGCAGCCAACTACGAA 57.752 45.000 0.00 0.00 0.00 3.85
227 228 2.455557 AGCGCCTATGATAGATGCTCT 58.544 47.619 2.29 1.24 32.95 4.09
299 300 7.041576 ACGAAGTAGTTAAAATTTGTCCTCCAC 60.042 37.037 0.00 0.00 41.94 4.02
300 301 7.041644 CGAAGTAGTTAAAATTTGTCCTCCACA 60.042 37.037 0.00 0.00 0.00 4.17
301 302 8.706322 AAGTAGTTAAAATTTGTCCTCCACAT 57.294 30.769 0.00 0.00 33.90 3.21
310 311 2.836360 CCTCCACATGCCATGGCC 60.836 66.667 33.44 16.23 41.09 5.36
332 333 4.561938 CCCGGGTGCTTCATCGTATAAATA 60.562 45.833 14.18 0.00 0.00 1.40
351 352 5.379706 AATAAGTTCATCCTCTCCCCTTG 57.620 43.478 0.00 0.00 0.00 3.61
378 379 2.514592 AGCGATGGCATTGTCCGG 60.515 61.111 15.93 0.00 43.41 5.14
400 401 5.154222 GGAACACAAGGATTCATCGAAAAC 58.846 41.667 0.00 0.00 0.00 2.43
458 459 8.568732 TGTTTCGTCCTTTACATTGATTTTTC 57.431 30.769 0.00 0.00 0.00 2.29
461 462 5.184287 TCGTCCTTTACATTGATTTTTCCCC 59.816 40.000 0.00 0.00 0.00 4.81
463 464 5.483937 GTCCTTTACATTGATTTTTCCCCCT 59.516 40.000 0.00 0.00 0.00 4.79
465 466 5.721480 CCTTTACATTGATTTTTCCCCCTCT 59.279 40.000 0.00 0.00 0.00 3.69
466 467 6.213397 CCTTTACATTGATTTTTCCCCCTCTT 59.787 38.462 0.00 0.00 0.00 2.85
467 468 7.256655 CCTTTACATTGATTTTTCCCCCTCTTT 60.257 37.037 0.00 0.00 0.00 2.52
480 481 3.385115 CCCCTCTTTGTAGGTGTCCTAT 58.615 50.000 0.00 0.00 38.48 2.57
506 507 0.890996 GTGGCAGCTTTGCTAGTGGT 60.891 55.000 0.00 0.00 36.40 4.16
517 518 1.621317 TGCTAGTGGTCGGACAATTGA 59.379 47.619 13.59 0.00 0.00 2.57
520 521 3.616560 GCTAGTGGTCGGACAATTGAAGA 60.617 47.826 13.59 5.35 0.00 2.87
529 530 1.514873 CAATTGAAGAAGCGCCGCC 60.515 57.895 4.98 0.00 0.00 6.13
553 554 2.074579 CTAGGGATGACTAGGGGGAGA 58.925 57.143 0.00 0.00 37.41 3.71
554 555 0.863956 AGGGATGACTAGGGGGAGAG 59.136 60.000 0.00 0.00 0.00 3.20
620 626 2.989422 AAAAAGGCCGTTGATTCTCG 57.011 45.000 4.14 0.00 0.00 4.04
630 636 2.093625 CGTTGATTCTCGCGGAATTTGA 59.906 45.455 19.28 9.34 43.90 2.69
632 638 4.472286 GTTGATTCTCGCGGAATTTGAAA 58.528 39.130 19.28 11.54 43.90 2.69
736 742 0.320374 CGGGCAAACAGTGTAGAGGA 59.680 55.000 0.00 0.00 0.00 3.71
748 754 2.094182 GTGTAGAGGATCAACGCAAGGA 60.094 50.000 0.00 0.00 39.39 3.36
781 787 0.467384 ATCATGAGAAGTGGCCTCGG 59.533 55.000 3.32 0.00 33.51 4.63
783 789 0.250234 CATGAGAAGTGGCCTCGGAA 59.750 55.000 3.32 0.00 33.51 4.30
807 813 4.324267 AGTAAATATAAGCGGCATCCACC 58.676 43.478 1.45 0.00 0.00 4.61
893 899 6.242396 TCTTTTAACCAATTTCGAGGGATCA 58.758 36.000 0.00 0.00 0.00 2.92
896 902 1.561542 ACCAATTTCGAGGGATCAGCT 59.438 47.619 0.00 0.00 0.00 4.24
1056 1062 3.017581 ATCTCCTTTGCCCCGGCT 61.018 61.111 7.35 0.00 42.51 5.52
1948 1954 3.412237 AAGTAGCGGGCTTGAAGTTTA 57.588 42.857 0.00 0.00 0.00 2.01
1981 1987 3.382546 AGCGAGGAAATGGAATGGATTTG 59.617 43.478 0.00 0.00 0.00 2.32
2034 2049 9.632807 TTTGTGGATAATTTTGATTTAAGGTCG 57.367 29.630 0.00 0.00 0.00 4.79
