Multiple sequence alignment - TraesCS6A01G088900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G088900 chr6A 100.000 1703 0 0 1655 3357 57669737 57668035 0.000000e+00 3145
1 TraesCS6A01G088900 chr6A 100.000 1288 0 0 1 1288 57671391 57670104 0.000000e+00 2379
2 TraesCS6A01G088900 chr6A 100.000 256 0 0 3634 3889 57667758 57667503 1.260000e-129 473
3 TraesCS6A01G088900 chrUn 90.432 1714 104 27 1655 3349 19481983 19483655 0.000000e+00 2202
4 TraesCS6A01G088900 chrUn 91.194 1022 52 16 273 1288 19480961 19481950 0.000000e+00 1354
5 TraesCS6A01G088900 chrUn 90.955 398 34 2 273 669 331003971 331003575 5.720000e-148 534
6 TraesCS6A01G088900 chrUn 90.955 398 34 2 273 669 358260781 358260385 5.720000e-148 534
7 TraesCS6A01G088900 chrUn 91.282 390 32 2 281 669 476319166 476319554 7.400000e-147 531
8 TraesCS6A01G088900 chrUn 96.875 256 7 1 3634 3889 19483706 19483960 9.990000e-116 427
9 TraesCS6A01G088900 chr6B 90.749 1589 101 22 1655 3229 93419031 93417475 0.000000e+00 2078
10 TraesCS6A01G088900 chr6B 93.333 690 25 7 606 1287 93419741 93419065 0.000000e+00 1000
11 TraesCS6A01G088900 chr6B 95.703 256 10 1 3634 3889 93417322 93417068 1.010000e-110 411
12 TraesCS6A01G088900 chr7B 91.457 398 32 2 273 669 640720371 640720767 2.640000e-151 545
13 TraesCS6A01G088900 chr7B 90.863 394 33 3 273 665 512352125 512351734 3.440000e-145 525
14 TraesCS6A01G088900 chr3D 91.206 398 33 2 273 669 380179910 380180306 1.230000e-149 540
15 TraesCS6A01G088900 chr5B 90.955 398 33 3 273 669 356369200 356369595 2.060000e-147 532
16 TraesCS6A01G088900 chr6D 90.476 399 33 5 273 669 452936559 452936164 4.450000e-144 521
17 TraesCS6A01G088900 chr2A 98.571 280 4 0 1 280 512684663 512684942 2.700000e-136 496
18 TraesCS6A01G088900 chr1A 97.917 288 2 4 1 286 121545894 121545609 2.700000e-136 496
19 TraesCS6A01G088900 chr1A 97.552 286 7 0 1 286 499490626 499490911 1.260000e-134 490
20 TraesCS6A01G088900 chr1A 97.232 289 5 3 1 289 125634717 125634432 1.620000e-133 486
21 TraesCS6A01G088900 chr7D 97.578 289 6 1 1 288 537781305 537781593 9.710000e-136 494
22 TraesCS6A01G088900 chr5A 98.233 283 4 1 1 282 527871783 527872065 9.710000e-136 494
23 TraesCS6A01G088900 chr3A 97.902 286 4 2 1 284 633035820 633036105 9.710000e-136 494
24 TraesCS6A01G088900 chr5D 96.587 293 7 3 1 293 324469999 324470288 2.100000e-132 483
25 TraesCS6A01G088900 chr2D 94.569 313 12 5 1 308 557985615 557985927 2.720000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G088900 chr6A 57667503 57671391 3888 True 1999.000000 3145 100.000000 1 3889 3 chr6A.!!$R1 3888
1 TraesCS6A01G088900 chrUn 19480961 19483960 2999 False 1327.666667 2202 92.833667 273 3889 3 chrUn.!!$F2 3616
2 TraesCS6A01G088900 chr6B 93417068 93419741 2673 True 1163.000000 2078 93.261667 606 3889 3 chr6B.!!$R1 3283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.0 12.58 0.00 42.62 4.44 F
85 86 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.0 12.58 0.00 42.62 4.83 F
568 569 0.036952 CAGAACTGACACCTCCGCAT 60.037 55.0 0.00 0.00 0.00 4.73 F
923 924 0.479589 AAATCCTCCTCCCACCCCAA 60.480 55.0 0.00 0.00 0.00 4.12 F
2600 2639 0.695347 CCTATCCAATCAGAGGGCCC 59.305 60.0 16.46 16.46 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1764 0.110486 ACCAACCATTTCAGCGAGGT 59.890 50.0 0.00 0.0 35.47 3.85 R
2071 2089 1.836999 ATACCTGGTTGACGCTGCCA 61.837 55.0 3.84 0.0 0.00 4.92 R
2168 2196 1.051812 ATGGGGATCCTTCTAGTGCG 58.948 55.0 12.58 0.0 0.00 5.34 R
2656 2695 0.178941 GATTACCTAGGAGGCCCCGA 60.179 60.0 17.98 0.0 39.63 5.14 R
3713 3764 1.278238 GAACGCGGGTGATTGACTAG 58.722 55.0 12.47 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.690460 AGGATTGGGTCTTGTTCATCAC 58.310 45.455 0.00 0.00 0.00 3.06
22 23 3.074390 AGGATTGGGTCTTGTTCATCACA 59.926 43.478 0.00 0.00 0.00 3.58
23 24 4.019174 GGATTGGGTCTTGTTCATCACAT 58.981 43.478 0.00 0.00 34.43 3.21
24 25 4.096984 GGATTGGGTCTTGTTCATCACATC 59.903 45.833 0.00 0.00 34.43 3.06
25 26 3.786368 TGGGTCTTGTTCATCACATCA 57.214 42.857 0.00 0.00 34.43 3.07
26 27 4.305539 TGGGTCTTGTTCATCACATCAT 57.694 40.909 0.00 0.00 34.43 2.45
27 28 4.665451 TGGGTCTTGTTCATCACATCATT 58.335 39.130 0.00 0.00 34.43 2.57
28 29 4.701651 TGGGTCTTGTTCATCACATCATTC 59.298 41.667 0.00 0.00 34.43 2.67
29 30 4.946157 GGGTCTTGTTCATCACATCATTCT 59.054 41.667 0.00 0.00 34.43 2.40
30 31 5.065731 GGGTCTTGTTCATCACATCATTCTC 59.934 44.000 0.00 0.00 34.43 2.87
31 32 5.065731 GGTCTTGTTCATCACATCATTCTCC 59.934 44.000 0.00 0.00 34.43 3.71
32 33 5.879223 GTCTTGTTCATCACATCATTCTCCT 59.121 40.000 0.00 0.00 34.43 3.69
33 34 7.044181 GTCTTGTTCATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 34.43 2.94
34 35 7.550551 GTCTTGTTCATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 34.43 2.69
35 36 8.270030 TCTTGTTCATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 34.43 1.73
36 37 7.797038 TGTTCATCACATCATTCTCCTAATG 57.203 36.000 0.00 0.00 0.00 1.90
37 38 7.567458 TGTTCATCACATCATTCTCCTAATGA 58.433 34.615 3.13 3.13 40.50 2.57
38 39 8.215736 TGTTCATCACATCATTCTCCTAATGAT 58.784 33.333 7.28 7.28 45.40 2.45
46 47 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
47 48 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
48 49 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
49 50 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
50 51 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
