Multiple sequence alignment - TraesCS6A01G088200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G088200 chr6A 100.000 7552 0 0 1 7552 56243423 56250974 0.000000e+00 13947.0
1 TraesCS6A01G088200 chr6A 85.106 282 23 10 5152 5429 604439772 604439506 3.470000e-68 270.0
2 TraesCS6A01G088200 chr6A 85.366 164 22 1 6132 6293 604438729 604438566 1.300000e-37 169.0
3 TraesCS6A01G088200 chr6A 88.506 87 6 2 7468 7550 74415531 74415445 1.340000e-17 102.0
4 TraesCS6A01G088200 chrUn 95.705 3283 94 15 2857 6136 20113489 20110251 0.000000e+00 5238.0
5 TraesCS6A01G088200 chrUn 91.966 2589 129 25 193 2754 20116017 20113481 0.000000e+00 3555.0
6 TraesCS6A01G088200 chrUn 95.581 1290 48 5 6132 7416 20110120 20108835 0.000000e+00 2058.0
7 TraesCS6A01G088200 chrUn 90.377 717 53 9 2572 3287 368795189 368794488 0.000000e+00 928.0
8 TraesCS6A01G088200 chrUn 90.377 717 53 9 2572 3287 467870564 467869863 0.000000e+00 928.0
9 TraesCS6A01G088200 chrUn 88.485 165 9 6 3569 3732 455427513 455427358 2.780000e-44 191.0
10 TraesCS6A01G088200 chrUn 89.024 82 5 2 7473 7550 119079356 119079437 1.730000e-16 99.0
11 TraesCS6A01G088200 chr6B 93.031 3171 114 52 846 3978 92749732 92752833 0.000000e+00 4532.0
12 TraesCS6A01G088200 chr6B 95.481 2058 52 15 4088 6136 92752831 92754856 0.000000e+00 3247.0
13 TraesCS6A01G088200 chr6B 91.268 1088 57 17 6132 7194 92754990 92756064 0.000000e+00 1448.0
14 TraesCS6A01G088200 chr6B 84.772 197 19 9 70 266 92747860 92748045 3.600000e-43 187.0
15 TraesCS6A01G088200 chr6B 92.174 115 7 1 7192 7306 92756096 92756208 2.180000e-35 161.0
16 TraesCS6A01G088200 chr6B 89.535 86 5 1 7469 7550 17866191 17866106 1.040000e-18 106.0
17 TraesCS6A01G088200 chr6B 91.250 80 3 1 7475 7550 208179049 208178970 1.040000e-18 106.0
18 TraesCS6A01G088200 chr6B 97.436 39 1 0 5536 5574 613110959 613110921 4.890000e-07 67.6
19 TraesCS6A01G088200 chr5B 90.653 995 73 13 2296 3287 699943573 699944550 0.000000e+00 1304.0
20 TraesCS6A01G088200 chr5B 90.443 994 78 12 2296 3287 700246824 700245846 0.000000e+00 1293.0
21 TraesCS6A01G088200 chr5B 90.443 994 78 10 2296 3287 700270813 700269835 0.000000e+00 1293.0
22 TraesCS6A01G088200 chr5B 90.580 276 25 1 2296 2570 704022700 704022975 1.550000e-96 364.0
23 TraesCS6A01G088200 chr5B 89.697 165 7 6 3569 3732 700244413 700244568 1.280000e-47 202.0
24 TraesCS6A01G088200 chr5B 89.697 165 7 6 3569 3732 700268398 700268553 1.280000e-47 202.0
25 TraesCS6A01G088200 chr5B 83.590 195 13 4 7309 7485 179924891 179925084 1.690000e-36 165.0
26 TraesCS6A01G088200 chr4A 90.060 996 70 18 2296 3287 616678095 616677125 0.000000e+00 1264.0
27 TraesCS6A01G088200 chr4A 83.069 567 64 14 3950 4506 616676312 616675768 3.170000e-133 486.0
28 TraesCS6A01G088200 chr4A 89.759 166 6 7 3569 3732 616676320 616676476 1.280000e-47 202.0
29 TraesCS6A01G088200 chr4A 85.030 167 24 1 7309 7475 705693827 705693992 1.300000e-37 169.0
30 TraesCS6A01G088200 chr5D 89.605 885 68 10 2296 3172 552045622 552044754 0.000000e+00 1103.0
31 TraesCS6A01G088200 chr5D 96.454 141 5 0 3147 3287 552044138 552043998 4.560000e-57 233.0
32 TraesCS6A01G088200 chr2D 88.802 643 47 12 4505 5138 606103343 606103969 0.000000e+00 765.0
33 TraesCS6A01G088200 chr2D 88.474 642 47 13 4509 5138 588505816 588506442 0.000000e+00 750.0
34 TraesCS6A01G088200 chr2D 87.992 508 32 7 1786 2292 588505319 588505798 2.360000e-159 573.0
35 TraesCS6A01G088200 chr2D 89.347 291 21 7 5144 5428 606104137 606104423 2.590000e-94 357.0
36 TraesCS6A01G088200 chr2D 82.096 458 40 16 5654 6087 588511746 588512185 3.350000e-93 353.0
37 TraesCS6A01G088200 chr2D 88.514 296 25 6 5137 5428 588506593 588506883 4.340000e-92 350.0
38 TraesCS6A01G088200 chr2D 93.631 157 8 2 1786 1941 606103057 606103212 4.560000e-57 233.0
39 TraesCS6A01G088200 chr2D 92.547 161 12 0 3291 3451 526525119 526524959 1.640000e-56 231.0
40 TraesCS6A01G088200 chr2D 86.667 210 23 4 5876 6084 606104801 606105006 2.120000e-55 228.0
41 TraesCS6A01G088200 chr2D 91.463 164 12 2 3291 3452 480163320 480163157 2.740000e-54 224.0
42 TraesCS6A01G088200 chr2D 89.080 174 17 1 6133 6304 588512364 588512537 1.650000e-51 215.0
43 TraesCS6A01G088200 chr2D 89.941 169 11 3 3287 3454 532176715 532176552 5.940000e-51 213.0
44 TraesCS6A01G088200 chr2D 88.623 167 18 1 7309 7475 517751187 517751352 1.280000e-47 202.0
45 TraesCS6A01G088200 chr2D 95.745 47 0 2 581 625 475920526 475920480 2.920000e-09 75.0
46 TraesCS6A01G088200 chr2A 88.665 644 43 14 4509 5138 723108895 723109522 0.000000e+00 758.0
47 TraesCS6A01G088200 chr2A 87.426 509 33 9 1786 2292 723108398 723108877 2.380000e-154 556.0
48 TraesCS6A01G088200 chr2A 89.116 294 26 4 5137 5427 723109673 723109963 2.000000e-95 361.0
49 TraesCS6A01G088200 chr2A 81.466 464 40 23 5654 6087 748800578 748801025 9.390000e-89 339.0
50 TraesCS6A01G088200 chr2A 81.223 458 44 16 5654 6087 723110099 723110538 1.570000e-86 331.0
51 TraesCS6A01G088200 chr2A 85.784 204 23 4 6132 6331 748801203 748801404 2.130000e-50 211.0
52 TraesCS6A01G088200 chr3B 88.025 643 51 15 4509 5138 43709276 43709905 0.000000e+00 737.0
53 TraesCS6A01G088200 chr3B 89.398 349 23 4 1786 2133 43708814 43709149 1.950000e-115 427.0
54 TraesCS6A01G088200 chr3B 89.562 297 23 5 5137 5428 43710056 43710349 3.330000e-98 370.0
55 TraesCS6A01G088200 chr3B 80.819 464 34 24 5654 6087 43710483 43710921 5.690000e-81 313.0
56 TraesCS6A01G088200 chr3B 91.358 162 14 0 3291 3452 428703821 428703660 9.860000e-54 222.0
57 TraesCS6A01G088200 chr3B 86.517 178 18 4 6132 6304 43711091 43711267 2.780000e-44 191.0
58 TraesCS6A01G088200 chr3B 81.875 160 21 2 7311 7470 86575310 86575159 2.210000e-25 128.0
59 TraesCS6A01G088200 chr3B 87.342 79 3 1 2160 2231 43709146 43709224 4.860000e-12 84.2
60 TraesCS6A01G088200 chr1B 83.784 518 42 21 5654 6139 641510325 641509818 3.210000e-123 453.0
61 TraesCS6A01G088200 chr1B 74.227 388 61 21 3962 4345 614185034 614184682 7.960000e-25 126.0
62 TraesCS6A01G088200 chr1B 92.500 80 2 1 7475 7550 411862573 411862494 2.230000e-20 111.0
63 TraesCS6A01G088200 chr6D 82.988 482 56 15 5654 6119 457548104 457547633 5.450000e-111 412.0
64 TraesCS6A01G088200 chr6D 83.630 281 27 10 5153 5429 457548504 457548239 5.850000e-61 246.0
65 TraesCS6A01G088200 chr6D 92.105 76 2 1 7476 7547 273178730 273178805 3.730000e-18 104.0
66 TraesCS6A01G088200 chr6D 96.078 51 2 0 2 52 36778319 36778369 4.860000e-12 84.2
67 TraesCS6A01G088200 chr6D 97.500 40 1 0 5538 5577 6833122 6833161 1.360000e-07 69.4
68 TraesCS6A01G088200 chr6D 100.000 37 0 0 5537 5573 211443988 211444024 1.360000e-07 69.4
