Multiple sequence alignment - TraesCS6A01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G089000 chr6A 100.000 3529 0 0 1649 5177 57683430 57679902 0.000000e+00 6517.0
1 TraesCS6A01G089000 chr6A 100.000 1315 0 0 1 1315 57685078 57683764 0.000000e+00 2429.0
2 TraesCS6A01G089000 chr6A 80.603 232 23 11 1911 2123 71440750 71440522 5.370000e-35 159.0
3 TraesCS6A01G089000 chr6B 92.706 2783 112 30 2124 4871 93424036 93421310 0.000000e+00 3930.0
4 TraesCS6A01G089000 chr6B 94.196 448 13 4 879 1314 93424754 93424308 0.000000e+00 671.0
5 TraesCS6A01G089000 chr6B 87.442 215 12 5 1658 1871 93424244 93424044 3.120000e-57 233.0
6 TraesCS6A01G089000 chr6B 86.923 130 13 3 5021 5148 93421224 93421097 5.400000e-30 143.0
7 TraesCS6A01G089000 chr6B 89.062 64 7 0 5 68 93432292 93432229 4.300000e-11 80.5
8 TraesCS6A01G089000 chr6B 91.304 46 4 0 5132 5177 93420448 93420403 4.330000e-06 63.9
9 TraesCS6A01G089000 chrUn 95.586 2107 77 6 2124 4224 19250480 19252576 0.000000e+00 3362.0
10 TraesCS6A01G089000 chrUn 91.945 807 51 11 518 1315 19249388 19250189 0.000000e+00 1118.0
11 TraesCS6A01G089000 chrUn 88.551 559 49 8 4625 5177 19271478 19272027 0.000000e+00 664.0
12 TraesCS6A01G089000 chrUn 91.921 458 27 7 4589 5045 19272329 19272777 2.630000e-177 632.0
13 TraesCS6A01G089000 chrUn 90.097 414 28 8 4221 4630 19266890 19267294 4.590000e-145 525.0
14 TraesCS6A01G089000 chrUn 84.800 500 62 11 5 492 19248095 19248592 1.680000e-134 490.0
15 TraesCS6A01G089000 chrUn 95.536 224 8 2 1650 1871 19250249 19250472 1.770000e-94 357.0
16 TraesCS6A01G089000 chrUn 94.737 152 5 3 5028 5177 19480543 19480693 3.120000e-57 233.0
17 TraesCS6A01G089000 chr1B 86.197 1391 142 27 2884 4251 61900687 61902050 0.000000e+00 1459.0
18 TraesCS6A01G089000 chr1B 83.439 628 77 18 2140 2759 61900001 61900609 4.530000e-155 558.0
19 TraesCS6A01G089000 chr1B 90.584 308 18 6 1012 1314 61899386 61899687 1.040000e-106 398.0
20 TraesCS6A01G089000 chr1B 84.878 205 24 3 2671 2869 653845614 653845411 3.160000e-47 200.0
21 TraesCS6A01G089000 chr1B 79.444 180 21 11 2810 2987 61900426 61900591 4.240000e-21 113.0
22 TraesCS6A01G089000 chr1B 90.789 76 7 0 2669 2744 653851174 653851099 9.170000e-18 102.0
23 TraesCS6A01G089000 chr1B 100.000 38 0 0 1873 1910 31010982 31011019 2.590000e-08 71.3
24 TraesCS6A01G089000 chr1D 85.946 1359 131 33 2884 4223 41750730 41752047 0.000000e+00 1397.0
25 TraesCS6A01G089000 chr1D 81.102 635 91 21 2141 2759 41750038 41750659 1.010000e-131 481.0
26 TraesCS6A01G089000 chr1D 91.558 308 20 3 1010 1314 41749612 41749916 2.230000e-113 420.0
27 TraesCS6A01G089000 chr1A 89.072 851 78 9 3254 4098 41749150 41749991 0.000000e+00 1042.0
28 TraesCS6A01G089000 chr1A 80.685 642 96 20 2141 2760 41748012 41748647 1.690000e-129 473.0
29 TraesCS6A01G089000 chr1A 90.823 316 18 7 1002 1306 41747506 41747821 3.730000e-111 412.0
30 TraesCS6A01G089000 chr1A 85.345 348 27 14 2894 3239 41748722 41749047 6.420000e-89 339.0
31 TraesCS6A01G089000 chr1A 90.476 105 6 3 1910 2010 319309456 319309560 9.040000e-28 135.0
32 TraesCS6A01G089000 chr7D 80.645 403 51 16 3018 3406 577881815 577882204 2.360000e-73 287.0
33 TraesCS6A01G089000 chr7D 78.624 407 59 16 3018 3406 577919785 577920181 1.440000e-60 244.0
34 TraesCS6A01G089000 chr7A 91.542 201 14 1 1108 1308 692500183 692500380 1.840000e-69 274.0
35 TraesCS6A01G089000 chr7A 80.422 332 51 11 2324 2645 670164799 670165126 1.860000e-59 241.0
36 TraesCS6A01G089000 chr7B 82.540 315 36 12 3103 3406 641366859 641367165 5.140000e-65 259.0
37 TraesCS6A01G089000 chr7B 78.588 425 59 17 3021 3425 641744197 641743785 8.610000e-63 252.0
38 TraesCS6A01G089000 chr7B 100.000 38 0 0 1873 1910 451093740 451093703 2.590000e-08 71.3
39 TraesCS6A01G089000 chr3B 83.186 226 19 8 1910 2118 257064476 257064699 6.840000e-44 189.0
40 TraesCS6A01G089000 chr3B 85.606 132 10 7 1910 2033 194753998 194754128 4.210000e-26 130.0
41 TraesCS6A01G089000 chr3B 100.000 38 0 0 1873 1910 819562093 819562130 2.590000e-08 71.3
42 TraesCS6A01G089000 chr2B 81.739 230 23 10 1910 2123 477599276 477599050 1.920000e-39 174.0
43 TraesCS6A01G089000 chr2B 89.431 123 9 3 1910 2030 708169169 708169049 8.980000e-33 152.0
44 TraesCS6A01G089000 chr2B 100.000 37 0 0 1874 1910 663822847 663822883 9.300000e-08 69.4
45 TraesCS6A01G089000 chr2B 100.000 36 0 0 1875 1910 477599376 477599341 3.350000e-07 67.6
46 TraesCS6A01G089000 chr2B 100.000 36 0 0 1875 1910 754491458 754491423 3.350000e-07 67.6
47 TraesCS6A01G089000 chr3D 88.525 122 10 4 1910 2030 308292910 308292792 1.500000e-30 145.0
48 TraesCS6A01G089000 chr3D 97.436 39 0 1 1873 1910 590764958 590764996 1.200000e-06 65.8
49 TraesCS6A01G089000 chr3D 91.892 37 3 0 4484 4520 593683198 593683162 9.000000e-03 52.8
50 TraesCS6A01G089000 chr2D 87.302 126 13 3 1916 2040 405424576 405424453 1.940000e-29 141.0
51 TraesCS6A01G089000 chr2D 87.805 123 11 2 1910 2030 641082356 641082236 1.940000e-29 141.0
52 TraesCS6A01G089000 chr2A 100.000 38 0 0 1873 1910 763278444 763278407 2.590000e-08 71.3
53 TraesCS6A01G089000 chr2A 100.000 36 0 0 1875 1910 492826417 492826382 3.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G089000 chr6A 57679902 57685078 5176 True 4473.00 6517 100.00000 1 5177 2 chr6A.!!$R2 5176
1 TraesCS6A01G089000 chr6B 93420403 93424754 4351 True 1008.18 3930 90.51420 879 5177 5 chr6B.!!$R2 4298
2 TraesCS6A01G089000 chrUn 19248095 19252576 4481 False 1331.75 3362 91.96675 5 4224 4 chrUn.!!$F3 4219
3 TraesCS6A01G089000 chrUn 19271478 19272777 1299 False 648.00 664 90.23600 4589 5177 2 chrUn.!!$F4 588
4 TraesCS6A01G089000 chr1B 61899386 61902050 2664 False 632.00 1459 84.91600 1012 4251 4 chr1B.!!$F2 3239
5 TraesCS6A01G089000 chr1D 41749612 41752047 2435 False 766.00 1397 86.20200 1010 4223 3 chr1D.!!$F1 3213
6 TraesCS6A01G089000 chr1A 41747506 41749991 2485 False 566.50 1042 86.48125 1002 4098 4 chr1A.!!$F2 3096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 166 0.040958 GGCAAGCGTCACAAACAGAG 60.041 55.000 0.00 0.00 0.00 3.35 F
516 527 0.109781 CCAGTCCGGACGCATTTTTG 60.110 55.000 28.26 18.42 36.56 2.44 F
2073 2902 0.033503 TAGGCATCCTCTGTCGGACA 60.034 55.000 10.88 10.88 35.52 4.02 F
2109 2938 0.109342 AAATATGGGCGCTGGGAGAG 59.891 55.000 7.64 0.00 0.00 3.20 F
2118 2947 0.249405 CGCTGGGAGAGATCTGCTTC 60.249 60.000 0.00 0.00 34.50 3.86 F
2647 3508 1.078143 CCCTGGGCTGAGTACAAGC 60.078 63.158 0.00 11.14 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2883 0.033503 TGTCCGACAGAGGATGCCTA 60.034 55.000 0.00 0.0 43.04 3.93 R
2090 2919 0.109342 CTCTCCCAGCGCCCATATTT 59.891 55.000 2.29 0.0 0.00 1.40 R
3714 4697 1.822990 CTTGCCTTGCTGACATCCAAT 59.177 47.619 0.00 0.0 0.00 3.16 R
4086 5075 2.493035 TGCGCCATATCATAACCAGTG 58.507 47.619 4.18 0.0 0.00 3.66 R
4146 5143 8.887036 AACATTTCCCAAACTTCTGAAAATAC 57.113 30.769 0.00 0.0 31.20 1.89 R
4313 5312 0.038159 GGTTCACGGTCACCAGAGAG 60.038 60.000 0.00 0.0 32.74 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.108615 CGTGAGGGCCAACTCTACAG 60.109 60.000 6.18 0.00 38.32 2.74
34 35 0.835971 TGAGGGCCAACTCTACAGCA 60.836 55.000 6.18 0.00 38.32 4.41
35 36 0.543749 GAGGGCCAACTCTACAGCAT 59.456 55.000 6.18 0.00 34.65 3.79
36 37 0.254178 AGGGCCAACTCTACAGCATG 59.746 55.000 6.18 0.00 46.00 4.06
60 61 2.139323 AGACGTGGCATAGTAGTCCA 57.861 50.000 0.00 0.00 32.70 4.02
62 63 3.031736 AGACGTGGCATAGTAGTCCAAT 58.968 45.455 0.00 0.00 32.70 3.16
64 65 4.037684 AGACGTGGCATAGTAGTCCAATAC 59.962 45.833 0.00 0.00 32.70 1.89
66 67 3.004002 CGTGGCATAGTAGTCCAATACGA 59.996 47.826 0.00 0.00 0.00 3.43
67 68 4.296690 GTGGCATAGTAGTCCAATACGAC 58.703 47.826 0.00 0.00 34.20 4.34
68 69 3.955551 TGGCATAGTAGTCCAATACGACA 59.044 43.478 0.00 0.00 36.27 4.35
69 70 4.037565 TGGCATAGTAGTCCAATACGACAG 59.962 45.833 0.00 0.00 36.27 3.51