51 52 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
52 53 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
53 54 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
54 55 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
55 56 6.881065 CCTAATGATGTGATCCCGTTATCAAT 59.119 38.462 0.00 0.00 37.61 2.57
56 57 6.564709 AATGATGTGATCCCGTTATCAATG 57.435 37.500 0.00 0.00 37.61 2.82
57 58 5.289083 TGATGTGATCCCGTTATCAATGA 57.711 39.130 0.00 0.00 37.61 2.57
58 59 5.056480 TGATGTGATCCCGTTATCAATGAC 58.944 41.667 0.00 0.00 37.61 3.06
59 60 4.479786 TGTGATCCCGTTATCAATGACA 57.520 40.909 0.00 0.00 37.61 3.58
60 61 5.034852 TGTGATCCCGTTATCAATGACAT 57.965 39.130 0.00 0.00 37.61 3.06
61 62 5.056480 TGTGATCCCGTTATCAATGACATC 58.944 41.667 0.00 0.00 37.61 3.06
62 63 4.452455 GTGATCCCGTTATCAATGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
63 64 4.102367 TGATCCCGTTATCAATGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
64 65 4.495690 TCCCGTTATCAATGACATCCAA 57.504 40.909 0.00 0.00 0.00 3.53
65 66 5.047566 TCCCGTTATCAATGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
66 67 4.821260 TCCCGTTATCAATGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
77 78 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
78 79 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
79 80 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
80 81 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
81 82 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
82 83 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
83 84 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
84 85 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
85 86 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
86 87 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
87 88 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
88 89 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
89 90 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
90 91 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
91 92 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
92 93 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
93 94 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
94 95 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
95 96 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
96 97 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
97 98 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
98 99 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
99 100 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
100 101 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
101 102 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
102 103 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
103 104 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
104 105 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
105 106 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
106 107 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
107 108 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
108 109 4.679373 ACCATCTATTGATCAACGAGCT 57.321 40.909 11.07 0.00 0.00 4.09
109 110 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
110 111 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
111 112 5.303078 ACCATCTATTGATCAACGAGCTAGT 59.697 40.000 11.07 6.23 0.00 2.57
112 113 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
113 114 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
114 115 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
115 116 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
116 117 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
117 118 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
118 119 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
119 120 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
120 121 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
121 122 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
122 123 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
123 124 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
124 125 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
125 126 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
126 127 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
127 128 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
128 129 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
129 130 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
130 131 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
131 132 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
132 133 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
133 134 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
134 135 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
135 136 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
136 137 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
137 138 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
138 139 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
139 140 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
140 141 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
141 142 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
142 143 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
143 144 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