2092 2108 9.674068 GTTCCTTTTAAGACTGAAGAATAGGAT 57.326 33.333 0.00 0.00 0.00 3.24
2116 2132 3.004024 GTCAACTGATTGTGTTGGCAG 57.996 47.619 6.37 0.00 45.87 4.85
2231 2248 3.171528 AGGTAGGAAGGGAGTTGTGTAC 58.828 50.000 0.00 0.00 0.00 2.90
2262 2279 6.884295 ACTATCAGTAATTGCAAAAGCAGGTA 59.116 34.615 1.71 0.00 0.00 3.08
2305 2322 2.800250 CTGCCTGGGAACTTTGAAGAT 58.200 47.619 0.00 0.00 0.00 2.40
2439 2560 3.667497 TTTAGCCTCAGACTCAGTGTG 57.333 47.619 0.00 0.00 0.00 3.82
2534 2663 6.483307 TGAGTCAGTGACTTTAAGTTCCATTG 59.517 38.462 26.14 1.38 43.53 2.82
2588 2717 2.277692 CATGCGCGTTGATGCCTG 60.278 61.111 8.43 0.00 0.00 4.85
2604 2733 2.761208 TGCCTGTCTAGCTTCTAAGGTC 59.239 50.000 0.00 0.00 37.92 3.85
2623 2752 5.395611 AGGTCTAACAGTTGAGGTAGTTCT 58.604 41.667 0.00 0.00 0.00 3.01
2650 4003 1.542915 ACAATGAATGGTGTGCTCAGC 59.457 47.619 10.89 10.89 41.77 4.26
2944 4313 6.378280 ACATAAATAGGCAAAAACCTGGAGAG 59.622 38.462 0.00 0.00 41.34 3.20
3110 4482 3.801050 CGAGAGTTCATATGCTGTTCTGG 59.199 47.826 0.00 0.00 0.00 3.86
3111 4483 4.679106 CGAGAGTTCATATGCTGTTCTGGT 60.679 45.833 0.00 0.00 0.00 4.00
3112 4484 4.511527 AGAGTTCATATGCTGTTCTGGTG 58.488 43.478 0.00 0.00 0.00 4.17
3113 4485 3.012518 AGTTCATATGCTGTTCTGGTGC 58.987 45.455 0.00 0.00 0.00 5.01
3114 4486 2.749076 GTTCATATGCTGTTCTGGTGCA 59.251 45.455 0.00 0.00 41.13 4.57
3115 4487 3.070476 TCATATGCTGTTCTGGTGCAA 57.930 42.857 0.00 0.00 40.24 4.08
3693 5325 7.598869 CAGTTACATTAAACTAGAGCTGTGTGA 59.401 37.037 0.00 0.00 37.61 3.58
3973 5605 9.673454 CAATATGACATGAGGATAACAAATGTG 57.327 33.333 0.00 0.00 0.00 3.21
4058 5690 1.349688 TGGCTAAGGGTCGTTGTGATT 59.650 47.619 0.00 0.00 0.00 2.57
4187 5819 3.578688 GTGCCATCCAAAAAGCTTACAG 58.421 45.455 0.00 0.00 0.00 2.74
4400 6032 1.000955 AGACGACGAAATTGCTGGAGT 59.999 47.619 0.00 0.00 0.00 3.85
4532 6164 0.588252 TCTCGTGAAAAGCTTGCTGC 59.412 50.000 0.00 0.00 43.29 5.25
4562 6197 3.326836 TCTGTACATGAATTGCGGTCA 57.673 42.857 0.00 0.00 0.00 4.02
4687 6325 3.752412 TGTTACTCATGTAGTCGACCG 57.248 47.619 13.01 0.00 39.80 4.79
4714 6386 2.116238 TGCAGTACCCAGGTATTCTCC 58.884 52.381 0.00 0.00 32.82 3.71
4753 11796 0.179215 CATTCGTGAAGAGGCGCAAC 60.179 55.000 10.83 1.62 0.00 4.17
4761 11804 4.451652 GAGGCGCAACGAAGCAGC 62.452 66.667 10.83 0.82 34.76 5.25
4762 11805 4.996434 AGGCGCAACGAAGCAGCT 62.996 61.111 10.83 0.00 35.46 4.24
4832 11875 7.880160 TTAGGGAAACTGGATCACATTATTG 57.120 36.000 0.00 0.00 0.00 1.90
4850 11893 7.069826 ACATTATTGATCAACCATTTGGGGTAG 59.930 37.037 11.07 0.00 41.32 3.18
4871 11914 0.101759 ATGCAATGTCAGGCGAATGC 59.898 50.000 0.00 0.00 41.71 3.56
4916 11959 7.860872 AGTTTTTCTGTATTTGAAAGCTTACCG 59.139 33.333 0.00 0.00 35.27 4.02
4936 12475 2.675317 CGACAAGACTCAAAGGCCTAGG 60.675 54.545 5.16 3.67 0.00 3.02
4956 12496 2.540931 GGTAATATAACACGCGGTGGTG 59.459 50.000 12.47 1.02 43.54 4.17
