Multiple sequence alignment - TraesCS6A01G087500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G087500 chr6A 100.000 5089 0 0 975 6063 55749955 55744867 0.000000e+00 9398.0
1 TraesCS6A01G087500 chr6A 100.000 802 0 0 1 802 55750929 55750128 0.000000e+00 1482.0
2 TraesCS6A01G087500 chr6A 95.714 70 3 0 2236 2305 55748654 55748585 4.970000e-21 113.0
3 TraesCS6A01G087500 chr6A 95.714 70 3 0 2276 2345 55748694 55748625 4.970000e-21 113.0
4 TraesCS6A01G087500 chrUn 92.218 3868 195 40 2273 6063 20834256 20838094 0.000000e+00 5378.0
5 TraesCS6A01G087500 chrUn 94.580 572 29 1 1736 2305 20833757 20834328 0.000000e+00 883.0
6 TraesCS6A01G087500 chrUn 90.333 300 11 6 1021 1312 20832451 20832740 1.600000e-100 377.0
7 TraesCS6A01G087500 chrUn 85.417 288 34 6 286 569 20831898 20832181 5.940000e-75 292.0
8 TraesCS6A01G087500 chrUn 90.821 207 15 3 58 264 20830105 20830307 2.150000e-69 274.0
9 TraesCS6A01G087500 chrUn 82.677 127 6 2 680 802 20832194 20832308 1.390000e-16 99.0
10 TraesCS6A01G087500 chr6B 93.899 1803 89 12 4012 5803 92491462 92489670 0.000000e+00 2700.0
11 TraesCS6A01G087500 chr6B 92.169 1724 66 23 2316 4009 92493193 92491509 0.000000e+00 2372.0
12 TraesCS6A01G087500 chr6B 92.819 1309 62 11 978 2265 92494461 92493164 0.000000e+00 1868.0
13 TraesCS6A01G087500 chr6B 90.826 109 4 4 5938 6043 92479024 92478919 2.280000e-29 141.0
14 TraesCS6A01G087500 chr6B 86.260 131 9 4 681 802 92494967 92494837 3.810000e-27 134.0
15 TraesCS6A01G087500 chr6B 91.429 70 6 0 5863 5932 92479130 92479061 5.000000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G087500 chr6A 55744867 55750929 6062 True 2776.500000 9398 97.85700 1 6063 4 chr6A.!!$R1 6062
1 TraesCS6A01G087500 chrUn 20830105 20838094 7989 False 1217.166667 5378 89.34100 58 6063 6 chrUn.!!$F1 6005
2 TraesCS6A01G087500 chr6B 92489670 92494967 5297 True 1768.500000 2700 91.28675 681 5803 4 chr6B.!!$R2 5122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 2247 0.031449 CACGGGTTGGTTCGCAAAAT 59.969 50.0 0.00 0.0 0.00 1.82 F
724 2298 0.110486 GGAGAAGTTGCTTCCCCACA 59.890 55.0 4.83 0.0 40.98 4.17 F
1436 3274 0.388659 CTCGGGCTCTGAGGATCTTG 59.611 60.0 6.83 0.0 34.92 3.02 F
2081 4517 0.527565 GCTTTGCATGGGGTGTACAG 59.472 55.0 0.00 0.0 0.00 2.74 F
2766 5204 0.898320 AGCACTGAGTGGCGTCTATT 59.102 50.0 15.24 0.0 33.64 1.73 F
3185 5642 0.602638 CCACGGAAGCTTGTACTGCA 60.603 55.0 2.10 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 3378 0.172352 CACACAAAGCAAACCCACGT 59.828 50.0 0.00 0.00 0.00 4.49 R
2561 4999 0.457853 GTGCTACGCTCGGAATGTGA 60.458 55.0 0.00 0.00 0.00 3.58 R
2961 5401 0.029300 ACTTGCGTGCACATGTGTTC 59.971 50.0 26.01 17.48 0.00 3.18 R
2971 5411 0.451135 CAAGAGCGTTACTTGCGTGC 60.451 55.0 0.00 0.00 38.28 5.34 R
4465 6989 0.620410 ATCTTCCGACCCACCCATGA 60.620 55.0 0.00 0.00 0.00 3.07 R
5063 7599 0.889186 CCAGGCTTGCGTTTACACCT 60.889 55.0 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.378710 ACTCCTTAGAAGAAAGTGCAAAAC 57.621 37.500 0.00 0.00 0.00 2.43
25 26 5.885912 ACTCCTTAGAAGAAAGTGCAAAACA 59.114 36.000 0.00 0.00 0.00 2.83
26 27 6.377146 ACTCCTTAGAAGAAAGTGCAAAACAA 59.623 34.615 0.00 0.00 0.00 2.83
27 28 7.068716 ACTCCTTAGAAGAAAGTGCAAAACAAT 59.931 33.333 0.00 0.00 0.00 2.71
28 29 8.458573 TCCTTAGAAGAAAGTGCAAAACAATA 57.541 30.769 0.00 0.00 0.00 1.90
29 30 8.567948 TCCTTAGAAGAAAGTGCAAAACAATAG 58.432 33.333 0.00 0.00 0.00 1.73
30 31 8.567948 CCTTAGAAGAAAGTGCAAAACAATAGA 58.432 33.333 0.00 0.00 0.00 1.98
31 32 9.604626 CTTAGAAGAAAGTGCAAAACAATAGAG 57.395 33.333 0.00 0.00 0.00 2.43
32 33 7.573968 AGAAGAAAGTGCAAAACAATAGAGT 57.426 32.000 0.00 0.00 0.00 3.24
33 34 8.677148 AGAAGAAAGTGCAAAACAATAGAGTA 57.323 30.769 0.00 0.00 0.00 2.59
34 35 8.560374 AGAAGAAAGTGCAAAACAATAGAGTAC 58.440 33.333 0.00 0.00 0.00 2.73
35 36 8.451908 AAGAAAGTGCAAAACAATAGAGTACT 57.548 30.769 0.00 0.00 0.00 2.73