144 145 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
145 146 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
146 147 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
147 148 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
148 149 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
149 150 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
150 151 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
151 152 4.721776 AGGGACATGGTGTTGTCTATGTAT 59.278 41.667 0.00 0.00 44.39 2.29
152 153 5.057149 GGGACATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 44.39 2.24
153 154 5.057149 GGACATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 44.39 2.59
154 155 5.396324 GGACATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 44.39 3.41
155 156 5.428253 ACATGGTGTTGTCTATGTATCCAC 58.572 41.667 0.00 0.00 32.41 4.02
156 157 5.045942 ACATGGTGTTGTCTATGTATCCACA 60.046 40.000 0.00 0.00 39.52 4.17
157 158 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
158 159 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
159 160 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
160 161 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
161 162 5.874810 GTGTTGTCTATGTATCCACACATGT 59.125 40.000 0.00 0.00 39.46 3.21
162 163 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
163 164 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
164 165 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
165 166 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
166 167 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
167 168 7.505585 TGTCTATGTATCCACACATGTATCTGA 59.494 37.037 0.00 0.00 39.46 3.27
168 169 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
169 170 6.737720 ATGTATCCACACATGTATCTGAGT 57.262 37.500 0.00 0.00 37.74 3.41
170 171 6.544928 TGTATCCACACATGTATCTGAGTT 57.455 37.500 0.00 0.00 0.00 3.01
171 172 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
172 173 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
173 174 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
174 175 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
175 176 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
176 177 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
177 178 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
178 179 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
179 180 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
180 181 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
181 182 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
182 183 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
183 184 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
191 192 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
192 193 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
195 196 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
196 197 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41
197 198 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
206 207 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
207 208 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
324 325 7.675962 TTCAGTTACAAGCCACGTAAATATT 57.324 32.000 0.00 0.00 30.96 1.28
333 334 7.335924 ACAAGCCACGTAAATATTGACATTACT 59.664 33.333 3.80 0.00 0.00 2.24
394 395 1.550976 GTGTGTCCCTCTCCACTAAGG 59.449 57.143 0.00 0.00 39.47 2.69
421 422 3.339141 GAGACAAATCACCTCTTCACCC 58.661 50.000 0.00 0.00 0.00 4.61
429 430 0.832135 ACCTCTTCACCCGAGCTCAA 60.832 55.000 15.40 0.00 0.00 3.02
431 432 0.318441 CTCTTCACCCGAGCTCAACA 59.682 55.000 15.40 0.00 0.00 3.33
433 434 1.284982 CTTCACCCGAGCTCAACACG 61.285 60.000 15.40 0.00 0.00 4.49
437 438 2.357517 CCGAGCTCAACACGGCTT 60.358 61.111 15.40 0.00 45.62 4.35
440 441 1.016130 CGAGCTCAACACGGCTTCAT 61.016 55.000 15.40 0.00 39.05 2.57
443 444 1.291877 GCTCAACACGGCTTCATCGT 61.292 55.000 0.00 0.00 41.93 3.73
453 454 1.739466 GGCTTCATCGTTGATCAGCAA 59.261 47.619 17.55 0.00 37.42 3.91
479 480 1.804748 CGGACCTCCAAAGTAGTTTGC 59.195 52.381 16.26 3.76 41.64 3.68
480 481 2.160205 GGACCTCCAAAGTAGTTTGCC 58.840 52.381 16.26 8.74 41.64 4.52
497 498 1.150827 GCCTGAAGCAAAACCATTGC 58.849 50.000 5.06 5.06 45.22 3.56
516 517 1.128692 GCCGTTGAAAGAATCAGACCG 59.871 52.381 0.00 0.00 39.77 4.79
517 518 2.683968 CCGTTGAAAGAATCAGACCGA 58.316 47.619 0.00 0.00 39.77 4.69
562 563 1.341531 CGAACTCCAGAACTGACACCT 59.658 52.381 3.19 0.00 0.00 4.00
568 569 0.036952 CAGAACTGACACCTCCGCAT 60.037 55.000 0.00 0.00 0.00 4.73
575 576 0.525668 GACACCTCCGCATGACTACG 60.526 60.000 0.00 0.00 0.00 3.51
576 577 1.878522 CACCTCCGCATGACTACGC 60.879 63.158 0.00 0.00 0.00 4.42
623 624 1.133199 AGCCTCCATTCACAAACCCAA 60.133 47.619 0.00 0.00 0.00 4.12
633 634 3.625853 TCACAAACCCAACACAAGATGA 58.374 40.909 0.00 0.00 0.00 2.92
695 696 4.460948 AAACCGTATATGAGTGACCGTT 57.539 40.909 0.00 0.00 0.00 4.44
708 709 2.030562 CCGTTCACTTCCGTGGCT 59.969 61.111 0.00 0.00 41.53 4.75
755 756 6.550843 CGGTGAACAAAGTGAATATATGCAA 58.449 36.000 0.00 0.00 0.00 4.08
756 757 7.026562 CGGTGAACAAAGTGAATATATGCAAA 58.973 34.615 0.00 0.00 0.00 3.68
757 758 7.540400 CGGTGAACAAAGTGAATATATGCAAAA 59.460 33.333 0.00 0.00 0.00 2.44
758 759 9.202273 GGTGAACAAAGTGAATATATGCAAAAA 57.798 29.630 0.00 0.00 0.00 1.94
760 761 9.755804 TGAACAAAGTGAATATATGCAAAAACA 57.244 25.926 0.00 0.00 0.00 2.83
