AutoCloner

Multiple sequence alignment - TraesCS6A01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G090900	chr6A	100.000	4245	0	0	1	4245	59674604	59678848	0.000000e+00	7840.0
1	TraesCS6A01G090900	chr6A	88.879	2356	221	26	1395	3738	59344400	59346726	0.000000e+00	2861.0
2	TraesCS6A01G090900	chr6A	91.644	371	28	2	988	1355	59342794	59343164	1.050000e-140	510.0
3	TraesCS6A01G090900	chr6A	85.675	363	43	7	553	913	2867650	2867295	1.440000e-99	374.0
4	TraesCS6A01G090900	chr6A	93.443	61	4	0	4155	4215	59356549	59356609	1.630000e-14	91.6
5	TraesCS6A01G090900	chr6D	93.274	2825	149	26	935	3749	44735568	44738361	0.000000e+00	4126.0
6	TraesCS6A01G090900	chr6D	93.185	2832	136	26	928	3749	44505345	44508129	0.000000e+00	4108.0
7	TraesCS6A01G090900	chr6D	92.550	2792	153	27	928	3707	44862680	44865428	0.000000e+00	3952.0
8	TraesCS6A01G090900	chr6D	94.297	1964	103	7	1892	3851	44933957	44935915	0.000000e+00	2998.0
9	TraesCS6A01G090900	chr6D	90.754	1817	145	14	1395	3205	80290265	80292064	0.000000e+00	2403.0
10	TraesCS6A01G090900	chr6D	95.833	1392	34	12	928	2315	80296596	80297967	0.000000e+00	2228.0
11	TraesCS6A01G090900	chr6D	85.625	1593	205	17	1660	3242	45203575	45205153	0.000000e+00	1652.0
12	TraesCS6A01G090900	chr6D	87.606	944	78	16	4	910	44818792	44819733	0.000000e+00	1059.0
13	TraesCS6A01G090900	chr6D	93.928	527	26	4	4	524	44734024	44734550	0.000000e+00	791.0
14	TraesCS6A01G090900	chr6D	92.655	531	26	8	1	524	80294983	80295507	0.000000e+00	752.0
15	TraesCS6A01G090900	chr6D	94.737	380	6	5	3867	4245	44935906	44936272	2.850000e-161	579.0
16	TraesCS6A01G090900	chr6D	90.811	370	32	1	988	1355	44502855	44503224	1.060000e-135	494.0
17	TraesCS6A01G090900	chr6D	88.564	411	36	6	946	1346	44932774	44933183	4.930000e-134	488.0
18	TraesCS6A01G090900	chr6D	87.417	151	9	6	1395	1541	44933343	44933487	9.440000e-37	165.0
19	TraesCS6A01G090900	chr6D	82.014	139	15	5	4082	4215	44508323	44508456	4.490000e-20	110.0
20	TraesCS6A01G090900	chr6D	82.014	139	15	5	4082	4215	44738555	44738688	4.490000e-20	110.0
21	TraesCS6A01G090900	chr6B	92.204	1860	117	13	1892	3738	113771078	113772922	0.000000e+00	2606.0
22	TraesCS6A01G090900	chr6B	88.557	2141	206	23	1565	3691	113655924	113658039	0.000000e+00	2560.0
23	TraesCS6A01G090900	chr6B	90.779	911	44	10	992	1895	113770079	113770956	0.000000e+00	1181.0
24	TraesCS6A01G090900	chr6B	91.081	370	31	1	988	1355	113649490	113649859	2.280000e-137	499.0
25	TraesCS6A01G090900	chr6B	86.486	185	15	8	1395	1577	113652443	113652619	1.200000e-45	195.0
26	TraesCS6A01G090900	chr5B	83.586	396	55	9	547	939	512982236	512982624	3.120000e-96	363.0