36 37 8.451908 AGAAAGTGCAAAACAATAGAGTACTT 57.548 30.769 0.00 0.00 36.85 2.24
37 38 8.560374 AGAAAGTGCAAAACAATAGAGTACTTC 58.440 33.333 0.00 0.00 34.77 3.01
38 39 7.801716 AAGTGCAAAACAATAGAGTACTTCA 57.198 32.000 0.00 0.00 31.06 3.02
39 40 7.801716 AGTGCAAAACAATAGAGTACTTCAA 57.198 32.000 0.00 0.00 0.00 2.69
40 41 8.220755 AGTGCAAAACAATAGAGTACTTCAAA 57.779 30.769 0.00 0.00 0.00 2.69
41 42 8.682710 AGTGCAAAACAATAGAGTACTTCAAAA 58.317 29.630 0.00 0.00 0.00 2.44
42 43 9.463443 GTGCAAAACAATAGAGTACTTCAAAAT 57.537 29.630 0.00 0.00 0.00 1.82
78 79 9.995003 AATCATCTGAACTAAATAGGCTCTAAG 57.005 33.333 0.00 0.00 0.00 2.18
79 80 7.437748 TCATCTGAACTAAATAGGCTCTAAGC 58.562 38.462 0.00 0.00 41.46 3.09
80 81 7.288852 TCATCTGAACTAAATAGGCTCTAAGCT 59.711 37.037 0.00 0.00 41.99 3.74
81 82 6.810911 TCTGAACTAAATAGGCTCTAAGCTG 58.189 40.000 0.00 0.00 41.99 4.24
82 83 6.607600 TCTGAACTAAATAGGCTCTAAGCTGA 59.392 38.462 0.00 0.00 41.99 4.26
83 84 7.288852 TCTGAACTAAATAGGCTCTAAGCTGAT 59.711 37.037 0.00 0.00 41.99 2.90
84 85 7.212976 TGAACTAAATAGGCTCTAAGCTGATG 58.787 38.462 0.00 0.00 41.99 3.07
85 86 6.985653 ACTAAATAGGCTCTAAGCTGATGA 57.014 37.500 0.00 0.00 41.99 2.92
108 109 5.681337 AAAGAACTAGCAAGACTTTGAGC 57.319 39.130 0.00 0.00 36.36 4.26
111 112 5.372373 AGAACTAGCAAGACTTTGAGCTTT 58.628 37.500 4.06 0.00 38.47 3.51
171 172 4.935808 CCGATTATTAGTCCTAACCCATGC 59.064 45.833 0.00 0.00 0.00 4.06
183 184 0.771127 ACCCATGCTTGGTGTGTAGT 59.229 50.000 16.81 4.28 41.91 2.73
185 186 1.271325 CCCATGCTTGGTGTGTAGTGA 60.271 52.381 16.81 0.00 41.91 3.41
189 190 4.022068 CCATGCTTGGTGTGTAGTGAAAAT 60.022 41.667 10.48 0.00 38.30 1.82
242 243 7.874940 TCTCAAACTTTCATTTCATACCACTG 58.125 34.615 0.00 0.00 0.00 3.66
264 265 3.603965 TTCCCACCTAACCAAACATGT 57.396 42.857 0.00 0.00 0.00 3.21
265 266 2.870175 TCCCACCTAACCAAACATGTG 58.130 47.619 0.00 0.00 0.00 3.21
266 267 2.175931 TCCCACCTAACCAAACATGTGT 59.824 45.455 0.00 0.00 0.00 3.72
267 268 3.394940 TCCCACCTAACCAAACATGTGTA 59.605 43.478 0.00 0.00 0.00 2.90
268 269 3.756434 CCCACCTAACCAAACATGTGTAG 59.244 47.826 0.00 0.00 0.00 2.74
269 270 3.190535 CCACCTAACCAAACATGTGTAGC 59.809 47.826 0.00 0.00 0.00 3.58
270 271 3.818210 CACCTAACCAAACATGTGTAGCA 59.182 43.478 0.00 0.00 0.00 3.49
271 272 4.072131 ACCTAACCAAACATGTGTAGCAG 58.928 43.478 0.00 0.00 0.00 4.24
272 273 4.202419 ACCTAACCAAACATGTGTAGCAGA 60.202 41.667 0.00 0.00 0.00 4.26
273 274 4.759693 CCTAACCAAACATGTGTAGCAGAA 59.240 41.667 0.00 0.00 0.00 3.02
275 276 5.789643 AACCAAACATGTGTAGCAGAAAT 57.210 34.783 0.00 0.00 0.00 2.17
276 277 5.789643 ACCAAACATGTGTAGCAGAAATT 57.210 34.783 0.00 0.00 0.00 1.82
277 278 6.892658 ACCAAACATGTGTAGCAGAAATTA 57.107 33.333 0.00 0.00 0.00 1.40
278 279 6.913170 ACCAAACATGTGTAGCAGAAATTAG 58.087 36.000 0.00 0.00 0.00 1.73
279 280 6.490040 ACCAAACATGTGTAGCAGAAATTAGT 59.510 34.615 0.00 0.00 0.00 2.24
281 282 8.177663 CCAAACATGTGTAGCAGAAATTAGTAG 58.822 37.037 0.00 0.00 0.00 2.57
282 283 8.721478 CAAACATGTGTAGCAGAAATTAGTAGT 58.279 33.333 0.00 0.00 0.00 2.73
283 284 9.938280 AAACATGTGTAGCAGAAATTAGTAGTA 57.062 29.630 0.00 0.00 0.00 1.82
313 1883 4.473444 AGAAAGATGGAAGAAGGCAAACA 58.527 39.130 0.00 0.00 0.00 2.83
332 1902 6.237648 GCAAACAATCAAGCCATAAGAAATCG 60.238 38.462 0.00 0.00 0.00 3.34
333 1903 6.757897 AACAATCAAGCCATAAGAAATCGA 57.242 33.333 0.00 0.00 0.00 3.59
339 1910 6.411376 TCAAGCCATAAGAAATCGAGGTAAA 58.589 36.000 0.00 0.00 0.00 2.01
360 1931 4.751767 AAAATCAAGCCACAGAAACCAA 57.248 36.364 0.00 0.00 0.00 3.67
368 1939 3.706086 AGCCACAGAAACCAAGAAAATGT 59.294 39.130 0.00 0.00 0.00 2.71
374 1945 8.764287 CCACAGAAACCAAGAAAATGTTTTATC 58.236 33.333 0.00 0.00 32.67 1.75
397 1968 8.827832 ATCTTATGGGAATGTTGAAAATCTGA 57.172 30.769 0.00 0.00 0.00 3.27
400 1971 6.862469 ATGGGAATGTTGAAAATCTGATGT 57.138 33.333 0.00 0.00 0.00 3.06
403 1974 5.123820 GGGAATGTTGAAAATCTGATGTCGA 59.876 40.000 0.00 0.00 0.00 4.20