78 79 5.443283 AGTCCAATACGACAGGTGATAGTA 58.557 41.667 0.00 0.00 35.07 1.82
79 80 6.069331 AGTCCAATACGACAGGTGATAGTAT 58.931 40.000 0.00 0.00 35.07 2.12
80 81 6.207025 AGTCCAATACGACAGGTGATAGTATC 59.793 42.308 2.97 2.97 35.07 2.24
81 82 5.475909 TCCAATACGACAGGTGATAGTATCC 59.524 44.000 7.69 0.00 0.00 2.59
82 83 5.477291 CCAATACGACAGGTGATAGTATCCT 59.523 44.000 7.69 0.00 0.00 3.24
83 84 6.015350 CCAATACGACAGGTGATAGTATCCTT 60.015 42.308 7.69 0.00 0.00 3.36
84 85 7.176165 CCAATACGACAGGTGATAGTATCCTTA 59.824 40.741 7.69 0.00 0.00 2.69
85 86 8.573885 CAATACGACAGGTGATAGTATCCTTAA 58.426 37.037 7.69 0.00 0.00 1.85
86 87 8.880991 ATACGACAGGTGATAGTATCCTTAAT 57.119 34.615 7.69 0.00 0.00 1.40
90 101 6.982852 ACAGGTGATAGTATCCTTAATCGTG 58.017 40.000 7.69 5.95 0.00 4.35
93 104 6.954684 AGGTGATAGTATCCTTAATCGTGGAT 59.045 38.462 7.69 0.00 44.42 3.41
99 110 9.712305 ATAGTATCCTTAATCGTGGATTCAAAG 57.288 33.333 0.00 0.00 42.47 2.77
106 117 1.616865 TCGTGGATTCAAAGACGAGGT 59.383 47.619 0.00 0.00 35.99 3.85
111 122 2.151202 GATTCAAAGACGAGGTTGCCA 58.849 47.619 0.00 0.00 0.00 4.92
120 131 0.108615 CGAGGTTGCCAGAGTCGAAT 60.109 55.000 0.00 0.00 32.32 3.34
141 152 1.135046 CGATGACATAGCGAGGCAAG 58.865 55.000 0.00 0.00 41.60 4.01
146 157 1.519234 CATAGCGAGGCAAGCGTCA 60.519 57.895 14.18 0.00 40.04 4.35
148 159 2.225791 ATAGCGAGGCAAGCGTCACA 62.226 55.000 14.18 0.12 40.04 3.58
151 162 1.082756 CGAGGCAAGCGTCACAAAC 60.083 57.895 14.18 0.00 0.00 2.93
155 166 0.040958 GGCAAGCGTCACAAACAGAG 60.041 55.000 0.00 0.00 0.00 3.35
158 169 2.348591 GCAAGCGTCACAAACAGAGTAC 60.349 50.000 0.00 0.00 0.00 2.73
165 176 3.997021 GTCACAAACAGAGTACATCCTGG 59.003 47.826 12.46 0.00 34.85 4.45
166 177 3.646162 TCACAAACAGAGTACATCCTGGT 59.354 43.478 12.46 5.16 34.85 4.00
170 181 0.747255 CAGAGTACATCCTGGTCGGG 59.253 60.000 0.00 0.00 0.00 5.14
198 209 6.147821 CGACAATTGTGTAATTTGACTCCTCT 59.852 38.462 17.58 0.00 38.41 3.69
236 247 2.192664 TTCGGCCTAAGATGCAAACA 57.807 45.000 0.00 0.00 0.00 2.83
240 251 2.171003 GGCCTAAGATGCAAACAGGTT 58.829 47.619 0.00 0.00 0.00 3.50
307 318 5.129485 ACATAGACTACAATAGCCTTGCACT 59.871 40.000 0.00 0.00 0.00 4.40
321 332 1.301401 GCACTCACCACGGCTTACA 60.301 57.895 0.00 0.00 0.00 2.41
322 333 1.566018 GCACTCACCACGGCTTACAC 61.566 60.000 0.00 0.00 0.00 2.90
324 335 0.249741 ACTCACCACGGCTTACACAC 60.250 55.000 0.00 0.00 0.00 3.82
381 392 5.881923 TGTACTTTACTCCAGTTGGTCTT 57.118 39.130 0.00 0.00 36.34 3.01
384 395 5.881923 ACTTTACTCCAGTTGGTCTTGTA 57.118 39.130 0.00 0.00 36.34 2.41
389 400 2.033372 TCCAGTTGGTCTTGTACGACA 58.967 47.619 0.00 0.00 35.63 4.35
462 473 1.298859 CGGGTCTTCCTTTTGGCTCG 61.299 60.000 0.00 0.00 40.12 5.03
467 478 3.067601 GGTCTTCCTTTTGGCTCGAAAAA 59.932 43.478 0.00 0.00 40.12 1.94
474 485 7.931578 TCCTTTTGGCTCGAAAAATATAGAA 57.068 32.000 0.00 0.00 40.12 2.10
505 516 8.671384 TGAAATTTAAATATACTCCAGTCCGG 57.329 34.615 0.01 0.00 0.00 5.14
507 518 8.672823 AAATTTAAATATACTCCAGTCCGGAC 57.327 34.615 27.67 27.67 39.64 4.79
508 519 5.443185 TTAAATATACTCCAGTCCGGACG 57.557 43.478 28.26 21.63 39.64 4.79
509 520 1.245732 ATATACTCCAGTCCGGACGC 58.754 55.000 28.26 6.44 39.64 5.19
513 524 1.079127 CTCCAGTCCGGACGCATTT 60.079 57.895 28.26 8.32 39.64 2.32
515 526 0.250553 TCCAGTCCGGACGCATTTTT 60.251 50.000 28.26 6.70 39.64 1.94
516 527 0.109781 CCAGTCCGGACGCATTTTTG 60.110 55.000 28.26 18.42 36.56 2.44
526 1307 4.551388 GGACGCATTTTTGGTTTCATACA 58.449 39.130 0.00 0.00 0.00 2.29
532 1313 5.354792 GCATTTTTGGTTTCATACATGGCAT 59.645 36.000 0.00 0.00 0.00 4.40
534 1315 7.227116 GCATTTTTGGTTTCATACATGGCATAT 59.773 33.333 0.00 0.00 0.00 1.78
665 1448 7.977789 ATTGAAAAACAGGTTCACAAAAGTT 57.022 28.000 0.00 0.00 34.78 2.66
666 1449 7.793927 TTGAAAAACAGGTTCACAAAAGTTT 57.206 28.000 0.00 0.00 34.78 2.66
670 1453 9.588774 GAAAAACAGGTTCACAAAAGTTTAAAC 57.411 29.630 10.47 10.47 0.00 2.01
806 1590 4.152647 TCAATCTATATCAGCAGACGGGT 58.847 43.478 0.00 0.00 0.00 5.28
836 1620 8.881743 TCAAAGGAAAATCAGTTGAAAAACATG 58.118 29.630 0.00 0.00 0.00 3.21
844 1628 5.901552 TCAGTTGAAAAACATGAGGGAAAC 58.098 37.500 0.00 0.00 0.00 2.78
1003 1793 1.168714 CAAAGCACCAACCCTAGCTC 58.831 55.000 0.00 0.00 36.07 4.09
1865 2694 2.092914 AGTAGCCTACTGCCATGAAACC 60.093 50.000 2.96 0.00 42.71 3.27
1871 2700 0.467844 ACTGCCATGAAACCACAGCA 60.468 50.000 0.00 0.00 31.46 4.41
1872 2701 0.892755 CTGCCATGAAACCACAGCAT 59.107 50.000 0.00 0.00 0.00 3.79
1873 2702 1.274167 CTGCCATGAAACCACAGCATT 59.726 47.619 0.00 0.00 0.00 3.56
1874 2703 1.693062 TGCCATGAAACCACAGCATTT 59.307 42.857 0.00 0.00 0.00 2.32
1875 2704 2.104451 TGCCATGAAACCACAGCATTTT 59.896 40.909 0.00 0.00 0.00 1.82
1908 2737 2.662866 GGCTAACCCCCTTTCCATTAC 58.337 52.381 0.00 0.00 0.00 1.89
1909 2738 2.243994 GGCTAACCCCCTTTCCATTACT 59.756 50.000 0.00 0.00 0.00 2.24
1910 2739 3.552875 GCTAACCCCCTTTCCATTACTC 58.447 50.000 0.00 0.00 0.00 2.59
1911 2740 3.053917 GCTAACCCCCTTTCCATTACTCA 60.054 47.826 0.00 0.00 0.00 3.41
1912 2741 4.569015 GCTAACCCCCTTTCCATTACTCAA 60.569 45.833 0.00 0.00 0.00 3.02
1913 2742 3.451402 ACCCCCTTTCCATTACTCAAC 57.549 47.619 0.00 0.00 0.00 3.18
1914 2743 2.719705 ACCCCCTTTCCATTACTCAACA 59.280 45.455 0.00 0.00 0.00 3.33
1915 2744 3.089284 CCCCCTTTCCATTACTCAACAC 58.911 50.000 0.00 0.00 0.00 3.32
1916 2745 3.499563 CCCCCTTTCCATTACTCAACACA 60.500 47.826 0.00 0.00 0.00 3.72
1917 2746 3.506067 CCCCTTTCCATTACTCAACACAC 59.494 47.826 0.00 0.00 0.00 3.82
1918 2747 4.398319 CCCTTTCCATTACTCAACACACT 58.602 43.478 0.00 0.00 0.00 3.55
1919 2748 5.514136 CCCCTTTCCATTACTCAACACACTA 60.514 44.000 0.00 0.00 0.00 2.74
1920 2749 5.411669 CCCTTTCCATTACTCAACACACTAC 59.588 44.000 0.00 0.00 0.00 2.73
1921 2750 6.231211 CCTTTCCATTACTCAACACACTACT 58.769 40.000 0.00 0.00 0.00 2.57
1922 2751 7.383687 CCTTTCCATTACTCAACACACTACTA 58.616 38.462 0.00 0.00 0.00 1.82
1923 2752 7.545965 CCTTTCCATTACTCAACACACTACTAG 59.454 40.741 0.00 0.00 0.00 2.57
1924 2753 6.525578 TCCATTACTCAACACACTACTAGG 57.474 41.667 0.00 0.00 0.00 3.02
1925 2754 6.250711 TCCATTACTCAACACACTACTAGGA 58.749 40.000 0.00 0.00 0.00 2.94
1926 2755 6.722590 TCCATTACTCAACACACTACTAGGAA 59.277 38.462 0.00 0.00 0.00 3.36
1927 2756 7.233962 TCCATTACTCAACACACTACTAGGAAA 59.766 37.037 0.00 0.00 0.00 3.13
1928 2757 7.331193 CCATTACTCAACACACTACTAGGAAAC 59.669 40.741 0.00 0.00 0.00 2.78
1929 2758 5.211174 ACTCAACACACTACTAGGAAACC 57.789 43.478 0.00 0.00 0.00 3.27
1930 2759 4.040095 ACTCAACACACTACTAGGAAACCC 59.960 45.833 0.00 0.00 0.00 4.11
1931 2760 3.968649 TCAACACACTACTAGGAAACCCA 59.031 43.478 0.00 0.00 0.00 4.51
1932 2761 4.062991 CAACACACTACTAGGAAACCCAC 58.937 47.826 0.00 0.00 0.00 4.61
1933 2762 2.636403 ACACACTACTAGGAAACCCACC 59.364 50.000 0.00 0.00 0.00 4.61
1934 2763 1.897802 ACACTACTAGGAAACCCACCG 59.102 52.381 0.00 0.00 0.00 4.94
1935 2764 0.900421 ACTACTAGGAAACCCACCGC 59.100 55.000 0.00 0.00 0.00 5.68
1936 2765 0.899720 CTACTAGGAAACCCACCGCA 59.100 55.000 0.00 0.00 0.00 5.69
1937 2766 0.609662 TACTAGGAAACCCACCGCAC 59.390 55.000 0.00 0.00 0.00 5.34
1938 2767 1.125711 ACTAGGAAACCCACCGCACT 61.126 55.000 0.00 0.00 0.00 4.40
1939 2768 0.391263 CTAGGAAACCCACCGCACTC 60.391 60.000 0.00 0.00 0.00 3.51
1940 2769 2.162338 TAGGAAACCCACCGCACTCG 62.162 60.000 0.00 0.00 0.00 4.18
1941 2770 3.723348 GAAACCCACCGCACTCGC 61.723 66.667 0.00 0.00 0.00 5.03
1966 2795 1.278238 GTCGAAACGAGTGCTATGGG 58.722 55.000 0.00 0.00 36.23 4.00
1967 2796 0.174845 TCGAAACGAGTGCTATGGGG 59.825 55.000 0.00 0.00 0.00 4.96
1968 2797 1.429148 CGAAACGAGTGCTATGGGGC 61.429 60.000 0.00 0.00 0.00 5.80
1969 2798 1.429148 GAAACGAGTGCTATGGGGCG 61.429 60.000 0.00 0.00 34.52 6.13
1970 2799 1.895020 AAACGAGTGCTATGGGGCGA 61.895 55.000 0.00 0.00 34.52 5.54
1971 2800 1.895020 AACGAGTGCTATGGGGCGAA 61.895 55.000 0.00 0.00 34.52 4.70