27	TraesCS6A01G090900	chr5B	84.409	372	49	8	547	913	61558543	61558910	1.450000e-94	357.0
28	TraesCS6A01G090900	chr2B	84.252	381	50	9	537	913	98394218	98393844	3.120000e-96	363.0
29	TraesCS6A01G090900	chr2B	84.741	367	47	8	553	913	702728423	702728060	4.040000e-95	359.0
30	TraesCS6A01G090900	chr4A	84.741	367	47	9	553	913	304782529	304782166	4.040000e-95	359.0
31	TraesCS6A01G090900	chr4A	84.741	367	47	8	553	913	403172184	403171821	4.040000e-95	359.0
32	TraesCS6A01G090900	chr3A	84.450	373	49	8	547	913	219342503	219342872	4.040000e-95	359.0
33	TraesCS6A01G090900	chr3A	84.450	373	49	8	547	913	334784524	334784893	4.040000e-95	359.0
34	TraesCS6A01G090900	chr2D	84.013	319	30	7	624	939	644097620	644097920	1.930000e-73	287.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G090900	chr6A	59674604	59678848	4244	False	7840.000000	7840	100.000000	1	4245	1	chr6A.!!$F2	4244
1	TraesCS6A01G090900	chr6A	59342794	59346726	3932	False	1685.500000	2861	90.261500	988	3738	2	chr6A.!!$F3	2750
2	TraesCS6A01G090900	chr6D	44862680	44865428	2748	False	3952.000000	3952	92.550000	928	3707	1	chr6D.!!$F2	2779
3	TraesCS6A01G090900	chr6D	80290265	80297967	7702	False	1794.333333	2403	93.080667	1	3205	3	chr6D.!!$F7	3204
4	TraesCS6A01G090900	chr6D	44734024	44738688	4664	False	1675.666667	4126	89.738667	4	4215	3	chr6D.!!$F5	4211
5	TraesCS6A01G090900	chr6D	45203575	45205153	1578	False	1652.000000	1652	85.625000	1660	3242	1	chr6D.!!$F3	1582
6	TraesCS6A01G090900	chr6D	44502855	44508456	5601	False	1570.666667	4108	88.670000	928	4215	3	chr6D.!!$F4	3287
7	TraesCS6A01G090900	chr6D	44818792	44819733	941	False	1059.000000	1059	87.606000	4	910	1	chr6D.!!$F1	906
8	TraesCS6A01G090900	chr6D	44932774	44936272	3498	False	1057.500000	2998	91.253750	946	4245	4	chr6D.!!$F6	3299
9	TraesCS6A01G090900	chr6B	113770079	113772922	2843	False	1893.500000	2606	91.491500	992	3738	2	chr6B.!!$F2	2746
10	TraesCS6A01G090900	chr6B	113649490	113658039	8549	False	1084.666667	2560	88.708000	988	3691	3	chr6B.!!$F1	2703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
686	5467	0.745486	GTTAGTAAACGGGCCGGCAT	60.745	55.000	31.78	17.77	0.00	4.40	F
1248	6711	0.610174	TCTCGCAGCAACAGATCCTT	59.390	50.000	0.00	0.00	0.00	3.36	F
2531	14165	1.066787	CGGAGAAGGTCCTGGAAGAAC	60.067	57.143	0.00	0.00	44.35	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2531	14165	1.376942	CTGGAGCCACCTTCTGCAG	60.377	63.158	7.63	7.63	42.13	4.41	R
3081	14715	0.095935	CACAAGCTCTTTCGATGGCG	59.904	55.000	0.00	0.00	39.35	5.69	R