4960 12500 1.231958 ATAACACGCGGTGGTGGTTG 61.232 55.000 12.47 0.00 42.23 3.77
4961 12501 2.590391 TAACACGCGGTGGTGGTTGT 62.590 55.000 12.47 0.00 42.23 3.32
5017 13120 4.935352 AAGCTGCAGTTGGAATTGTAAA 57.065 36.364 16.64 0.00 0.00 2.01
5044 13147 1.822990 TCCCTAGTGACAGCGGTTAAG 59.177 52.381 0.00 0.00 0.00 1.85
5049 13152 2.688507 AGTGACAGCGGTTAAGTGATG 58.311 47.619 0.00 0.00 0.00 3.07
5051 13154 3.055819 AGTGACAGCGGTTAAGTGATGAT 60.056 43.478 0.00 0.00 0.00 2.45
5078 13181 2.746362 CAAAGAGATGTGCTCCCTGTTC 59.254 50.000 0.00 0.00 45.10 3.18
5089 13192 1.480137 CTCCCTGTTCTGAGCCTACAG 59.520 57.143 0.00 0.00 39.13 2.74
5126 13229 2.677559 GCAACTCTGCAAGTTCAGAC 57.322 50.000 10.19 0.68 45.28 3.51
5127 13230 1.942657 GCAACTCTGCAAGTTCAGACA 59.057 47.619 10.19 0.00 45.28 3.41
5128 13231 2.032204 GCAACTCTGCAAGTTCAGACAG 60.032 50.000 10.19 0.00 45.28 3.51
5129 13232 3.461061 CAACTCTGCAAGTTCAGACAGA 58.539 45.455 10.19 0.00 45.28 3.41
5196 13299 4.302559 AAAATAACACTCCCTCTGTCCC 57.697 45.455 0.00 0.00 0.00 4.46
5197 13300 2.642171 ATAACACTCCCTCTGTCCCA 57.358 50.000 0.00 0.00 0.00 4.37
5198 13301 2.642171 TAACACTCCCTCTGTCCCAT 57.358 50.000 0.00 0.00 0.00 4.00
5199 13302 2.642171 AACACTCCCTCTGTCCCATA 57.358 50.000 0.00 0.00 0.00 2.74
5200 13303 2.642171 ACACTCCCTCTGTCCCATAA 57.358 50.000 0.00 0.00 0.00 1.90
5201 13304 3.136641 ACACTCCCTCTGTCCCATAAT 57.863 47.619 0.00 0.00 0.00 1.28
5202 13305 4.280789 ACACTCCCTCTGTCCCATAATA 57.719 45.455 0.00 0.00 0.00 0.98
5203 13306 4.832492 ACACTCCCTCTGTCCCATAATAT 58.168 43.478 0.00 0.00 0.00 1.28
5204 13307 5.977533 ACACTCCCTCTGTCCCATAATATA 58.022 41.667 0.00 0.00 0.00 0.86
5205 13308 6.390504 ACACTCCCTCTGTCCCATAATATAA 58.609 40.000 0.00 0.00 0.00 0.98
5206 13309 6.498651 ACACTCCCTCTGTCCCATAATATAAG 59.501 42.308 0.00 0.00 0.00 1.73
5207 13310 6.726299 CACTCCCTCTGTCCCATAATATAAGA 59.274 42.308 0.00 0.00 0.00 2.10
5208 13311 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
5209 13312 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
5210 13313 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
5211 13314 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
5212 13315 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
5213 13316 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
5214 13317 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
5215 13318 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
5216 13319 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
5217 13320 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
5218 13321 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
5219 13322 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
5220 13323 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
5221 13324 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