1972 2801 1.153449 CGAGTGCTATGGGGCGAAA 60.153 57.895 0.00 0.00 34.52 3.46
1973 2802 0.742990 CGAGTGCTATGGGGCGAAAA 60.743 55.000 0.00 0.00 34.52 2.29
1974 2803 0.733150 GAGTGCTATGGGGCGAAAAC 59.267 55.000 0.00 0.00 34.52 2.43
1975 2804 0.679960 AGTGCTATGGGGCGAAAACC 60.680 55.000 0.00 0.00 34.52 3.27
1976 2805 0.679960 GTGCTATGGGGCGAAAACCT 60.680 55.000 0.00 0.00 34.52 3.50
1977 2806 0.913205 TGCTATGGGGCGAAAACCTA 59.087 50.000 0.00 0.00 34.52 3.08
1978 2807 1.134220 TGCTATGGGGCGAAAACCTAG 60.134 52.381 0.00 0.00 34.52 3.02
1979 2808 1.134189 GCTATGGGGCGAAAACCTAGT 60.134 52.381 0.00 0.00 0.00 2.57
1980 2809 2.103601 GCTATGGGGCGAAAACCTAGTA 59.896 50.000 0.00 0.00 0.00 1.82
1981 2810 3.802675 GCTATGGGGCGAAAACCTAGTAG 60.803 52.174 0.00 0.00 0.00 2.57
1982 2811 0.251073 TGGGGCGAAAACCTAGTAGC 59.749 55.000 0.00 0.00 0.00 3.58
1983 2812 0.251073 GGGGCGAAAACCTAGTAGCA 59.749 55.000 0.00 0.00 0.00 3.49
1984 2813 1.366679 GGGCGAAAACCTAGTAGCAC 58.633 55.000 0.00 0.00 0.00 4.40
1985 2814 1.366679 GGCGAAAACCTAGTAGCACC 58.633 55.000 0.00 0.00 0.00 5.01
1986 2815 1.338389 GGCGAAAACCTAGTAGCACCA 60.338 52.381 0.00 0.00 0.00 4.17
1987 2816 2.000447 GCGAAAACCTAGTAGCACCAG 59.000 52.381 0.00 0.00 0.00 4.00
1988 2817 2.612221 GCGAAAACCTAGTAGCACCAGT 60.612 50.000 0.00 0.00 0.00 4.00
1989 2818 3.367703 GCGAAAACCTAGTAGCACCAGTA 60.368 47.826 0.00 0.00 0.00 2.74
1990 2819 4.421948 CGAAAACCTAGTAGCACCAGTAG 58.578 47.826 0.00 0.00 0.00 2.57
1991 2820 4.157289 CGAAAACCTAGTAGCACCAGTAGA 59.843 45.833 0.00 0.00 0.00 2.59
1992 2821 5.402997 AAAACCTAGTAGCACCAGTAGAC 57.597 43.478 0.00 0.00 0.00 2.59
1993 2822 4.319037 AACCTAGTAGCACCAGTAGACT 57.681 45.455 0.00 0.00 0.00 3.24
1994 2823 5.447778 AACCTAGTAGCACCAGTAGACTA 57.552 43.478 0.00 0.00 0.00 2.59
1995 2824 5.038651 ACCTAGTAGCACCAGTAGACTAG 57.961 47.826 0.00 0.00 39.44 2.57
1996 2825 4.720773 ACCTAGTAGCACCAGTAGACTAGA 59.279 45.833 8.57 0.00 41.32 2.43
1997 2826 5.058490 CCTAGTAGCACCAGTAGACTAGAC 58.942 50.000 8.57 0.00 41.32 2.59
1998 2827 3.888583 AGTAGCACCAGTAGACTAGACC 58.111 50.000 0.00 0.00 0.00 3.85
1999 2828 3.524380 AGTAGCACCAGTAGACTAGACCT 59.476 47.826 0.00 0.00 0.00 3.85
2000 2829 4.720773 AGTAGCACCAGTAGACTAGACCTA 59.279 45.833 0.00 0.00 0.00 3.08
2001 2830 4.799715 AGCACCAGTAGACTAGACCTAT 57.200 45.455 0.00 0.00 0.00 2.57
2002 2831 5.132043 AGCACCAGTAGACTAGACCTATT 57.868 43.478 0.00 0.00 0.00 1.73
2003 2832 6.263412 AGCACCAGTAGACTAGACCTATTA 57.737 41.667 0.00 0.00 0.00 0.98
2004 2833 6.063404 AGCACCAGTAGACTAGACCTATTAC 58.937 44.000 0.00 0.00 0.00 1.89
2005 2834 5.826737 GCACCAGTAGACTAGACCTATTACA 59.173 44.000 0.00 0.00 0.00 2.41
2006 2835 6.320672 GCACCAGTAGACTAGACCTATTACAA 59.679 42.308 0.00 0.00 0.00 2.41
2007 2836 7.147949 GCACCAGTAGACTAGACCTATTACAAA 60.148 40.741 0.00 0.00 0.00 2.83
2008 2837 8.746530 CACCAGTAGACTAGACCTATTACAAAA 58.253 37.037 0.00 0.00 0.00 2.44
2009 2838 8.968969 ACCAGTAGACTAGACCTATTACAAAAG 58.031 37.037 0.00 0.00 0.00 2.27
2010 2839 9.186837 CCAGTAGACTAGACCTATTACAAAAGA 57.813 37.037 0.00 0.00 0.00 2.52
2015 2844 8.862085 AGACTAGACCTATTACAAAAGATAGCC 58.138 37.037 0.00 0.00 0.00 3.93
2016 2845 8.548880 ACTAGACCTATTACAAAAGATAGCCA 57.451 34.615 0.00 0.00 0.00 4.75
2017 2846 8.422566 ACTAGACCTATTACAAAAGATAGCCAC 58.577 37.037 0.00 0.00 0.00 5.01
2018 2847 7.195374 AGACCTATTACAAAAGATAGCCACA 57.805 36.000 0.00 0.00 0.00 4.17
2019 2848 7.806180 AGACCTATTACAAAAGATAGCCACAT 58.194 34.615 0.00 0.00 0.00 3.21
2020 2849 8.934697 AGACCTATTACAAAAGATAGCCACATA 58.065 33.333 0.00 0.00 0.00 2.29
2021 2850 9.555727 GACCTATTACAAAAGATAGCCACATAA 57.444 33.333 0.00 0.00 0.00 1.90
2022 2851 9.338622 ACCTATTACAAAAGATAGCCACATAAC 57.661 33.333 0.00 0.00 0.00 1.89
2023 2852 8.784043 CCTATTACAAAAGATAGCCACATAACC 58.216 37.037 0.00 0.00 0.00 2.85
2024 2853 9.337396 CTATTACAAAAGATAGCCACATAACCA 57.663 33.333 0.00 0.00 0.00 3.67
2025 2854 5.897377 ACAAAAGATAGCCACATAACCAC 57.103 39.130 0.00 0.00 0.00 4.16
2026 2855 5.321102 ACAAAAGATAGCCACATAACCACA 58.679 37.500 0.00 0.00 0.00 4.17
2027 2856 5.772672 ACAAAAGATAGCCACATAACCACAA 59.227 36.000 0.00 0.00 0.00 3.33
2028 2857 6.071952 ACAAAAGATAGCCACATAACCACAAG 60.072 38.462 0.00 0.00 0.00 3.16
2029 2858 4.844349 AGATAGCCACATAACCACAAGT 57.156 40.909 0.00 0.00 0.00 3.16
2030 2859 5.950544 AGATAGCCACATAACCACAAGTA 57.049 39.130 0.00 0.00 0.00 2.24
2031 2860 6.500589 AGATAGCCACATAACCACAAGTAT 57.499 37.500 0.00 0.00 0.00 2.12
2032 2861 6.525629 AGATAGCCACATAACCACAAGTATC 58.474 40.000 0.00 0.00 0.00 2.24
2033 2862 4.844349 AGCCACATAACCACAAGTATCT 57.156 40.909 0.00 0.00 0.00 1.98
2034 2863 4.517285 AGCCACATAACCACAAGTATCTG 58.483 43.478 0.00 0.00 0.00 2.90
2035 2864 3.627577 GCCACATAACCACAAGTATCTGG 59.372 47.826 0.00 0.00 0.00 3.86
2036 2865 4.199310 CCACATAACCACAAGTATCTGGG 58.801 47.826 0.00 0.00 0.00 4.45
2037 2866 4.080582 CCACATAACCACAAGTATCTGGGA 60.081 45.833 0.00 0.00 0.00 4.37
2038 2867 5.496556 CACATAACCACAAGTATCTGGGAA 58.503 41.667 0.00 0.00 0.00 3.97
2039 2868 5.354234 CACATAACCACAAGTATCTGGGAAC 59.646 44.000 0.00 0.00 0.00 3.62
2051 2880 2.582978 GGGAACCGTAGCCCACTC 59.417 66.667 4.82 0.00 44.07 3.51
2052 2881 2.288025 GGGAACCGTAGCCCACTCA 61.288 63.158 4.82 0.00 44.07 3.41
2053 2882 1.218316 GGAACCGTAGCCCACTCAG 59.782 63.158 0.00 0.00 0.00 3.35
2054 2883 1.542187 GGAACCGTAGCCCACTCAGT 61.542 60.000 0.00 0.00 0.00 3.41
2055 2884 1.180029 GAACCGTAGCCCACTCAGTA 58.820 55.000 0.00 0.00 0.00 2.74
2056 2885 1.134560 GAACCGTAGCCCACTCAGTAG 59.865 57.143 0.00 0.00 0.00 2.57
2057 2886 0.683504 ACCGTAGCCCACTCAGTAGG 60.684 60.000 0.00 0.00 0.00 3.18
2061 2890 4.865865 GCCCACTCAGTAGGCATC 57.134 61.111 9.73 0.00 46.34 3.91
2062 2891 1.147153 GCCCACTCAGTAGGCATCC 59.853 63.158 9.73 0.00 46.34 3.51
2063 2892 1.341156 GCCCACTCAGTAGGCATCCT 61.341 60.000 9.73 0.00 46.34 3.24
2064 2893 0.755686 CCCACTCAGTAGGCATCCTC 59.244 60.000 0.00 0.00 34.61 3.71
2065 2894 1.690845 CCCACTCAGTAGGCATCCTCT 60.691 57.143 0.00 0.00 34.61 3.69
2066 2895 1.411977 CCACTCAGTAGGCATCCTCTG 59.588 57.143 0.00 0.00 34.61 3.35
2067 2896 2.106566 CACTCAGTAGGCATCCTCTGT 58.893 52.381 10.11 0.00 34.61 3.41
2068 2897 2.100584 CACTCAGTAGGCATCCTCTGTC 59.899 54.545 10.11 0.00 34.61 3.51
2069 2898 1.336440 CTCAGTAGGCATCCTCTGTCG 59.664 57.143 10.11 0.00 34.61 4.35
2070 2899 0.387202 CAGTAGGCATCCTCTGTCGG 59.613 60.000 0.00 0.00 34.61 4.79
2071 2900 0.259065 AGTAGGCATCCTCTGTCGGA 59.741 55.000 0.00 0.00 34.61 4.55
2072 2901 0.386113 GTAGGCATCCTCTGTCGGAC 59.614 60.000 0.00 0.00 35.52 4.79
2073 2902 0.033503 TAGGCATCCTCTGTCGGACA 60.034 55.000 10.88 10.88 35.52 4.02
2075 2904 1.142748 GCATCCTCTGTCGGACAGG 59.857 63.158 31.61 22.94 45.94 4.00
2076 2905 1.142748 CATCCTCTGTCGGACAGGC 59.857 63.158 31.61 0.00 45.94 4.85
2077 2906 1.305297 ATCCTCTGTCGGACAGGCA 60.305 57.895 31.61 18.86 45.94 4.75
2078 2907 0.904865 ATCCTCTGTCGGACAGGCAA 60.905 55.000 31.61 19.63 45.94 4.52
2079 2908 1.118965 TCCTCTGTCGGACAGGCAAA 61.119 55.000 31.61 15.72 45.94 3.68
2080 2909 0.250295 CCTCTGTCGGACAGGCAAAA 60.250 55.000 31.61 15.39 45.94 2.44
2081 2910 1.151668 CTCTGTCGGACAGGCAAAAG 58.848 55.000 31.61 20.03 45.94 2.27
2082 2911 0.756294 TCTGTCGGACAGGCAAAAGA 59.244 50.000 31.61 12.99 45.94 2.52
2083 2912 1.140052 TCTGTCGGACAGGCAAAAGAA 59.860 47.619 31.61 12.11 45.94 2.52
2084 2913 1.946768 CTGTCGGACAGGCAAAAGAAA 59.053 47.619 26.72 0.00 42.35 2.52
2085 2914 1.673920 TGTCGGACAGGCAAAAGAAAC 59.326 47.619 6.76 0.00 0.00 2.78
2086 2915 1.673920 GTCGGACAGGCAAAAGAAACA 59.326 47.619 2.62 0.00 0.00 2.83
2087 2916 1.946768 TCGGACAGGCAAAAGAAACAG 59.053 47.619 0.00 0.00 0.00 3.16
2088 2917 1.600413 CGGACAGGCAAAAGAAACAGC 60.600 52.381 0.00 0.00 0.00 4.40