69 TraesCS6A01G088200 chr1A 83.047 466 39 15 5704 6139 557093739 557093284 3.310000e-103 387.0
70 TraesCS6A01G088200 chr1A 80.541 185 17 3 7309 7475 477197987 477197804 2.860000e-24 124.0
71 TraesCS6A01G088200 chr2B 90.345 290 20 5 5137 5421 754534993 754535279 2.570000e-99 374.0
72 TraesCS6A01G088200 chr2B 90.854 164 13 1 3291 3452 769078167 769078004 1.280000e-52 219.0
73 TraesCS6A01G088200 chr2B 86.111 180 23 1 6132 6309 754536517 754536696 7.730000e-45 193.0
74 TraesCS6A01G088200 chr2B 86.228 167 22 1 7309 7475 188526554 188526719 6.020000e-41 180.0
75 TraesCS6A01G088200 chr2B 85.030 167 24 1 7309 7475 726597162 726596997 1.300000e-37 169.0
76 TraesCS6A01G088200 chr2B 89.024 82 5 1 7475 7552 90002535 90002616 1.730000e-16 99.0
77 TraesCS6A01G088200 chr5A 93.252 163 9 2 3291 3452 467400019 467400180 9.790000e-59 239.0
78 TraesCS6A01G088200 chr5A 97.500 40 1 0 1 40 638822100 638822061 1.360000e-07 69.4
79 TraesCS6A01G088200 chr5A 100.000 28 0 0 2296 2323 10034727 10034754 1.400000e-02 52.8
80 TraesCS6A01G088200 chr7A 90.419 167 13 3 3291 3454 580506704 580506870 4.590000e-52 217.0
81 TraesCS6A01G088200 chr7A 84.393 173 23 2 7306 7475 498319855 498320026 4.690000e-37 167.0
82 TraesCS6A01G088200 chr7A 97.436 39 1 0 5537 5575 275961061 275961099 4.890000e-07 67.6
83 TraesCS6A01G088200 chr3D 88.024 167 16 4 7309 7475 521328678 521328516 2.150000e-45 195.0
84 TraesCS6A01G088200 chr3D 83.957 187 9 11 7309 7477 481230645 481230462 7.840000e-35 159.0
85 TraesCS6A01G088200 chr7B 75.381 394 64 19 3962 4345 730141003 730140633 7.840000e-35 159.0
86 TraesCS6A01G088200 chr4D 83.152 184 12 10 7309 7474 63413339 63413157 4.720000e-32 150.0
87 TraesCS6A01G088200 chr4B 88.421 95 6 3 7460 7550 805203 805110 8.010000e-20 110.0
88 TraesCS6A01G088200 chr4B 90.244 82 4 1 7475 7552 25264368 25264449 3.730000e-18 104.0
89 TraesCS6A01G088200 chr4B 98.000 50 1 0 2 51 659581711 659581662 3.750000e-13 87.9
90 TraesCS6A01G088200 chr1D 94.643 56 3 0 2 57 415591243 415591298 3.750000e-13 87.9
91 TraesCS6A01G088200 chr1D 95.122 41 2 0 5534 5574 149649757 149649797 1.760000e-06 65.8
92 TraesCS6A01G088200 chr1D 91.304 46 3 1 5526 5570 295968777 295968822 2.280000e-05 62.1
93 TraesCS6A01G088200 chr7D 100.000 37 0 0 5537 5573 141356384 141356420 1.360000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G088200 chr6A 56243423 56250974 7551 False 13947.000000 13947 100.000000 1 7552 1 chr6A.!!$F1 7551
1 TraesCS6A01G088200 chr6A 604438566 604439772 1206 True 219.500000 270 85.236000 5152 6293 2 chr6A.!!$R2 1141
2 TraesCS6A01G088200 chrUn 20108835 20116017 7182 True 3617.000000 5238 94.417333 193 7416 3 chrUn.!!$R4 7223
3 TraesCS6A01G088200 chrUn 368794488 368795189 701 True 928.000000 928 90.377000 2572 3287 1 chrUn.!!$R1 715
4 TraesCS6A01G088200 chrUn 467869863 467870564 701 True 928.000000 928 90.377000 2572 3287 1 chrUn.!!$R3 715
5 TraesCS6A01G088200 chr6B 92747860 92756208 8348 False 1915.000000 4532 91.345200 70 7306 5 chr6B.!!$F1 7236
6 TraesCS6A01G088200 chr5B 699943573 699944550 977 False 1304.000000 1304 90.653000 2296 3287 1 chr5B.!!$F2 991
7 TraesCS6A01G088200 chr5B 700245846 700246824 978 True 1293.000000 1293 90.443000 2296 3287 1 chr5B.!!$R1 991
8 TraesCS6A01G088200 chr5B 700269835 700270813 978 True 1293.000000 1293 90.443000 2296 3287 1 chr5B.!!$R2 991
9 TraesCS6A01G088200 chr4A 616675768 616678095 2327 True 875.000000 1264 86.564500 2296 4506 2 chr4A.!!$R1 2210
10 TraesCS6A01G088200 chr5D 552043998 552045622 1624 True 668.000000 1103 93.029500 2296 3287 2 chr5D.!!$R1 991
11 TraesCS6A01G088200 chr2D 588505319 588506883 1564 False 557.666667 750 88.326667 1786 5428 3 chr2D.!!$F2 3642
12 TraesCS6A01G088200 chr2D 606103057 606105006 1949 False 395.750000 765 89.611750 1786 6084 4 chr2D.!!$F4 4298
13 TraesCS6A01G088200 chr2D 588511746 588512537 791 False 284.000000 353 85.588000 5654 6304 2 chr2D.!!$F3 650
14 TraesCS6A01G088200 chr2A 723108398 723110538 2140 False 501.500000 758 86.607500 1786 6087 4 chr2A.!!$F1 4301
15 TraesCS6A01G088200 chr2A 748800578 748801404 826 False 275.000000 339 83.625000 5654 6331 2 chr2A.!!$F2 677
16 TraesCS6A01G088200 chr3B 43708814 43711267 2453 False 353.700000 737 86.943833 1786 6304 6 chr3B.!!$F1 4518
17 TraesCS6A01G088200 chr1B 641509818 641510325 507 True 453.000000 453 83.784000 5654 6139 1 chr1B.!!$R3 485
18 TraesCS6A01G088200 chr6D 457547633 457548504 871 True 329.000000 412 83.309000 5153 6119 2 chr6D.!!$R1 966
19 TraesCS6A01G088200 chr2B 754534993 754536696 1703 False 283.500000 374 88.228000 5137 6309 2 chr2B.!!$F3 1172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.030101 CCATCGTTGCCAAACACGTT 59.970 50.000 0.00 0.0 35.94 3.99 F
1302 2750 0.168788 GCAGCTTGATTGTTAGCGCA 59.831 50.000 11.47 0.0 42.18 6.09 F
1655 3106 0.610687 GTGTCCTCCTCCTGGTTCTG 59.389 60.000 0.00 0.0 34.23 3.02 F
2252 3736 3.432378 ACTGTGTAACCAAACCAAACCA 58.568 40.909 0.00 0.0 34.36 3.67 F
3603 5756 0.188587 TGAGGGAGGTGTCACAGACT 59.811 55.000 5.12 0.0 33.15 3.24 F
3866 6019 0.390603 CAACCCGATGCTTGGTACGA 60.391 55.000 0.00 0.0 33.52 3.43 F
4414 6885 1.099689 AAACGTGAAGTGGGGTTGTG 58.900 50.000 0.00 0.0 0.00 3.33 F
4738 7221 4.210120 GGTCGTGAATCTATAGCTGCAAAG 59.790 45.833 1.02 0.0 0.00 2.77 F
4942 7430 4.699637 TCGTTCCATAACTGTGTCTTTGT 58.300 39.130 0.00 0.0 33.15 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 2758 0.036388 CCAAGCTGACCATACACGGT 60.036 55.000 0.00 0.00 43.91 4.83 R
2696 4190 0.250901 TGTTTGGAGAAGCTGAGGGC 60.251 55.000 0.00 0.00 42.19 5.19 R
2902 4401 1.839191 GTGATGAGGCCCCTATGCA 59.161 57.895 0.00 0.00 0.00 3.96 R
4179 6649 0.041238 CACTACCTCCTCCACCTCCA 59.959 60.000 0.00 0.00 0.00 3.86 R
4414 6885 1.592669 CATCCGACGCATGGGAGAC 60.593 63.158 17.76 6.54 35.96 3.36 R
4942 7430 2.354103 CCGGCTTCACAGATCAAAGAGA 60.354 50.000 0.00 0.00 0.00 3.10 R
6220 9580 0.687920 TGGGCTGAAACGGTGATGTA 59.312 50.000 0.00 0.00 0.00 2.29 R
6338 9701 1.340248 AGAAGGTTCGCGACTGAAAGA 59.660 47.619 9.15 0.00 37.43 2.52 R
6587 9952 2.044946 GCATGAAACGAGGGCCCT 60.045 61.111 29.18 29.18 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.593956 ACAAACTCCCATCTCTGAATTCC 58.406 43.478 2.27 0.00 0.00 3.01
23 24 3.941704 AACTCCCATCTCTGAATTCCC 57.058 47.619 2.27 0.00 0.00 3.97
24 25 2.850833 ACTCCCATCTCTGAATTCCCA 58.149 47.619 2.27 0.00 0.00 4.37
25 26 3.401385 ACTCCCATCTCTGAATTCCCAT 58.599 45.455 2.27 0.00 0.00 4.00
26 27 3.790408 ACTCCCATCTCTGAATTCCCATT 59.210 43.478 2.27 0.00 0.00 3.16
27 28 4.141298 ACTCCCATCTCTGAATTCCCATTC 60.141 45.833 2.27 0.00 39.58 2.67