417 1989 6.165577 TCTGATGTCGAAATCAAATCTGACA 58.834 36.000 18.73 0.00 40.24 3.58
421 1993 6.799926 TGTCGAAATCAAATCTGACATTCA 57.200 33.333 0.00 0.00 33.39 2.57
426 1998 6.910972 CGAAATCAAATCTGACATTCAGGATG 59.089 38.462 3.40 0.00 44.39 3.51
428 2000 5.183530 TCAAATCTGACATTCAGGATGGT 57.816 39.130 3.40 0.00 44.39 3.55
429 2001 4.945543 TCAAATCTGACATTCAGGATGGTG 59.054 41.667 3.40 0.00 44.39 4.17
430 2002 4.849813 AATCTGACATTCAGGATGGTGA 57.150 40.909 3.40 0.00 44.39 4.02
431 2003 3.900966 TCTGACATTCAGGATGGTGAG 57.099 47.619 3.40 0.00 44.39 3.51
432 2004 3.176411 TCTGACATTCAGGATGGTGAGT 58.824 45.455 3.40 0.00 44.39 3.41
434 2006 4.777366 TCTGACATTCAGGATGGTGAGTTA 59.223 41.667 3.40 0.00 44.39 2.24
435 2007 5.426509 TCTGACATTCAGGATGGTGAGTTAT 59.573 40.000 3.40 0.00 44.39 1.89
436 2008 5.430886 TGACATTCAGGATGGTGAGTTATG 58.569 41.667 0.00 0.00 40.21 1.90
437 2009 5.045651 TGACATTCAGGATGGTGAGTTATGT 60.046 40.000 0.00 0.00 40.21 2.29
439 2011 5.649395 ACATTCAGGATGGTGAGTTATGTTG 59.351 40.000 0.00 0.00 40.21 3.33
440 2012 3.609853 TCAGGATGGTGAGTTATGTTGC 58.390 45.455 0.00 0.00 36.16 4.17
441 2013 3.008923 TCAGGATGGTGAGTTATGTTGCA 59.991 43.478 0.00 0.00 36.16 4.08
463 2037 2.413765 CGAGCATGCCAGTTTTCTTCAG 60.414 50.000 15.66 0.00 0.00 3.02
489 2063 3.620472 GCATGATTTGCCATTTCAGGGTT 60.620 43.478 0.00 0.00 46.15 4.11
492 2066 3.768757 TGATTTGCCATTTCAGGGTTAGG 59.231 43.478 0.00 0.00 0.00 2.69
493 2067 1.555967 TTGCCATTTCAGGGTTAGGC 58.444 50.000 0.00 0.00 42.32 3.93
494 2068 0.324275 TGCCATTTCAGGGTTAGGCC 60.324 55.000 0.00 0.00 41.33 5.19
497 2071 1.106285 CATTTCAGGGTTAGGCCTGC 58.894 55.000 17.99 8.19 37.43 4.85
516 2090 4.342772 CTGCCATTCTTAAAAATCCGACG 58.657 43.478 0.00 0.00 0.00 5.12
525 2099 8.537049 TTCTTAAAAATCCGACGTCAGATTTA 57.463 30.769 30.27 18.45 40.84 1.40
549 2123 9.917129 TTATAGCGAATTATTTTATCGACCAGA 57.083 29.630 0.00 0.00 38.82 3.86
569 2143 9.748708 GACCAGATGCAAAATATATAAAAGCAA 57.251 29.630 0.00 0.00 33.91 3.91
607 2181 1.714794 ACATCAGTACAGACGCAAGC 58.285 50.000 0.00 0.00 45.62 4.01
608 2182 1.000843 ACATCAGTACAGACGCAAGCA 59.999 47.619 0.00 0.00 45.62 3.91
609 2183 2.274437 CATCAGTACAGACGCAAGCAT 58.726 47.619 0.00 0.00 45.62 3.79
610 2184 1.996292 TCAGTACAGACGCAAGCATC 58.004 50.000 0.00 0.00 45.62 3.91
611 2185 1.272212 TCAGTACAGACGCAAGCATCA 59.728 47.619 0.00 0.00 45.62 3.07
612 2186 1.657594 CAGTACAGACGCAAGCATCAG 59.342 52.381 0.00 0.00 45.62 2.90
613 2187 1.546029 AGTACAGACGCAAGCATCAGA 59.454 47.619 0.00 0.00 45.62 3.27
614 2188 2.029020 AGTACAGACGCAAGCATCAGAA 60.029 45.455 0.00 0.00 45.62 3.02
615 2189 1.151668 ACAGACGCAAGCATCAGAAC 58.848 50.000 0.00 0.00 45.62 3.01
616 2190 1.270518 ACAGACGCAAGCATCAGAACT 60.271 47.619 0.00 0.00 45.62 3.01
617 2191 1.802960 CAGACGCAAGCATCAGAACTT 59.197 47.619 0.00 0.00 45.62 2.66
618 2192 2.995939 CAGACGCAAGCATCAGAACTTA 59.004 45.455 0.00 0.00 45.62 2.24
619 2193 3.433274 CAGACGCAAGCATCAGAACTTAA 59.567 43.478 0.00 0.00 45.62 1.85
620 2194 4.065088 AGACGCAAGCATCAGAACTTAAA 58.935 39.130 0.00 0.00 45.62 1.52
621 2195 4.083802 AGACGCAAGCATCAGAACTTAAAC 60.084 41.667 0.00 0.00 45.62 2.01
622 2196 3.155998 CGCAAGCATCAGAACTTAAACG 58.844 45.455 0.00 0.00 0.00 3.60
623 2197 2.911102 GCAAGCATCAGAACTTAAACGC 59.089 45.455 0.00 0.00 0.00 4.84
624 2198 3.365364 GCAAGCATCAGAACTTAAACGCT 60.365 43.478 0.00 0.00 0.00 5.07
625 2199 4.142902 GCAAGCATCAGAACTTAAACGCTA 60.143 41.667 0.00 0.00 0.00 4.26
626 2200 5.616866 GCAAGCATCAGAACTTAAACGCTAA 60.617 40.000 0.00 0.00 0.00 3.09
627 2201 6.546395 CAAGCATCAGAACTTAAACGCTAAT 58.454 36.000 0.00 0.00 0.00 1.73
628 2202 6.111768 AGCATCAGAACTTAAACGCTAATG 57.888 37.500 0.00 0.00 0.00 1.90
629 2203 5.065218 AGCATCAGAACTTAAACGCTAATGG 59.935 40.000 0.00 0.00 0.00 3.16
630 2204 5.064707 GCATCAGAACTTAAACGCTAATGGA 59.935 40.000 0.00 0.00 0.00 3.41
631 2205 6.403200 GCATCAGAACTTAAACGCTAATGGAA 60.403 38.462 0.00 0.00 0.00 3.53