2089 2918 1.408702 GGACAGGCAAAAGAAACAGCA 59.591 47.619 0.00 0.00 0.00 4.41
2090 2919 2.159114 GGACAGGCAAAAGAAACAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
2091 2920 3.520569 GACAGGCAAAAGAAACAGCAAA 58.479 40.909 0.00 0.00 0.00 3.68
2092 2921 3.932089 GACAGGCAAAAGAAACAGCAAAA 59.068 39.130 0.00 0.00 0.00 2.44
2093 2922 4.516323 ACAGGCAAAAGAAACAGCAAAAT 58.484 34.783 0.00 0.00 0.00 1.82
2094 2923 5.669477 ACAGGCAAAAGAAACAGCAAAATA 58.331 33.333 0.00 0.00 0.00 1.40
2095 2924 6.290605 ACAGGCAAAAGAAACAGCAAAATAT 58.709 32.000 0.00 0.00 0.00 1.28
2096 2925 6.203338 ACAGGCAAAAGAAACAGCAAAATATG 59.797 34.615 0.00 0.00 0.00 1.78
2097 2926 5.702209 AGGCAAAAGAAACAGCAAAATATGG 59.298 36.000 0.00 0.00 0.00 2.74
2098 2927 5.106594 GGCAAAAGAAACAGCAAAATATGGG 60.107 40.000 0.00 0.00 0.00 4.00
2099 2928 5.617529 GCAAAAGAAACAGCAAAATATGGGC 60.618 40.000 0.00 0.00 0.00 5.36
2100 2929 3.508744 AGAAACAGCAAAATATGGGCG 57.491 42.857 0.00 0.00 0.00 6.13
2101 2930 1.926510 GAAACAGCAAAATATGGGCGC 59.073 47.619 0.00 0.00 0.00 6.53
2102 2931 1.185315 AACAGCAAAATATGGGCGCT 58.815 45.000 7.64 0.00 0.00 5.92
2103 2932 3.261441 CAGCAAAATATGGGCGCTG 57.739 52.632 7.64 0.00 43.55 5.18
2104 2933 0.249155 CAGCAAAATATGGGCGCTGG 60.249 55.000 7.64 0.00 44.94 4.85
2105 2934 1.067916 GCAAAATATGGGCGCTGGG 59.932 57.895 7.64 0.00 0.00 4.45
2106 2935 1.391157 GCAAAATATGGGCGCTGGGA 61.391 55.000 7.64 0.00 0.00 4.37
2107 2936 0.670162 CAAAATATGGGCGCTGGGAG 59.330 55.000 7.64 0.00 0.00 4.30
2108 2937 0.550914 AAAATATGGGCGCTGGGAGA 59.449 50.000 7.64 0.00 0.00 3.71
2109 2938 0.109342 AAATATGGGCGCTGGGAGAG 59.891 55.000 7.64 0.00 0.00 3.20
2110 2939 0.764369 AATATGGGCGCTGGGAGAGA 60.764 55.000 7.64 0.00 0.00 3.10
2111 2940 0.546267 ATATGGGCGCTGGGAGAGAT 60.546 55.000 7.64 0.00 0.00 2.75
2112 2941 1.188219 TATGGGCGCTGGGAGAGATC 61.188 60.000 7.64 0.00 0.00 2.75
2113 2942 2.841988 GGGCGCTGGGAGAGATCT 60.842 66.667 7.64 0.00 0.00 2.75
2114 2943 2.420890 GGCGCTGGGAGAGATCTG 59.579 66.667 7.64 0.00 0.00 2.90
2115 2944 2.280052 GCGCTGGGAGAGATCTGC 60.280 66.667 0.00 0.00 0.00 4.26
2116 2945 2.795110 GCGCTGGGAGAGATCTGCT 61.795 63.158 0.00 0.00 34.50 4.24
2117 2946 1.821936 CGCTGGGAGAGATCTGCTT 59.178 57.895 0.00 0.00 34.50 3.91
2118 2947 0.249405 CGCTGGGAGAGATCTGCTTC 60.249 60.000 0.00 0.00 34.50 3.86
2119 2948 1.122227 GCTGGGAGAGATCTGCTTCT 58.878 55.000 0.00 0.00 34.50 2.85
2120 2949 2.315176 GCTGGGAGAGATCTGCTTCTA 58.685 52.381 0.00 0.00 34.50 2.10
2121 2950 2.297033 GCTGGGAGAGATCTGCTTCTAG 59.703 54.545 0.00 4.82 34.50 2.43
2122 2951 3.565307 CTGGGAGAGATCTGCTTCTAGT 58.435 50.000 0.00 0.00 34.50 2.57
2129 2958 5.901552 AGAGATCTGCTTCTAGTTTACTGC 58.098 41.667 0.00 0.00 0.00 4.40
2228 3062 6.183361 ACGGAGACCTATTTTATCTTGATGCT 60.183 38.462 0.00 0.00 0.00 3.79
2252 3086 2.420628 TGCATTTTCAAACCGCAGAG 57.579 45.000 0.00 0.00 0.00 3.35
2372 3212 3.118542 GCTGGCTTTCTGAGTGTTTTTG 58.881 45.455 0.00 0.00 0.00 2.44
2391 3232 7.389053 TGTTTTTGTTGGAAGTGTATTTGCTTT 59.611 29.630 0.00 0.00 0.00 3.51
2562 3404 4.325028 TGACAGACGGTTAGCAACTTTA 57.675 40.909 0.00 0.00 0.00 1.85
2637 3479 1.372501 TTTAGAGCTTTCCCTGGGCT 58.627 50.000 8.22 0.48 39.16 5.19
2647 3508 1.078143 CCCTGGGCTGAGTACAAGC 60.078 63.158 0.00 11.14 0.00 4.01
2737 3599 7.765307 TCAAATCTCCAATGCTCTTTTCATAC 58.235 34.615 0.00 0.00 0.00 2.39
2775 3637 3.609103 ACGAGTCTTTGTTGTCAATGC 57.391 42.857 0.00 0.00 33.32 3.56
2864 3740 9.746457 AGATTAGTAATCTTTTCAAGCTTTCCT 57.254 29.630 18.01 0.00 45.75 3.36
3472 4451 2.084546 GCTAGCGGTGGAAAGTTTGAT 58.915 47.619 0.71 0.00 0.00 2.57
3487 4466 5.869649 AGTTTGATAAAAAGTTGCCTGGT 57.130 34.783 0.00 0.00 0.00 4.00
3714 4697 1.542547 GCCAAGAACTTCGAGGAACCA 60.543 52.381 0.00 0.00 0.00 3.67
3798 4783 4.393062 CCACCATCTAACAAGTGCTGTAAG 59.607 45.833 0.00 0.00 37.23 2.34
3870 4858 3.328931 AGAGGAGGAAAGACAAGCAATCA 59.671 43.478 0.00 0.00 0.00 2.57
3871 4859 4.018597 AGAGGAGGAAAGACAAGCAATCAT 60.019 41.667 0.00 0.00 0.00 2.45
3872 4860 4.268359 AGGAGGAAAGACAAGCAATCATC 58.732 43.478 0.00 0.00 0.00 2.92
3948 4936 4.213482 TCTTCAAAGAAAAGCGCTTAGGTC 59.787 41.667 25.33 19.99 30.73 3.85
3949 4937 2.812011 TCAAAGAAAAGCGCTTAGGTCC 59.188 45.455 25.33 10.71 0.00 4.46
3950 4938 2.814336 CAAAGAAAAGCGCTTAGGTCCT 59.186 45.455 25.33 12.80 0.00 3.85
4014 5003 2.683152 GCAGTCTCCAAGCATCAAGGAT 60.683 50.000 0.00 0.00 0.00 3.24
4071 5060 8.165267 TGTTTAAGTCCCAAGGGAGAAATATA 57.835 34.615 8.41 0.00 46.16 0.86
4086 5075 7.821359 GGGAGAAATATAGTTATTCCGGTTACC 59.179 40.741 0.00 0.00 0.00 2.85
4102 5091 4.994852 CGGTTACCACTGGTTATGATATGG 59.005 45.833 5.90 0.00 37.09 2.74
4146 5143 5.977129 TGATGACATAGCTGTACACGTATTG 59.023 40.000 0.00 0.00 35.14 1.90
4252 5251 5.945784 TCTGAGCACAAGCCATAATTTAGTT 59.054 36.000 0.00 0.00 43.56 2.24
4300 5299 0.246360 GCCAACCCCATGCTTAACAC 59.754 55.000 0.00 0.00 0.00 3.32
4301 5300 1.626686 CCAACCCCATGCTTAACACA 58.373 50.000 0.00 0.00 0.00 3.72
4302 5301 1.272212 CCAACCCCATGCTTAACACAC 59.728 52.381 0.00 0.00 0.00 3.82
4303 5302 1.959985 CAACCCCATGCTTAACACACA 59.040 47.619 0.00 0.00 0.00 3.72
4304 5303 2.363680 CAACCCCATGCTTAACACACAA 59.636 45.455 0.00 0.00 0.00 3.33
4305 5304 1.960689 ACCCCATGCTTAACACACAAC 59.039 47.619 0.00 0.00 0.00 3.32
4306 5305 1.068610 CCCCATGCTTAACACACAACG 60.069 52.381 0.00 0.00 0.00 4.10
4307 5306 1.665735 CCCATGCTTAACACACAACGC 60.666 52.381 0.00 0.00 0.00 4.84
4308 5307 1.266718 CCATGCTTAACACACAACGCT 59.733 47.619 0.00 0.00 0.00 5.07
4309 5308 2.482336 CCATGCTTAACACACAACGCTA 59.518 45.455 0.00 0.00 0.00 4.26
4310 5309 3.126858 CCATGCTTAACACACAACGCTAT 59.873 43.478 0.00 0.00 0.00 2.97
4311 5310 4.331443 CCATGCTTAACACACAACGCTATA 59.669 41.667 0.00 0.00 0.00 1.31
4312 5311 5.007626 CCATGCTTAACACACAACGCTATAT 59.992 40.000 0.00 0.00 0.00 0.86
4313 5312 5.712217 TGCTTAACACACAACGCTATATC 57.288 39.130 0.00 0.00 0.00 1.63
4314 5313 5.416083 TGCTTAACACACAACGCTATATCT 58.584 37.500 0.00 0.00 0.00 1.98
4315 5314 5.518847 TGCTTAACACACAACGCTATATCTC 59.481 40.000 0.00 0.00 0.00 2.75
4316 5315 5.749109 GCTTAACACACAACGCTATATCTCT 59.251 40.000 0.00 0.00 0.00 3.10
4317 5316 6.074782 GCTTAACACACAACGCTATATCTCTC 60.075 42.308 0.00 0.00 0.00 3.20
4318 5317 5.584253 AACACACAACGCTATATCTCTCT 57.416 39.130 0.00 0.00 0.00 3.10
4319 5318 4.926244 ACACACAACGCTATATCTCTCTG 58.074 43.478 0.00 0.00 0.00 3.35
4320 5319 4.202060 ACACACAACGCTATATCTCTCTGG 60.202 45.833 0.00 0.00 0.00 3.86
4338 5337 2.698797 CTGGTGACCGTGAACCCTATAT 59.301 50.000 0.00 0.00 35.44 0.86
4339 5338 3.893200 CTGGTGACCGTGAACCCTATATA 59.107 47.826 0.00 0.00 35.44 0.86
4349 5348 7.665559 ACCGTGAACCCTATATACGAATAGTAA 59.334 37.037 0.00 0.00 39.04 2.24
4491 5491 7.492669 ACCGAGTCTCAACAGATGTTATATTTG 59.507 37.037 0.00 0.00 36.32 2.32
4494 5494 9.371136 GAGTCTCAACAGATGTTATATTTGTGA 57.629 33.333 0.00 0.00 36.32 3.58
4495 5495 9.376075 AGTCTCAACAGATGTTATATTTGTGAG 57.624 33.333 0.00 0.00 36.32 3.51
4496 5496 9.371136 GTCTCAACAGATGTTATATTTGTGAGA 57.629 33.333 0.00 2.28 36.32 3.27
4564 5564 9.449719 TCTTTCTTTTTATATGTTCTCTCCCAC 57.550 33.333 0.00 0.00 0.00 4.61
4565 5565 8.575649 TTTCTTTTTATATGTTCTCTCCCACC 57.424 34.615 0.00 0.00 0.00 4.61
4584 5584 1.265635 CCTCTCAGAGATCTAACCGCG 59.734 57.143 2.09 0.00 0.00 6.46
4671 5671 7.552330 TGCTGCTACTAATCATTCATTACAACA 59.448 33.333 0.00 0.00 0.00 3.33
4743 5744 6.620877 TCACCTAACACCAATTCATCTAGT 57.379 37.500 0.00 0.00 0.00 2.57
4753 5754 6.878923 CACCAATTCATCTAGTACCACTTCAA 59.121 38.462 0.00 0.00 0.00 2.69
4789 5810 2.121291 ACACACACAACACCATCACA 57.879 45.000 0.00 0.00 0.00 3.58
4790 5811 1.742831 ACACACACAACACCATCACAC 59.257 47.619 0.00 0.00 0.00 3.82
4791 5812 2.016318 CACACACAACACCATCACACT 58.984 47.619 0.00 0.00 0.00 3.55
4792 5813 2.423185 CACACACAACACCATCACACTT 59.577 45.455 0.00 0.00 0.00 3.16