28 29 3.139025 TCCCATCTCTGAATTCCCATTCC 59.861 47.826 2.27 0.00 38.50 3.01
29 30 3.494332 CCATCTCTGAATTCCCATTCCC 58.506 50.000 2.27 0.00 38.50 3.97
30 31 3.139770 CCATCTCTGAATTCCCATTCCCT 59.860 47.826 2.27 0.00 38.50 4.20
31 32 4.396522 CATCTCTGAATTCCCATTCCCTC 58.603 47.826 2.27 0.00 38.50 4.30
32 33 3.740780 TCTCTGAATTCCCATTCCCTCT 58.259 45.455 2.27 0.00 38.50 3.69
33 34 3.713764 TCTCTGAATTCCCATTCCCTCTC 59.286 47.826 2.27 0.00 38.50 3.20
34 35 2.780010 TCTGAATTCCCATTCCCTCTCC 59.220 50.000 2.27 0.00 38.50 3.71
35 36 1.852965 TGAATTCCCATTCCCTCTCCC 59.147 52.381 2.27 0.00 38.50 4.30
36 37 1.145945 GAATTCCCATTCCCTCTCCCC 59.854 57.143 0.00 0.00 33.74 4.81
37 38 0.047802 ATTCCCATTCCCTCTCCCCA 59.952 55.000 0.00 0.00 0.00 4.96
38 39 0.047802 TTCCCATTCCCTCTCCCCAT 59.952 55.000 0.00 0.00 0.00 4.00
39 40 0.401979 TCCCATTCCCTCTCCCCATC 60.402 60.000 0.00 0.00 0.00 3.51
40 41 1.757306 CCATTCCCTCTCCCCATCG 59.243 63.158 0.00 0.00 0.00 3.84
41 42 1.056700 CCATTCCCTCTCCCCATCGT 61.057 60.000 0.00 0.00 0.00 3.73
42 43 0.839946 CATTCCCTCTCCCCATCGTT 59.160 55.000 0.00 0.00 0.00 3.85
43 44 0.839946 ATTCCCTCTCCCCATCGTTG 59.160 55.000 0.00 0.00 0.00 4.10
44 45 1.910580 TTCCCTCTCCCCATCGTTGC 61.911 60.000 0.00 0.00 0.00 4.17
45 46 2.190578 CCTCTCCCCATCGTTGCC 59.809 66.667 0.00 0.00 0.00 4.52
46 47 2.669133 CCTCTCCCCATCGTTGCCA 61.669 63.158 0.00 0.00 0.00 4.92
47 48 1.299648 CTCTCCCCATCGTTGCCAA 59.700 57.895 0.00 0.00 0.00 4.52
48 49 0.322456 CTCTCCCCATCGTTGCCAAA 60.322 55.000 0.00 0.00 0.00 3.28
49 50 0.608035 TCTCCCCATCGTTGCCAAAC 60.608 55.000 0.00 0.00 0.00 2.93
50 51 0.893270 CTCCCCATCGTTGCCAAACA 60.893 55.000 0.00 0.00 35.94 2.83
51 52 1.175983 TCCCCATCGTTGCCAAACAC 61.176 55.000 0.00 0.00 35.94 3.32
52 53 1.081509 CCCATCGTTGCCAAACACG 60.082 57.895 0.00 0.00 35.94 4.49
53 54 1.652012 CCATCGTTGCCAAACACGT 59.348 52.632 0.00 0.00 35.94 4.49
54 55 0.030101 CCATCGTTGCCAAACACGTT 59.970 50.000 0.00 0.00 35.94 3.99
55 56 1.119635 CATCGTTGCCAAACACGTTG 58.880 50.000 0.00 0.00 35.94 4.10
68 69 6.267500 CAAACACGTTGGGAAAATTACTTG 57.733 37.500 0.00 0.00 33.18 3.16
82 83 9.801873 GGAAAATTACTTGTAATGTGCATGTAT 57.198 29.630 6.76 0.00 0.00 2.29
159 177 4.271049 TGTTGTTGTTGTTGTTGTTGTTGG 59.729 37.500 0.00 0.00 0.00 3.77
160 178 4.060038 TGTTGTTGTTGTTGTTGTTGGT 57.940 36.364 0.00 0.00 0.00 3.67
161 179 3.804325 TGTTGTTGTTGTTGTTGTTGGTG 59.196 39.130 0.00 0.00 0.00 4.17
162 180 3.032017 TGTTGTTGTTGTTGTTGGTGG 57.968 42.857 0.00 0.00 0.00 4.61
163 181 2.365617 TGTTGTTGTTGTTGTTGGTGGT 59.634 40.909 0.00 0.00 0.00 4.16
164 182 2.732412 TGTTGTTGTTGTTGGTGGTG 57.268 45.000 0.00 0.00 0.00 4.17
165 183 1.273606 TGTTGTTGTTGTTGGTGGTGG 59.726 47.619 0.00 0.00 0.00 4.61
166 184 1.273886 GTTGTTGTTGTTGGTGGTGGT 59.726 47.619 0.00 0.00 0.00 4.16
167 185 0.891373 TGTTGTTGTTGGTGGTGGTG 59.109 50.000 0.00 0.00 0.00 4.17
168 186 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
169 187 0.251832 TTGTTGTTGGTGGTGGTGGT 60.252 50.000 0.00 0.00 0.00 4.16
170 188 0.967887 TGTTGTTGGTGGTGGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
171 189 1.380515 TTGTTGGTGGTGGTGGTGG 60.381 57.895 0.00 0.00 0.00 4.61
172 190 2.156496 TTGTTGGTGGTGGTGGTGGT 62.156 55.000 0.00 0.00 0.00 4.16
173 191 2.124693 GTTGGTGGTGGTGGTGGTG 61.125 63.158 0.00 0.00 0.00 4.17
174 192 2.617453 TTGGTGGTGGTGGTGGTGT 61.617 57.895 0.00 0.00 0.00 4.16
175 193 2.156496 TTGGTGGTGGTGGTGGTGTT 62.156 55.000 0.00 0.00 0.00 3.32
176 194 1.826487 GGTGGTGGTGGTGGTGTTC 60.826 63.158 0.00 0.00 0.00 3.18
177 195 1.226262 GTGGTGGTGGTGGTGTTCT 59.774 57.895 0.00 0.00 0.00 3.01
178 196 0.470766 GTGGTGGTGGTGGTGTTCTA 59.529 55.000 0.00 0.00 0.00 2.10
179 197 1.134037 GTGGTGGTGGTGGTGTTCTAA 60.134 52.381 0.00 0.00 0.00 2.10
180 198 1.777878 TGGTGGTGGTGGTGTTCTAAT 59.222 47.619 0.00 0.00 0.00 1.73
181 199 2.175931 TGGTGGTGGTGGTGTTCTAATT 59.824 45.455 0.00 0.00 0.00 1.40
182 200 3.394940 TGGTGGTGGTGGTGTTCTAATTA 59.605 43.478 0.00 0.00 0.00 1.40
183 201 4.043561 TGGTGGTGGTGGTGTTCTAATTAT 59.956 41.667 0.00 0.00 0.00 1.28
184 202 5.014202 GGTGGTGGTGGTGTTCTAATTATT 58.986 41.667 0.00 0.00 0.00 1.40
185 203 6.181908 GGTGGTGGTGGTGTTCTAATTATTA 58.818 40.000 0.00 0.00 0.00 0.98
188 206 9.398538 GTGGTGGTGGTGTTCTAATTATTATTA 57.601 33.333 0.00 0.00 0.00 0.98
254 272 9.586435 AAAAGAAAACAAATCACTTAACCAGAG 57.414 29.630 0.00 0.00 0.00 3.35
288 306 6.129393 CCGATAAAATGTTTGCTATGTCTCG 58.871 40.000 0.00 0.00 0.00 4.04
292 310 8.942338 ATAAAATGTTTGCTATGTCTCGTAGA 57.058 30.769 0.85 0.00 0.00 2.59
293 311 6.648725 AAATGTTTGCTATGTCTCGTAGAC 57.351 37.500 7.74 7.74 45.26 2.59
551 572 4.345859 AGACGTAGGGACATTGTTTTCA 57.654 40.909 0.00 0.00 0.00 2.69
557 578 3.233507 AGGGACATTGTTTTCAGCACAT 58.766 40.909 0.00 0.00 0.00 3.21
598 619 5.572896 GCTTTTTATTACCAGTGACACATGC 59.427 40.000 8.59 0.00 0.00 4.06
629 650 6.584056 CAATCCAAAGAATTCAAAAAGACGC 58.416 36.000 8.44 0.00 0.00 5.19
649 670 4.876107 ACGCAGGGAGTAGAAAATATTGTG 59.124 41.667 0.00 0.00 0.00 3.33
736 757 6.876789 TCTTGACATTTAAAGAAGCATACCGA 59.123 34.615 0.00 0.00 29.59 4.69
740 761 6.170506 ACATTTAAAGAAGCATACCGACAGA 58.829 36.000 0.00 0.00 0.00 3.41
741 762 6.653320 ACATTTAAAGAAGCATACCGACAGAA 59.347 34.615 0.00 0.00 0.00 3.02
742 763 7.174253 ACATTTAAAGAAGCATACCGACAGAAA 59.826 33.333 0.00 0.00 0.00 2.52
743 764 7.499321 TTTAAAGAAGCATACCGACAGAAAA 57.501 32.000 0.00 0.00 0.00 2.29
744 765 7.499321 TTAAAGAAGCATACCGACAGAAAAA 57.501 32.000 0.00 0.00 0.00 1.94
877 2314 5.066893 GCAGGCAGATCAGACAATTAATTCA 59.933 40.000 0.00 0.00 0.00 2.57
963 2400 1.592400 GGCAAACCCCTCGGCTTAAC 61.592 60.000 0.00 0.00 0.00 2.01
1175 2620 1.927174 CTCGCCTTCGTTACAGATTGG 59.073 52.381 0.00 0.00 36.96 3.16
1184 2629 5.934935 TCGTTACAGATTGGTTTCCTTTC 57.065 39.130 0.00 0.00 0.00 2.62
1206 2651 2.825836 AGCCCGCTAGCACATTGC 60.826 61.111 16.45 9.00 45.46 3.56
1235 2680 1.695893 CGATTGTTCGTCCATGCGCT 61.696 55.000 9.73 0.00 40.53 5.92
1272 2720 3.607422 TTTCTGTTGATGTGTGCTTCG 57.393 42.857 0.00 0.00 0.00 3.79
1293 2741 0.798776 CGAACGGAAGCAGCTTGATT 59.201 50.000 13.91 3.49 0.00 2.57
1294 2742 1.464687 CGAACGGAAGCAGCTTGATTG 60.465 52.381 13.91 1.63 0.00 2.67
1295 2743 1.537202 GAACGGAAGCAGCTTGATTGT 59.463 47.619 13.91 2.31 0.00 2.71
1296 2744 1.609208 ACGGAAGCAGCTTGATTGTT 58.391 45.000 13.91 0.00 0.00 2.83
1297 2745 2.778299 ACGGAAGCAGCTTGATTGTTA 58.222 42.857 13.91 0.00 0.00 2.41
1298 2746 2.744202 ACGGAAGCAGCTTGATTGTTAG 59.256 45.455 13.91 0.00 0.00 2.34
1299 2747 2.476854 CGGAAGCAGCTTGATTGTTAGC 60.477 50.000 13.91 0.00 37.66 3.09
1300 2748 2.476854 GGAAGCAGCTTGATTGTTAGCG 60.477 50.000 13.91 0.00 42.18 4.26