632 2206 7.679638 GCATCAGAACTTAAACGCTAATGGAAT 60.680 37.037 0.00 0.00 0.00 3.01
633 2207 8.826710 CATCAGAACTTAAACGCTAATGGAATA 58.173 33.333 0.00 0.00 0.00 1.75
634 2208 8.420374 TCAGAACTTAAACGCTAATGGAATAG 57.580 34.615 0.00 0.00 0.00 1.73
635 2209 8.255206 TCAGAACTTAAACGCTAATGGAATAGA 58.745 33.333 0.00 0.00 0.00 1.98
636 2210 8.879759 CAGAACTTAAACGCTAATGGAATAGAA 58.120 33.333 0.00 0.00 0.00 2.10
637 2211 9.444600 AGAACTTAAACGCTAATGGAATAGAAA 57.555 29.630 0.00 0.00 0.00 2.52
638 2212 9.486857 GAACTTAAACGCTAATGGAATAGAAAC 57.513 33.333 0.00 0.00 0.00 2.78
639 2213 8.556213 ACTTAAACGCTAATGGAATAGAAACA 57.444 30.769 0.00 0.00 0.00 2.83
640 2214 8.448615 ACTTAAACGCTAATGGAATAGAAACAC 58.551 33.333 0.00 0.00 0.00 3.32
641 2215 6.811253 AAACGCTAATGGAATAGAAACACA 57.189 33.333 0.00 0.00 0.00 3.72
642 2216 6.811253 AACGCTAATGGAATAGAAACACAA 57.189 33.333 0.00 0.00 0.00 3.33
643 2217 6.178239 ACGCTAATGGAATAGAAACACAAC 57.822 37.500 0.00 0.00 0.00 3.32
644 2218 5.938125 ACGCTAATGGAATAGAAACACAACT 59.062 36.000 0.00 0.00 0.00 3.16
645 2219 7.101054 ACGCTAATGGAATAGAAACACAACTA 58.899 34.615 0.00 0.00 0.00 2.24
646 2220 7.769044 ACGCTAATGGAATAGAAACACAACTAT 59.231 33.333 0.00 0.00 0.00 2.12
647 2221 9.256477 CGCTAATGGAATAGAAACACAACTATA 57.744 33.333 0.00 0.00 0.00 1.31
657 2231 9.745880 ATAGAAACACAACTATATCTAACCACG 57.254 33.333 0.00 0.00 0.00 4.94
658 2232 7.039882 AGAAACACAACTATATCTAACCACGG 58.960 38.462 0.00 0.00 0.00 4.94
659 2233 5.272283 ACACAACTATATCTAACCACGGG 57.728 43.478 0.00 0.00 0.00 5.28
660 2234 4.713321 ACACAACTATATCTAACCACGGGT 59.287 41.667 0.00 0.00 37.65 5.28
662 2236 5.522460 CACAACTATATCTAACCACGGGTTG 59.478 44.000 15.93 0.00 46.35 3.77
670 2244 2.902846 CCACGGGTTGGTTCGCAA 60.903 61.111 0.00 0.00 41.10 4.85
671 2245 2.482333 CCACGGGTTGGTTCGCAAA 61.482 57.895 0.00 0.00 41.10 3.68
672 2246 1.433879 CACGGGTTGGTTCGCAAAA 59.566 52.632 0.00 0.00 0.00 2.44
673 2247 0.031449 CACGGGTTGGTTCGCAAAAT 59.969 50.000 0.00 0.00 0.00 1.82
674 2248 1.267261 CACGGGTTGGTTCGCAAAATA 59.733 47.619 0.00 0.00 0.00 1.40
675 2249 2.094957 CACGGGTTGGTTCGCAAAATAT 60.095 45.455 0.00 0.00 0.00 1.28
676 2250 2.094957 ACGGGTTGGTTCGCAAAATATG 60.095 45.455 0.00 0.00 0.00 1.78
677 2251 2.094957 CGGGTTGGTTCGCAAAATATGT 60.095 45.455 0.00 0.00 0.00 2.29
678 2252 3.612955 CGGGTTGGTTCGCAAAATATGTT 60.613 43.478 0.00 0.00 0.00 2.71
679 2253 4.311606 GGGTTGGTTCGCAAAATATGTTT 58.688 39.130 0.00 0.00 0.00 2.83
680 2254 5.471257 GGGTTGGTTCGCAAAATATGTTTA 58.529 37.500 0.00 0.00 0.00 2.01
681 2255 6.103330 GGGTTGGTTCGCAAAATATGTTTAT 58.897 36.000 0.00 0.00 0.00 1.40
682 2256 6.592220 GGGTTGGTTCGCAAAATATGTTTATT 59.408 34.615 0.00 0.00 0.00 1.40
683 2257 7.118535 GGGTTGGTTCGCAAAATATGTTTATTT 59.881 33.333 0.00 0.00 39.23 1.40
724 2298 0.110486 GGAGAAGTTGCTTCCCCACA 59.890 55.000 4.83 0.00 40.98 4.17
725 2299 1.272147 GGAGAAGTTGCTTCCCCACAT 60.272 52.381 4.83 0.00 40.98 3.21
726 2300 2.087646 GAGAAGTTGCTTCCCCACATC 58.912 52.381 5.38 0.00 40.98 3.06
727 2301 1.707427 AGAAGTTGCTTCCCCACATCT 59.293 47.619 5.38 0.00 40.98 2.90
728 2302 2.912956 AGAAGTTGCTTCCCCACATCTA 59.087 45.455 5.38 0.00 40.98 1.98
729 2303 3.054802 AGAAGTTGCTTCCCCACATCTAG 60.055 47.826 5.38 0.00 40.98 2.43
730 2304 2.269940 AGTTGCTTCCCCACATCTAGT 58.730 47.619 0.00 0.00 0.00 2.57
731 2305 5.396663 GAAGTTGCTTCCCCACATCTAGTG 61.397 50.000 0.00 0.00 39.86 2.74
732 2306 7.544229 GAAGTTGCTTCCCCACATCTAGTGA 62.544 48.000 0.00 0.00 41.22 3.41
733 2307 8.919721 GAAGTTGCTTCCCCACATCTAGTGAA 62.920 46.154 0.00 0.00 41.22 3.18
753 2344 0.605589 AAGTCTCAGGCCAGAACTCG 59.394 55.000 5.01 0.00 0.00 4.18
1206 3028 4.157120 GGCGGCGTCCAGGTATGT 62.157 66.667 9.37 0.00 0.00 2.29
1301 3139 7.718334 TGTATTCAGTGAGATCTTGGTAGAA 57.282 36.000 0.00 0.00 33.20 2.10
1309 3147 6.378848 AGTGAGATCTTGGTAGAACTCTTACC 59.621 42.308 11.91 0.00 45.59 2.85