4022	15720	0.985490	AGCCCTTCCCTCCTGCTAAG	60.985	60.000	0.00	0.00	0.00	2.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
108	4827	6.758886	GGAGATGTCAACACGAGAAATCTAAT	59.241	38.462	0.00	0.00	39.57	1.73
110	4829	9.302345	GAGATGTCAACACGAGAAATCTAATAA	57.698	33.333	0.00	0.00	39.57	1.40
141	4868	2.264005	TGGTGTTAGATGCACGGTTT	57.736	45.000	0.00	0.00	37.70	3.27
199	4931	3.398406	ACAAGTGACGCACATACAATGA	58.602	40.909	11.58	0.00	36.74	2.57
211	4943	4.463070	ACATACAATGATGTGCAGCCATA	58.537	39.130	0.00	0.00	40.84	2.74
223	4955	2.561858	TGCAGCCATATGTCAAAAGCAA	59.438	40.909	1.24	0.00	0.00	3.91
382	5114	7.995488	TGGAATACCAATTTTTGACACCAAAAT	59.005	29.630	4.46	0.00	45.00	1.82
542	5303	1.838077	GCAGAACCACCTATACCTGGT	59.162	52.381	4.05	4.05	42.97	4.00
580	5361	1.408127	CCCAATGTAATCGTGCCTGGA	60.408	52.381	0.00	0.00	0.00	3.86
619	5400	4.534500	AGGGCATGATTATTATACGGGTCA	59.466	41.667	0.00	0.00	0.00	4.02
636	5417	3.952508	ATGTCGTGCCAGCCCACA	61.953	61.111	1.48	0.00	35.47	4.17
662	5443	3.854669	CTCCAGGCCTAGGCACGG	61.855	72.222	34.09	30.30	44.11	4.94
686	5467	0.745486	GTTAGTAAACGGGCCGGCAT	60.745	55.000	31.78	17.77	0.00	4.40
724	5505	1.753073	GCTGGGCTGCATATTTTCAGT	59.247	47.619	0.50	0.00	33.09	3.41
753	5534	5.852282	GGCTGATTTTTAGGCCTATTGAA	57.148	39.130	14.74	9.23	41.20	2.69
820	5601	3.547649	AAAAGAATAAACGGTCCGTGC	57.452	42.857	19.67	5.58	39.99	5.34
821	5602	1.445871	AAGAATAAACGGTCCGTGCC	58.554	50.000	19.67	5.72	39.99	5.01
907	5688	3.784412	CGTTTAGCCCGTGCCGTG	61.784	66.667	0.00	0.00	38.69	4.94
908	5689	4.097863	GTTTAGCCCGTGCCGTGC	62.098	66.667	0.00	0.00	38.69	5.34
930	5711	3.775654	GTGCTCGTGGGCTAGCCT	61.776	66.667	32.18	0.00	37.97	4.58
1132	6595	4.301505	GCTTTGAGCCATCGTGGA	57.698	55.556	8.04	0.00	40.96	4.02
1248	6711	0.610174	TCTCGCAGCAACAGATCCTT	59.390	50.000	0.00	0.00	0.00	3.36
1374	6847	2.791004	CGATTTACCGGTCACCGTATTC	59.209	50.000	16.87	3.77	46.80	1.75
1592	13059	7.617041	AGTTAACAGGCTTTATTGCTTCTAG	57.383	36.000	8.61	0.00	0.00	2.43
1726	13198	9.357161	ACCAATAATGTCTACCACAAAAACTAA	57.643	29.630	0.00	0.00	38.97	2.24
1733	13205	7.822658	TGTCTACCACAAAAACTAATTATGGC	58.177	34.615	0.00	0.00	29.30	4.40
1825	13298	1.472878	CACACTCTACTGCTTAGCGGA	59.527	52.381	20.91	4.58	38.46	5.54
1963	13590	4.927049	AGGTTCAGATGGTGATGACATTT	58.073	39.130	0.00	0.00	34.17	2.32
2243	13877	7.363443	GGAGCCTTCCAGATATATCTAAGTCAC	60.363	44.444	14.92	5.32	43.45	3.67
2531	14165	1.066787	CGGAGAAGGTCCTGGAAGAAC	60.067	57.143	0.00	0.00	44.35	3.01
2861	14495	3.003068	GGAGTGGCAATCGAATCATGAAG	59.997	47.826	9.03	0.00	0.00	3.02
2963	14597	2.362120	GCACAATGGCTCAGGGCT	60.362	61.111	0.00	0.00	41.46	5.19