1301 2749 0.449388 AGCAGCTTGATTGTTAGCGC 59.551 50.000 0.00 0.00 42.18 5.92
1302 2750 0.168788 GCAGCTTGATTGTTAGCGCA 59.831 50.000 11.47 0.00 42.18 6.09
1303 2751 1.792993 GCAGCTTGATTGTTAGCGCAG 60.793 52.381 11.47 0.00 42.18 5.18
1319 2767 1.132436 CAGCGTGCAACCGTGTATG 59.868 57.895 0.00 0.00 0.00 2.39
1333 2784 2.738643 CGTGTATGGTCAGCTTGGTAGG 60.739 54.545 0.00 0.00 0.00 3.18
1355 2806 1.198408 CGAACTGCTCGTGGTAGTGTA 59.802 52.381 3.39 0.00 42.89 2.90
1602 3053 5.705400 TCTTCCTTGGAGAAATTCACCTTT 58.295 37.500 10.63 0.00 0.00 3.11
1616 3067 3.338249 TCACCTTTCATACTTCTGCAGC 58.662 45.455 9.47 0.00 0.00 5.25
1623 3074 2.005451 CATACTTCTGCAGCTCCACAC 58.995 52.381 9.47 0.00 0.00 3.82
1655 3106 0.610687 GTGTCCTCCTCCTGGTTCTG 59.389 60.000 0.00 0.00 34.23 3.02
1733 3190 7.862372 ACAAACAACTATGCAAATGTGAACTAG 59.138 33.333 0.00 0.00 0.00 2.57
1747 3204 6.613755 TGTGAACTAGGCTTAAAAAGACAC 57.386 37.500 0.00 1.31 39.74 3.67
1776 3233 7.121315 ACTGTGGAAACTGGAAAGCTATTATTC 59.879 37.037 0.00 0.00 0.00 1.75
1809 3286 9.646522 AATACTTGTTATAAATCCTTCCATGCT 57.353 29.630 0.00 0.00 0.00 3.79
2251 3735 5.579564 TTACTGTGTAACCAAACCAAACC 57.420 39.130 0.00 0.00 34.36 3.27
2252 3736 3.432378 ACTGTGTAACCAAACCAAACCA 58.568 40.909 0.00 0.00 34.36 3.67
2253 3737 3.833070 ACTGTGTAACCAAACCAAACCAA 59.167 39.130 0.00 0.00 34.36 3.67
2254 3738 4.283722 ACTGTGTAACCAAACCAAACCAAA 59.716 37.500 0.00 0.00 34.36 3.28
2255 3739 4.566987 TGTGTAACCAAACCAAACCAAAC 58.433 39.130 0.00 0.00 34.36 2.93
2696 4190 8.678593 ACTTTTCTACTTTCTTTAAGGTCCTG 57.321 34.615 0.00 0.00 38.23 3.86
2698 4192 5.161943 TCTACTTTCTTTAAGGTCCTGCC 57.838 43.478 0.00 0.00 38.23 4.85
2742 4236 4.096382 ACTTGAATCAATATGTCCGTTGCC 59.904 41.667 0.00 0.00 0.00 4.52
2867 4366 6.314400 ACCAATTAAAGATTGCACATGAATGC 59.686 34.615 0.00 0.00 46.32 3.56
2902 4401 9.254133 CTTACTTACAATCAATCGTCTCATGAT 57.746 33.333 0.00 0.00 35.39 2.45
3069 4571 2.305858 AAACAGAGTACCTCCCTCGT 57.694 50.000 0.00 0.00 34.08 4.18
3318 5468 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3346 5496 9.875708 AGAGATTCCACTATAGAGACTACATTT 57.124 33.333 6.78 0.00 0.00 2.32
3366 5516 8.798859 ACATTTGGATGTATATAGATGCCTTC 57.201 34.615 8.61 0.00 44.51 3.46
3393 5543 8.798859 AGAGTATATGTTCACTCATTTTGCTT 57.201 30.769 6.22 0.00 42.99 3.91
3402 5552 7.119116 TGTTCACTCATTTTGCTTCGTATGTAT 59.881 33.333 0.00 0.00 0.00 2.29
3530 5683 5.121454 GCTCACTTAAAAGGACATCAGACAG 59.879 44.000 0.00 0.00 0.00 3.51
3541 5694 4.498241 GACATCAGACAGTCACTATTGCA 58.502 43.478 2.66 0.00 34.93 4.08
3553 5706 7.824289 ACAGTCACTATTGCATACATAACTGTT 59.176 33.333 13.45 0.00 40.30 3.16
3599 5752 0.837691 AGCATGAGGGAGGTGTCACA 60.838 55.000 5.12 0.00 0.00 3.58
3601 5754 1.269958 CATGAGGGAGGTGTCACAGA 58.730 55.000 5.12 0.00 0.00 3.41
3602 5755 1.066573 CATGAGGGAGGTGTCACAGAC 60.067 57.143 5.12 0.00 0.00 3.51
3603 5756 0.188587 TGAGGGAGGTGTCACAGACT 59.811 55.000 5.12 0.00 33.15 3.24
3604 5757 0.892063 GAGGGAGGTGTCACAGACTC 59.108 60.000 5.12 2.41 33.15 3.36
3665 5818 3.550561 TGCAAAGTGTTTTTATCGCTCG 58.449 40.909 0.00 0.00 0.00 5.03
3712 5865 8.020777 TCCGTTGGTGTCAGGTTATATAATAA 57.979 34.615 0.00 0.00 0.00 1.40
3785 5938 3.754188 GATCTTGTGCAAGGTCATGAC 57.246 47.619 17.91 17.91 45.49 3.06
3819 5972 1.358046 GCAAATGATCGCCTCAGCC 59.642 57.895 0.00 0.00 37.28 4.85
3866 6019 0.390603 CAACCCGATGCTTGGTACGA 60.391 55.000 0.00 0.00 33.52 3.43
3998 6461 1.423845 GCGTACTTGCCAATGTCGG 59.576 57.895 0.00 0.00 0.00 4.79
4177 6647 4.179599 GAGGAGGGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
4344 6814 5.082425 AGAAGGATCAAATGCCTCTTGTTT 58.918 37.500 0.00 0.00 32.07 2.83
4360 6830 4.478317 TCTTGTTTGATGAGGTGGGGATAT 59.522 41.667 0.00 0.00 0.00 1.63
4413 6884 2.713863 TAAACGTGAAGTGGGGTTGT 57.286 45.000 0.00 0.00 0.00 3.32
4414 6885 1.099689 AAACGTGAAGTGGGGTTGTG 58.900 50.000 0.00 0.00 0.00 3.33
4652 7129 8.349983 GGCACGTCATCCTAATATTTACAAAAT 58.650 33.333 0.00 0.00 0.00 1.82
4738 7221 4.210120 GGTCGTGAATCTATAGCTGCAAAG 59.790 45.833 1.02 0.00 0.00 2.77
4942 7430 4.699637 TCGTTCCATAACTGTGTCTTTGT 58.300 39.130 0.00 0.00 33.15 2.83
5513 8184 8.893219 AGTGAAGTATATGTTGTGGTATCATG 57.107 34.615 0.00 0.00 0.00 3.07
5525 8196 6.494893 TGTGGTATCATGTTAAAAGCAGAC 57.505 37.500 0.00 0.00 0.00 3.51
5570 8242 9.543231 TCTTATATTTTGATACGGAGGGAGTAT 57.457 33.333 0.00 0.00 37.49 2.12
6058 9254 6.920569 AACATTGTATGTCGGATCTAAACC 57.079 37.500 0.00 0.00 44.07 3.27
6156 9514 6.788684 TGCAATCATTGAACTTGAATTTGG 57.211 33.333 0.00 0.00 0.00 3.28
6217 9577 5.971763 AGCTCTGATTTCTTACTAGTGTGG 58.028 41.667 5.39 0.00 0.00 4.17
6220 9580 6.651225 GCTCTGATTTCTTACTAGTGTGGTTT 59.349 38.462 5.39 0.00 0.00 3.27
6338 9701 0.323725 ATTTCCCGCAGCTGACCATT 60.324 50.000 20.43 0.00 0.00 3.16
6433 9796 2.932614 CAAACATCCGACCAGAGATCAC 59.067 50.000 0.00 0.00 0.00 3.06
6458 9821 4.042187 AGAATTTCTAGACCCTGTGCAACT 59.958 41.667 0.00 0.00 38.04 3.16
6459 9822 2.839486 TTCTAGACCCTGTGCAACTG 57.161 50.000 0.00 0.00 38.04 3.16
6567 9932 0.861837 CTGACGCTTGTGTTCCACTC 59.138 55.000 0.00 0.00 35.11 3.51
6571 9936 1.954146 GCTTGTGTTCCACTCGCGA 60.954 57.895 9.26 9.26 35.11 5.87
6650 10015 4.293648 CGACCTGCCGTGGTGTCA 62.294 66.667 0.00 0.00 41.00 3.58
6659 10024 1.091537 CCGTGGTGTCAACAACAACT 58.908 50.000 1.75 0.00 46.28 3.16
6781 10148 6.490040 TCTCCTCTTTGTTTTGTGGAATAAGG 59.510 38.462 0.00 0.00 0.00 2.69
6794 10161 3.199946 TGGAATAAGGTCTGTTAGCAGGG 59.800 47.826 6.75 0.00 42.78 4.45
6800 10167 3.756117 AGGTCTGTTAGCAGGGAAAAAG 58.244 45.455 6.75 0.00 42.78 2.27
6803 10170 4.767409 GGTCTGTTAGCAGGGAAAAAGAAT 59.233 41.667 6.75 0.00 42.78 2.40
7093 10490 6.200854 GCAAAAGAAACCTGATTTAACTGTGG 59.799 38.462 0.00 0.00 0.00 4.17
7178 10581 3.067461 TCTCACACGAAAAATTTGGGTGG 59.933 43.478 11.71 4.54 0.00 4.61
7306 10743 6.248433 TCAATAAGATGAAGCTTGTTTCCCT 58.752 36.000 2.10 0.00 28.42 4.20
7323 10760 3.719871 TCCCTTGGCTAGTCATAGTGAA 58.280 45.455 0.00 0.00 0.00 3.18
7337 10774 7.612677 AGTCATAGTGAAAGTAACTTAGGTGG 58.387 38.462 0.00 0.00 0.00 4.61
7365 10802 7.703328 ACATAACACGTCTCAAGACAAATTTT 58.297 30.769 10.56 0.00 44.99 1.82
7366 10803 7.643764 ACATAACACGTCTCAAGACAAATTTTG 59.356 33.333 10.56 7.59 44.99 2.44
7367 10804 4.351192 ACACGTCTCAAGACAAATTTTGC 58.649 39.130 9.04 2.76 44.99 3.68
7369 10806 5.036737 CACGTCTCAAGACAAATTTTGCTT 58.963 37.500 9.04 10.14 44.99 3.91
7370 10807 6.183360 ACACGTCTCAAGACAAATTTTGCTTA 60.183 34.615 9.04 0.00 44.99 3.09
7371 10808 6.857964 CACGTCTCAAGACAAATTTTGCTTAT 59.142 34.615 9.04 0.00 44.99 1.73
7372 10809 6.857964 ACGTCTCAAGACAAATTTTGCTTATG 59.142 34.615 9.04 9.05 44.99 1.90