919 920 1.214992 ACCCAAATCCTCCTCCCACC 61.215 60.000 0.00 0.00 0.00 4.61
923 924 0.479589 AAATCCTCCTCCCACCCCAA 60.480 55.000 0.00 0.00 0.00 4.12
1699 1708 2.658707 GCACGAGTTCACGCAGGTC 61.659 63.158 0.00 0.00 36.70 3.85
1700 1709 2.022129 CACGAGTTCACGCAGGTCC 61.022 63.158 0.00 0.00 36.70 4.46
1701 1710 2.432628 CGAGTTCACGCAGGTCCC 60.433 66.667 0.00 0.00 0.00 4.46
1702 1711 2.047179 GAGTTCACGCAGGTCCCC 60.047 66.667 0.00 0.00 0.00 4.81
1703 1712 3.607370 GAGTTCACGCAGGTCCCCC 62.607 68.421 0.00 0.00 0.00 5.40
1964 1974 3.697439 TTGCAGAGCGTATGCCCCC 62.697 63.158 2.51 0.00 43.18 5.40
1966 1976 3.849951 CAGAGCGTATGCCCCCGT 61.850 66.667 2.51 0.00 44.31 5.28
1967 1977 3.081409 AGAGCGTATGCCCCCGTT 61.081 61.111 2.51 0.00 44.31 4.44
1968 1978 2.588034 GAGCGTATGCCCCCGTTC 60.588 66.667 2.51 0.00 44.31 3.95
1969 1979 3.379865 GAGCGTATGCCCCCGTTCA 62.380 63.158 2.51 0.00 44.31 3.18
1970 1980 2.203153 GCGTATGCCCCCGTTCAT 60.203 61.111 0.00 0.00 33.98 2.57
1971 1981 2.251642 GCGTATGCCCCCGTTCATC 61.252 63.158 0.00 0.00 33.98 2.92
2001 2019 3.144120 CTCAGTCTGATCGCCGGGG 62.144 68.421 13.31 13.31 0.00 5.73
2020 2038 2.483889 GGGATTTTCTCTCCAGGCTACG 60.484 54.545 0.00 0.00 34.24 3.51
2071 2089 0.849417 GGGAGAGGGCTTCCATTCAT 59.151 55.000 0.00 0.00 39.85 2.57
2116 2134 5.723672 TCCAGTAGTTGAGTTAGACCAAG 57.276 43.478 0.00 0.00 0.00 3.61
2117 2135 4.021368 TCCAGTAGTTGAGTTAGACCAAGC 60.021 45.833 0.00 0.00 0.00 4.01
2125 2150 6.152323 AGTTGAGTTAGACCAAGCGTATCTAA 59.848 38.462 2.65 2.65 33.55 2.10
2149 2174 3.581024 TCTGTTCAATTTCATGCCAGC 57.419 42.857 0.00 0.00 0.00 4.85
2168 2196 1.678269 CTGCTTAGCGTCGCACACTC 61.678 60.000 21.09 4.86 31.95 3.51
2191 2225 4.263068 CGCACTAGAAGGATCCCCATTTAT 60.263 45.833 8.55 0.00 33.88 1.40
2193 2230 6.352222 CGCACTAGAAGGATCCCCATTTATAT 60.352 42.308 8.55 0.00 33.88 0.86
2219 2256 6.845302 TGTGATGTTCATCATTAGTTCTTGC 58.155 36.000 16.75 3.21 36.83 4.01
2220 2257 6.656270 TGTGATGTTCATCATTAGTTCTTGCT 59.344 34.615 16.75 0.00 36.83 3.91
2241 2278 4.212425 GCTCATTCTGCATTCTCTGATCTG 59.788 45.833 0.00 0.00 0.00 2.90
2276 2313 7.423844 TCATTAATATCTGTGAGTGGTGTCT 57.576 36.000 0.00 0.00 0.00 3.41
2277 2314 7.492524 TCATTAATATCTGTGAGTGGTGTCTC 58.507 38.462 0.00 0.00 35.28 3.36
2301 2338 1.880819 GATGTGCAACTTGGGGCAGG 61.881 60.000 0.00 0.00 41.35 4.85
2307 2344 1.457455 AACTTGGGGCAGGGTGTTG 60.457 57.895 0.00 0.00 0.00 3.33
2312 2349 2.445155 GGGCAGGGTGTTGGGAAT 59.555 61.111 0.00 0.00 0.00 3.01
2313 2350 1.229177 GGGCAGGGTGTTGGGAATT 60.229 57.895 0.00 0.00 0.00 2.17
2336 2373 3.073062 ACACAGCAATAGGAAGAACAGGT 59.927 43.478 0.00 0.00 0.00 4.00
2364 2401 4.812626 AGGAACACTTACAAGTTACAACCG 59.187 41.667 0.00 0.00 37.08 4.44
2404 2441 3.250762 ACAGTGTGAACATTGAACGATGG 59.749 43.478 12.29 0.00 37.09 3.51
2417 2454 2.751166 ACGATGGTTTGAGTGGAGAG 57.249 50.000 0.00 0.00 0.00 3.20
2486 2525 8.075574 TGTCAATATGTGTTTGTCTTTGTGATC 58.924 33.333 0.00 0.00 0.00 2.92
2509 2548 3.843422 ACTCTAGCTCATGAGGCACTAT 58.157 45.455 23.89 3.86 41.55 2.12
2517 2556 3.378512 TCATGAGGCACTATGTTCCTCT 58.621 45.455 15.15 1.80 44.23 3.69
2518 2557 3.776969 TCATGAGGCACTATGTTCCTCTT 59.223 43.478 15.15 8.04 44.23 2.85
2519 2558 4.225942 TCATGAGGCACTATGTTCCTCTTT 59.774 41.667 15.15 3.34 44.23 2.52
2600 2639 0.695347 CCTATCCAATCAGAGGGCCC 59.305 60.000 16.46 16.46 0.00 5.80
2635 2674 4.431416 TCAGGGAAAAGTCAAGCAGTTA 57.569 40.909 0.00 0.00 0.00 2.24
2656 2695 3.653164 AGGTGAAAAATTCCCTGTGGTT 58.347 40.909 0.00 0.00 31.73 3.67
2659 2698 2.625790 TGAAAAATTCCCTGTGGTTCGG 59.374 45.455 0.00 0.00 0.00 4.30
2668 2707 2.686106 GTGGTTCGGGGCCTCCTA 60.686 66.667 0.84 0.00 0.00 2.94
2677 2716 1.353091 GGGGCCTCCTAGGTAATCTG 58.647 60.000 9.08 0.00 37.80 2.90
2685 2724 4.507691 CCTCCTAGGTAATCTGTCGATCCT 60.508 50.000 9.08 0.00 31.08 3.24
2686 2725 5.063017 TCCTAGGTAATCTGTCGATCCTT 57.937 43.478 9.08 0.00 29.45 3.36
2694 2733 8.487028 AGGTAATCTGTCGATCCTTAATTCTTT 58.513 33.333 0.00 0.00 0.00 2.52
2698 2737 8.600449 ATCTGTCGATCCTTAATTCTTTCATC 57.400 34.615 0.00 0.00 0.00 2.92
2713 2752 7.979444 TTCTTTCATCGGACATTAGTCTTTT 57.021 32.000 0.00 0.00 44.36 2.27
2714 2753 7.364522 TCTTTCATCGGACATTAGTCTTTTG 57.635 36.000 0.00 0.00 44.36 2.44
2719 2758 1.743394 GGACATTAGTCTTTTGGCGGG 59.257 52.381 0.00 0.00 44.36 6.13
2726 2765 0.101219 GTCTTTTGGCGGGCATCATC 59.899 55.000 4.64 0.00 0.00 2.92
2727 2766 1.064621 CTTTTGGCGGGCATCATCG 59.935 57.895 4.64 0.00 0.00 3.84
2728 2767 1.656818 CTTTTGGCGGGCATCATCGT 61.657 55.000 4.64 0.00 0.00 3.73
2729 2768 0.393132 TTTTGGCGGGCATCATCGTA 60.393 50.000 4.64 0.00 0.00 3.43
2730 2769 0.179032 TTTGGCGGGCATCATCGTAT 60.179 50.000 4.64 0.00 0.00 3.06
2731 2770 0.884259 TTGGCGGGCATCATCGTATG 60.884 55.000 4.64 0.00 0.00 2.39
2740 2779 3.300852 CATCATCGTATGCTCTCTGCT 57.699 47.619 0.00 0.00 43.37 4.24
2741 2780 4.431661 CATCATCGTATGCTCTCTGCTA 57.568 45.455 0.00 0.00 43.37 3.49
2744 2783 5.459536 TCATCGTATGCTCTCTGCTATTT 57.540 39.130 0.00 0.00 43.37 1.40
2745 2784 5.225642 TCATCGTATGCTCTCTGCTATTTG 58.774 41.667 0.00 0.00 43.37 2.32
2746 2785 4.918810 TCGTATGCTCTCTGCTATTTGA 57.081 40.909 0.00 0.00 43.37 2.69
2748 2787 3.738282 CGTATGCTCTCTGCTATTTGACC 59.262 47.826 0.00 0.00 43.37 4.02
2749 2788 2.698855 TGCTCTCTGCTATTTGACCC 57.301 50.000 0.00 0.00 43.37 4.46
2750 2789 1.134699 TGCTCTCTGCTATTTGACCCG 60.135 52.381 0.00 0.00 43.37 5.28