5224 13327 3.854286 AAGAGCGTTTTTGACACTACG 57.146 42.857 0.00 0.00 37.09 3.51
5225 13328 2.132762 AGAGCGTTTTTGACACTACGG 58.867 47.619 0.00 0.00 34.76 4.02
5226 13329 2.129607 GAGCGTTTTTGACACTACGGA 58.870 47.619 0.00 0.00 34.76 4.69
5227 13330 2.132762 AGCGTTTTTGACACTACGGAG 58.867 47.619 0.00 0.00 34.76 4.63
5228 13331 1.193874 GCGTTTTTGACACTACGGAGG 59.806 52.381 0.00 0.00 34.76 4.30
5229 13332 1.796459 CGTTTTTGACACTACGGAGGG 59.204 52.381 0.00 0.00 0.00 4.30
5230 13333 2.546373 CGTTTTTGACACTACGGAGGGA 60.546 50.000 2.30 0.00 0.00 4.20
5231 13334 3.064931 GTTTTTGACACTACGGAGGGAG 58.935 50.000 2.30 0.00 0.00 4.30
5232 13335 2.005370 TTTGACACTACGGAGGGAGT 57.995 50.000 2.30 0.00 0.00 3.85
5233 13336 2.885135 TTGACACTACGGAGGGAGTA 57.115 50.000 2.30 0.00 0.00 2.59
5234 13337 2.885135 TGACACTACGGAGGGAGTAA 57.115 50.000 2.30 0.00 0.00 2.24
5235 13338 2.440409 TGACACTACGGAGGGAGTAAC 58.560 52.381 2.30 0.00 0.00 2.50
5236 13339 2.040813 TGACACTACGGAGGGAGTAACT 59.959 50.000 2.30 0.00 0.00 2.24
5237 13340 2.422832 GACACTACGGAGGGAGTAACTG 59.577 54.545 2.30 0.00 0.00 3.16
5238 13341 2.040813 ACACTACGGAGGGAGTAACTGA 59.959 50.000 2.30 0.00 0.00 3.41
5239 13342 2.683867 CACTACGGAGGGAGTAACTGAG 59.316 54.545 0.00 0.00 0.00 3.35
5240 13343 2.299521 CTACGGAGGGAGTAACTGAGG 58.700 57.143 0.00 0.00 0.00 3.86
5300 13408 8.954950 ATATGTTCTCCTGATTCAGTTTGTAG 57.045 34.615 12.54 2.79 0.00 2.74
5361 13469 9.643652 CTGAAAGCATTCTAATTTATTCTCGTC 57.356 33.333 3.03 0.00 36.48 4.20
5388 13496 2.348998 CACAGGTCTGAGGGGCAC 59.651 66.667 4.84 0.00 0.00 5.01
5404 13512 1.551883 GGCACTCCATCAGGCATTTTT 59.448 47.619 0.00 0.00 33.74 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.397564 GGGGTCGTGTGAGGGTTTAA 59.602 55.000 0.00 0.00 0.00 1.52
18 19 5.349061 AAAGTTAAGGTATAGGGGTCGTG 57.651 43.478 0.00 0.00 0.00 4.35
35 36 8.840833 TTTTAGGAAAGCAAAACTGAAAAGTT 57.159 26.923 0.00 0.00 0.00 2.66
78 79 7.668469 TCTTTTGAGGATTTAAGTTTAGGGGTC 59.332 37.037 0.00 0.00 0.00 4.46
94 95 4.899457 TGTGAGGTCTAGTTCTTTTGAGGA 59.101 41.667 0.00 0.00 0.00 3.71
113 114 2.909006 AGAGAGAAAGGCTTCCATGTGA 59.091 45.455 0.00 0.00 31.28 3.58
132 133 8.207350 TGAAAGGAAGAAGGAAGAAGAATAGA 57.793 34.615 0.00 0.00 0.00 1.98
144 145 1.543358 GGCTGCTTGAAAGGAAGAAGG 59.457 52.381 0.00 0.00 30.01 3.46
173 174 6.757897 TTGAAATCATCTAGTGCCGAAAAT 57.242 33.333 0.00 0.00 0.00 1.82
215 216 8.186163 CAAATTACTTTTGCAGAGCATCTATCA 58.814 33.333 0.00 0.00 40.38 2.15
227 228 7.360861 CGGTGAGACTATCAAATTACTTTTGCA 60.361 37.037 0.00 0.00 43.68 4.08
252 253 0.361184 GTACACTTAAGTCGCGCACG 59.639 55.000 8.75 0.00 42.01 5.34
254 255 0.238025 TCGTACACTTAAGTCGCGCA 59.762 50.000 8.75 0.00 0.00 6.09
310 311 2.519377 TTATACGATGAAGCACCCGG 57.481 50.000 0.00 0.00 0.00 5.73