7373 10810 6.857964 CGTCTCAAGACAAATTTTGCTTATGT 59.142 34.615 9.04 0.00 44.99 2.29
7374 10811 7.149080 CGTCTCAAGACAAATTTTGCTTATGTG 60.149 37.037 9.04 5.22 44.99 3.21
7375 10812 7.862372 GTCTCAAGACAAATTTTGCTTATGTGA 59.138 33.333 9.04 7.09 44.18 3.58
7395 10832 6.768483 TGTGACATGAAGTTAATGAGGAGAA 58.232 36.000 7.25 0.00 0.00 2.87
7411 10848 5.184892 AGGAGAAAGATGCTTGTGGTAAT 57.815 39.130 0.00 0.00 0.00 1.89
7416 10853 8.560374 GGAGAAAGATGCTTGTGGTAATATAAC 58.440 37.037 0.00 0.00 0.00 1.89
7417 10854 9.109393 GAGAAAGATGCTTGTGGTAATATAACA 57.891 33.333 0.00 0.00 0.00 2.41
7418 10855 8.893727 AGAAAGATGCTTGTGGTAATATAACAC 58.106 33.333 0.00 0.00 46.44 3.32
7427 10864 6.920569 GTGGTAATATAACACACCCTGAAG 57.079 41.667 0.82 0.00 45.57 3.02
7428 10865 6.412214 GTGGTAATATAACACACCCTGAAGT 58.588 40.000 0.82 0.00 45.57 3.01
7429 10866 7.558604 GTGGTAATATAACACACCCTGAAGTA 58.441 38.462 0.82 0.00 45.57 2.24
7430 10867 8.042515 GTGGTAATATAACACACCCTGAAGTAA 58.957 37.037 0.82 0.00 45.57 2.24
7431 10868 8.604184 TGGTAATATAACACACCCTGAAGTAAA 58.396 33.333 0.00 0.00 0.00 2.01
7432 10869 9.452287 GGTAATATAACACACCCTGAAGTAAAA 57.548 33.333 0.00 0.00 0.00 1.52
7435 10872 9.747898 AATATAACACACCCTGAAGTAAAATGA 57.252 29.630 0.00 0.00 0.00 2.57
7436 10873 7.687941 ATAACACACCCTGAAGTAAAATGAG 57.312 36.000 0.00 0.00 0.00 2.90
7437 10874 5.048846 ACACACCCTGAAGTAAAATGAGT 57.951 39.130 0.00 0.00 0.00 3.41
7438 10875 5.063880 ACACACCCTGAAGTAAAATGAGTC 58.936 41.667 0.00 0.00 0.00 3.36
7439 10876 5.163195 ACACACCCTGAAGTAAAATGAGTCT 60.163 40.000 0.00 0.00 0.00 3.24
7440 10877 6.042781 ACACACCCTGAAGTAAAATGAGTCTA 59.957 38.462 0.00 0.00 0.00 2.59
7441 10878 7.106239 CACACCCTGAAGTAAAATGAGTCTAT 58.894 38.462 0.00 0.00 0.00 1.98
7442 10879 8.258007 CACACCCTGAAGTAAAATGAGTCTATA 58.742 37.037 0.00 0.00 0.00 1.31
7443 10880 8.993424 ACACCCTGAAGTAAAATGAGTCTATAT 58.007 33.333 0.00 0.00 0.00 0.86
7444 10881 9.482627 CACCCTGAAGTAAAATGAGTCTATATC 57.517 37.037 0.00 0.00 0.00 1.63
7445 10882 9.440761 ACCCTGAAGTAAAATGAGTCTATATCT 57.559 33.333 0.00 0.00 0.00 1.98
7446 10883 9.921637 CCCTGAAGTAAAATGAGTCTATATCTC 57.078 37.037 0.00 0.00 0.00 2.75
7466 10903 9.976511 ATATCTCAATTAATGAAGGTTTGCATG 57.023 29.630 0.00 0.00 37.67 4.06
7467 10904 7.230849 TCTCAATTAATGAAGGTTTGCATGT 57.769 32.000 0.00 0.00 37.67 3.21
7468 10905 7.669427 TCTCAATTAATGAAGGTTTGCATGTT 58.331 30.769 0.00 0.00 37.67 2.71
7469 10906 8.801299 TCTCAATTAATGAAGGTTTGCATGTTA 58.199 29.630 0.00 0.00 37.67 2.41
7470 10907 9.590451 CTCAATTAATGAAGGTTTGCATGTTAT 57.410 29.630 0.00 0.00 37.67 1.89
7471 10908 9.585099 TCAATTAATGAAGGTTTGCATGTTATC 57.415 29.630 0.00 0.00 34.30 1.75
7472 10909 9.368674 CAATTAATGAAGGTTTGCATGTTATCA 57.631 29.630 0.00 0.00 0.00 2.15
7474 10911 9.754382 ATTAATGAAGGTTTGCATGTTATCATC 57.246 29.630 0.00 0.00 31.15 2.92
7475 10912 7.414222 AATGAAGGTTTGCATGTTATCATCT 57.586 32.000 0.00 0.00 31.15 2.90
7476 10913 8.523915 AATGAAGGTTTGCATGTTATCATCTA 57.476 30.769 0.00 0.00 31.15 1.98
7477 10914 7.320443 TGAAGGTTTGCATGTTATCATCTAC 57.680 36.000 0.00 0.00 31.15 2.59
7478 10915 7.112122 TGAAGGTTTGCATGTTATCATCTACT 58.888 34.615 0.00 0.00 31.15 2.57
7479 10916 7.280876 TGAAGGTTTGCATGTTATCATCTACTC 59.719 37.037 0.00 0.00 31.15 2.59
7480 10917 6.893583 AGGTTTGCATGTTATCATCTACTCT 58.106 36.000 0.00 0.00 31.15 3.24
7481 10918 6.989169 AGGTTTGCATGTTATCATCTACTCTC 59.011 38.462 0.00 0.00 31.15 3.20
7482 10919 6.989169 GGTTTGCATGTTATCATCTACTCTCT 59.011 38.462 0.00 0.00 31.15 3.10
7483 10920 7.170658 GGTTTGCATGTTATCATCTACTCTCTC 59.829 40.741 0.00 0.00 31.15 3.20
7484 10921 6.338214 TGCATGTTATCATCTACTCTCTCC 57.662 41.667 0.00 0.00 31.15 3.71
7485 10922 5.835280 TGCATGTTATCATCTACTCTCTCCA 59.165 40.000 0.00 0.00 31.15 3.86
7486 10923 6.496218 TGCATGTTATCATCTACTCTCTCCAT 59.504 38.462 0.00 0.00 31.15 3.41
7487 10924 7.015974 TGCATGTTATCATCTACTCTCTCCATT 59.984 37.037 0.00 0.00 31.15 3.16
7488 10925 7.545265 GCATGTTATCATCTACTCTCTCCATTC 59.455 40.741 0.00 0.00 31.15 2.67
7489 10926 7.531857 TGTTATCATCTACTCTCTCCATTCC 57.468 40.000 0.00 0.00 0.00 3.01
7490 10927 7.301420 TGTTATCATCTACTCTCTCCATTCCT 58.699 38.462 0.00 0.00 0.00 3.36
7491 10928 8.448816 TGTTATCATCTACTCTCTCCATTCCTA 58.551 37.037 0.00 0.00 0.00 2.94
7492 10929 9.303116 GTTATCATCTACTCTCTCCATTCCTAA 57.697 37.037 0.00 0.00 0.00 2.69
7493 10930 9.883293 TTATCATCTACTCTCTCCATTCCTAAA 57.117 33.333 0.00 0.00 0.00 1.85
7494 10931 8.971032 ATCATCTACTCTCTCCATTCCTAAAT 57.029 34.615 0.00 0.00 0.00 1.40
7502 10939 8.997734 ACTCTCTCCATTCCTAAATATTTGTCT 58.002 33.333 11.05 0.00 0.00 3.41
7503 10940 9.844257 CTCTCTCCATTCCTAAATATTTGTCTT 57.156 33.333 11.05 0.00 0.00 3.01
7506 10943 9.109393 TCTCCATTCCTAAATATTTGTCTTTCG 57.891 33.333 11.05 0.00 0.00 3.46
7507 10944 9.109393 CTCCATTCCTAAATATTTGTCTTTCGA 57.891 33.333 11.05 0.00 0.00 3.71
7508 10945 9.627123 TCCATTCCTAAATATTTGTCTTTCGAT 57.373 29.630 11.05 0.00 0.00 3.59
7518 10955 9.965824 AATATTTGTCTTTCGATTTCAACAAGT 57.034 25.926 0.00 0.00 0.00 3.16
7519 10956 7.684062 ATTTGTCTTTCGATTTCAACAAGTG 57.316 32.000 0.00 0.00 0.00 3.16
7520 10957 6.429791 TTGTCTTTCGATTTCAACAAGTGA 57.570 33.333 0.00 0.00 0.00 3.41
7521 10958 5.806286 TGTCTTTCGATTTCAACAAGTGAC 58.194 37.500 0.00 0.00 35.39 3.67
7522 10959 5.584649 TGTCTTTCGATTTCAACAAGTGACT 59.415 36.000 0.00 0.00 35.39 3.41
7523 10960 6.759356 TGTCTTTCGATTTCAACAAGTGACTA 59.241 34.615 0.00 0.00 35.39 2.59
7524 10961 7.441157 TGTCTTTCGATTTCAACAAGTGACTAT 59.559 33.333 0.00 0.00 35.39 2.12
7525 10962 8.922676 GTCTTTCGATTTCAACAAGTGACTATA 58.077 33.333 0.00 0.00 35.39 1.31
7526 10963 9.653287 TCTTTCGATTTCAACAAGTGACTATAT 57.347 29.630 0.00 0.00 35.39 0.86
7529 10966 8.556517 TCGATTTCAACAAGTGACTATATACG 57.443 34.615 0.00 0.00 35.39 3.06
7530 10967 8.400186 TCGATTTCAACAAGTGACTATATACGA 58.600 33.333 0.00 0.00 35.39 3.43
7531 10968 9.016623 CGATTTCAACAAGTGACTATATACGAA 57.983 33.333 0.00 0.00 35.39 3.85
7533 10970 7.751047 TTCAACAAGTGACTATATACGAAGC 57.249 36.000 0.00 0.00 35.39 3.86
7534 10971 6.859017 TCAACAAGTGACTATATACGAAGCA 58.141 36.000 0.00 0.00 0.00 3.91
7535 10972 7.317390 TCAACAAGTGACTATATACGAAGCAA 58.683 34.615 0.00 0.00 0.00 3.91
7536 10973 7.815549 TCAACAAGTGACTATATACGAAGCAAA 59.184 33.333 0.00 0.00 0.00 3.68
7537 10974 8.440059 CAACAAGTGACTATATACGAAGCAAAA 58.560 33.333 0.00 0.00 0.00 2.44
7538 10975 8.718102 ACAAGTGACTATATACGAAGCAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
7539 10976 8.604035 ACAAGTGACTATATACGAAGCAAAATG 58.396 33.333 0.00 0.00 0.00 2.32
7540 10977 8.817100 CAAGTGACTATATACGAAGCAAAATGA 58.183 33.333 0.00 0.00 0.00 2.57