2751 2790 1.137086 GCTCTCTGCTATTTGACCCGA 59.863 52.381 0.00 0.00 38.95 5.14
2752 2791 2.224161 GCTCTCTGCTATTTGACCCGAT 60.224 50.000 0.00 0.00 38.95 4.18
2753 2792 3.742640 GCTCTCTGCTATTTGACCCGATT 60.743 47.826 0.00 0.00 38.95 3.34
2754 2793 4.054671 CTCTCTGCTATTTGACCCGATTC 58.945 47.826 0.00 0.00 0.00 2.52
2755 2794 3.134458 CTCTGCTATTTGACCCGATTCC 58.866 50.000 0.00 0.00 0.00 3.01
2756 2795 2.503765 TCTGCTATTTGACCCGATTCCA 59.496 45.455 0.00 0.00 0.00 3.53
2757 2796 2.874701 CTGCTATTTGACCCGATTCCAG 59.125 50.000 0.00 0.00 0.00 3.86
2759 2798 2.917933 CTATTTGACCCGATTCCAGCA 58.082 47.619 0.00 0.00 0.00 4.41
2761 2800 0.608035 TTTGACCCGATTCCAGCACC 60.608 55.000 0.00 0.00 0.00 5.01
2762 2801 2.124695 GACCCGATTCCAGCACCC 60.125 66.667 0.00 0.00 0.00 4.61
2767 2806 0.251916 CCGATTCCAGCACCCTAACA 59.748 55.000 0.00 0.00 0.00 2.41
2770 2809 2.614057 CGATTCCAGCACCCTAACAATC 59.386 50.000 0.00 0.00 0.00 2.67
2774 2813 2.238646 TCCAGCACCCTAACAATCGAAT 59.761 45.455 0.00 0.00 0.00 3.34
2894 2933 2.353889 CTGGCTCTCAAAATGATCGGTG 59.646 50.000 0.00 0.00 0.00 4.94
2898 2937 1.999735 TCTCAAAATGATCGGTGCGTC 59.000 47.619 0.00 0.00 0.00 5.19
2904 2943 2.126228 GATCGGTGCGTCGTTGGA 60.126 61.111 0.00 0.00 0.00 3.53
2964 3004 3.181462 TGACTGACAAGTGACTGCAGATT 60.181 43.478 23.35 6.57 36.52 2.40
3053 3093 0.320421 TGTTTAGCTCTCACCGTGCC 60.320 55.000 0.00 0.00 32.66 5.01
3074 3114 0.093026 CCGTCGACGCATCTTGTTTC 59.907 55.000 31.73 0.00 38.18 2.78
3083 3123 2.611292 CGCATCTTGTTTCTGGAGATCC 59.389 50.000 0.00 0.00 0.00 3.36
3126 3167 7.193377 AGATCAATTTTGTTTGGTGAATTGC 57.807 32.000 0.00 0.00 38.64 3.56
3127 3168 5.747951 TCAATTTTGTTTGGTGAATTGCC 57.252 34.783 0.00 0.00 38.64 4.52
3128 3169 4.578105 TCAATTTTGTTTGGTGAATTGCCC 59.422 37.500 0.00 0.00 38.64 5.36
3129 3170 3.634397 TTTTGTTTGGTGAATTGCCCA 57.366 38.095 0.00 0.00 0.00 5.36
3130 3171 2.611225 TTGTTTGGTGAATTGCCCAC 57.389 45.000 0.00 0.00 0.00 4.61
3131 3172 0.387202 TGTTTGGTGAATTGCCCACG 59.613 50.000 0.00 0.00 35.48 4.94
3132 3173 0.671251 GTTTGGTGAATTGCCCACGA 59.329 50.000 0.00 0.00 35.48 4.35
3133 3174 0.958091 TTTGGTGAATTGCCCACGAG 59.042 50.000 0.00 0.00 35.48 4.18
3134 3175 0.893270 TTGGTGAATTGCCCACGAGG 60.893 55.000 0.00 0.00 35.48 4.63
3147 3189 2.046023 CGAGGCCATGCTGGTTCA 60.046 61.111 5.01 0.00 40.46 3.18
3173 3215 7.548097 AGTAAATACGATGACACACTTCTGAT 58.452 34.615 0.00 0.00 0.00 2.90
3207 3249 1.188863 ATGGGAATTGAGCTGTTGCC 58.811 50.000 0.00 0.00 40.80 4.52
3220 3262 3.753272 AGCTGTTGCCTGTACAAATACTG 59.247 43.478 0.00 0.00 40.80 2.74
3246 3288 3.625314 TGGAACAAAACCCTTGCCT 57.375 47.368 0.00 0.00 31.92 4.75
3247 3289 1.118838 TGGAACAAAACCCTTGCCTG 58.881 50.000 0.00 0.00 31.92 4.85
3248 3290 1.119684 GGAACAAAACCCTTGCCTGT 58.880 50.000 0.00 0.00 0.00 4.00
3249 3291 2.312390 GGAACAAAACCCTTGCCTGTA 58.688 47.619 0.00 0.00 0.00 2.74
3250 3292 2.696187 GGAACAAAACCCTTGCCTGTAA 59.304 45.455 0.00 0.00 0.00 2.41
3251 3293 3.243737 GGAACAAAACCCTTGCCTGTAAG 60.244 47.826 0.00 0.00 0.00 2.34
3262 3304 2.778299 TGCCTGTAAGTGTGTTCCATC 58.222 47.619 0.00 0.00 0.00 3.51
3320 3371 3.336468 TGCAAATTCATTTCCATGTGCC 58.664 40.909 0.00 0.00 30.89 5.01
3324 3375 5.106078 GCAAATTCATTTCCATGTGCCAAAT 60.106 36.000 0.00 0.00 0.00 2.32
3356 3407 9.896645 AATGTCAATCTCAACATACTACATTCT 57.103 29.630 0.00 0.00 35.10 2.40
3675 3726 4.408921 TCAACAAGTACCAGGATCCCATAG 59.591 45.833 8.55 0.00 0.00 2.23
3806 3857 0.465705 TTTTCACCATTTTGGCGCCA 59.534 45.000 29.03 29.03 42.67 5.69
3882 3933 5.104193 GCCACATCCTATGATCTTATCCCAT 60.104 44.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.074390 TGTGATGAACAAGACCCAATCCT 59.926 43.478 0.00 0.00 35.24 3.24
1 2 3.420893 TGTGATGAACAAGACCCAATCC 58.579 45.455 0.00 0.00 35.24 3.01
2 3 4.701651 TGATGTGATGAACAAGACCCAATC 59.298 41.667 0.00 0.00 43.61 2.67
3 4 4.665451 TGATGTGATGAACAAGACCCAAT 58.335 39.130 0.00 0.00 43.61 3.16
4 5 4.097551 TGATGTGATGAACAAGACCCAA 57.902 40.909 0.00 0.00 43.61 4.12
5 6 3.786368 TGATGTGATGAACAAGACCCA 57.214 42.857 0.00 0.00 43.61 4.51
6 7 4.946157 AGAATGATGTGATGAACAAGACCC 59.054 41.667 0.00 0.00 43.61 4.46
7 8 5.065731 GGAGAATGATGTGATGAACAAGACC 59.934 44.000 0.00 0.00 43.61 3.85
8 9 5.879223 AGGAGAATGATGTGATGAACAAGAC 59.121 40.000 0.00 0.00 43.61 3.01
9 10 6.058553 AGGAGAATGATGTGATGAACAAGA 57.941 37.500 0.00 0.00 43.61 3.02
10 11 7.854557 TTAGGAGAATGATGTGATGAACAAG 57.145 36.000 0.00 0.00 43.61 3.16
11 12 8.048514 TCATTAGGAGAATGATGTGATGAACAA 58.951 33.333 0.00 0.00 43.61 2.83
12 13 7.567458 TCATTAGGAGAATGATGTGATGAACA 58.433 34.615 0.00 0.00 44.79 3.18
13 14 8.618702 ATCATTAGGAGAATGATGTGATGAAC 57.381 34.615 11.08 0.00 43.52 3.18
22 23 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
23 24 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
24 25 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
25 26 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
26 27 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
27 28 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
28 29 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
29 30 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
30 31 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
31 32 7.603784 TCATTGATAACGGGATCACATCATTAG 59.396 37.037 0.00 0.00 35.56 1.73
32 33 7.387673 GTCATTGATAACGGGATCACATCATTA 59.612 37.037 0.00 0.00 35.56 1.90
33 34 6.205464 GTCATTGATAACGGGATCACATCATT 59.795 38.462 0.00 0.00 35.56 2.57