315 316 8.988934 GGATGAACTTATTTATACGATGAAGCA 58.011 33.333 0.00 0.00 0.00 3.91
332 333 2.573915 GACAAGGGGAGAGGATGAACTT 59.426 50.000 0.00 0.00 0.00 2.66
351 352 1.068250 GCCATCGCTCCACTAGGAC 59.932 63.158 0.00 0.00 39.61 3.85
378 379 5.853282 CAGTTTTCGATGAATCCTTGTGTTC 59.147 40.000 0.00 0.00 0.00 3.18
400 401 3.853330 CGTCGGTCGCCATTGCAG 61.853 66.667 0.00 0.00 37.32 4.41
458 459 0.618981 GGACACCTACAAAGAGGGGG 59.381 60.000 0.00 0.00 45.22 5.40
461 462 3.738281 CGCATAGGACACCTACAAAGAGG 60.738 52.174 0.00 0.00 39.10 3.69
463 464 2.829720 ACGCATAGGACACCTACAAAGA 59.170 45.455 0.00 0.00 39.10 2.52
465 466 2.300723 ACACGCATAGGACACCTACAAA 59.699 45.455 0.00 0.00 39.10 2.83
466 467 1.897133 ACACGCATAGGACACCTACAA 59.103 47.619 0.00 0.00 39.10 2.41
467 468 1.203758 CACACGCATAGGACACCTACA 59.796 52.381 0.00 0.00 39.10 2.74
480 481 2.828095 AAAGCTGCCACACACGCA 60.828 55.556 0.00 0.00 34.41 5.24
506 507 0.796312 GCGCTTCTTCAATTGTCCGA 59.204 50.000 5.13 0.00 0.00 4.55
529 530 0.900647 CCCTAGTCATCCCTAGCCCG 60.901 65.000 0.00 0.00 34.34 6.13
554 555 4.773117 GTCTCCGGCCACGACGAC 62.773 72.222 2.24 3.91 44.60 4.34
620 626 3.363178 GTCATCCGATTTCAAATTCCGC 58.637 45.455 0.00 0.00 0.00 5.54
684 690 1.620822 ACATTGTGTTCCTTGCCTCC 58.379 50.000 0.00 0.00 0.00 4.30
726 732 2.093973 CCTTGCGTTGATCCTCTACACT 60.094 50.000 0.00 0.00 0.00 3.55
728 734 2.176045 TCCTTGCGTTGATCCTCTACA 58.824 47.619 0.00 0.00 0.00 2.74
736 742 2.582052 TGACCTTTTCCTTGCGTTGAT 58.418 42.857 0.00 0.00 0.00 2.57
748 754 9.918630 CACTTCTCATGATAATTTTGACCTTTT 57.081 29.630 0.00 0.00 0.00 2.27
781 787 5.932303 TGGATGCCGCTTATATTTACTCTTC 59.068 40.000 0.00 0.00 0.00 2.87
783 789 5.238583 GTGGATGCCGCTTATATTTACTCT 58.761 41.667 0.00 0.00 0.00 3.24
825 831 7.045126 ACTGAATCTAGTCGATTTTCTAGGG 57.955 40.000 7.68 0.00 42.31 3.53
830 836 9.756461 GGTTAAAACTGAATCTAGTCGATTTTC 57.244 33.333 0.00 0.00 42.31 2.29
831 837 8.727910 GGGTTAAAACTGAATCTAGTCGATTTT 58.272 33.333 0.00 0.00 42.31 1.82
835 841 5.482878 AGGGGTTAAAACTGAATCTAGTCGA 59.517 40.000 0.00 0.00 0.00 4.20
885 891 3.137533 GTGCATTTCTAGCTGATCCCTC 58.862 50.000 0.00 0.00 0.00 4.30
893 899 4.637534 ACGATTCAATGTGCATTTCTAGCT 59.362 37.500 0.00 0.00 0.00 3.32
896 902 7.864882 TGAAAAACGATTCAATGTGCATTTCTA 59.135 29.630 0.00 0.00 36.42 2.10
946 952 1.435515 CGTGGGGTTTGTGGTTGTG 59.564 57.895 0.00 0.00 0.00 3.33
947 953 1.755008 CCGTGGGGTTTGTGGTTGT 60.755 57.895 0.00 0.00 0.00 3.32
948 954 1.038130 TTCCGTGGGGTTTGTGGTTG 61.038 55.000 0.00 0.00 33.83 3.77
949 955 1.038681 GTTCCGTGGGGTTTGTGGTT 61.039 55.000 0.00 0.00 33.83 3.67
950 956 1.454295 GTTCCGTGGGGTTTGTGGT 60.454 57.895 0.00 0.00 33.83 4.16
951 957 2.548295 CGTTCCGTGGGGTTTGTGG 61.548 63.158 0.00 0.00 33.83 4.17
952 958 3.027292 CGTTCCGTGGGGTTTGTG 58.973 61.111 0.00 0.00 33.83 3.33
1828 1834 3.669344 CCATTTGGCGCGGTGTGT 61.669 61.111 8.83 0.00 0.00 3.72