7541 10978 8.942338 AGTGACTATATACGAAGCAAAATGAA 57.058 30.769 0.00 0.00 0.00 2.57
7542 10979 9.547753 AGTGACTATATACGAAGCAAAATGAAT 57.452 29.630 0.00 0.00 0.00 2.57
7543 10980 9.586150 GTGACTATATACGAAGCAAAATGAATG 57.414 33.333 0.00 0.00 0.00 2.67
7544 10981 9.541143 TGACTATATACGAAGCAAAATGAATGA 57.459 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.568592 GGGAATTCAGAGATGGGAGTTTGT 60.569 45.833 7.93 0.00 0.00 2.83
1 2 3.950395 GGGAATTCAGAGATGGGAGTTTG 59.050 47.826 7.93 0.00 0.00 2.93
2 3 3.593328 TGGGAATTCAGAGATGGGAGTTT 59.407 43.478 7.93 0.00 0.00 2.66
3 4 3.192944 TGGGAATTCAGAGATGGGAGTT 58.807 45.455 7.93 0.00 0.00 3.01
4 5 2.850833 TGGGAATTCAGAGATGGGAGT 58.149 47.619 7.93 0.00 0.00 3.85
5 6 4.396522 GAATGGGAATTCAGAGATGGGAG 58.603 47.826 7.93 0.00 0.00 4.30
6 7 3.139025 GGAATGGGAATTCAGAGATGGGA 59.861 47.826 7.93 0.00 32.39 4.37
7 8 3.494332 GGAATGGGAATTCAGAGATGGG 58.506 50.000 7.93 0.00 32.39 4.00
8 9 3.139770 AGGGAATGGGAATTCAGAGATGG 59.860 47.826 7.93 0.00 32.39 3.51
9 10 4.104420 AGAGGGAATGGGAATTCAGAGATG 59.896 45.833 7.93 0.00 32.39 2.90
10 11 4.314238 AGAGGGAATGGGAATTCAGAGAT 58.686 43.478 7.93 0.00 32.39 2.75
11 12 3.713764 GAGAGGGAATGGGAATTCAGAGA 59.286 47.826 7.93 0.00 32.39 3.10
12 13 3.181446 GGAGAGGGAATGGGAATTCAGAG 60.181 52.174 7.93 0.00 32.39 3.35
13 14 2.780010 GGAGAGGGAATGGGAATTCAGA 59.220 50.000 7.93 0.00 32.39 3.27
14 15 2.158549 GGGAGAGGGAATGGGAATTCAG 60.159 54.545 7.93 0.00 32.39 3.02
15 16 1.852965 GGGAGAGGGAATGGGAATTCA 59.147 52.381 7.93 0.00 32.39 2.57
16 17 1.145945 GGGGAGAGGGAATGGGAATTC 59.854 57.143 0.00 0.00 0.00 2.17
17 18 1.235756 GGGGAGAGGGAATGGGAATT 58.764 55.000 0.00 0.00 0.00 2.17
18 19 0.047802 TGGGGAGAGGGAATGGGAAT 59.952 55.000 0.00 0.00 0.00 3.01
19 20 0.047802 ATGGGGAGAGGGAATGGGAA 59.952 55.000 0.00 0.00 0.00 3.97
20 21 0.401979 GATGGGGAGAGGGAATGGGA 60.402 60.000 0.00 0.00 0.00 4.37
21 22 1.772819 CGATGGGGAGAGGGAATGGG 61.773 65.000 0.00 0.00 0.00 4.00
22 23 1.056700 ACGATGGGGAGAGGGAATGG 61.057 60.000 0.00 0.00 0.00 3.16
23 24 0.839946 AACGATGGGGAGAGGGAATG 59.160 55.000 0.00 0.00 0.00 2.67
24 25 0.839946 CAACGATGGGGAGAGGGAAT 59.160 55.000 0.00 0.00 0.00 3.01
25 26 1.910580 GCAACGATGGGGAGAGGGAA 61.911 60.000 0.00 0.00 0.00 3.97
26 27 2.367202 GCAACGATGGGGAGAGGGA 61.367 63.158 0.00 0.00 0.00 4.20
27 28 2.190578 GCAACGATGGGGAGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
28 29 2.190578 GGCAACGATGGGGAGAGG 59.809 66.667 0.00 0.00 0.00 3.69
29 30 0.322456 TTTGGCAACGATGGGGAGAG 60.322 55.000 0.00 0.00 42.51 3.20
30 31 0.608035 GTTTGGCAACGATGGGGAGA 60.608 55.000 0.00 0.00 42.51 3.71
31 32 0.893270 TGTTTGGCAACGATGGGGAG 60.893 55.000 0.00 0.00 42.51 4.30
32 33 1.151679 TGTTTGGCAACGATGGGGA 59.848 52.632 0.00 0.00 42.51 4.81
33 34 1.288752 GTGTTTGGCAACGATGGGG 59.711 57.895 0.00 0.00 42.51 4.96
34 35 1.081509 CGTGTTTGGCAACGATGGG 60.082 57.895 0.00 0.00 42.51 4.00
35 36 0.030101 AACGTGTTTGGCAACGATGG 59.970 50.000 16.29 0.63 42.51 3.51
36 37 1.119635 CAACGTGTTTGGCAACGATG 58.880 50.000 16.29 11.01 42.51 3.84
37 38 3.542825 CAACGTGTTTGGCAACGAT 57.457 47.368 16.29 2.24 42.51 3.73
45 46 5.808030 ACAAGTAATTTTCCCAACGTGTTTG 59.192 36.000 0.00 0.00 31.90 2.93
46 47 5.968254 ACAAGTAATTTTCCCAACGTGTTT 58.032 33.333 0.00 0.00 31.90 2.83
47 48 5.585820 ACAAGTAATTTTCCCAACGTGTT 57.414 34.783 0.00 0.00 31.90 3.32
48 49 6.696441 TTACAAGTAATTTTCCCAACGTGT 57.304 33.333 0.00 0.00 38.02 4.49
49 50 7.114247 CACATTACAAGTAATTTTCCCAACGTG 59.886 37.037 2.82 2.45 33.79 4.49
50 51 7.142680 CACATTACAAGTAATTTTCCCAACGT 58.857 34.615 2.82 0.00 33.79 3.99
51 52 6.088883 GCACATTACAAGTAATTTTCCCAACG 59.911 38.462 2.82 0.00 33.79 4.10
52 53 6.926272 TGCACATTACAAGTAATTTTCCCAAC 59.074 34.615 2.82 0.00 33.79 3.77
53 54 7.055667 TGCACATTACAAGTAATTTTCCCAA 57.944 32.000 2.82 0.00 33.79 4.12
54 55 6.656632 TGCACATTACAAGTAATTTTCCCA 57.343 33.333 2.82 0.00 33.79 4.37
55 56 7.096551 ACATGCACATTACAAGTAATTTTCCC 58.903 34.615 2.82 0.00 33.79 3.97
56 57 9.801873 ATACATGCACATTACAAGTAATTTTCC 57.198 29.630 2.82 0.00 33.79 3.13
113 114 9.809096 AACAACAATAACAACAACAACATATCA 57.191 25.926 0.00 0.00 0.00 2.15
115 116 9.593134 ACAACAACAATAACAACAACAACATAT 57.407 25.926 0.00 0.00 0.00 1.78
117 118 7.897575 ACAACAACAATAACAACAACAACAT 57.102 28.000 0.00 0.00 0.00 2.71
131 149 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
159 177 0.470766 TAGAACACCACCACCACCAC 59.529 55.000 0.00 0.00 0.00 4.16
160 178 1.214217 TTAGAACACCACCACCACCA 58.786 50.000 0.00 0.00 0.00 4.17
161 179 2.579410 ATTAGAACACCACCACCACC 57.421 50.000 0.00 0.00 0.00 4.61
162 180 7.875327 ATAATAATTAGAACACCACCACCAC 57.125 36.000 0.00 0.00 0.00 4.16
211 229 9.209297 GTTTTCTTTTTACAATGTGACATTTGC 57.791 29.630 8.30 0.00 0.00 3.68
252 270 9.599322 CAAACATTTTATCGGTAATAGATGCTC 57.401 33.333 0.00 0.00 0.00 4.26
254 272 8.076178 AGCAAACATTTTATCGGTAATAGATGC 58.924 33.333 0.00 0.00 0.00 3.91
413 434 7.137426 GCTGCATATTCCAAGAAAGAAGTATG 58.863 38.462 0.00 0.00 0.00 2.39
417 438 4.595116 CGCTGCATATTCCAAGAAAGAAG 58.405 43.478 0.00 0.00 0.00 2.85
452 473 9.459640 GCAAACATCTACTATTTACGAGACATA 57.540 33.333 0.00 0.00 0.00 2.29
466 487 9.502091 TTTTACAAGACATAGCAAACATCTACT 57.498 29.630 0.00 0.00 0.00 2.57
531 552 3.120304 GCTGAAAACAATGTCCCTACGTC 60.120 47.826 0.00 0.00 0.00 4.34
541 562 3.887741 TGTCGATGTGCTGAAAACAATG 58.112 40.909 0.00 0.00 0.00 2.82
551 572 0.035317 ACACACCATGTCGATGTGCT 59.965 50.000 14.41 1.89 46.19 4.40
557 578 0.901827 AGCCATACACACCATGTCGA 59.098 50.000 0.00 0.00 42.09 4.20
598 619 5.309323 TGAATTCTTTGGATTGCTTACCG 57.691 39.130 7.05 0.00 0.00 4.02
629 650 7.687941 AACACACAATATTTTCTACTCCCTG 57.312 36.000 0.00 0.00 0.00 4.45
877 2314 3.823873 TGCCAACGGTTTTATGAACTGAT 59.176 39.130 8.96 0.00 0.00 2.90
963 2400 0.841289 TGGCTAGGGTTTAATCCGGG 59.159 55.000 0.00 0.00 0.00 5.73
1137 2582 4.569347 CGGGGGTAGGGGTAGGGG 62.569 77.778 0.00 0.00 0.00 4.79
1139 2584 4.167838 AGCGGGGGTAGGGGTAGG 62.168 72.222 0.00 0.00 0.00 3.18
1140 2585 2.523657 GAGCGGGGGTAGGGGTAG 60.524 72.222 0.00 0.00 0.00 3.18
1141 2586 4.528039 CGAGCGGGGGTAGGGGTA 62.528 72.222 0.00 0.00 0.00 3.69
1166 2611 4.352595 TCCAGGAAAGGAAACCAATCTGTA 59.647 41.667 0.00 0.00 33.93 2.74
1175 2620 0.960861 CGGGCTCCAGGAAAGGAAAC 60.961 60.000 0.00 0.00 37.20 2.78
1184 2629 4.537433 GTGCTAGCGGGCTCCAGG 62.537 72.222 10.77 0.00 0.00 4.45
1206 2651 2.613971 GAACAATCGTTCGCGCAAG 58.386 52.632 8.75 0.00 42.05 4.01
1255 2703 1.136529 CGACGAAGCACACATCAACAG 60.137 52.381 0.00 0.00 0.00 3.16
1272 2720 0.944311 TCAAGCTGCTTCCGTTCGAC 60.944 55.000 12.82 0.00 0.00 4.20
1300 2748 2.677003 ATACACGGTTGCACGCTGC 61.677 57.895 0.00 3.44 45.29 5.25