2969	14603	2.718487	AATGGCTCAGGGCTGTTGCA	62.718	55.000	0.00	0.00	41.91	4.08
3272	14907	4.335315	ACGAAATTGCTGAAAAGTGTCTCA	59.665	37.500	0.00	0.00	0.00	3.27
3439	15074	7.119709	TGATGAAATTGATGATCTTTGCCAT	57.880	32.000	0.00	0.00	0.00	4.40
3453	15088	1.001641	GCCATCCCTTGCTGTCACT	60.002	57.895	0.00	0.00	0.00	3.41
3470	15105	6.201806	GCTGTCACTGGATTTCTGTATCATAC	59.798	42.308	0.00	0.00	0.00	2.39
3479	15115	7.661437	TGGATTTCTGTATCATACTACATTGCC	59.339	37.037	0.00	0.00	31.49	4.52
3503	15148	7.610865	CCAGGTCTTTTGGCATTTTAGATTTA	58.389	34.615	0.00	0.00	0.00	1.40
3526	15171	0.471591	CTCTGCTAGCTCCCCCTGAT	60.472	60.000	17.23	0.00	0.00	2.90
3536	15183	2.711547	GCTCCCCCTGATTATGGTAACT	59.288	50.000	0.00	0.00	37.61	2.24
3563	15210	4.866439	ATCAATGGTGCTAACACGATGGAA	60.866	41.667	2.87	0.00	44.95	3.53
3620	15275	6.466097	GCTTTTAATTTACTCATGCAGTCGTC	59.534	38.462	0.00	0.00	36.43	4.20
3748	15405	6.349300	TCCAGCAAATAGAAAAGCTAGGTAG	58.651	40.000	0.00	0.00	35.19	3.18
3778	15476	2.435938	GTTCCTCGCCGGCAATGA	60.436	61.111	28.98	16.04	0.00	2.57
3790	15488	0.389426	GGCAATGACGGTCGTACTGT	60.389	55.000	2.78	0.00	41.12	3.55
3799	15497	1.076332	GGTCGTACTGTTGCCACATC	58.924	55.000	0.00	0.00	30.39	3.06
3839	15537	0.802222	CAGCCACCGTCGATGTAGTG	60.802	60.000	3.52	5.54	0.00	2.74
3841	15539	1.872234	CCACCGTCGATGTAGTGCG	60.872	63.158	3.52	0.00	0.00	5.34
3842	15540	1.872234	CACCGTCGATGTAGTGCGG	60.872	63.158	6.81	6.81	46.83	5.69
3843	15541	2.488355	CCGTCGATGTAGTGCGGT	59.512	61.111	3.52	0.00	37.87	5.68
3844	15542	1.872234	CCGTCGATGTAGTGCGGTG	60.872	63.158	3.52	0.00	37.87	4.94
3845	15543	1.872234	CGTCGATGTAGTGCGGTGG	60.872	63.158	0.00	0.00	0.00	4.61
3846	15544	1.214589	GTCGATGTAGTGCGGTGGT	59.785	57.895	0.00	0.00	0.00	4.16
3847	15545	1.076533	GTCGATGTAGTGCGGTGGTG	61.077	60.000	0.00	0.00	0.00	4.17
3861	15559	2.112297	GGTGCGGTCCTTCCACAA	59.888	61.111	6.54	0.00	35.57	3.33
3863	15561	2.112297	TGCGGTCCTTCCACAACC	59.888	61.111	0.00	0.00	35.57	3.77
3906	15604	1.282930	GAGAAGACCGACGTTGTGGC	61.283	60.000	1.30	0.00	0.00	5.01
3907	15605	2.654912	GAAGACCGACGTTGTGGCG	61.655	63.158	1.30	0.00	37.94	5.69
4016	15714	1.141053	GTGGGTTGGTCTGTTCTGTCT	59.859	52.381	0.00	0.00	0.00	3.41
4017	15715	1.140852	TGGGTTGGTCTGTTCTGTCTG	59.859	52.381	0.00	0.00	0.00	3.51
4021	15719	0.681733	TGGTCTGTTCTGTCTGCCTC	59.318	55.000	0.00	0.00	0.00	4.70
4022	15720	0.036858	GGTCTGTTCTGTCTGCCTCC	60.037	60.000	0.00	0.00	0.00	4.30
4067	15765	2.438434	GAGATGTTGGCCGGTGGG	60.438	66.667	1.90	0.00	0.00	4.61
4079	15777	2.446036	GGTGGGGCGGAGGAGTAT	60.446	66.667	0.00	0.00	0.00	2.12