34 35 5.702670 GTCATTGATAACGGGATCACATCAT 59.297 40.000 0.00 0.00 35.56 2.45
35 36 5.056480 GTCATTGATAACGGGATCACATCA 58.944 41.667 0.00 0.00 35.56 3.07
36 37 5.056480 TGTCATTGATAACGGGATCACATC 58.944 41.667 0.00 0.00 35.56 3.06
37 38 5.034852 TGTCATTGATAACGGGATCACAT 57.965 39.130 0.00 0.00 35.56 3.21
38 39 4.479786 TGTCATTGATAACGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
39 40 4.452455 GGATGTCATTGATAACGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
40 41 4.102367 TGGATGTCATTGATAACGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
41 42 4.641396 TGGATGTCATTGATAACGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
42 43 4.705110 TGGATGTCATTGATAACGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
43 44 4.495690 TTGGATGTCATTGATAACGGGA 57.504 40.909 0.00 0.00 0.00 5.14
44 45 4.580167 ACATTGGATGTCATTGATAACGGG 59.420 41.667 0.00 0.00 39.92 5.28
45 46 5.756195 ACATTGGATGTCATTGATAACGG 57.244 39.130 0.00 0.00 39.92 4.44
58 59 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
59 60 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
60 61 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
61 62 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
62 63 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
63 64 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
64 65 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
65 66 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
66 67 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
67 68 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
68 69 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
69 70 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
70 71 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
71 72 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
72 73 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
73 74 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
74 75 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
75 76 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
76 77 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
77 78 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
78 79 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
79 80 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
80 81 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
81 82 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
82 83 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
83 84 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
84 85 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
85 86 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
86 87 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
87 88 4.679373 AGCTCGTTGATCAATAGATGGT 57.321 40.909 19.51 14.02 33.72 3.55
88 89 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
89 90 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
90 91 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
91 92 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
92 93 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
93 94 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
94 95 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
95 96 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
96 97 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
97 98 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
98 99 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
99 100 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
100 101 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
101 102 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
102 103 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
103 104 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
104 105 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
105 106 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
106 107 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
107 108 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
108 109 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
109 110 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
110 111 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
111 112 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
112 113 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
113 114 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
114 115 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
115 116 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
116 117 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
117 118 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
118 119 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
119 120 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
120 121 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
121 122 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
122 123 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
123 124 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
129 130 8.319752 TGGATACATAGACAACACCATGTCCC 62.320 46.154 3.95 0.00 46.44 4.46
130 131 5.396324 TGGATACATAGACAACACCATGTCC 60.396 44.000 3.95 0.00 46.44 4.02
131 132 5.670485 TGGATACATAGACAACACCATGTC 58.330 41.667 0.00 0.00 45.97 3.06
132 133 5.692115 TGGATACATAGACAACACCATGT 57.308 39.130 0.00 0.00 46.17 3.21