1301 2749 1.132436 CATACACGGTTGCACGCTG 59.868 57.895 0.00 0.00 37.37 5.18
1302 2750 2.032634 CCATACACGGTTGCACGCT 61.033 57.895 0.00 0.00 37.37 5.07
1303 2751 2.235536 GACCATACACGGTTGCACGC 62.236 60.000 0.00 0.00 40.22 5.34
1304 2752 0.946700 TGACCATACACGGTTGCACG 60.947 55.000 0.00 0.00 40.22 5.34
1305 2753 0.796312 CTGACCATACACGGTTGCAC 59.204 55.000 0.00 0.00 40.22 4.57
1306 2754 0.953471 GCTGACCATACACGGTTGCA 60.953 55.000 0.00 0.00 40.22 4.08
1307 2755 0.673644 AGCTGACCATACACGGTTGC 60.674 55.000 0.00 0.00 40.22 4.17
1308 2756 1.464608 CAAGCTGACCATACACGGTTG 59.535 52.381 0.00 0.00 40.22 3.77
1309 2757 1.610624 CCAAGCTGACCATACACGGTT 60.611 52.381 0.00 0.00 40.22 4.44
1310 2758 0.036388 CCAAGCTGACCATACACGGT 60.036 55.000 0.00 0.00 43.91 4.83
1311 2759 0.036388 ACCAAGCTGACCATACACGG 60.036 55.000 0.00 0.00 0.00 4.94
1312 2760 2.540515 CTACCAAGCTGACCATACACG 58.459 52.381 0.00 0.00 0.00 4.49
1313 2761 2.500098 TCCTACCAAGCTGACCATACAC 59.500 50.000 0.00 0.00 0.00 2.90
1314 2762 2.500098 GTCCTACCAAGCTGACCATACA 59.500 50.000 0.00 0.00 0.00 2.29
1319 2767 0.606604 TTCGTCCTACCAAGCTGACC 59.393 55.000 0.00 0.00 0.00 4.02
1355 2806 5.455392 CACAAAGATGAATTTCGCTCAAGT 58.545 37.500 0.00 0.00 0.00 3.16
1602 3053 1.901833 TGTGGAGCTGCAGAAGTATGA 59.098 47.619 20.43 0.00 0.00 2.15
1616 3067 5.592054 ACACGATGATAATAGTGTGTGGAG 58.408 41.667 8.07 0.00 44.90 3.86
1623 3074 5.336055 GGAGGAGGACACGATGATAATAGTG 60.336 48.000 1.91 1.91 40.17 2.74
1733 3190 4.279659 CACAGTTCGTGTCTTTTTAAGCC 58.720 43.478 0.00 0.00 41.03 4.35
1747 3204 2.287009 GCTTTCCAGTTTCCACAGTTCG 60.287 50.000 0.00 0.00 0.00 3.95
2251 3735 9.748708 TGATTTTATTTGACCTCAGAAAGTTTG 57.251 29.630 0.00 0.00 0.00 2.93
2252 3736 9.750125 GTGATTTTATTTGACCTCAGAAAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
2253 3737 8.912988 TGTGATTTTATTTGACCTCAGAAAGTT 58.087 29.630 0.00 0.00 0.00 2.66
2254 3738 8.352942 GTGTGATTTTATTTGACCTCAGAAAGT 58.647 33.333 0.00 0.00 0.00 2.66
2255 3739 7.809806 GGTGTGATTTTATTTGACCTCAGAAAG 59.190 37.037 0.00 0.00 0.00 2.62
2303 3788 2.339712 GGCAACGCACAGGCATTT 59.660 55.556 0.00 0.00 41.24 2.32
2397 3885 3.797184 GCAATGTTTCCGCTAACAAACCA 60.797 43.478 4.94 0.00 41.02 3.67
2472 3962 4.365514 TCTGGAAATGCACAAGTCCTTA 57.634 40.909 0.00 0.00 0.00 2.69
2556 4047 7.279313 GCCACAATCAAAGCTCATTTATTCATT 59.721 33.333 0.00 0.00 0.00 2.57
2558 4049 6.101332 GCCACAATCAAAGCTCATTTATTCA 58.899 36.000 0.00 0.00 0.00 2.57
2696 4190 0.250901 TGTTTGGAGAAGCTGAGGGC 60.251 55.000 0.00 0.00 42.19 5.19
2698 4192 2.557920 ACTGTTTGGAGAAGCTGAGG 57.442 50.000 0.00 0.00 0.00 3.86
2742 4236 3.242608 TGTTCCTTTTCTTCGTTTGCTCG 60.243 43.478 0.00 0.00 0.00 5.03
2771 4266 6.255670 GGTAAGGCTCTTCTTGTTTTGTTTTG 59.744 38.462 0.00 0.00 0.00 2.44
2776 4274 4.821805 TCTGGTAAGGCTCTTCTTGTTTTG 59.178 41.667 0.00 0.00 0.00 2.44
2902 4401 1.839191 GTGATGAGGCCCCTATGCA 59.161 57.895 0.00 0.00 0.00 3.96
3098 4600 5.007682 TGGTTTGTAGCAAAGGAAGATACC 58.992 41.667 0.00 0.00 0.00 2.73
3346 5496 8.340002 ACTCTAGAAGGCATCTATATACATCCA 58.660 37.037 0.00 0.00 39.88 3.41
3360 5510 6.833933 TGAGTGAACATATACTCTAGAAGGCA 59.166 38.462 0.00 0.00 42.86 4.75
3366 5516 9.539825 AGCAAAATGAGTGAACATATACTCTAG 57.460 33.333 0.00 0.00 42.86 2.43
3393 5543 9.961264 AGAGATTCCACTATAGAATACATACGA 57.039 33.333 6.78 0.00 34.12 3.43
3530 5683 8.450964 ACAAACAGTTATGTATGCAATAGTGAC 58.549 33.333 0.00 0.00 39.29 3.67
3553 5706 7.721842 TGGTCTTTTGGTCTGAATATAACACAA 59.278 33.333 0.00 0.00 0.00 3.33
3665 5818 7.815068 ACGGATACATAGATAAATGCTCTGAAC 59.185 37.037 0.00 0.00 0.00 3.18
3712 5865 4.713792 ACAAAGTCTCATCCCAACTCTT 57.286 40.909 0.00 0.00 0.00 2.85
3785 5938 7.952101 CGATCATTTGCGTTCTTATTATGGTAG 59.048 37.037 0.00 0.00 0.00 3.18
3819 5972 0.110373 GTTAGCGTTTGCCGTTGGAG 60.110 55.000 0.00 0.00 44.31 3.86
3866 6019 2.266689 GACCCAATACCGGTGCGT 59.733 61.111 19.93 5.40 32.27 5.24
3928 6081 9.139174 ACGACATTTGTTCCATCAATTATTTTC 57.861 29.630 0.00 0.00 0.00 2.29
3998 6461 2.847715 CCCCCTACCCCATCCGAC 60.848 72.222 0.00 0.00 0.00 4.79
4174 6644 1.687493 CTCCTCCACCTCCACCTCC 60.687 68.421 0.00 0.00 0.00 4.30
4175 6645 1.687493 CCTCCTCCACCTCCACCTC 60.687 68.421 0.00 0.00 0.00 3.85
4176 6646 1.153695 TACCTCCTCCACCTCCACCT 61.154 60.000 0.00 0.00 0.00 4.00
4177 6647 0.688087 CTACCTCCTCCACCTCCACC 60.688 65.000 0.00 0.00 0.00 4.61
4178 6648 0.041386 ACTACCTCCTCCACCTCCAC 59.959 60.000 0.00 0.00 0.00 4.02
4179 6649 0.041238 CACTACCTCCTCCACCTCCA 59.959 60.000 0.00 0.00 0.00 3.86
4344 6814 4.365368 CTCCATATATCCCCACCTCATCA 58.635 47.826 0.00 0.00 0.00 3.07
4398 6869 0.179056 AGACACAACCCCACTTCACG 60.179 55.000 0.00 0.00 0.00 4.35
4413 6884 2.058001 ATCCGACGCATGGGAGACA 61.058 57.895 17.76 0.00 35.96 3.41
4414 6885 1.592669 CATCCGACGCATGGGAGAC 60.593 63.158 17.76 6.54 35.96 3.36
4522 6995 5.106436 TGCACTATTCAGCATTGACTTTCAG 60.106 40.000 0.00 0.00 35.51 3.02
4738 7221 8.439286 GCTTCAGTAATCATATTAGCTACAAGC 58.561 37.037 0.00 0.00 42.84 4.01
4942 7430 2.354103 CCGGCTTCACAGATCAAAGAGA 60.354 50.000 0.00 0.00 0.00 3.10
5513 8184 8.865590 TTTAATCTTTGGTGTCTGCTTTTAAC 57.134 30.769 0.00 0.00 0.00 2.01
5675 8373 5.644644 AGCTAGTTTTGATATGCAACAAGC 58.355 37.500 0.00 0.00 45.96 4.01
6156 9514 7.164171 CACAGTATAACGCAATAAAACATGAGC 59.836 37.037 0.00 0.00 0.00 4.26
6217 9577 2.095415 GGGCTGAAACGGTGATGTAAAC 60.095 50.000 0.00 0.00 0.00 2.01
6220 9580 0.687920 TGGGCTGAAACGGTGATGTA 59.312 50.000 0.00 0.00 0.00 2.29
6338 9701 1.340248 AGAAGGTTCGCGACTGAAAGA 59.660 47.619 9.15 0.00 37.43 2.52
6433 9796 3.274288 GCACAGGGTCTAGAAATTCTGG 58.726 50.000 5.64 2.47 0.00 3.86
6571 9936 4.052229 CTCGGTGGACGGAAGCGT 62.052 66.667 5.90 0.00 44.45 5.07
6587 9952 2.044946 GCATGAAACGAGGGCCCT 60.045 61.111 29.18 29.18 0.00 5.19
6659 10024 6.294564 GGGCATCTCGTCTATCAACTGTATTA 60.295 42.308 0.00 0.00 0.00 0.98
6800 10167 7.201556 CCACACTCATACACATAGTCAACATTC 60.202 40.741 0.00 0.00 0.00 2.67
6803 10170 5.011635 ACCACACTCATACACATAGTCAACA 59.988 40.000 0.00 0.00 0.00 3.33
6895 10264 8.925700 GCCAACTTTCATCTAAAATGGTAAAAG 58.074 33.333 0.00 0.00 36.86 2.27
6942 10311 1.782201 ATGCCAGTGAGAACAGCCCA 61.782 55.000 0.00 0.00 0.00 5.36
7093 10490 6.639563 ACAAATCACAAATAATTAGCCCCAC 58.360 36.000 0.00 0.00 0.00 4.61
7151 10548 4.970003 CCAAATTTTTCGTGTGAGACAGAC 59.030 41.667 0.00 0.00 0.00 3.51
7152 10549 4.036262 CCCAAATTTTTCGTGTGAGACAGA 59.964 41.667 0.00 0.00 0.00 3.41
7153 10550 4.202010 ACCCAAATTTTTCGTGTGAGACAG 60.202 41.667 0.00 0.00 0.00 3.51
7154 10551 3.697045 ACCCAAATTTTTCGTGTGAGACA 59.303 39.130 0.00 0.00 0.00 3.41