4080	15778	2.508751	GGTGGGGCGGAGGAGTATC	61.509	68.421	0.00	0.00	0.00	2.24
4087	15785	1.614413	GGCGGAGGAGTATCTAACAGG	59.386	57.143	0.00	0.00	33.73	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
108	4827	6.939132	TCTAACACCAAACCGTTTTCATTA	57.061	33.333	0.00	0.00	0.00	1.90
110	4829	5.768317	CATCTAACACCAAACCGTTTTCAT	58.232	37.500	0.00	0.00	0.00	2.57
162	4893	5.585047	GTCACTTGTTGTAACCTGAGAGTTT	59.415	40.000	0.00	0.00	0.00	2.66
199	4931	3.429822	GCTTTTGACATATGGCTGCACAT	60.430	43.478	10.60	5.45	34.90	3.21
205	4937	5.337009	CCTTCTTTGCTTTTGACATATGGCT	60.337	40.000	10.60	0.00	0.00	4.75
211	4943	5.118286	CCAAACCTTCTTTGCTTTTGACAT	58.882	37.500	0.00	0.00	30.23	3.06
223	4955	2.136026	AGGTCACTCCCAAACCTTCTT	58.864	47.619	0.00	0.00	40.53	2.52
274	5006	6.556495	ACCTATCTCATACAGACCAATCATGT	59.444	38.462	0.00	0.00	32.26	3.21
373	5105	8.757982	ATCTAGAGCATAATTGATTTTGGTGT	57.242	30.769	0.00	3.36	31.41	4.16
564	5345	0.179084	CGGTCCAGGCACGATTACAT	60.179	55.000	0.00	0.00	0.00	2.29
565	5346	1.216977	CGGTCCAGGCACGATTACA	59.783	57.895	0.00	0.00	0.00	2.41
595	5376	5.722441	TGACCCGTATAATAATCATGCCCTA	59.278	40.000	0.00	0.00	0.00	3.53
602	5383	6.153756	CACGACATGACCCGTATAATAATCA	58.846	40.000	0.00	0.00	37.23	2.57
619	5400	3.272364	ATGTGGGCTGGCACGACAT	62.272	57.895	2.88	5.33	0.00	3.06
700	5481	0.680921	AAATATGCAGCCCAGCGTGT	60.681	50.000	0.00	0.00	37.31	4.49
724	5505	2.825532	GCCTAAAAATCAGCCCAACAGA	59.174	45.455	0.00	0.00	0.00	3.41
832	5613	3.314331	CCTGGAGCCTGGACACGT	61.314	66.667	6.60	0.00	37.23	4.49
914	5695	3.774528	CAGGCTAGCCCACGAGCA	61.775	66.667	30.42	0.00	45.48	4.26
915	5696	2.804828	AAACAGGCTAGCCCACGAGC	62.805	60.000	30.42	3.20	43.19	5.03
917	5698	1.003839	CAAACAGGCTAGCCCACGA	60.004	57.895	30.42	0.00	36.58	4.35
919	5700	4.002797	CCAAACAGGCTAGCCCAC	57.997	61.111	30.42	5.67	36.58	4.61
928	5709	3.279434	GTTCTATAGGTGGCCAAACAGG	58.721	50.000	7.24	0.00	41.84	4.00
929	5710	3.279434	GGTTCTATAGGTGGCCAAACAG	58.721	50.000	7.24	0.27	0.00	3.16
930	5711	2.645297	TGGTTCTATAGGTGGCCAAACA	59.355	45.455	7.24	0.00	0.00	2.83
974	6431	1.379710	TGCCTGCCTGTGTTGTTGT	60.380	52.632	0.00	0.00	0.00	3.32
1125	6588	1.040893	TGTACAGCGGGATCCACGAT	61.041	55.000	22.08	15.30	0.00	3.73
1132	6595	1.689273	GATCCTCTTGTACAGCGGGAT	59.311	52.381	18.86	18.86	37.47	3.85
1261	6724	7.049754	TCGTTCTTCTTAAACCTGGTTAGTTT	58.950	34.615	13.37	0.00	40.43	2.66
1558	9708	4.351874	AGCCTGTTAACTAGAGCACAAA	57.648	40.909	7.22	0.00	0.00	2.83
1566	13033	7.617041	AGAAGCAATAAAGCCTGTTAACTAG	57.383	36.000	7.22	2.92	34.23	2.57
1592	13059	3.254166	TCAAAATCTTTCCAGCAGTCTGC	59.746	43.478	17.48	17.48	45.46	4.26