4793 5814 3.625313 CACACACAACACCATCACACTTA 59.375 43.478 0.00 0.00 0.00 2.24
4794 5815 3.625764 ACACACAACACCATCACACTTAC 59.374 43.478 0.00 0.00 0.00 2.34
4797 5818 3.820467 CACAACACCATCACACTTACCAT 59.180 43.478 0.00 0.00 0.00 3.55
4800 5821 3.674997 ACACCATCACACTTACCATCAC 58.325 45.455 0.00 0.00 0.00 3.06
4801 5822 3.009723 CACCATCACACTTACCATCACC 58.990 50.000 0.00 0.00 0.00 4.02
4802 5823 2.642311 ACCATCACACTTACCATCACCA 59.358 45.455 0.00 0.00 0.00 4.17
4803 5824 3.273434 CCATCACACTTACCATCACCAG 58.727 50.000 0.00 0.00 0.00 4.00
4887 5908 4.225042 TCCTCTCACTATAGCTGCCAAAAA 59.775 41.667 0.00 0.00 0.00 1.94
4897 5918 1.796617 GCTGCCAAAAATAGCTCTGCG 60.797 52.381 0.00 0.00 34.70 5.18
4908 5929 2.667536 CTCTGCGTGCAGTGCCTT 60.668 61.111 20.33 0.00 43.96 4.35
4919 5940 2.091541 GCAGTGCCTTTACCTGCAATA 58.908 47.619 2.85 0.00 39.57 1.90
4924 5945 2.576191 TGCCTTTACCTGCAATACCTCT 59.424 45.455 0.00 0.00 33.87 3.69
4926 5947 4.127907 GCCTTTACCTGCAATACCTCTAC 58.872 47.826 0.00 0.00 0.00 2.59
4927 5948 4.141688 GCCTTTACCTGCAATACCTCTACT 60.142 45.833 0.00 0.00 0.00 2.57
4983 6007 3.334583 TGTCCTCTGTTGCACCTATTC 57.665 47.619 0.00 0.00 0.00 1.75
4989 6013 1.942657 CTGTTGCACCTATTCCATCCG 59.057 52.381 0.00 0.00 0.00 4.18
4992 6016 0.254462 TGCACCTATTCCATCCGCAA 59.746 50.000 0.00 0.00 0.00 4.85
4995 6019 2.364632 CACCTATTCCATCCGCAACAA 58.635 47.619 0.00 0.00 0.00 2.83
5000 6024 0.801872 TTCCATCCGCAACAACATCG 59.198 50.000 0.00 0.00 0.00 3.84
5001 6025 0.321210 TCCATCCGCAACAACATCGT 60.321 50.000 0.00 0.00 0.00 3.73
5016 6040 2.158667 ACATCGTCAACAAGGACCCTTT 60.159 45.455 0.00 0.00 34.24 3.11
5043 6067 5.395657 CCAAACAGATGCTCCACATACTCTA 60.396 44.000 0.00 0.00 39.84 2.43
5044 6068 5.528043 AACAGATGCTCCACATACTCTAG 57.472 43.478 0.00 0.00 39.84 2.43
5045 6069 3.320541 ACAGATGCTCCACATACTCTAGC 59.679 47.826 0.00 0.00 39.84 3.42
5046 6070 3.573538 CAGATGCTCCACATACTCTAGCT 59.426 47.826 0.00 0.00 39.84 3.32
5053 6077 4.809193 TCCACATACTCTAGCTCTTCCAT 58.191 43.478 0.00 0.00 0.00 3.41
5059 6083 1.617850 CTCTAGCTCTTCCATCGCCAT 59.382 52.381 0.00 0.00 0.00 4.40
5062 6086 2.540265 AGCTCTTCCATCGCCATAAG 57.460 50.000 0.00 0.00 0.00 1.73
5065 6089 2.398498 CTCTTCCATCGCCATAAGTCG 58.602 52.381 0.00 0.00 0.00 4.18
5166 6857 9.515226 TTTAACTTATGGAGCAACATTACTTCT 57.485 29.630 0.00 0.00 32.39 2.85
5167 6858 6.992063 ACTTATGGAGCAACATTACTTCTG 57.008 37.500 0.00 0.00 32.39 3.02
5168 6859 5.882557 ACTTATGGAGCAACATTACTTCTGG 59.117 40.000 0.00 0.00 32.39 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.375098 CCTCACGAGGTAGGTCGGTC 61.375 65.000 4.83 0.00 44.53 4.79
1 2 1.378250 CCTCACGAGGTAGGTCGGT 60.378 63.158 4.83 0.00 44.53 4.69
14 15 0.391793 GCTGTAGAGTTGGCCCTCAC 60.392 60.000 11.13 7.81 33.75 3.51
32 33 0.523072 ATGCCACGTCTTTGACATGC 59.477 50.000 0.00 0.00 32.09 4.06
34 35 3.334583 ACTATGCCACGTCTTTGACAT 57.665 42.857 0.00 0.00 32.09 3.06
35 36 2.831685 ACTATGCCACGTCTTTGACA 57.168 45.000 0.00 0.00 32.09 3.58
36 37 3.846360 ACTACTATGCCACGTCTTTGAC 58.154 45.455 0.00 0.00 0.00 3.18
39 40 2.829720 TGGACTACTATGCCACGTCTTT 59.170 45.455 0.00 0.00 0.00 2.52
69 70 7.760340 GAATCCACGATTAAGGATACTATCACC 59.240 40.741 0.00 0.00 43.67 4.02
78 79 5.523916 CGTCTTTGAATCCACGATTAAGGAT 59.476 40.000 0.00 0.00 46.33 3.24
79 80 4.868171 CGTCTTTGAATCCACGATTAAGGA 59.132 41.667 0.00 0.00 38.50 3.36
80 81 4.868171 TCGTCTTTGAATCCACGATTAAGG 59.132 41.667 0.00 0.00 36.39 2.69
81 82 5.005779 CCTCGTCTTTGAATCCACGATTAAG 59.994 44.000 0.00 0.00 40.31 1.85
82 83 4.868171 CCTCGTCTTTGAATCCACGATTAA 59.132 41.667 0.00 0.00 40.31 1.40
83 84 4.081862 ACCTCGTCTTTGAATCCACGATTA 60.082 41.667 0.00 0.00 40.31 1.75
84 85 3.262420 CCTCGTCTTTGAATCCACGATT 58.738 45.455 0.00 0.00 40.31 3.34
85 86 2.233922 ACCTCGTCTTTGAATCCACGAT 59.766 45.455 0.00 0.00 40.31 3.73
86 87 1.616865 ACCTCGTCTTTGAATCCACGA 59.383 47.619 0.00 0.00 38.89 4.35
90 101 1.468914 GGCAACCTCGTCTTTGAATCC 59.531 52.381 0.00 0.00 0.00 3.01
93 104 1.140052 TCTGGCAACCTCGTCTTTGAA 59.860 47.619 0.00 0.00 0.00 2.69
99 110 1.444553 CGACTCTGGCAACCTCGTC 60.445 63.158 0.00 0.00 0.00 4.20
120 131 0.744281 TGCCTCGCTATGTCATCGAA 59.256 50.000 0.00 0.00 0.00 3.71
125 136 1.519234 CGCTTGCCTCGCTATGTCA 60.519 57.895 0.00 0.00 0.00 3.58
126 137 1.483424 GACGCTTGCCTCGCTATGTC 61.483 60.000 0.00 0.00 0.00 3.06
131 142 3.807631 TTGTGACGCTTGCCTCGCT 62.808 57.895 6.69 0.00 0.00 4.93
141 152 2.412089 GGATGTACTCTGTTTGTGACGC 59.588 50.000 0.00 0.00 0.00 5.19
146 157 3.306088 CGACCAGGATGTACTCTGTTTGT 60.306 47.826 0.00 0.00 0.00 2.83
148 159 2.233922 CCGACCAGGATGTACTCTGTTT 59.766 50.000 0.00 0.00 45.00 2.83
151 162 0.747255 CCCGACCAGGATGTACTCTG 59.253 60.000 0.00 0.00 45.00 3.35
166 177 3.596310 TTACACAATTGTCGATCCCGA 57.404 42.857 8.48 0.00 43.35 5.14
170 181 6.961554 GGAGTCAAATTACACAATTGTCGATC 59.038 38.462 8.48 0.00 37.15 3.69
204 215 7.364149 TCTTAGGCCGAATAAAGGTAACATA 57.636 36.000 0.00 0.00 41.41 2.29
205 216 6.243216 TCTTAGGCCGAATAAAGGTAACAT 57.757 37.500 0.00 0.00 41.41 2.71
206 217 5.680594 TCTTAGGCCGAATAAAGGTAACA 57.319 39.130 0.00 0.00 41.41 2.41
209 220 4.101898 TGCATCTTAGGCCGAATAAAGGTA 59.898 41.667 0.00 0.00 0.00 3.08
210 221 3.118038 TGCATCTTAGGCCGAATAAAGGT 60.118 43.478 0.00 0.00 0.00 3.50
211 222 3.476552 TGCATCTTAGGCCGAATAAAGG 58.523 45.455 0.00 0.00 0.00 3.11
212 223 5.163663 TGTTTGCATCTTAGGCCGAATAAAG 60.164 40.000 0.00 0.00 0.00 1.85
214 225 4.265893 TGTTTGCATCTTAGGCCGAATAA 58.734 39.130 0.00 0.00 0.00 1.40
219 230 0.734889 CCTGTTTGCATCTTAGGCCG 59.265 55.000 0.00 0.00 0.00 6.13
221 232 4.010349 ACTAACCTGTTTGCATCTTAGGC 58.990 43.478 6.70 0.00 31.69 3.93
293 304 1.470098 GTGGTGAGTGCAAGGCTATTG 59.530 52.381 0.00 0.00 0.00 1.90
307 318 0.178301 TTGTGTGTAAGCCGTGGTGA 59.822 50.000 0.00 0.00 0.00 4.02
381 392 3.818210 ACCAAAAGCATGATTGTCGTACA 59.182 39.130 0.00 0.00 0.00 2.90
384 395 2.884012 TGACCAAAAGCATGATTGTCGT 59.116 40.909 0.00 0.00 0.00 4.34
425 436 5.421056 AGACCCGACATAGAATAAGTGTCAA 59.579 40.000 5.70 0.00 41.69 3.18
434 445 5.186198 CAAAAGGAAGACCCGACATAGAAT 58.814 41.667 0.00 0.00 40.87 2.40
442 453 0.036306 GAGCCAAAAGGAAGACCCGA 59.964 55.000 0.00 0.00 40.87 5.14
444 455 0.036306 TCGAGCCAAAAGGAAGACCC 59.964 55.000 0.00 0.00 36.73 4.46
497 508 0.109781 CAAAAATGCGTCCGGACTGG 60.110 55.000 30.92 18.21 40.09 4.00
498 509 0.109781 CCAAAAATGCGTCCGGACTG 60.110 55.000 30.92 23.99 0.00 3.51
500 511 0.312729 AACCAAAAATGCGTCCGGAC 59.687 50.000 25.28 25.28 0.00 4.79
502 513 1.269309 TGAAACCAAAAATGCGTCCGG 60.269 47.619 0.00 0.00 0.00 5.14
503 514 2.126914 TGAAACCAAAAATGCGTCCG 57.873 45.000 0.00 0.00 0.00 4.79
504 515 4.551388 TGTATGAAACCAAAAATGCGTCC 58.449 39.130 0.00 0.00 0.00 4.79
505 516 5.062058 CCATGTATGAAACCAAAAATGCGTC 59.938 40.000 0.00 0.00 0.00 5.19
507 518 4.201705 GCCATGTATGAAACCAAAAATGCG 60.202 41.667 0.00 0.00 0.00 4.73
508 519 4.694509 TGCCATGTATGAAACCAAAAATGC 59.305 37.500 0.00 0.00 0.00 3.56
509 520 6.988622 ATGCCATGTATGAAACCAAAAATG 57.011 33.333 0.00 0.00 0.00 2.32
642 1425 7.793927 AAACTTTTGTGAACCTGTTTTTCAA 57.206 28.000 0.00 0.00 34.78 2.69
644 1427 9.588774 GTTTAAACTTTTGTGAACCTGTTTTTC 57.411 29.630 11.18 0.00 0.00 2.29
678 1461 9.442047 TTTGTTTACATCTTTTGGAAAACACAT 57.558 25.926 0.00 0.00 39.88 3.21
780 1563 6.073548 CCCGTCTGCTGATATAGATTGAAAAC 60.074 42.308 0.00 0.00 0.00 2.43
785 1568 4.527509 ACCCGTCTGCTGATATAGATTG 57.472 45.455 0.00 0.00 0.00 2.67
793 1577 2.270352 TGAAAAACCCGTCTGCTGAT 57.730 45.000 0.00 0.00 0.00 2.90
823 1607 4.714308 TGGTTTCCCTCATGTTTTTCAACT 59.286 37.500 0.00 0.00 33.58 3.16
836 1620 3.010420 CGATTTTCCTCTGGTTTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
1063 1865 1.738099 CTCGAAGTTGGTGGCGGAG 60.738 63.158 0.00 0.00 0.00 4.63