148 149 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
149 150 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
150 151 5.190528 AGGAAACTCAGATACATGTGTGGAT 59.809 40.000 9.11 0.00 32.90 3.41
151 152 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
152 153 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
153 154 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
154 155 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
155 156 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
156 157 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
157 158 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
165 166 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
166 167 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
169 170 9.288576 CCATGCTAGAATTGTATTGATAGGAAA 57.711 33.333 0.00 0.00 0.00 3.13
170 171 8.659527 TCCATGCTAGAATTGTATTGATAGGAA 58.340 33.333 0.00 0.00 0.00 3.36
171 172 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
180 181 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
181 182 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
250 251 9.178758 GTATTTATTGGAAATATGCCCTAGAGG 57.821 37.037 0.00 0.00 39.47 3.69
251 252 9.739276 TGTATTTATTGGAAATATGCCCTAGAG 57.261 33.333 0.00 0.00 0.00 2.43
254 255 9.821240 ACATGTATTTATTGGAAATATGCCCTA 57.179 29.630 0.00 0.00 0.00 3.53
255 256 8.725606 ACATGTATTTATTGGAAATATGCCCT 57.274 30.769 0.00 0.00 0.00 5.19
256 257 8.806146 AGACATGTATTTATTGGAAATATGCCC 58.194 33.333 0.00 0.00 0.00 5.36
257 258 9.846248 GAGACATGTATTTATTGGAAATATGCC 57.154 33.333 0.00 0.00 0.00 4.40
298 299 6.569179 ATTTACGTGGCTTGTAACTGAATT 57.431 33.333 0.00 0.00 31.88 2.17
301 302 6.874664 TCAATATTTACGTGGCTTGTAACTGA 59.125 34.615 0.00 2.14 31.88 3.41
375 376 1.431633 TCCTTAGTGGAGAGGGACACA 59.568 52.381 0.00 0.00 40.56 3.72
394 395 5.765182 TGAAGAGGTGATTTGTCTCCTTTTC 59.235 40.000 16.55 16.55 41.19 2.29
406 407 0.250513 GCTCGGGTGAAGAGGTGATT 59.749 55.000 0.00 0.00 36.31 2.57
421 422 1.016130 ATGAAGCCGTGTTGAGCTCG 61.016 55.000 9.64 0.00 38.74 5.03
429 430 1.337728 TGATCAACGATGAAGCCGTGT 60.338 47.619 0.00 0.00 40.44 4.49
431 432 1.645034 CTGATCAACGATGAAGCCGT 58.355 50.000 0.00 0.00 39.49 5.68
433 434 1.372582 TGCTGATCAACGATGAAGCC 58.627 50.000 14.50 2.52 38.23 4.35
434 435 2.778659 GTTGCTGATCAACGATGAAGC 58.221 47.619 11.28 11.28 44.71 3.86
443 444 3.071479 GGTCCGTAAAGTTGCTGATCAA 58.929 45.455 0.00 0.00 0.00 2.57
453 454 3.899980 ACTACTTTGGAGGTCCGTAAAGT 59.100 43.478 18.64 18.64 41.87 2.66
479 480 1.799544 GGCAATGGTTTTGCTTCAGG 58.200 50.000 9.86 0.00 44.36 3.86
480 481 1.269726 ACGGCAATGGTTTTGCTTCAG 60.270 47.619 9.86 3.21 44.36 3.02
497 498 2.668457 CTCGGTCTGATTCTTTCAACGG 59.332 50.000 0.00 0.00 32.78 4.44
516 517 3.998672 TCCGGGGACACGTTGCTC 61.999 66.667 0.00 0.00 0.00 4.26
517 518 4.309950 GTCCGGGGACACGTTGCT 62.310 66.667 12.90 0.00 44.02 3.91
562 563 3.405592 GACGGCGTAGTCATGCGGA 62.406 63.158 14.74 0.00 38.85 5.54
568 569 3.129502 CCTCCGACGGCGTAGTCA 61.130 66.667 14.74 0.09 40.98 3.41
575 576 2.125633 GTTTCCTCCTCCGACGGC 60.126 66.667 9.66 0.00 0.00 5.68
576 577 2.227089 CTGGTTTCCTCCTCCGACGG 62.227 65.000 7.84 7.84 0.00 4.79
708 709 4.161377 GCCCTTCAAAATGCCCTAAATACA 59.839 41.667 0.00 0.00 0.00 2.29
773 774 4.481930 TCTTGTTGCGGTATTCACTTTG 57.518 40.909 0.00 0.00 0.00 2.77
846 847 0.322277 TTACGTGGAGAGCGGAGACT 60.322 55.000 0.00 0.00 0.00 3.24
1755 1764 0.110486 ACCAACCATTTCAGCGAGGT 59.890 50.000 0.00 0.00 35.47 3.85
1964 1974 2.394708 AGACGACACAACAGATGAACG 58.605 47.619 0.00 0.00 0.00 3.95
1965 1975 3.381045 TGAGACGACACAACAGATGAAC 58.619 45.455 0.00 0.00 0.00 3.18
1966 1976 3.068165 ACTGAGACGACACAACAGATGAA 59.932 43.478 0.00 0.00 33.53 2.57
1967 1977 2.623416 ACTGAGACGACACAACAGATGA 59.377 45.455 0.00 0.00 33.53 2.92
1968 1978 2.983136 GACTGAGACGACACAACAGATG 59.017 50.000 0.00 0.00 33.53 2.90
1969 1979 2.887783 AGACTGAGACGACACAACAGAT 59.112 45.455 0.00 0.00 33.53 2.90
1970 1980 2.033424 CAGACTGAGACGACACAACAGA 59.967 50.000 0.00 0.00 33.53 3.41
1971 1981 2.033424 TCAGACTGAGACGACACAACAG 59.967 50.000 0.00 0.00 35.14 3.16
2001 2019 2.483889 CCCGTAGCCTGGAGAGAAAATC 60.484 54.545 0.00 0.00 0.00 2.17
2071 2089 1.836999 ATACCTGGTTGACGCTGCCA 61.837 55.000 3.84 0.00 0.00 4.92
2116 2134 9.554724 TGAAATTGAACAGAATTTTAGATACGC 57.445 29.630 0.00 0.00 36.00 4.42
2125 2150 5.410439 GCTGGCATGAAATTGAACAGAATTT 59.590 36.000 0.00 0.00 38.07 1.82
2149 2174 1.678269 GAGTGTGCGACGCTAAGCAG 61.678 60.000 22.08 0.00 44.70 4.24
2168 2196 1.051812 ATGGGGATCCTTCTAGTGCG 58.948 55.000 12.58 0.00 0.00 5.34
2219 2256 5.602628 TCAGATCAGAGAATGCAGAATGAG 58.397 41.667 0.00 0.00 39.69 2.90
2220 2257 5.609533 TCAGATCAGAGAATGCAGAATGA 57.390 39.130 0.00 0.00 39.69 2.57
2241 2278 9.955208 TCACAGATATTAATGATTTTGTGCATC 57.045 29.630 0.00 0.00 35.79 3.91
2276 2313 1.887854 CCCAAGTTGCACATCACATGA 59.112 47.619 0.00 0.00 0.00 3.07
2277 2314 1.067425 CCCCAAGTTGCACATCACATG 60.067 52.381 0.00 0.00 0.00 3.21
2301 2338 2.235016 TGCTGTGTAATTCCCAACACC 58.765 47.619 6.73 0.00 44.29 4.16
2307 2344 5.437060 TCTTCCTATTGCTGTGTAATTCCC 58.563 41.667 0.00 0.00 0.00 3.97
2312 2349 5.221843 ACCTGTTCTTCCTATTGCTGTGTAA 60.222 40.000 0.00 0.00 0.00 2.41
2313 2350 4.286032 ACCTGTTCTTCCTATTGCTGTGTA 59.714 41.667 0.00 0.00 0.00 2.90
2336 2373 8.667463 GTTGTAACTTGTAAGTGTTCCTAACAA 58.333 33.333 0.00 0.00 44.16 2.83