1313 3151 8.896722 AGATCTTGGTAGAACTCTTACCTTTA 57.103 34.615 0.00 0.00 35.04 1.85
1314 3152 9.322769 AGATCTTGGTAGAACTCTTACCTTTAA 57.677 33.333 0.00 0.00 35.04 1.52
1315 3153 9.939802 GATCTTGGTAGAACTCTTACCTTTAAA 57.060 33.333 3.40 0.00 35.04 1.52
1344 3182 8.989653 AAAATCTTTCTACTGTACTGCTACTC 57.010 34.615 0.00 0.00 0.00 2.59
1345 3183 7.948034 AATCTTTCTACTGTACTGCTACTCT 57.052 36.000 0.00 0.00 0.00 3.24
1346 3184 9.463902 AAATCTTTCTACTGTACTGCTACTCTA 57.536 33.333 0.00 0.00 0.00 2.43
1347 3185 7.846644 TCTTTCTACTGTACTGCTACTCTAC 57.153 40.000 0.00 0.00 0.00 2.59
1369 3207 4.637534 ACTTGAAATGTATGATTGCTCGCT 59.362 37.500 0.00 0.00 0.00 4.93
1379 3217 1.131883 GATTGCTCGCTGAATTGCTGT 59.868 47.619 0.00 0.00 0.00 4.40
1420 3258 1.539929 GCTCAGATGGTGGGAATCTCG 60.540 57.143 0.00 0.00 31.92 4.04
1426 3264 2.066999 GGTGGGAATCTCGGGCTCT 61.067 63.158 0.00 0.00 0.00 4.09
1436 3274 0.388659 CTCGGGCTCTGAGGATCTTG 59.611 60.000 6.83 0.00 34.92 3.02
1457 3295 1.611491 TCCGTCACAGCATCGCATATA 59.389 47.619 0.00 0.00 0.00 0.86
1537 3375 7.334844 AGTTTTGTACTGCTTTTTAGCTTCT 57.665 32.000 0.00 0.00 35.19 2.85
1540 3378 6.935741 TTGTACTGCTTTTTAGCTTCTTGA 57.064 33.333 0.00 0.00 35.49 3.02
1556 3394 1.134175 CTTGACGTGGGTTTGCTTTGT 59.866 47.619 0.00 0.00 0.00 2.83
1610 3448 4.656112 TCTGTTCTCCTTTTCTCCTGTTCT 59.344 41.667 0.00 0.00 0.00 3.01
1641 3480 3.060138 CAGTGCGCTGTACGTTTTTAGAA 60.060 43.478 19.30 0.00 46.11 2.10
1708 3547 1.547372 CTGCAGTTTTTCCCCCATCAG 59.453 52.381 5.25 0.00 0.00 2.90
1729 3568 3.117663 AGTTTCAGGTTGTGTGGGTGTAT 60.118 43.478 0.00 0.00 0.00 2.29
1746 4178 5.163652 GGGTGTATGTTCCTTATGCAACTTC 60.164 44.000 0.00 0.00 29.99 3.01
1755 4187 4.870426 TCCTTATGCAACTTCGTGAAGATC 59.130 41.667 16.10 5.38 40.79 2.75
1799 4231 5.824421 AGATGTTTCCTTCTTGGTCATGAT 58.176 37.500 0.00 0.00 37.07 2.45
1863 4297 2.019984 CAACTGCAATAGAGGGAAGCC 58.980 52.381 0.00 0.00 0.00 4.35
1885 4321 4.438200 CCGCAATGGTTAAGAAATAACGCT 60.438 41.667 0.00 0.00 44.06 5.07
1956 4392 4.510340 GGTGTACTTTGTACCTGACTGTTG 59.490 45.833 5.55 0.00 0.00 3.33
1984 4420 0.850100 TTGGAAAGGAGCTCACCCAA 59.150 50.000 17.19 17.89 0.00 4.12
2081 4517 0.527565 GCTTTGCATGGGGTGTACAG 59.472 55.000 0.00 0.00 0.00 2.74
2256 4692 8.759481 TTGGTTATTGATCAATTATGTAGCCA 57.241 30.769 25.26 19.79 32.50 4.75
2257 4693 8.165239 TGGTTATTGATCAATTATGTAGCCAC 57.835 34.615 25.26 8.82 32.50 5.01
2258 4694 7.998383 TGGTTATTGATCAATTATGTAGCCACT 59.002 33.333 25.26 0.50 32.50 4.00
2259 4695 8.507249 GGTTATTGATCAATTATGTAGCCACTC 58.493 37.037 25.26 1.70 32.50 3.51
2260 4696 9.277783 GTTATTGATCAATTATGTAGCCACTCT 57.722 33.333 25.26 0.00 32.50 3.24
2261 4697 9.851686 TTATTGATCAATTATGTAGCCACTCTT 57.148 29.630 25.26 0.00 32.50 2.85
2262 4698 7.792374 TTGATCAATTATGTAGCCACTCTTC 57.208 36.000 3.38 0.00 0.00 2.87
2263 4699 7.129457 TGATCAATTATGTAGCCACTCTTCT 57.871 36.000 0.00 0.00 0.00 2.85
2264 4700 8.250143 TGATCAATTATGTAGCCACTCTTCTA 57.750 34.615 0.00 0.00 0.00 2.10
2265 4701 8.704668 TGATCAATTATGTAGCCACTCTTCTAA 58.295 33.333 0.00 0.00 0.00 2.10
2266 4702 9.717942 GATCAATTATGTAGCCACTCTTCTAAT 57.282 33.333 0.00 0.00 0.00 1.73
2268 4704 9.547753 TCAATTATGTAGCCACTCTTCTAATTC 57.452 33.333 0.00 0.00 0.00 2.17
2269 4705 9.553064 CAATTATGTAGCCACTCTTCTAATTCT 57.447 33.333 0.00 0.00 0.00 2.40
2270 4706 9.771534 AATTATGTAGCCACTCTTCTAATTCTC 57.228 33.333 0.00 0.00 0.00 2.87
2271 4707 6.798427 ATGTAGCCACTCTTCTAATTCTCA 57.202 37.500 0.00 0.00 0.00 3.27
2272 4708 6.798427 TGTAGCCACTCTTCTAATTCTCAT 57.202 37.500 0.00 0.00 0.00 2.90
2273 4709 6.577103 TGTAGCCACTCTTCTAATTCTCATG 58.423 40.000 0.00 0.00 0.00 3.07
2274 4710 5.690464 AGCCACTCTTCTAATTCTCATGT 57.310 39.130 0.00 0.00 0.00 3.21
2275 4711 6.059787 AGCCACTCTTCTAATTCTCATGTT 57.940 37.500 0.00 0.00 0.00 2.71
2276 4712 6.479884 AGCCACTCTTCTAATTCTCATGTTT 58.520 36.000 0.00 0.00 0.00 2.83
2277 4713 7.624549 AGCCACTCTTCTAATTCTCATGTTTA 58.375 34.615 0.00 0.00 0.00 2.01