1829 1835 3.669344 ACCATTTGGCGCGGTGTG 61.669 61.111 8.83 0.00 39.32 3.82
1830 1836 3.669344 CACCATTTGGCGCGGTGT 61.669 61.111 19.58 1.18 44.27 4.16
1839 1845 1.901159 TCCAAATCAGGCCACCATTTG 59.099 47.619 19.79 19.79 37.29 2.32
1948 1954 1.481871 TTCCTCGCTTATCCCGAACT 58.518 50.000 0.00 0.00 33.92 3.01
1981 1987 2.158900 TGCAGAATAGAGCAACCCTAGC 60.159 50.000 0.00 0.00 37.90 3.42
2034 2049 1.472480 ACCGTGCATTTCCAATAGTGC 59.528 47.619 0.00 0.00 38.05 4.40
2135 2151 6.149973 CCAGTTTCACTTAGCATCAGAAATCA 59.850 38.462 0.00 0.00 31.73 2.57
2139 2156 4.326826 CCCAGTTTCACTTAGCATCAGAA 58.673 43.478 0.00 0.00 0.00 3.02
2162 2179 4.794648 TGCAGTATGGCACCCGGC 62.795 66.667 0.00 0.00 39.25 6.13
2231 2248 9.076596 GCTTTTGCAATTACTGATAGTTTAAGG 57.923 33.333 0.00 0.00 46.58 2.69
2262 2279 2.177669 ACAAGCAGGGCCATGGTATATT 59.822 45.455 24.00 3.76 0.00 1.28
2275 2292 3.371063 CCAGGCAGCACAAGCAGG 61.371 66.667 0.00 0.00 45.49 4.85
2305 2322 3.077484 AGAAAAGGAAGCTGCAGCATA 57.923 42.857 38.24 0.00 45.16 3.14
2361 2481 3.375642 CCTATGACGCTATCACACACTG 58.624 50.000 0.00 0.00 41.24 3.66
2362 2482 2.362397 CCCTATGACGCTATCACACACT 59.638 50.000 0.00 0.00 41.24 3.55
2534 2663 5.469479 ACCAATGCAGTTTAATGTGTTAGC 58.531 37.500 0.00 0.00 0.00 3.09
2588 2717 6.762702 ACTGTTAGACCTTAGAAGCTAGAC 57.237 41.667 0.00 0.00 0.00 2.59
2623 2752 4.826733 AGCACACCATTCATTGTTCTAACA 59.173 37.500 0.00 0.00 37.08 2.41
2650 4003 7.970614 GGTAATTCTCTGCTGGAAACAATAAAG 59.029 37.037 0.00 0.00 42.06 1.85
2944 4313 6.426646 TTTCCTTCCCTCTAGAGCATATTC 57.573 41.667 14.73 0.00 0.00 1.75
3112 4484 0.595095 CAGGAAGAGGTTGCACTTGC 59.405 55.000 0.00 0.00 42.50 4.01
3113 4485 2.149578 CTCAGGAAGAGGTTGCACTTG 58.850 52.381 0.00 0.00 40.84 3.16
3114 4486 1.544314 GCTCAGGAAGAGGTTGCACTT 60.544 52.381 0.00 0.00 44.86 3.16
3115 4487 0.036022 GCTCAGGAAGAGGTTGCACT 59.964 55.000 0.00 0.00 44.86 4.40
3149 4521 7.910162 CACAGCCAAATATTATACAGTGAACAC 59.090 37.037 0.00 0.00 0.00 3.32
3251 4624 5.804979 CGTGAACTTTTGAAACAAGGTCAAT 59.195 36.000 2.02 0.00 46.99 2.57
3848 5480 5.220624 GCATCACAAGATAGCTTCTGTTCAG 60.221 44.000 0.00 0.00 33.93 3.02
3973 5605 7.040823 CCCTTATCAAGGTAAGCTTTGATCATC 60.041 40.741 13.34 0.00 44.70 2.92
4058 5690 5.464057 CGGCAAATATGTAAATCGTCCTGTA 59.536 40.000 0.00 0.00 0.00 2.74
4187 5819 4.194640 TCATAGTGCTTCAGAAATCTGCC 58.805 43.478 5.53 0.00 43.46 4.85
4303 5935 5.336849 GGTTCTACCTGCAGCTATATAGGTG 60.337 48.000 29.46 29.46 43.11 4.00
4400 6032 1.606668 GTTTCAATTGCCGGAGACACA 59.393 47.619 5.05 0.00 0.00 3.72
4532 6164 3.260475 TCATGTACAGAAATCCGGTGG 57.740 47.619 0.00 0.00 0.00 4.61
4562 6197 7.065324 CAGAGCATCAAATGTAAAATGCCAAAT 59.935 33.333 2.78 0.00 44.34 2.32
4687 6325 1.271926 ACCTGGGTACTGCAATCAACC 60.272 52.381 0.00 0.00 0.00 3.77