1648 2456 8.024285 GGCAGCAGTAACTATTCACTATAGTAG 58.976 40.741 4.74 1.86 46.92 2.57
1730 2540 7.945033 TGAAAATTCGAAAAATTAAGCAGCT 57.055 28.000 0.00 0.00 0.00 4.24
1877 2706 1.330234 GGGTTAGCCCGGTTCAAAAA 58.670 50.000 0.00 0.00 46.51 1.94
1878 2707 3.039452 GGGTTAGCCCGGTTCAAAA 57.961 52.632 0.00 0.00 46.51 2.44
1879 2708 4.826248 GGGTTAGCCCGGTTCAAA 57.174 55.556 0.00 0.00 46.51 2.69
1888 2717 2.243994 AGTAATGGAAAGGGGGTTAGCC 59.756 50.000 0.00 0.00 0.00 3.93
1889 2718 3.053917 TGAGTAATGGAAAGGGGGTTAGC 60.054 47.826 0.00 0.00 0.00 3.09
1890 2719 4.855298 TGAGTAATGGAAAGGGGGTTAG 57.145 45.455 0.00 0.00 0.00 2.34
1891 2720 4.354387 TGTTGAGTAATGGAAAGGGGGTTA 59.646 41.667 0.00 0.00 0.00 2.85
1892 2721 3.141272 TGTTGAGTAATGGAAAGGGGGTT 59.859 43.478 0.00 0.00 0.00 4.11
1893 2722 2.719705 TGTTGAGTAATGGAAAGGGGGT 59.280 45.455 0.00 0.00 0.00 4.95
1894 2723 3.089284 GTGTTGAGTAATGGAAAGGGGG 58.911 50.000 0.00 0.00 0.00 5.40
1895 2724 3.506067 GTGTGTTGAGTAATGGAAAGGGG 59.494 47.826 0.00 0.00 0.00 4.79
1896 2725 4.398319 AGTGTGTTGAGTAATGGAAAGGG 58.602 43.478 0.00 0.00 0.00 3.95
1897 2726 6.231211 AGTAGTGTGTTGAGTAATGGAAAGG 58.769 40.000 0.00 0.00 0.00 3.11
1898 2727 7.545965 CCTAGTAGTGTGTTGAGTAATGGAAAG 59.454 40.741 0.00 0.00 0.00 2.62
1899 2728 7.233962 TCCTAGTAGTGTGTTGAGTAATGGAAA 59.766 37.037 0.00 0.00 0.00 3.13
1900 2729 6.722590 TCCTAGTAGTGTGTTGAGTAATGGAA 59.277 38.462 0.00 0.00 0.00 3.53
1901 2730 6.250711 TCCTAGTAGTGTGTTGAGTAATGGA 58.749 40.000 0.00 0.00 0.00 3.41
1902 2731 6.525578 TCCTAGTAGTGTGTTGAGTAATGG 57.474 41.667 0.00 0.00 0.00 3.16
1903 2732 7.331193 GGTTTCCTAGTAGTGTGTTGAGTAATG 59.669 40.741 0.00 0.00 0.00 1.90
1904 2733 7.384477 GGTTTCCTAGTAGTGTGTTGAGTAAT 58.616 38.462 0.00 0.00 0.00 1.89
1905 2734 6.239402 GGGTTTCCTAGTAGTGTGTTGAGTAA 60.239 42.308 0.00 0.00 0.00 2.24
1906 2735 5.244626 GGGTTTCCTAGTAGTGTGTTGAGTA 59.755 44.000 0.00 0.00 0.00 2.59
1907 2736 4.040095 GGGTTTCCTAGTAGTGTGTTGAGT 59.960 45.833 0.00 0.00 0.00 3.41
1908 2737 4.039973 TGGGTTTCCTAGTAGTGTGTTGAG 59.960 45.833 0.00 0.00 0.00 3.02
1909 2738 3.968649 TGGGTTTCCTAGTAGTGTGTTGA 59.031 43.478 0.00 0.00 0.00 3.18
1910 2739 4.062991 GTGGGTTTCCTAGTAGTGTGTTG 58.937 47.826 0.00 0.00 0.00 3.33
1911 2740 3.072038 GGTGGGTTTCCTAGTAGTGTGTT 59.928 47.826 0.00 0.00 0.00 3.32
1912 2741 2.636403 GGTGGGTTTCCTAGTAGTGTGT 59.364 50.000 0.00 0.00 0.00 3.72
1913 2742 2.353406 CGGTGGGTTTCCTAGTAGTGTG 60.353 54.545 0.00 0.00 0.00 3.82
1914 2743 1.897802 CGGTGGGTTTCCTAGTAGTGT 59.102 52.381 0.00 0.00 0.00 3.55
1915 2744 1.405121 GCGGTGGGTTTCCTAGTAGTG 60.405 57.143 0.00 0.00 0.00 2.74
1916 2745 0.900421 GCGGTGGGTTTCCTAGTAGT 59.100 55.000 0.00 0.00 0.00 2.73
1917 2746 0.899720 TGCGGTGGGTTTCCTAGTAG 59.100 55.000 0.00 0.00 0.00 2.57
1918 2747 0.609662 GTGCGGTGGGTTTCCTAGTA 59.390 55.000 0.00 0.00 0.00 1.82
1919 2748 1.125711 AGTGCGGTGGGTTTCCTAGT 61.126 55.000 0.00 0.00 0.00 2.57
1920 2749 0.391263 GAGTGCGGTGGGTTTCCTAG 60.391 60.000 0.00 0.00 0.00 3.02
1921 2750 1.675219 GAGTGCGGTGGGTTTCCTA 59.325 57.895 0.00 0.00 0.00 2.94
1922 2751 2.430367 GAGTGCGGTGGGTTTCCT 59.570 61.111 0.00 0.00 0.00 3.36
1923 2752 3.047877 CGAGTGCGGTGGGTTTCC 61.048 66.667 0.00 0.00 0.00 3.13
1924 2753 3.723348 GCGAGTGCGGTGGGTTTC 61.723 66.667 0.00 0.00 38.16 2.78
1941 2770 4.712425 ACTCGTTTCGACGGCGGG 62.712 66.667 12.58 2.23 38.28 6.13
1942 2771 3.467119 CACTCGTTTCGACGGCGG 61.467 66.667 12.58 0.00 38.28 6.13
1943 2772 4.117372 GCACTCGTTTCGACGGCG 62.117 66.667 2.87 2.87 39.35 6.46
1944 2773 0.801067 ATAGCACTCGTTTCGACGGC 60.801 55.000 0.00 0.00 32.46 5.68
1945 2774 0.914551 CATAGCACTCGTTTCGACGG 59.085 55.000 0.00 0.00 0.00 4.79
1946 2775 0.914551 CCATAGCACTCGTTTCGACG 59.085 55.000 0.00 0.00 0.00 5.12
1947 2776 1.278238 CCCATAGCACTCGTTTCGAC 58.722 55.000 0.00 0.00 0.00 4.20
1948 2777 0.174845 CCCCATAGCACTCGTTTCGA 59.825 55.000 0.00 0.00 0.00 3.71
1949 2778 1.429148 GCCCCATAGCACTCGTTTCG 61.429 60.000 0.00 0.00 0.00 3.46
1950 2779 1.429148 CGCCCCATAGCACTCGTTTC 61.429 60.000 0.00 0.00 0.00 2.78
1951 2780 1.449601 CGCCCCATAGCACTCGTTT 60.450 57.895 0.00 0.00 0.00 3.60
1952 2781 1.895020 TTCGCCCCATAGCACTCGTT 61.895 55.000 0.00 0.00 0.00 3.85
1953 2782 1.895020 TTTCGCCCCATAGCACTCGT 61.895 55.000 0.00 0.00 0.00 4.18
1954 2783 0.742990 TTTTCGCCCCATAGCACTCG 60.743 55.000 0.00 0.00 0.00 4.18
1955 2784 0.733150 GTTTTCGCCCCATAGCACTC 59.267 55.000 0.00 0.00 0.00 3.51
1956 2785 0.679960 GGTTTTCGCCCCATAGCACT 60.680 55.000 0.00 0.00 0.00 4.40
1957 2786 0.679960 AGGTTTTCGCCCCATAGCAC 60.680 55.000 0.00 0.00 0.00 4.40
1958 2787 0.913205 TAGGTTTTCGCCCCATAGCA 59.087 50.000 0.00 0.00 0.00 3.49
1959 2788 1.134189 ACTAGGTTTTCGCCCCATAGC 60.134 52.381 0.00 0.00 0.00 2.97
1960 2789 3.802675 GCTACTAGGTTTTCGCCCCATAG 60.803 52.174 0.00 0.00 0.00 2.23
1961 2790 2.103601 GCTACTAGGTTTTCGCCCCATA 59.896 50.000 0.00 0.00 0.00 2.74
1962 2791 1.134189 GCTACTAGGTTTTCGCCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
1963 2792 0.251073 GCTACTAGGTTTTCGCCCCA 59.749 55.000 0.00 0.00 0.00 4.96
1964 2793 0.251073 TGCTACTAGGTTTTCGCCCC 59.749 55.000 0.00 0.00 0.00 5.80
1965 2794 1.366679 GTGCTACTAGGTTTTCGCCC 58.633 55.000 0.00 0.00 0.00 6.13
1966 2795 1.338389 TGGTGCTACTAGGTTTTCGCC 60.338 52.381 0.00 0.00 0.00 5.54
1967 2796 2.000447 CTGGTGCTACTAGGTTTTCGC 59.000 52.381 0.00 0.00 0.00 4.70
1968 2797 3.314541 ACTGGTGCTACTAGGTTTTCG 57.685 47.619 0.00 0.00 30.19 3.46
1969 2798 5.185442 AGTCTACTGGTGCTACTAGGTTTTC 59.815 44.000 0.00 0.00 30.19 2.29
1970 2799 5.085219 AGTCTACTGGTGCTACTAGGTTTT 58.915 41.667 0.00 0.00 30.19 2.43
1971 2800 4.675038 AGTCTACTGGTGCTACTAGGTTT 58.325 43.478 0.00 0.00 30.19 3.27
1972 2801 4.319037 AGTCTACTGGTGCTACTAGGTT 57.681 45.455 0.00 0.00 30.19 3.50
1973 2802 4.720773 TCTAGTCTACTGGTGCTACTAGGT 59.279 45.833 0.00 0.00 39.91 3.08
1974 2803 5.058490 GTCTAGTCTACTGGTGCTACTAGG 58.942 50.000 0.00 0.00 39.91 3.02
1975 2804 5.058490 GGTCTAGTCTACTGGTGCTACTAG 58.942 50.000 0.00 0.00 40.53 2.57
1976 2805 4.720773 AGGTCTAGTCTACTGGTGCTACTA 59.279 45.833 0.00 0.00 0.00 1.82
1977 2806 3.524380 AGGTCTAGTCTACTGGTGCTACT 59.476 47.826 0.00 0.00 0.00 2.57
1978 2807 3.888583 AGGTCTAGTCTACTGGTGCTAC 58.111 50.000 0.00 0.00 0.00 3.58
1979 2808 5.908562 ATAGGTCTAGTCTACTGGTGCTA 57.091 43.478 0.00 0.00 0.00 3.49
1980 2809 4.799715 ATAGGTCTAGTCTACTGGTGCT 57.200 45.455 0.00 0.00 0.00 4.40
1981 2810 5.826737 TGTAATAGGTCTAGTCTACTGGTGC 59.173 44.000 0.00 0.00 0.00 5.01
1982 2811 7.876936 TTGTAATAGGTCTAGTCTACTGGTG 57.123 40.000 0.00 0.00 0.00 4.17
1983 2812 8.890410 TTTTGTAATAGGTCTAGTCTACTGGT 57.110 34.615 0.00 0.00 0.00 4.00
1984 2813 9.186837 TCTTTTGTAATAGGTCTAGTCTACTGG 57.813 37.037 0.00 0.00 0.00 4.00
1989 2818 8.862085 GGCTATCTTTTGTAATAGGTCTAGTCT 58.138 37.037 0.00 0.00 0.00 3.24
1990 2819 8.639761 TGGCTATCTTTTGTAATAGGTCTAGTC 58.360 37.037 0.00 0.00 0.00 2.59
1991 2820 8.422566 GTGGCTATCTTTTGTAATAGGTCTAGT 58.577 37.037 0.00 0.00 0.00 2.57
1992 2821 8.421784 TGTGGCTATCTTTTGTAATAGGTCTAG 58.578 37.037 0.00 0.00 0.00 2.43
1993 2822 8.313944 TGTGGCTATCTTTTGTAATAGGTCTA 57.686 34.615 0.00 0.00 0.00 2.59
1994 2823 7.195374 TGTGGCTATCTTTTGTAATAGGTCT 57.805 36.000 0.00 0.00 0.00 3.85
1995 2824 9.555727 TTATGTGGCTATCTTTTGTAATAGGTC 57.444 33.333 0.00 0.00 0.00 3.85
1996 2825 9.338622 GTTATGTGGCTATCTTTTGTAATAGGT 57.661 33.333 0.00 0.00 0.00 3.08
1997 2826 8.784043 GGTTATGTGGCTATCTTTTGTAATAGG 58.216 37.037 0.00 0.00 0.00 2.57
1998 2827 9.337396 TGGTTATGTGGCTATCTTTTGTAATAG 57.663 33.333 0.00 0.00 0.00 1.73
1999 2828 9.116067 GTGGTTATGTGGCTATCTTTTGTAATA 57.884 33.333 0.00 0.00 0.00 0.98
2000 2829 7.613801 TGTGGTTATGTGGCTATCTTTTGTAAT 59.386 33.333 0.00 0.00 0.00 1.89
2001 2830 6.943146 TGTGGTTATGTGGCTATCTTTTGTAA 59.057 34.615 0.00 0.00 0.00 2.41