2278 4714 8.270744 AGCCACTCTTCTAATTCTCATGTTTAT 58.729 33.333 0.00 0.00 0.00 1.40
2279 4715 8.897752 GCCACTCTTCTAATTCTCATGTTTATT 58.102 33.333 0.00 0.00 0.00 1.40
2284 4720 9.958180 TCTTCTAATTCTCATGTTTATTGACCA 57.042 29.630 0.00 0.00 0.00 4.02
2296 4732 7.946381 TGTTTATTGACCAATTATGTAGCCA 57.054 32.000 0.17 0.00 32.50 4.75
2349 4785 7.661536 ATTATGTAGCCACTCTTCTACAAGA 57.338 36.000 6.24 0.00 45.47 3.02
2356 4792 7.010339 AGCCACTCTTCTACAAGATTAACTT 57.990 36.000 0.00 0.00 38.02 2.66
2373 4809 6.899393 TTAACTTGTTTCATCTGATTGCCT 57.101 33.333 0.00 0.00 0.00 4.75
2520 4958 4.466370 ACTTACATGGCTTGCAGACTACTA 59.534 41.667 0.00 0.00 0.00 1.82
2521 4959 3.981071 ACATGGCTTGCAGACTACTAA 57.019 42.857 0.00 0.00 0.00 2.24
2523 4961 4.446371 ACATGGCTTGCAGACTACTAATC 58.554 43.478 0.00 0.00 0.00 1.75
2615 5053 2.597510 GTGCACCTTGTCCCCCAC 60.598 66.667 5.22 0.00 0.00 4.61
2617 5055 4.678743 GCACCTTGTCCCCCACCC 62.679 72.222 0.00 0.00 0.00 4.61
2687 5125 5.481473 ACTGCCCACAATGACTAAATGAAAT 59.519 36.000 0.00 0.00 0.00 2.17
2717 5155 1.442769 CAACCCATTGACGAGGACTG 58.557 55.000 0.00 0.00 38.15 3.51
2737 5175 5.989477 ACTGCCACTACAAATTCTATGCTA 58.011 37.500 0.00 0.00 0.00 3.49
2760 5198 1.280746 CACAAAGCACTGAGTGGCG 59.719 57.895 15.24 0.00 33.64 5.69
2766 5204 0.898320 AGCACTGAGTGGCGTCTATT 59.102 50.000 15.24 0.00 33.64 1.73
2807 5245 1.279846 CCCTTGGCGGTAACCTTCTTA 59.720 52.381 0.00 0.00 0.00 2.10
2856 5294 1.746787 TCTTCATACGGCGTTCTAGCA 59.253 47.619 21.24 0.00 39.27 3.49
2957 5397 4.065110 GCTTTGGCTTCACGTCCT 57.935 55.556 0.00 0.00 35.22 3.85
2961 5401 2.095718 GCTTTGGCTTCACGTCCTAAAG 60.096 50.000 0.00 0.00 35.22 1.85
2971 5411 4.055360 TCACGTCCTAAAGAACACATGTG 58.945 43.478 24.25 24.25 0.00 3.21
2973 5413 2.805671 CGTCCTAAAGAACACATGTGCA 59.194 45.455 25.68 3.52 0.00 4.57
3004 5461 4.964593 ACGCTCTTGTTTCTAAACCCTTA 58.035 39.130 3.27 0.00 38.11 2.69
3063 5520 1.382009 TTGATGCCATGCCCATGCT 60.382 52.632 2.75 0.00 37.49 3.79
3185 5642 0.602638 CCACGGAAGCTTGTACTGCA 60.603 55.000 2.10 0.00 0.00 4.41
3189 5646 3.062639 CACGGAAGCTTGTACTGCATAAG 59.937 47.826 2.10 0.72 0.00 1.73
3234 5691 1.995376 TGTCCATAGGCTGCTCGATA 58.005 50.000 0.00 0.00 0.00 2.92
3483 5949 5.069119 GGGCCAAAAGGGATAATTAACTCAG 59.931 44.000 4.39 0.00 40.01 3.35
3611 6084 9.840427 GCACAATTTACTATTCAGTATGTTGTT 57.160 29.630 10.26 0.19 40.04 2.83
3623 6096 6.220930 TCAGTATGTTGTTGTCCTTCAGTAC 58.779 40.000 0.00 0.00 37.40 2.73
3662 6135 4.879598 TCTTTTAAGAGTCACTTCGGGAC 58.120 43.478 0.00 0.00 39.72 4.46
3733 6206 2.988010 TCATCGGATTTGACTCTGGG 57.012 50.000 0.00 0.00 0.00 4.45
3758 6231 9.882996 GGATTATGTGATGTGTAATGTGTTATG 57.117 33.333 0.00 0.00 0.00 1.90
3845 6318 3.044235 TGAGCAGTTACTGGTGATGTG 57.956 47.619 22.18 0.00 42.53 3.21
3852 6325 2.672961 TACTGGTGATGTGCTACAGC 57.327 50.000 0.00 0.00 42.50 4.40
3912 6385 3.636153 AATAGAGCTGTTCCCCTGTTC 57.364 47.619 0.00 0.00 0.00 3.18
4085 6603 5.336102 ACAGAATTTCCCAAATCCATCACT 58.664 37.500 0.00 0.00 0.00 3.41
4107 6625 2.300437 GAGTGGTGCCTAGACACTTCTT 59.700 50.000 9.18 0.00 44.79 2.52
4239 6763 6.572519 TCATGTCCATTTTAAGCATAAAGGC 58.427 36.000 0.00 0.00 32.80 4.35
4278 6802 4.322057 AATTTGTTATCTGCCCAGGTCT 57.678 40.909 0.00 0.00 0.00 3.85
4414 6938 4.102524 TCACCAAATCTGTTGTAGGACACT 59.897 41.667 0.00 0.00 0.00 3.55
4445 6969 1.523484 TGTGCGTGCATGTGTGAGT 60.523 52.632 7.93 0.00 0.00 3.41
4465 6989 1.109323 GCTTGCTCTGTGGGTTGGTT 61.109 55.000 0.00 0.00 0.00 3.67
4477 7001 0.898326 GGTTGGTTCATGGGTGGGTC 60.898 60.000 0.00 0.00 0.00 4.46
4585 7109 5.815581 TGGTGTTATTTGCCTACTCTTGAT 58.184 37.500 0.00 0.00 0.00 2.57
4588 7112 6.374333 GGTGTTATTTGCCTACTCTTGATGAA 59.626 38.462 0.00 0.00 0.00 2.57
4609 7133 6.629128 TGAACAAATGACAAAACACATCACT 58.371 32.000 0.00 0.00 0.00 3.41
4614 7138 7.063308 ACAAATGACAAAACACATCACTGTTTC 59.937 33.333 0.00 0.00 42.36 2.78