4714 6386 3.906998 TGGTCGGCAACATTAAACATTG 58.093 40.909 0.00 0.00 0.00 2.82
4753 11796 3.515630 TCAGAAATCACTAGCTGCTTCG 58.484 45.455 7.79 1.95 0.00 3.79
4821 11864 7.419287 CCCCAAATGGTTGATCAATAATGTGAT 60.419 37.037 12.12 0.00 41.01 3.06
4832 11875 4.202151 GCATTCTACCCCAAATGGTTGATC 60.202 45.833 0.00 0.00 39.37 2.92
4850 11893 2.456989 CATTCGCCTGACATTGCATTC 58.543 47.619 0.00 0.00 0.00 2.67
4871 11914 2.289945 ACTGGCCAAAGTCTAGCTCTTG 60.290 50.000 7.01 0.00 0.00 3.02
4916 11959 2.303311 ACCTAGGCCTTTGAGTCTTGTC 59.697 50.000 12.58 0.00 0.00 3.18
4936 12475 2.540931 CCACCACCGCGTGTTATATTAC 59.459 50.000 4.92 0.00 31.47 1.89
4956 12496 7.254932 GCTGATACTTATTCCTGATCAACAACC 60.255 40.741 0.00 0.00 0.00 3.77
4960 12500 6.203723 GGTGCTGATACTTATTCCTGATCAAC 59.796 42.308 0.00 0.00 0.00 3.18
4961 12501 6.126796 TGGTGCTGATACTTATTCCTGATCAA 60.127 38.462 0.00 0.00 0.00 2.57
5017 13120 4.080526 ACCGCTGTCACTAGGGATAAAAAT 60.081 41.667 0.00 0.00 32.84 1.82
5044 13147 6.200665 GCACATCTCTTTGTCTCTATCATCAC 59.799 42.308 0.00 0.00 0.00 3.06
5049 13152 5.288804 GGAGCACATCTCTTTGTCTCTATC 58.711 45.833 0.00 0.00 41.60 2.08
5051 13154 3.449018 GGGAGCACATCTCTTTGTCTCTA 59.551 47.826 0.00 0.00 41.60 2.43
5089 13192 7.221452 CAGAGTTGCATGGAAATTATTTACAGC 59.779 37.037 8.65 11.58 36.81 4.40
5119 13222 8.779354 ATTACAAACCTTATCTCTGTCTGAAC 57.221 34.615 0.00 0.00 0.00 3.18
5126 13229 8.218338 AGCATCAATTACAAACCTTATCTCTG 57.782 34.615 0.00 0.00 0.00 3.35
5127 13230 8.814038 AAGCATCAATTACAAACCTTATCTCT 57.186 30.769 0.00 0.00 0.00 3.10
5128 13231 9.937175 GTAAGCATCAATTACAAACCTTATCTC 57.063 33.333 0.00 0.00 34.06 2.75
5129 13232 9.461312 TGTAAGCATCAATTACAAACCTTATCT 57.539 29.630 0.00 0.00 39.52 1.98
5176 13279 3.256704 TGGGACAGAGGGAGTGTTATTT 58.743 45.455 0.00 0.00 0.00 1.40
5178 13281 2.642171 TGGGACAGAGGGAGTGTTAT 57.358 50.000 0.00 0.00 0.00 1.89
5192 13295 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5193 13296 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5194 13297 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5195 13298 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5198 13301 8.800972 CGTAGTGTCAAAAACGCTCTTATATTA 58.199 33.333 0.00 0.00 45.69 0.98
5199 13302 7.201496 CCGTAGTGTCAAAAACGCTCTTATATT 60.201 37.037 0.00 0.00 45.69 1.28
5200 13303 6.255020 CCGTAGTGTCAAAAACGCTCTTATAT 59.745 38.462 0.00 0.00 45.69 0.86
5201 13304 5.574055 CCGTAGTGTCAAAAACGCTCTTATA 59.426 40.000 0.00 0.00 45.69 0.98
5202 13305 4.387862 CCGTAGTGTCAAAAACGCTCTTAT 59.612 41.667 0.00 0.00 45.69 1.73
5203 13306 3.737266 CCGTAGTGTCAAAAACGCTCTTA 59.263 43.478 0.00 0.00 45.69 2.10
5204 13307 2.542595 CCGTAGTGTCAAAAACGCTCTT 59.457 45.455 0.00 0.00 45.69 2.85
5205 13308 2.132762 CCGTAGTGTCAAAAACGCTCT 58.867 47.619 0.00 0.00 45.69 4.09
5206 13309 2.129607 TCCGTAGTGTCAAAAACGCTC 58.870 47.619 0.00 0.00 45.69 5.03