7178 10581 2.476051 CGCACTGAATCACACGCC 59.524 61.111 0.00 0.00 0.00 5.68
7259 10696 8.958119 TGATTTCAGAGTTGTACTGTAGTTTT 57.042 30.769 0.00 0.00 36.81 2.43
7293 10730 2.158460 ACTAGCCAAGGGAAACAAGCTT 60.158 45.455 0.00 0.00 0.00 3.74
7306 10743 7.241042 AGTTACTTTCACTATGACTAGCCAA 57.759 36.000 0.00 0.00 0.00 4.52
7323 10760 7.599998 CGTGTTATGTTACCACCTAAGTTACTT 59.400 37.037 2.32 2.32 0.00 2.24
7365 10802 7.066163 CCTCATTAACTTCATGTCACATAAGCA 59.934 37.037 0.00 0.00 0.00 3.91
7366 10803 7.280876 TCCTCATTAACTTCATGTCACATAAGC 59.719 37.037 0.00 0.00 0.00 3.09
7367 10804 8.722480 TCCTCATTAACTTCATGTCACATAAG 57.278 34.615 0.00 0.00 0.00 1.73
7369 10806 8.078060 TCTCCTCATTAACTTCATGTCACATA 57.922 34.615 0.00 0.00 0.00 2.29
7370 10807 6.950842 TCTCCTCATTAACTTCATGTCACAT 58.049 36.000 0.00 0.00 0.00 3.21
7371 10808 6.358974 TCTCCTCATTAACTTCATGTCACA 57.641 37.500 0.00 0.00 0.00 3.58
7372 10809 7.604164 TCTTTCTCCTCATTAACTTCATGTCAC 59.396 37.037 0.00 0.00 0.00 3.67
7373 10810 7.679783 TCTTTCTCCTCATTAACTTCATGTCA 58.320 34.615 0.00 0.00 0.00 3.58
7374 10811 8.610896 CATCTTTCTCCTCATTAACTTCATGTC 58.389 37.037 0.00 0.00 0.00 3.06
7375 10812 7.066766 GCATCTTTCTCCTCATTAACTTCATGT 59.933 37.037 0.00 0.00 0.00 3.21
7395 10832 7.067008 GGTGTGTTATATTACCACAAGCATCTT 59.933 37.037 12.41 0.00 40.48 2.40
7411 10848 8.380099 ACTCATTTTACTTCAGGGTGTGTTATA 58.620 33.333 0.00 0.00 0.00 0.98
7416 10853 5.308825 AGACTCATTTTACTTCAGGGTGTG 58.691 41.667 0.00 0.00 0.00 3.82
7417 10854 5.568620 AGACTCATTTTACTTCAGGGTGT 57.431 39.130 0.00 0.00 0.00 4.16
7418 10855 9.482627 GATATAGACTCATTTTACTTCAGGGTG 57.517 37.037 0.00 0.00 0.00 4.61
7419 10856 9.440761 AGATATAGACTCATTTTACTTCAGGGT 57.559 33.333 0.00 0.00 0.00 4.34
7420 10857 9.921637 GAGATATAGACTCATTTTACTTCAGGG 57.078 37.037 0.00 0.00 34.87 4.45
7440 10877 9.976511 CATGCAAACCTTCATTAATTGAGATAT 57.023 29.630 0.00 0.00 35.27 1.63
7441 10878 8.970020 ACATGCAAACCTTCATTAATTGAGATA 58.030 29.630 0.00 0.00 35.27 1.98
7442 10879 7.844009 ACATGCAAACCTTCATTAATTGAGAT 58.156 30.769 0.00 0.00 35.27 2.75
7443 10880 7.230849 ACATGCAAACCTTCATTAATTGAGA 57.769 32.000 0.00 0.00 35.27 3.27
7444 10881 7.894376 AACATGCAAACCTTCATTAATTGAG 57.106 32.000 0.00 0.00 35.27 3.02
7445 10882 9.585099 GATAACATGCAAACCTTCATTAATTGA 57.415 29.630 0.00 0.00 0.00 2.57
7446 10883 9.368674 TGATAACATGCAAACCTTCATTAATTG 57.631 29.630 0.00 0.00 0.00 2.32
7448 10885 9.754382 GATGATAACATGCAAACCTTCATTAAT 57.246 29.630 0.00 0.00 36.82 1.40
7449 10886 8.970020 AGATGATAACATGCAAACCTTCATTAA 58.030 29.630 0.00 0.00 36.82 1.40
7450 10887 8.523915 AGATGATAACATGCAAACCTTCATTA 57.476 30.769 0.00 0.00 36.82 1.90
7451 10888 7.414222 AGATGATAACATGCAAACCTTCATT 57.586 32.000 0.00 0.00 36.82 2.57
7452 10889 7.776969 AGTAGATGATAACATGCAAACCTTCAT 59.223 33.333 0.00 0.00 36.82 2.57
7453 10890 7.112122 AGTAGATGATAACATGCAAACCTTCA 58.888 34.615 0.00 0.00 36.82 3.02
7454 10891 7.497249 AGAGTAGATGATAACATGCAAACCTTC 59.503 37.037 0.00 0.00 36.82 3.46
7455 10892 7.341805 AGAGTAGATGATAACATGCAAACCTT 58.658 34.615 0.00 0.00 36.82 3.50
7456 10893 6.893583 AGAGTAGATGATAACATGCAAACCT 58.106 36.000 0.00 0.00 36.82 3.50
7457 10894 6.989169 AGAGAGTAGATGATAACATGCAAACC 59.011 38.462 0.00 0.00 36.82 3.27
7458 10895 7.170658 GGAGAGAGTAGATGATAACATGCAAAC 59.829 40.741 0.00 0.00 36.82 2.93
7459 10896 7.147672 TGGAGAGAGTAGATGATAACATGCAAA 60.148 37.037 0.00 0.00 36.82 3.68
7460 10897 6.324770 TGGAGAGAGTAGATGATAACATGCAA 59.675 38.462 0.00 0.00 36.82 4.08
7461 10898 5.835280 TGGAGAGAGTAGATGATAACATGCA 59.165 40.000 0.00 0.00 36.82 3.96
7462 10899 6.338214 TGGAGAGAGTAGATGATAACATGC 57.662 41.667 0.00 0.00 36.82 4.06
7463 10900 8.034215 GGAATGGAGAGAGTAGATGATAACATG 58.966 40.741 0.00 0.00 36.82 3.21
7464 10901 7.955185 AGGAATGGAGAGAGTAGATGATAACAT 59.045 37.037 0.00 0.00 39.67 2.71
7465 10902 7.301420 AGGAATGGAGAGAGTAGATGATAACA 58.699 38.462 0.00 0.00 0.00 2.41
7466 10903 7.775053 AGGAATGGAGAGAGTAGATGATAAC 57.225 40.000 0.00 0.00 0.00 1.89
7467 10904 9.883293 TTTAGGAATGGAGAGAGTAGATGATAA 57.117 33.333 0.00 0.00 0.00 1.75
7469 10906 8.971032 ATTTAGGAATGGAGAGAGTAGATGAT 57.029 34.615 0.00 0.00 0.00 2.45
7476 10913 8.997734 AGACAAATATTTAGGAATGGAGAGAGT 58.002 33.333 0.00 0.00 0.00 3.24
7477 10914 9.844257 AAGACAAATATTTAGGAATGGAGAGAG 57.156 33.333 0.00 0.00 0.00 3.20
7480 10917 9.109393 CGAAAGACAAATATTTAGGAATGGAGA 57.891 33.333 0.00 0.00 0.00 3.71
7481 10918 9.109393 TCGAAAGACAAATATTTAGGAATGGAG 57.891 33.333 0.00 0.00 33.31 3.86
7482 10919 9.627123 ATCGAAAGACAAATATTTAGGAATGGA 57.373 29.630 0.00 0.00 46.97 3.41
7492 10929 9.965824 ACTTGTTGAAATCGAAAGACAAATATT 57.034 25.926 0.00 0.00 46.97 1.28
7493 10930 9.398170 CACTTGTTGAAATCGAAAGACAAATAT 57.602 29.630 0.00 0.00 46.97 1.28
7494 10931 8.616942 TCACTTGTTGAAATCGAAAGACAAATA 58.383 29.630 0.00 0.00 46.97 1.40
7495 10932 7.432252 GTCACTTGTTGAAATCGAAAGACAAAT 59.568 33.333 0.00 0.00 38.62 2.32
7496 10933 6.745450 GTCACTTGTTGAAATCGAAAGACAAA 59.255 34.615 0.00 0.00 38.62 2.83
7497 10934 6.093495 AGTCACTTGTTGAAATCGAAAGACAA 59.907 34.615 0.00 0.00 38.62 3.18
7498 10935 5.584649 AGTCACTTGTTGAAATCGAAAGACA 59.415 36.000 0.00 0.00 38.62 3.41
7499 10936 6.049263 AGTCACTTGTTGAAATCGAAAGAC 57.951 37.500 0.00 0.00 38.62 3.01
7500 10937 7.962964 ATAGTCACTTGTTGAAATCGAAAGA 57.037 32.000 0.00 0.00 39.77 2.52
7503 10940 9.016623 CGTATATAGTCACTTGTTGAAATCGAA 57.983 33.333 0.00 0.00 35.39 3.71
7504 10941 8.400186 TCGTATATAGTCACTTGTTGAAATCGA 58.600 33.333 0.00 0.00 35.39 3.59
7505 10942 8.556517 TCGTATATAGTCACTTGTTGAAATCG 57.443 34.615 0.00 0.00 35.39 3.34
7507 10944 8.818057 GCTTCGTATATAGTCACTTGTTGAAAT 58.182 33.333 0.00 0.00 35.39 2.17
7508 10945 7.815549 TGCTTCGTATATAGTCACTTGTTGAAA 59.184 33.333 0.00 0.00 35.39 2.69
7509 10946 7.317390 TGCTTCGTATATAGTCACTTGTTGAA 58.683 34.615 0.00 0.00 35.39 2.69
7510 10947 6.859017 TGCTTCGTATATAGTCACTTGTTGA 58.141 36.000 0.00 0.00 0.00 3.18
7511 10948 7.520119 TTGCTTCGTATATAGTCACTTGTTG 57.480 36.000 0.00 0.00 0.00 3.33
7512 10949 8.542497 TTTTGCTTCGTATATAGTCACTTGTT 57.458 30.769 0.00 0.00 0.00 2.83
7513 10950 8.604035 CATTTTGCTTCGTATATAGTCACTTGT 58.396 33.333 0.00 0.00 0.00 3.16
7514 10951 8.817100 TCATTTTGCTTCGTATATAGTCACTTG 58.183 33.333 0.00 0.00 0.00 3.16
7515 10952 8.942338 TCATTTTGCTTCGTATATAGTCACTT 57.058 30.769 0.00 0.00 0.00 3.16
7516 10953 8.942338 TTCATTTTGCTTCGTATATAGTCACT 57.058 30.769 0.00 0.00 0.00 3.41
7517 10954 9.586150 CATTCATTTTGCTTCGTATATAGTCAC 57.414 33.333 0.00 0.00 0.00 3.67
7518 10955 9.541143 TCATTCATTTTGCTTCGTATATAGTCA 57.459 29.630 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.