2364 2401 9.037737 TCACACTGTTATTAGTACAGAAAACAC 57.962 33.333 9.74 0.00 44.52 3.32
2404 2441 4.608948 TTTCTCTCCTCTCCACTCAAAC 57.391 45.455 0.00 0.00 0.00 2.93
2417 2454 7.410485 CACAAAAGTAGACTTGTTTTCTCTCC 58.590 38.462 0.00 0.00 36.12 3.71
2486 2525 2.168106 AGTGCCTCATGAGCTAGAGTTG 59.832 50.000 17.76 2.14 0.00 3.16
2600 2639 3.423539 TCCCTGAACATCTCCAAACAG 57.576 47.619 0.00 0.00 0.00 3.16
2635 2674 3.328535 ACCACAGGGAATTTTTCACCT 57.671 42.857 0.00 0.00 38.05 4.00
2656 2695 0.178941 GATTACCTAGGAGGCCCCGA 60.179 60.000 17.98 0.00 39.63 5.14
2659 2698 1.972075 GACAGATTACCTAGGAGGCCC 59.028 57.143 17.98 0.22 39.63 5.80
2668 2707 7.604657 AGAATTAAGGATCGACAGATTACCT 57.395 36.000 0.00 0.00 37.19 3.08
2677 2716 5.983720 TCCGATGAAAGAATTAAGGATCGAC 59.016 40.000 0.00 0.00 34.55 4.20
2685 2724 9.667107 AAGACTAATGTCCGATGAAAGAATTAA 57.333 29.630 0.00 0.00 43.91 1.40
2686 2725 9.667107 AAAGACTAATGTCCGATGAAAGAATTA 57.333 29.630 0.00 0.00 43.91 1.40
2694 2733 3.938963 GCCAAAAGACTAATGTCCGATGA 59.061 43.478 0.00 0.00 43.91 2.92
2698 2737 1.396996 CCGCCAAAAGACTAATGTCCG 59.603 52.381 0.00 0.00 43.91 4.79
2713 2752 1.301637 CATACGATGATGCCCGCCA 60.302 57.895 0.00 0.00 0.00 5.69
2714 2753 2.680913 GCATACGATGATGCCCGCC 61.681 63.158 9.56 0.00 45.41 6.13
2731 2770 1.137086 TCGGGTCAAATAGCAGAGAGC 59.863 52.381 0.00 0.00 46.19 4.09
2732 2771 3.742433 ATCGGGTCAAATAGCAGAGAG 57.258 47.619 0.00 0.00 33.26 3.20
2733 2772 3.181465 GGAATCGGGTCAAATAGCAGAGA 60.181 47.826 0.00 0.00 33.26 3.10
2734 2773 3.134458 GGAATCGGGTCAAATAGCAGAG 58.866 50.000 0.00 0.00 33.26 3.35
2735 2774 2.503765 TGGAATCGGGTCAAATAGCAGA 59.496 45.455 0.00 0.00 34.27 4.26
2736 2775 2.874701 CTGGAATCGGGTCAAATAGCAG 59.125 50.000 0.00 0.00 0.00 4.24
2737 2776 2.917933 CTGGAATCGGGTCAAATAGCA 58.082 47.619 0.00 0.00 0.00 3.49
2738 2777 1.604278 GCTGGAATCGGGTCAAATAGC 59.396 52.381 0.00 0.00 0.00 2.97
2739 2778 2.614057 GTGCTGGAATCGGGTCAAATAG 59.386 50.000 0.00 0.00 0.00 1.73
2740 2779 2.639065 GTGCTGGAATCGGGTCAAATA 58.361 47.619 0.00 0.00 0.00 1.40
2741 2780 1.463674 GTGCTGGAATCGGGTCAAAT 58.536 50.000 0.00 0.00 0.00 2.32
2744 2783 2.668632 GGTGCTGGAATCGGGTCA 59.331 61.111 0.00 0.00 0.00 4.02
2745 2784 1.335132 TAGGGTGCTGGAATCGGGTC 61.335 60.000 0.00 0.00 0.00 4.46
2746 2785 0.912487 TTAGGGTGCTGGAATCGGGT 60.912 55.000 0.00 0.00 0.00 5.28
2748 2787 0.251916 TGTTAGGGTGCTGGAATCGG 59.748 55.000 0.00 0.00 0.00 4.18
2749 2788 2.107950 TTGTTAGGGTGCTGGAATCG 57.892 50.000 0.00 0.00 0.00 3.34
2750 2789 2.614057 CGATTGTTAGGGTGCTGGAATC 59.386 50.000 0.00 0.00 0.00 2.52
2751 2790 2.238646 TCGATTGTTAGGGTGCTGGAAT 59.761 45.455 0.00 0.00 0.00 3.01
2752 2791 1.626321 TCGATTGTTAGGGTGCTGGAA 59.374 47.619 0.00 0.00 0.00 3.53
2753 2792 1.271856 TCGATTGTTAGGGTGCTGGA 58.728 50.000 0.00 0.00 0.00 3.86
2754 2793 2.107950 TTCGATTGTTAGGGTGCTGG 57.892 50.000 0.00 0.00 0.00 4.85
2755 2794 4.188462 TGTATTCGATTGTTAGGGTGCTG 58.812 43.478 0.00 0.00 0.00 4.41
2756 2795 4.481368 TGTATTCGATTGTTAGGGTGCT 57.519 40.909 0.00 0.00 0.00 4.40
2757 2796 5.527582 AGAATGTATTCGATTGTTAGGGTGC 59.472 40.000 0.00 0.00 41.56 5.01
2759 2798 7.110155 ACAAGAATGTATTCGATTGTTAGGGT 58.890 34.615 6.47 0.00 41.56 4.34
2761 2800 9.277565 CAAACAAGAATGTATTCGATTGTTAGG 57.722 33.333 17.75 12.65 40.85 2.69
2762 2801 8.788813 GCAAACAAGAATGTATTCGATTGTTAG 58.211 33.333 17.75 2.97 40.85 2.34
2767 2806 6.324819 CCTGCAAACAAGAATGTATTCGATT 58.675 36.000 0.00 0.00 39.40 3.34
2770 2809 3.853671 GCCTGCAAACAAGAATGTATTCG 59.146 43.478 0.00 0.00 39.40 3.34
2774 2813 1.068610 GCGCCTGCAAACAAGAATGTA 60.069 47.619 0.00 0.00 39.08 2.29
2894 2933 1.154654 CGAGCTTTTCCAACGACGC 60.155 57.895 0.00 0.00 0.00 5.19
2898 2937 1.154654 GTCGCGAGCTTTTCCAACG 60.155 57.895 10.24 0.00 0.00 4.10
2904 2943 3.998672 TCCCCGTCGCGAGCTTTT 61.999 61.111 10.24 0.00 0.00 2.27
2964 3004 1.164411 CACCAGCCTTTTATCGTGCA 58.836 50.000 0.00 0.00 0.00 4.57
2977 3017 8.734386 CCTAAGAAATGGATAATAATCACCAGC 58.266 37.037 0.00 0.00 35.84 4.85
3053 3093 3.902063 CAAGATGCGTCGACGGCG 61.902 66.667 36.13 19.03 40.23 6.46
3057 3097 1.126846 CCAGAAACAAGATGCGTCGAC 59.873 52.381 5.18 5.18 0.00 4.20
3063 3103 2.948315 GGGATCTCCAGAAACAAGATGC 59.052 50.000 0.00 0.00 37.20 3.91
3064 3104 3.549794 GGGGATCTCCAGAAACAAGATG 58.450 50.000 6.79 0.00 37.91 2.90
3083 3123 5.785423 TGATCTAGGTATAAATGACAGGGGG 59.215 44.000 0.00 0.00 0.00 5.40
3136 3177 5.794687 TCGTATTTACTTGAACCAGCATG 57.205 39.130 0.00 0.00 0.00 4.06
3137 3178 6.037172 GTCATCGTATTTACTTGAACCAGCAT 59.963 38.462 0.00 0.00 0.00 3.79
3142 3183 6.367969 AGTGTGTCATCGTATTTACTTGAACC 59.632 38.462 0.00 0.00 0.00 3.62
3147 3189 7.375834 TCAGAAGTGTGTCATCGTATTTACTT 58.624 34.615 0.00 0.00 0.00 2.24
3237 3279 0.843984 ACACACTTACAGGCAAGGGT 59.156 50.000 0.00 0.00 42.97 4.34
3238 3280 1.880027 GAACACACTTACAGGCAAGGG 59.120 52.381 0.00 0.00 34.94 3.95
3241 3283 2.719531 TGGAACACACTTACAGGCAA 57.280 45.000 0.00 0.00 0.00 4.52
3262 3304 3.679389 ACAGCTCAACTCCCATTGTAAG 58.321 45.455 0.00 0.00 0.00 2.34
3713 3764 1.278238 GAACGCGGGTGATTGACTAG 58.722 55.000 12.47 0.00 0.00 2.57
3774 3825 7.977789 AAATGGTGAAAACTTGTCACTTTTT 57.022 28.000 11.22 8.69 44.02 1.94
3775 3826 7.094848 CCAAAATGGTGAAAACTTGTCACTTTT 60.095 33.333 11.22 8.49 44.02 2.27
3806 3857 3.339141 GGGATCGAGCTGTTTCTTCTTT 58.661 45.455 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.