5208 13311 1.193874 CCTCCGTAGTGTCAAAAACGC 59.806 52.381 0.00 0.00 38.74 4.84
5209 13312 1.796459 CCCTCCGTAGTGTCAAAAACG 59.204 52.381 0.00 0.00 35.20 3.60
5210 13313 3.064931 CTCCCTCCGTAGTGTCAAAAAC 58.935 50.000 0.00 0.00 0.00 2.43
5211 13314 2.701951 ACTCCCTCCGTAGTGTCAAAAA 59.298 45.455 0.00 0.00 0.00 1.94
5212 13315 2.322658 ACTCCCTCCGTAGTGTCAAAA 58.677 47.619 0.00 0.00 0.00 2.44
5213 13316 2.005370 ACTCCCTCCGTAGTGTCAAA 57.995 50.000 0.00 0.00 0.00 2.69
5214 13317 2.821969 GTTACTCCCTCCGTAGTGTCAA 59.178 50.000 0.00 0.00 0.00 3.18
5215 13318 2.040813 AGTTACTCCCTCCGTAGTGTCA 59.959 50.000 0.00 0.00 0.00 3.58
5216 13319 2.422832 CAGTTACTCCCTCCGTAGTGTC 59.577 54.545 0.00 0.00 0.00 3.67
5217 13320 2.040813 TCAGTTACTCCCTCCGTAGTGT 59.959 50.000 0.00 0.00 0.00 3.55
5218 13321 2.683867 CTCAGTTACTCCCTCCGTAGTG 59.316 54.545 0.00 0.00 0.00 2.74
5219 13322 2.356947 CCTCAGTTACTCCCTCCGTAGT 60.357 54.545 0.00 0.00 0.00 2.73
5220 13323 2.299521 CCTCAGTTACTCCCTCCGTAG 58.700 57.143 0.00 0.00 0.00 3.51
5221 13324 1.064166 CCCTCAGTTACTCCCTCCGTA 60.064 57.143 0.00 0.00 0.00 4.02
5222 13325 0.324460 CCCTCAGTTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
5223 13326 0.324460 ACCCTCAGTTACTCCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
5224 13327 1.555533 CAACCCTCAGTTACTCCCTCC 59.444 57.143 0.00 0.00 36.18 4.30
5225 13328 2.028020 CACAACCCTCAGTTACTCCCTC 60.028 54.545 0.00 0.00 36.18 4.30
5226 13329 1.978580 CACAACCCTCAGTTACTCCCT 59.021 52.381 0.00 0.00 36.18 4.20
5227 13330 1.697982 ACACAACCCTCAGTTACTCCC 59.302 52.381 0.00 0.00 36.18 4.30
5228 13331 3.139077 CAACACAACCCTCAGTTACTCC 58.861 50.000 0.00 0.00 36.18 3.85
5229 13332 4.067972 TCAACACAACCCTCAGTTACTC 57.932 45.455 0.00 0.00 36.18 2.59
5230 13333 4.451900 CTTCAACACAACCCTCAGTTACT 58.548 43.478 0.00 0.00 36.18 2.24
5231 13334 3.564225 CCTTCAACACAACCCTCAGTTAC 59.436 47.826 0.00 0.00 36.18 2.50
5232 13335 3.456644 TCCTTCAACACAACCCTCAGTTA 59.543 43.478 0.00 0.00 36.18 2.24
5233 13336 2.241176 TCCTTCAACACAACCCTCAGTT 59.759 45.455 0.00 0.00 40.16 3.16
5234 13337 1.843851 TCCTTCAACACAACCCTCAGT 59.156 47.619 0.00 0.00 0.00 3.41
5235 13338 2.222027 GTCCTTCAACACAACCCTCAG 58.778 52.381 0.00 0.00 0.00 3.35
5236 13339 1.562008 TGTCCTTCAACACAACCCTCA 59.438 47.619 0.00 0.00 0.00 3.86
5237 13340 2.222027 CTGTCCTTCAACACAACCCTC 58.778 52.381 0.00 0.00 0.00 4.30
5238 13341 1.133792 CCTGTCCTTCAACACAACCCT 60.134 52.381 0.00 0.00 0.00 4.34
5239 13342 1.318576 CCTGTCCTTCAACACAACCC 58.681 55.000 0.00 0.00 0.00 4.11
5240 13343 1.318576 CCCTGTCCTTCAACACAACC 58.681 55.000 0.00 0.00 0.00 3.77
5322 13430 3.390135 TGCTTTCAGTTAGTTCCGTCAG 58.610 45.455 0.00 0.00 0.00 3.51
5361 13469 0.309922 CAGACCTGTGCTGCAACAAG 59.690 55.000 2.77 2.43 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.