1726	13198	7.582719	TGTTTAGGACCATTCTTAGCCATAAT	58.417	34.615	0.00	0.00	0.00	1.28
1733	13205	9.892130	ATTAACTCTGTTTAGGACCATTCTTAG	57.108	33.333	0.00	0.00	0.00	2.18
1825	13298	5.588958	TTCATGTGTGAGAATCGAGATCT	57.411	39.130	0.00	0.00	38.61	2.75
1963	13590	8.918202	ACATAAAAAGAACATTAGGACAGACA	57.082	30.769	0.00	0.00	0.00	3.41
2531	14165	1.376942	CTGGAGCCACCTTCTGCAG	60.377	63.158	7.63	7.63	42.13	4.41
2737	14371	5.278660	GCACTTCTTGAATGTGGACTTCAAT	60.279	40.000	11.72	0.00	40.69	2.57
2963	14597	2.112297	GGTCCCCTCGTTGCAACA	59.888	61.111	28.01	14.60	0.00	3.33
3081	14715	0.095935	CACAAGCTCTTTCGATGGCG	59.904	55.000	0.00	0.00	39.35	5.69
3114	14748	4.207891	TCCTTTGACTCTTCATAGTGCC	57.792	45.455	0.00	0.00	30.86	5.01
3272	14907	4.087182	TCCTCTTTCTATGTCAACCGTCT	58.913	43.478	0.00	0.00	0.00	4.18
3439	15074	1.067295	AATCCAGTGACAGCAAGGGA	58.933	50.000	0.00	0.00	34.27	4.20
3453	15088	7.661437	GGCAATGTAGTATGATACAGAAATCCA	59.339	37.037	5.28	0.00	38.96	3.41
3470	15105	3.855689	CCAAAAGACCTGGCAATGTAG	57.144	47.619	0.00	0.00	0.00	2.74
3479	15115	9.657419	ATTAAATCTAAAATGCCAAAAGACCTG	57.343	29.630	0.00	0.00	0.00	4.00
3526	15171	7.573710	AGCACCATTGATAGAAGTTACCATAA	58.426	34.615	0.00	0.00	0.00	1.90
3536	15183	5.079689	TCGTGTTAGCACCATTGATAGAA	57.920	39.130	3.94	0.00	42.39	2.10
3620	15275	2.284263	TGTGCTATCAAGTCGAGCAG	57.716	50.000	0.00	0.00	46.39	4.24
3748	15405	2.070639	AGGAACTCAGGCCAGAACC	58.929	57.895	5.01	6.55	0.00	3.62
3778	15476	3.131155	TGGCAACAGTACGACCGT	58.869	55.556	0.00	0.00	46.17	4.83
3790	15488	1.965930	GGTGAGTGCGATGTGGCAA	60.966	57.895	0.00	0.00	45.93	4.52
3829	15527	1.214325	CACCACCGCACTACATCGA	59.786	57.895	0.00	0.00	0.00	3.59
3841	15539	3.948719	TGGAAGGACCGCACCACC	61.949	66.667	3.79	0.00	42.61	4.61
3863	15561	3.976701	ATCTTTCCGCACCCGCCTG	62.977	63.158	0.00	0.00	33.11	4.85
3914	15612	2.044053	ATGACCCCATGTTGGCCG	60.044	61.111	0.00	0.00	35.79	6.13
3923	15621	1.154921	CCCAACAACCATGACCCCA	59.845	57.895	0.00	0.00	0.00	4.96
4021	15719	1.988982	GCCCTTCCCTCCTGCTAAGG	61.989	65.000	0.00	0.00	46.06	2.69
4022	15720	0.985490	AGCCCTTCCCTCCTGCTAAG	60.985	60.000	0.00	0.00	0.00	2.18
4062	15760	2.446036	ATACTCCTCCGCCCCACC	60.446	66.667	0.00	0.00	0.00	4.61
4067	15765	1.614413	CCTGTTAGATACTCCTCCGCC	59.386	57.143	0.00	0.00	0.00	6.13
4078	15776	2.644798	AGTGGAAACTGGCCTGTTAGAT	59.355	45.455	26.18	12.67	0.00	1.98
4079	15777	2.054799	AGTGGAAACTGGCCTGTTAGA	58.945	47.619	26.18	11.72	0.00	2.10
4080	15778	2.568623	AGTGGAAACTGGCCTGTTAG	57.431	50.000	26.18	7.38	0.00	2.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.