2002 2831 6.477253 TGTGGTTATGTGGCTATCTTTTGTA 58.523 36.000 0.00 0.00 0.00 2.41
2003 2832 5.321102 TGTGGTTATGTGGCTATCTTTTGT 58.679 37.500 0.00 0.00 0.00 2.83
2004 2833 5.895636 TGTGGTTATGTGGCTATCTTTTG 57.104 39.130 0.00 0.00 0.00 2.44
2005 2834 6.010219 ACTTGTGGTTATGTGGCTATCTTTT 58.990 36.000 0.00 0.00 0.00 2.27
2006 2835 5.570320 ACTTGTGGTTATGTGGCTATCTTT 58.430 37.500 0.00 0.00 0.00 2.52
2007 2836 5.179452 ACTTGTGGTTATGTGGCTATCTT 57.821 39.130 0.00 0.00 0.00 2.40
2008 2837 4.844349 ACTTGTGGTTATGTGGCTATCT 57.156 40.909 0.00 0.00 0.00 1.98
2009 2838 6.425114 CAGATACTTGTGGTTATGTGGCTATC 59.575 42.308 0.00 0.00 0.00 2.08
2010 2839 6.291377 CAGATACTTGTGGTTATGTGGCTAT 58.709 40.000 0.00 0.00 0.00 2.97
2011 2840 5.396324 CCAGATACTTGTGGTTATGTGGCTA 60.396 44.000 0.00 0.00 31.60 3.93
2012 2841 4.517285 CAGATACTTGTGGTTATGTGGCT 58.483 43.478 0.00 0.00 0.00 4.75
2013 2842 3.627577 CCAGATACTTGTGGTTATGTGGC 59.372 47.826 0.00 0.00 31.60 5.01
2014 2843 4.080582 TCCCAGATACTTGTGGTTATGTGG 60.081 45.833 0.00 0.00 34.43 4.17
2015 2844 5.097742 TCCCAGATACTTGTGGTTATGTG 57.902 43.478 0.00 0.00 34.43 3.21
2016 2845 5.497474 GTTCCCAGATACTTGTGGTTATGT 58.503 41.667 0.00 0.00 34.43 2.29
2017 2846 4.881850 GGTTCCCAGATACTTGTGGTTATG 59.118 45.833 0.00 0.00 34.43 1.90
2018 2847 4.383770 CGGTTCCCAGATACTTGTGGTTAT 60.384 45.833 0.00 0.00 34.43 1.89
2019 2848 3.055675 CGGTTCCCAGATACTTGTGGTTA 60.056 47.826 0.00 0.00 34.43 2.85
2020 2849 2.290071 CGGTTCCCAGATACTTGTGGTT 60.290 50.000 0.00 0.00 34.43 3.67
2021 2850 1.278127 CGGTTCCCAGATACTTGTGGT 59.722 52.381 0.00 0.00 34.43 4.16
2022 2851 1.278127 ACGGTTCCCAGATACTTGTGG 59.722 52.381 0.00 0.00 36.03 4.17
2023 2852 2.762535 ACGGTTCCCAGATACTTGTG 57.237 50.000 0.00 0.00 0.00 3.33
2024 2853 2.167900 GCTACGGTTCCCAGATACTTGT 59.832 50.000 0.00 0.00 0.00 3.16
2025 2854 2.483188 GGCTACGGTTCCCAGATACTTG 60.483 54.545 0.00 0.00 0.00 3.16
2026 2855 1.761198 GGCTACGGTTCCCAGATACTT 59.239 52.381 0.00 0.00 0.00 2.24
2027 2856 1.411041 GGCTACGGTTCCCAGATACT 58.589 55.000 0.00 0.00 0.00 2.12
2028 2857 0.391966 GGGCTACGGTTCCCAGATAC 59.608 60.000 11.80 0.00 42.18 2.24
2029 2858 2.830475 GGGCTACGGTTCCCAGATA 58.170 57.895 11.80 0.00 42.18 1.98
2030 2859 3.643398 GGGCTACGGTTCCCAGAT 58.357 61.111 11.80 0.00 42.18 2.90
2034 2863 2.240162 CTGAGTGGGCTACGGTTCCC 62.240 65.000 10.25 10.25 42.93 3.97
2035 2864 1.218316 CTGAGTGGGCTACGGTTCC 59.782 63.158 0.00 0.00 0.00 3.62
2036 2865 1.134560 CTACTGAGTGGGCTACGGTTC 59.865 57.143 0.00 0.00 0.00 3.62
2037 2866 1.183549 CTACTGAGTGGGCTACGGTT 58.816 55.000 0.00 0.00 0.00 4.44
2038 2867 0.683504 CCTACTGAGTGGGCTACGGT 60.684 60.000 0.86 0.00 0.00 4.83
2039 2868 2.116383 CCTACTGAGTGGGCTACGG 58.884 63.158 0.86 0.00 0.00 4.02
2045 2874 0.755686 GAGGATGCCTACTGAGTGGG 59.244 60.000 11.03 11.03 37.24 4.61
2046 2875 1.411977 CAGAGGATGCCTACTGAGTGG 59.588 57.143 0.00 0.00 33.66 4.00
2047 2876 2.100584 GACAGAGGATGCCTACTGAGTG 59.899 54.545 15.18 0.00 34.89 3.51
2048 2877 2.383855 GACAGAGGATGCCTACTGAGT 58.616 52.381 15.18 0.00 34.89 3.41
2049 2878 1.336440 CGACAGAGGATGCCTACTGAG 59.664 57.143 15.18 8.24 34.89 3.35
2050 2879 1.393603 CGACAGAGGATGCCTACTGA 58.606 55.000 15.18 0.00 34.89 3.41
2051 2880 0.387202 CCGACAGAGGATGCCTACTG 59.613 60.000 0.00 0.00 36.01 2.74
2052 2881 0.259065 TCCGACAGAGGATGCCTACT 59.741 55.000 0.00 0.00 34.92 2.57
2053 2882 0.386113 GTCCGACAGAGGATGCCTAC 59.614 60.000 0.00 0.00 43.04 3.18
2054 2883 0.033503 TGTCCGACAGAGGATGCCTA 60.034 55.000 0.00 0.00 43.04 3.93
2055 2884 1.305297 TGTCCGACAGAGGATGCCT 60.305 57.895 0.00 0.00 43.04 4.75
2056 2885 3.298958 TGTCCGACAGAGGATGCC 58.701 61.111 0.00 0.00 43.04 4.40
2064 2893 1.593196 TTCTTTTGCCTGTCCGACAG 58.407 50.000 19.97 19.97 45.53 3.51
2065 2894 1.673920 GTTTCTTTTGCCTGTCCGACA 59.326 47.619 0.29 0.29 0.00 4.35
2066 2895 1.673920 TGTTTCTTTTGCCTGTCCGAC 59.326 47.619 0.00 0.00 0.00 4.79
2067 2896 1.946768 CTGTTTCTTTTGCCTGTCCGA 59.053 47.619 0.00 0.00 0.00 4.55
2068 2897 1.600413 GCTGTTTCTTTTGCCTGTCCG 60.600 52.381 0.00 0.00 0.00 4.79
2069 2898 1.408702 TGCTGTTTCTTTTGCCTGTCC 59.591 47.619 0.00 0.00 0.00 4.02
2070 2899 2.869233 TGCTGTTTCTTTTGCCTGTC 57.131 45.000 0.00 0.00 0.00 3.51
2071 2900 3.608316 TTTGCTGTTTCTTTTGCCTGT 57.392 38.095 0.00 0.00 0.00 4.00
2072 2901 6.347888 CCATATTTTGCTGTTTCTTTTGCCTG 60.348 38.462 0.00 0.00 0.00 4.85
2073 2902 5.702209 CCATATTTTGCTGTTTCTTTTGCCT 59.298 36.000 0.00 0.00 0.00 4.75
2074 2903 5.106594 CCCATATTTTGCTGTTTCTTTTGCC 60.107 40.000 0.00 0.00 0.00 4.52
2075 2904 5.617529 GCCCATATTTTGCTGTTTCTTTTGC 60.618 40.000 0.00 0.00 0.00 3.68
2076 2905 5.389725 CGCCCATATTTTGCTGTTTCTTTTG 60.390 40.000 0.00 0.00 0.00 2.44
2077 2906 4.690280 CGCCCATATTTTGCTGTTTCTTTT 59.310 37.500 0.00 0.00 0.00 2.27
2078 2907 4.244862 CGCCCATATTTTGCTGTTTCTTT 58.755 39.130 0.00 0.00 0.00 2.52
2079 2908 3.848726 CGCCCATATTTTGCTGTTTCTT 58.151 40.909 0.00 0.00 0.00 2.52
2080 2909 2.417243 GCGCCCATATTTTGCTGTTTCT 60.417 45.455 0.00 0.00 0.00 2.52
2081 2910 1.926510 GCGCCCATATTTTGCTGTTTC 59.073 47.619 0.00 0.00 0.00 2.78
2082 2911 1.550072 AGCGCCCATATTTTGCTGTTT 59.450 42.857 2.29 0.00 33.99 2.83
2083 2912 1.135024 CAGCGCCCATATTTTGCTGTT 60.135 47.619 2.29 0.00 45.96 3.16
2084 2913 0.457035 CAGCGCCCATATTTTGCTGT 59.543 50.000 2.29 0.00 45.96 4.40
2085 2914 3.261441 CAGCGCCCATATTTTGCTG 57.739 52.632 2.29 0.00 45.88 4.41
2086 2915 1.394266 CCCAGCGCCCATATTTTGCT 61.394 55.000 2.29 0.00 36.05 3.91
2087 2916 1.067916 CCCAGCGCCCATATTTTGC 59.932 57.895 2.29 0.00 0.00 3.68
2088 2917 0.670162 CTCCCAGCGCCCATATTTTG 59.330 55.000 2.29 0.00 0.00 2.44
2089 2918 0.550914 TCTCCCAGCGCCCATATTTT 59.449 50.000 2.29 0.00 0.00 1.82
2090 2919 0.109342 CTCTCCCAGCGCCCATATTT 59.891 55.000 2.29 0.00 0.00 1.40
2091 2920 0.764369 TCTCTCCCAGCGCCCATATT 60.764 55.000 2.29 0.00 0.00 1.28
2092 2921 0.546267 ATCTCTCCCAGCGCCCATAT 60.546 55.000 2.29 0.00 0.00 1.78
2093 2922 1.152247 ATCTCTCCCAGCGCCCATA 60.152 57.895 2.29 0.00 0.00 2.74
2094 2923 2.447379 ATCTCTCCCAGCGCCCAT 60.447 61.111 2.29 0.00 0.00 4.00
2095 2924 3.157252 GATCTCTCCCAGCGCCCA 61.157 66.667 2.29 0.00 0.00 5.36
2096 2925 2.841988 AGATCTCTCCCAGCGCCC 60.842 66.667 2.29 0.00 0.00 6.13
2097 2926 2.420890 CAGATCTCTCCCAGCGCC 59.579 66.667 2.29 0.00 0.00 6.53
2098 2927 2.280052 GCAGATCTCTCCCAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
2099 2928 0.249405 GAAGCAGATCTCTCCCAGCG 60.249 60.000 0.00 0.00 0.00 5.18
2100 2929 1.122227 AGAAGCAGATCTCTCCCAGC 58.878 55.000 0.00 0.00 0.00 4.85
2101 2930 3.565307 ACTAGAAGCAGATCTCTCCCAG 58.435 50.000 0.00 0.00 0.00 4.45
2102 2931 3.678965 ACTAGAAGCAGATCTCTCCCA 57.321 47.619 0.00 0.00 0.00 4.37
2103 2932 5.596772 AGTAAACTAGAAGCAGATCTCTCCC 59.403 44.000 0.00 0.00 0.00 4.30
2104 2933 6.503524 CAGTAAACTAGAAGCAGATCTCTCC 58.496 44.000 0.00 0.00 0.00 3.71
2105 2934 5.977129 GCAGTAAACTAGAAGCAGATCTCTC 59.023 44.000 0.00 0.00 0.00 3.20
2106 2935 5.656416 AGCAGTAAACTAGAAGCAGATCTCT 59.344 40.000 0.00 0.00 0.00 3.10
2107 2936 5.748152 CAGCAGTAAACTAGAAGCAGATCTC 59.252 44.000 0.00 0.00 0.00 2.75
2108 2937 5.186797 ACAGCAGTAAACTAGAAGCAGATCT 59.813 40.000 0.00 0.00 0.00 2.75
2109 2938 5.415221 ACAGCAGTAAACTAGAAGCAGATC 58.585 41.667 0.00 0.00 0.00 2.75
2110 2939 5.413309 ACAGCAGTAAACTAGAAGCAGAT 57.587 39.130 0.00 0.00 0.00 2.90
2111 2940 4.873746 ACAGCAGTAAACTAGAAGCAGA 57.126 40.909 0.00 0.00 0.00 4.26
2112 2941 4.991056 TCAACAGCAGTAAACTAGAAGCAG 59.009 41.667 0.00 0.00 0.00 4.24
2113 2942 4.956085 TCAACAGCAGTAAACTAGAAGCA 58.044 39.130 0.00 0.00 0.00 3.91
2114 2943 6.370166 AGAATCAACAGCAGTAAACTAGAAGC 59.630 38.462 0.00 0.00 0.00 3.86
2115 2944 7.897575 AGAATCAACAGCAGTAAACTAGAAG 57.102 36.000 0.00 0.00 0.00 2.85
2116 2945 8.559536 CAAAGAATCAACAGCAGTAAACTAGAA 58.440 33.333 0.00 0.00 0.00 2.10