4706 7230 9.190858 TGTGCTATCAACACATTAAAATGTTTC 57.809 29.630 5.60 0.00 46.95 2.78
4721 7245 9.995003 TTAAAATGTTTCTTTTGTATCATGGCT 57.005 25.926 0.00 0.00 31.15 4.75
4739 7263 6.211184 TCATGGCTAAAATGTGAAATTCCTGT 59.789 34.615 0.00 0.00 0.00 4.00
4742 7266 6.211184 TGGCTAAAATGTGAAATTCCTGTGAT 59.789 34.615 0.00 0.00 0.00 3.06
4777 7301 4.562143 GCCTGAGATTTTGCTGTTTCCATT 60.562 41.667 0.00 0.00 0.00 3.16
4793 7317 7.323420 TGTTTCCATTGTGTTGTTTGAATACA 58.677 30.769 0.00 0.00 0.00 2.29
4867 7391 4.717280 AGGAGGTTAAGGATTGACGAAGAT 59.283 41.667 0.00 0.00 35.10 2.40
5000 7536 0.037326 AGCGATGAGGAAGCAAACGA 60.037 50.000 0.00 0.00 0.00 3.85
5063 7599 1.451504 CAGCTCCAGTGGGTGTGAA 59.548 57.895 9.92 0.00 34.93 3.18
5090 7626 1.302511 CGCAAGCCTGGGTTGTAGT 60.303 57.895 32.09 0.72 42.18 2.73
5092 7628 0.537371 GCAAGCCTGGGTTGTAGTGT 60.537 55.000 32.09 0.00 42.18 3.55
5188 7724 2.680352 TCACCGTCTGGAGCCTCC 60.680 66.667 2.98 2.98 39.21 4.30
5198 7734 2.043852 GAGCCTCCGAGGAGTGGA 60.044 66.667 19.33 0.00 37.67 4.02
5297 7833 7.979537 CCACTATTAGTAGCTGTACATTGTTGA 59.020 37.037 0.00 0.00 0.00 3.18
5298 7834 9.025020 CACTATTAGTAGCTGTACATTGTTGAG 57.975 37.037 0.00 0.00 0.00 3.02
5329 7865 5.072741 AGGAAAGCAGACAAAGCTGAATTA 58.927 37.500 0.00 0.00 42.53 1.40
5332 7868 7.394359 AGGAAAGCAGACAAAGCTGAATTATTA 59.606 33.333 0.00 0.00 42.53 0.98
5339 7875 6.381133 AGACAAAGCTGAATTATTAAAGGGGG 59.619 38.462 0.00 0.00 0.00 5.40
5418 7954 2.814336 ACTTTGTGCGAGATCCCTTTTC 59.186 45.455 0.00 0.00 0.00 2.29
5467 8003 4.764050 TTTTTGCCATCTAGGATCCGTA 57.236 40.909 5.98 0.00 41.22 4.02
5518 8054 5.804692 TGTTTACGTGATCAACTTTGTGT 57.195 34.783 0.00 0.00 0.00 3.72
5556 8093 2.950309 ACATAGACTGCCACTACCTACG 59.050 50.000 0.00 0.00 0.00 3.51
5569 8107 2.632987 ACCTACGACCACAAAGCTTT 57.367 45.000 5.69 5.69 0.00 3.51
5570 8108 2.490991 ACCTACGACCACAAAGCTTTC 58.509 47.619 9.23 0.00 0.00 2.62
5571 8109 2.104281 ACCTACGACCACAAAGCTTTCT 59.896 45.455 9.23 0.00 0.00 2.52
5574 8112 4.036380 CCTACGACCACAAAGCTTTCTTTT 59.964 41.667 9.23 0.00 40.35 2.27
5577 8115 3.791353 CGACCACAAAGCTTTCTTTTGTC 59.209 43.478 9.23 10.51 40.35 3.18
5586 8124 3.625764 AGCTTTCTTTTGTCGCACTGTTA 59.374 39.130 0.00 0.00 0.00 2.41
5597 8135 5.448438 TGTCGCACTGTTATTTGATTTCAC 58.552 37.500 0.00 0.00 0.00 3.18
5659 8197 1.891150 CCCTGAGCTTGAAGCATTGTT 59.109 47.619 20.45 0.00 45.56 2.83
5684 8222 9.781834 TTTGTTTTGATTGTACAGTAGAAACAG 57.218 29.630 20.66 0.00 37.16 3.16
5712 8251 5.458595 AGAAGGGTCTTTCCAATGAGTTTT 58.541 37.500 0.00 0.00 38.11 2.43
5719 8258 7.139392 GGTCTTTCCAATGAGTTTTAGTCAAC 58.861 38.462 0.00 0.00 31.65 3.18
5723 8265 9.364989 CTTTCCAATGAGTTTTAGTCAACAAAA 57.635 29.630 0.00 0.00 30.32 2.44
5766 8308 5.347124 TCCTAGACCTTAAACCCTGATTCA 58.653 41.667 0.00 0.00 0.00 2.57
5771 8313 4.514401 ACCTTAAACCCTGATTCATCGAC 58.486 43.478 0.00 0.00 0.00 4.20
5791 8333 0.899720 ACCCCTGCATTGCTTTCATG 59.100 50.000 10.49 0.00 0.00 3.07
5833 8375 4.999950 CGATGATCCTCAAGAATAAAGGGG 59.000 45.833 0.00 0.00 0.00 4.79
5836 8378 4.540099 TGATCCTCAAGAATAAAGGGGTGT 59.460 41.667 0.00 0.00 0.00 4.16
5845 8387 4.646492 AGAATAAAGGGGTGTGATGAATGC 59.354 41.667 0.00 0.00 0.00 3.56
5860 8402 4.789977 TGCGACCTTAAGCAGCAA 57.210 50.000 13.01 1.32 38.59 3.91
5861 8403 3.248043 TGCGACCTTAAGCAGCAAT 57.752 47.368 13.01 0.00 38.59 3.56
5869 8411 4.248058 ACCTTAAGCAGCAATGATTTTGC 58.752 39.130 0.00 2.17 45.22 3.68
5906 8448 1.339929 GGTCCAACAAACCATGACACC 59.660 52.381 0.00 0.00 36.75 4.16
5920 8462 2.560504 TGACACCGCAATCATACATCC 58.439 47.619 0.00 0.00 0.00 3.51
5924 8466 4.016444 ACACCGCAATCATACATCCTTTT 58.984 39.130 0.00 0.00 0.00 2.27
5926 8468 4.799949 CACCGCAATCATACATCCTTTTTG 59.200 41.667 0.00 0.00 0.00 2.44
5927 8469 3.798337 CCGCAATCATACATCCTTTTTGC 59.202 43.478 0.00 0.00 35.76 3.68
5929 8471 5.104374 CGCAATCATACATCCTTTTTGCTT 58.896 37.500 0.00 0.00 36.68 3.91