2117 2946 7.307989 GCAAAGAATCAACAGCAGTAAACTAGA 60.308 37.037 0.00 0.00 0.00 2.43
2118 2947 6.798959 GCAAAGAATCAACAGCAGTAAACTAG 59.201 38.462 0.00 0.00 0.00 2.57
2119 2948 6.262049 TGCAAAGAATCAACAGCAGTAAACTA 59.738 34.615 0.00 0.00 0.00 2.24
2120 2949 5.067674 TGCAAAGAATCAACAGCAGTAAACT 59.932 36.000 0.00 0.00 0.00 2.66
2121 2950 5.280945 TGCAAAGAATCAACAGCAGTAAAC 58.719 37.500 0.00 0.00 0.00 2.01
2122 2951 5.512753 TGCAAAGAATCAACAGCAGTAAA 57.487 34.783 0.00 0.00 0.00 2.01
2129 2958 5.962433 AGAATCCATGCAAAGAATCAACAG 58.038 37.500 0.00 0.00 0.00 3.16
2228 3062 2.224137 TGCGGTTTGAAAATGCATCCAA 60.224 40.909 0.00 2.24 30.57 3.53
2342 3182 4.081642 ACTCAGAAAGCCAGCGAGTATAAA 60.082 41.667 0.00 0.00 35.24 1.40
2347 3187 0.320247 CACTCAGAAAGCCAGCGAGT 60.320 55.000 0.00 0.00 37.42 4.18
2372 3212 5.195001 TCCAAAGCAAATACACTTCCAAC 57.805 39.130 0.00 0.00 0.00 3.77
2391 3232 9.743057 CAAGAATGTTACTGTTACAAAAATCCA 57.257 29.630 3.57 0.00 0.00 3.41
2562 3404 1.414181 CCGGCCATAGACACAGAAGAT 59.586 52.381 2.24 0.00 0.00 2.40
2637 3479 1.855978 CGTTTGTGTCGCTTGTACTCA 59.144 47.619 0.00 0.00 0.00 3.41
2647 3508 1.658968 GCTGTTAAGCGTTTGTGTCG 58.341 50.000 0.00 0.00 40.27 4.35
2737 3599 5.171476 ACTCGTTAGATTCAGTTGGTCATG 58.829 41.667 0.00 0.00 0.00 3.07
2864 3740 4.681074 TGATAACTACGATTGGGCATGA 57.319 40.909 0.00 0.00 0.00 3.07
3487 4466 4.263068 CCAGCCTTCTTTAGAGGTTTCTCA 60.263 45.833 0.00 0.00 42.34 3.27
3499 4478 2.765699 TCTGTTTTTGCCAGCCTTCTTT 59.234 40.909 0.00 0.00 0.00 2.52
3543 4522 5.799936 CGTGTGGATTTACTAAAGGCAAATG 59.200 40.000 0.00 0.00 0.00 2.32
3654 4637 3.938963 TCTTGTCGTTTTGCTGTTTCTCT 59.061 39.130 0.00 0.00 0.00 3.10
3714 4697 1.822990 CTTGCCTTGCTGACATCCAAT 59.177 47.619 0.00 0.00 0.00 3.16
3798 4783 6.021596 CGTGATTGCCTGTTATCAAAGTTAC 58.978 40.000 0.00 0.00 32.94 2.50
3948 4936 2.932614 GTCTCAACGATGATGTGGAAGG 59.067 50.000 0.00 0.00 34.37 3.46
3949 4937 3.588955 TGTCTCAACGATGATGTGGAAG 58.411 45.455 0.00 0.00 34.37 3.46
3950 4938 3.676291 TGTCTCAACGATGATGTGGAA 57.324 42.857 0.00 0.00 34.37 3.53
3998 4987 4.686191 AGACTATCCTTGATGCTTGGAG 57.314 45.455 0.00 0.00 32.95 3.86
4014 5003 6.491745 TGACCATACAAAATTTGCCAAGACTA 59.508 34.615 5.52 0.00 0.00 2.59
4071 5060 2.908351 ACCAGTGGTAACCGGAATAACT 59.092 45.455 14.87 1.67 32.11 2.24
4086 5075 2.493035 TGCGCCATATCATAACCAGTG 58.507 47.619 4.18 0.00 0.00 3.66
4146 5143 8.887036 AACATTTCCCAAACTTCTGAAAATAC 57.113 30.769 0.00 0.00 31.20 1.89
4252 5251 9.026121 AGCATAGAGACTCTTTACTTAACTCAA 57.974 33.333 10.96 0.00 0.00 3.02
4270 5269 1.106285 GGGGTTGGCAAAGCATAGAG 58.894 55.000 0.00 0.00 35.41 2.43
4300 5299 4.036852 TCACCAGAGAGATATAGCGTTGTG 59.963 45.833 0.00 0.00 0.00 3.33
4301 5300 4.036971 GTCACCAGAGAGATATAGCGTTGT 59.963 45.833 0.00 0.00 0.00 3.32
4302 5301 4.541779 GTCACCAGAGAGATATAGCGTTG 58.458 47.826 0.00 0.00 0.00 4.10
4303 5302 3.570550 GGTCACCAGAGAGATATAGCGTT 59.429 47.826 0.00 0.00 0.00 4.84
4304 5303 3.150767 GGTCACCAGAGAGATATAGCGT 58.849 50.000 0.00 0.00 0.00 5.07
4305 5304 2.160615 CGGTCACCAGAGAGATATAGCG 59.839 54.545 0.00 0.00 0.00 4.26
4306 5305 3.057876 CACGGTCACCAGAGAGATATAGC 60.058 52.174 0.00 0.00 0.00 2.97
4307 5306 4.390264 TCACGGTCACCAGAGAGATATAG 58.610 47.826 0.00 0.00 0.00 1.31
4308 5307 4.432980 TCACGGTCACCAGAGAGATATA 57.567 45.455 0.00 0.00 0.00 0.86
4309 5308 3.298686 TCACGGTCACCAGAGAGATAT 57.701 47.619 0.00 0.00 0.00 1.63
4310 5309 2.753452 GTTCACGGTCACCAGAGAGATA 59.247 50.000 0.00 0.00 0.00 1.98
4311 5310 1.546476 GTTCACGGTCACCAGAGAGAT 59.454 52.381 0.00 0.00 0.00 2.75
4312 5311 0.959553 GTTCACGGTCACCAGAGAGA 59.040 55.000 0.00 0.00 0.00 3.10
4313 5312 0.038159 GGTTCACGGTCACCAGAGAG 60.038 60.000 0.00 0.00 32.74 3.20
4314 5313 1.469335 GGGTTCACGGTCACCAGAGA 61.469 60.000 0.00 0.00 34.36 3.10
4315 5314 1.004918 GGGTTCACGGTCACCAGAG 60.005 63.158 0.00 0.00 34.36 3.35
4316 5315 0.178955 TAGGGTTCACGGTCACCAGA 60.179 55.000 0.00 0.00 34.36 3.86
4317 5316 0.902531 ATAGGGTTCACGGTCACCAG 59.097 55.000 0.00 0.00 34.36 4.00
4318 5317 2.234896 TATAGGGTTCACGGTCACCA 57.765 50.000 0.00 0.00 34.36 4.17
4319 5318 3.304928 CGTATATAGGGTTCACGGTCACC 60.305 52.174 0.00 0.00 0.00 4.02
4320 5319 3.565482 TCGTATATAGGGTTCACGGTCAC 59.435 47.826 2.74 0.00 33.59 3.67
4371 5370 4.200092 GAGATCTAGCAACCCCGATTTTT 58.800 43.478 0.00 0.00 0.00 1.94
4381 5380 7.233389 TCATATAGGGTTGAGATCTAGCAAC 57.767 40.000 15.60 15.60 42.67 4.17
4460 5460 5.411781 ACATCTGTTGAGACTCGGTTAATC 58.588 41.667 0.00 0.00 0.00 1.75
4461 5461 5.407407 ACATCTGTTGAGACTCGGTTAAT 57.593 39.130 0.00 0.00 0.00 1.40
4564 5564 1.265635 CGCGGTTAGATCTCTGAGAGG 59.734 57.143 13.50 0.00 0.00 3.69
4565 5565 1.944024 ACGCGGTTAGATCTCTGAGAG 59.056 52.381 12.47 2.28 0.00 3.20
4596 5596 8.062065 GGTTTAACACCATGGATTTTCAGATA 57.938 34.615 21.47 0.00 46.42 1.98
4625 5625 5.645067 CAGCAACTGGTTCTAGAATGATTGA 59.355 40.000 8.75 0.00 0.00 2.57
4671 5671 6.894103 AGATCAAATGGCTTTCTCTTGGTATT 59.106 34.615 0.00 0.00 0.00 1.89
4743 5744 9.567776 TTTTAATGATGAAGACTTGAAGTGGTA 57.432 29.630 0.90 0.00 0.00 3.25
4753 5754 7.995289 TGTGTGTGTTTTTAATGATGAAGACT 58.005 30.769 0.00 0.00 0.00 3.24
4789 5810 3.149196 CTGTTTGCTGGTGATGGTAAGT 58.851 45.455 0.00 0.00 0.00 2.24
4790 5811 3.411446 TCTGTTTGCTGGTGATGGTAAG 58.589 45.455 0.00 0.00 0.00 2.34
4791 5812 3.500448 TCTGTTTGCTGGTGATGGTAA 57.500 42.857 0.00 0.00 0.00 2.85
4792 5813 3.500448 TTCTGTTTGCTGGTGATGGTA 57.500 42.857 0.00 0.00 0.00 3.25
4793 5814 2.363306 TTCTGTTTGCTGGTGATGGT 57.637 45.000 0.00 0.00 0.00 3.55
4794 5815 3.947910 AATTCTGTTTGCTGGTGATGG 57.052 42.857 0.00 0.00 0.00 3.51
4797 5818 4.464008 AGAGAAATTCTGTTTGCTGGTGA 58.536 39.130 0.00 0.00 33.93 4.02
4800 5821 5.006386 AGGTAGAGAAATTCTGTTTGCTGG 58.994 41.667 0.00 0.00 36.61 4.85
4801 5822 7.672983 TTAGGTAGAGAAATTCTGTTTGCTG 57.327 36.000 0.00 0.00 36.61 4.41
4802 5823 7.554476 GGATTAGGTAGAGAAATTCTGTTTGCT 59.446 37.037 0.00 0.00 36.61 3.91
4803 5824 7.336931 TGGATTAGGTAGAGAAATTCTGTTTGC 59.663 37.037 0.00 0.00 36.61 3.68
4887 5908 4.509756 CACTGCACGCAGAGCTAT 57.490 55.556 25.09 0.00 46.38 2.97
4908 5929 4.359105 ACCAGTAGAGGTATTGCAGGTAA 58.641 43.478 0.00 0.00 40.98 2.85
4919 5940 5.281314 AGGAATGAATGTACCAGTAGAGGT 58.719 41.667 0.00 0.00 45.72 3.85
4924 5945 5.529289 AGAGGAGGAATGAATGTACCAGTA 58.471 41.667 0.00 0.00 0.00 2.74
4926 5947 4.406972 TGAGAGGAGGAATGAATGTACCAG 59.593 45.833 0.00 0.00 0.00 4.00
4927 5948 4.361783 TGAGAGGAGGAATGAATGTACCA 58.638 43.478 0.00 0.00 0.00 3.25
4983 6007 0.096976 GACGATGTTGTTGCGGATGG 59.903 55.000 0.00 0.00 0.00 3.51
4989 6013 2.032799 TCCTTGTTGACGATGTTGTTGC 59.967 45.455 0.00 0.00 0.00 4.17
4992 6016 2.218603 GGTCCTTGTTGACGATGTTGT 58.781 47.619 0.00 0.00 36.07 3.32
4995 6019 1.056660 AGGGTCCTTGTTGACGATGT 58.943 50.000 0.00 0.00 36.07 3.06
5000 6024 3.558033 TGGTAAAAGGGTCCTTGTTGAC 58.442 45.455 2.65 0.00 36.26 3.18
5001 6025 3.955524 TGGTAAAAGGGTCCTTGTTGA 57.044 42.857 2.65 0.00 36.26 3.18
5016 6040 3.500448 TGTGGAGCATCTGTTTGGTAA 57.500 42.857 0.00 0.00 33.73 2.85
5043 6067 1.765314 ACTTATGGCGATGGAAGAGCT 59.235 47.619 0.00 0.00 0.00 4.09
5044 6068 2.139118 GACTTATGGCGATGGAAGAGC 58.861 52.381 0.00 0.00 0.00 4.09
5045 6069 2.398498 CGACTTATGGCGATGGAAGAG 58.602 52.381 0.00 0.00 0.00 2.85
5046 6070 1.538204 GCGACTTATGGCGATGGAAGA 60.538 52.381 8.25 0.00 0.00 2.87
5053 6077 1.153647 CACCTGCGACTTATGGCGA 60.154 57.895 8.25 0.00 30.86 5.54
5059 6083 2.453521 ACATAGGTCACCTGCGACTTA 58.546 47.619 6.61 0.00 36.12 2.24
5062 6086 1.536284 GCTACATAGGTCACCTGCGAC 60.536 57.143 6.61 0.00 34.61 5.19
5065 6089 2.678336 GTTTGCTACATAGGTCACCTGC 59.322 50.000 6.61 0.45 34.61 4.85
5136 6827 9.503427 GTAATGTTGCTCCATAAGTTAAATGTC 57.497 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.