5931 8473 6.454583 CGCAATCATACATCCTTTTTGCTTTG 60.455 38.462 0.00 0.00 36.68 2.77
5933 8475 5.726980 TCATACATCCTTTTTGCTTTGCT 57.273 34.783 0.00 0.00 0.00 3.91
5934 8476 6.100404 TCATACATCCTTTTTGCTTTGCTT 57.900 33.333 0.00 0.00 0.00 3.91
5936 8478 7.665690 TCATACATCCTTTTTGCTTTGCTTTA 58.334 30.769 0.00 0.00 0.00 1.85
5946 8488 4.503741 TGCTTTGCTTTATTCCACACTC 57.496 40.909 0.00 0.00 0.00 3.51
5958 8500 1.431633 TCCACACTCTTAGGACCCTCA 59.568 52.381 0.00 0.00 0.00 3.86
5966 8508 4.026744 CTCTTAGGACCCTCACTCATTCA 58.973 47.826 0.00 0.00 0.00 2.57
5967 8509 4.026744 TCTTAGGACCCTCACTCATTCAG 58.973 47.826 0.00 0.00 0.00 3.02
6014 8556 5.983333 ATTTATCTCCATCCCTTCACAGT 57.017 39.130 0.00 0.00 0.00 3.55
6016 8558 1.279496 TCTCCATCCCTTCACAGTGG 58.721 55.000 0.00 0.00 0.00 4.00
6033 8575 6.096705 TCACAGTGGAAAAACTCATGTGAAAT 59.903 34.615 0.00 0.00 31.42 2.17
6044 8586 9.927081 AAAACTCATGTGAAATATAATCCTCCT 57.073 29.630 0.94 0.00 0.00 3.69
6059 8601 4.921644 TCCTCCTAAACCTTAAACCCTG 57.078 45.455 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.885912 TGTTTTGCACTTTCTTCTAAGGAGT 59.114 36.000 0.00 0.00 0.00 3.85
2 3 6.377327 TGTTTTGCACTTTCTTCTAAGGAG 57.623 37.500 0.00 0.00 0.00 3.69
3 4 6.767524 TTGTTTTGCACTTTCTTCTAAGGA 57.232 33.333 0.00 0.00 0.00 3.36
4 5 8.567948 TCTATTGTTTTGCACTTTCTTCTAAGG 58.432 33.333 0.00 0.00 0.00 2.69
5 6 9.604626 CTCTATTGTTTTGCACTTTCTTCTAAG 57.395 33.333 0.00 0.00 0.00 2.18
6 7 9.120538 ACTCTATTGTTTTGCACTTTCTTCTAA 57.879 29.630 0.00 0.00 0.00 2.10
7 8 8.677148 ACTCTATTGTTTTGCACTTTCTTCTA 57.323 30.769 0.00 0.00 0.00 2.10
8 9 7.573968 ACTCTATTGTTTTGCACTTTCTTCT 57.426 32.000 0.00 0.00 0.00 2.85
9 10 8.560374 AGTACTCTATTGTTTTGCACTTTCTTC 58.440 33.333 0.00 0.00 0.00 2.87
10 11 8.451908 AGTACTCTATTGTTTTGCACTTTCTT 57.548 30.769 0.00 0.00 0.00 2.52
11 12 8.451908 AAGTACTCTATTGTTTTGCACTTTCT 57.548 30.769 0.00 0.00 0.00 2.52
12 13 8.342634 TGAAGTACTCTATTGTTTTGCACTTTC 58.657 33.333 0.00 0.00 0.00 2.62
13 14 8.220755 TGAAGTACTCTATTGTTTTGCACTTT 57.779 30.769 0.00 0.00 0.00 2.66
14 15 7.801716 TGAAGTACTCTATTGTTTTGCACTT 57.198 32.000 0.00 0.00 0.00 3.16
15 16 7.801716 TTGAAGTACTCTATTGTTTTGCACT 57.198 32.000 0.00 0.00 0.00 4.40
16 17 8.850454 TTTTGAAGTACTCTATTGTTTTGCAC 57.150 30.769 0.00 0.00 0.00 4.57
49 50 9.692325 AGAGCCTATTTAGTTCAGATGATTTTT 57.308 29.630 0.00 0.00 0.00 1.94
52 53 9.995003 CTTAGAGCCTATTTAGTTCAGATGATT 57.005 33.333 0.00 0.00 0.00 2.57
53 54 8.093927 GCTTAGAGCCTATTTAGTTCAGATGAT 58.906 37.037 0.00 0.00 34.48 2.45
54 55 7.288852 AGCTTAGAGCCTATTTAGTTCAGATGA 59.711 37.037 0.00 0.00 43.77 2.92
55 56 7.384660 CAGCTTAGAGCCTATTTAGTTCAGATG 59.615 40.741 0.00 0.00 43.77 2.90
56 57 7.288852 TCAGCTTAGAGCCTATTTAGTTCAGAT 59.711 37.037 0.00 0.00 43.77 2.90
64 65 8.486210 TCTTTTCATCAGCTTAGAGCCTATTTA 58.514 33.333 0.00 0.00 43.77 1.40
70 71 4.940654 AGTTCTTTTCATCAGCTTAGAGCC 59.059 41.667 0.00 0.00 43.77 4.70
78 79 5.411053 AGTCTTGCTAGTTCTTTTCATCAGC 59.589 40.000 0.00 0.00 0.00 4.26
79 80 7.432350 AAGTCTTGCTAGTTCTTTTCATCAG 57.568 36.000 0.00 0.00 0.00 2.90
80 81 7.498900 TCAAAGTCTTGCTAGTTCTTTTCATCA 59.501 33.333 13.95 0.00 32.14 3.07
81 82 7.865707 TCAAAGTCTTGCTAGTTCTTTTCATC 58.134 34.615 13.95 0.00 32.14 2.92
82 83 7.521261 GCTCAAAGTCTTGCTAGTTCTTTTCAT 60.521 37.037 13.95 0.00 32.14 2.57
83 84 6.238484 GCTCAAAGTCTTGCTAGTTCTTTTCA 60.238 38.462 13.95 7.19 32.14 2.69
84 85 6.017523 AGCTCAAAGTCTTGCTAGTTCTTTTC 60.018 38.462 13.95 9.21 33.64 2.29
85 86 5.825151 AGCTCAAAGTCTTGCTAGTTCTTTT 59.175 36.000 13.95 2.63 33.64 2.27
108 109 6.719829 ACCCTGAATAAACTTCCACCTAAAAG 59.280 38.462 0.00 0.00 0.00 2.27
111 112 5.550403 AGACCCTGAATAAACTTCCACCTAA 59.450 40.000 0.00 0.00 0.00 2.69
149 150 5.794894 AGCATGGGTTAGGACTAATAATCG 58.205 41.667 0.00 0.00 0.00 3.34
151 152 6.306987 CCAAGCATGGGTTAGGACTAATAAT 58.693 40.000 0.00 0.00 43.51 1.28
171 172 8.603242 ACTACTAATTTTCACTACACACCAAG 57.397 34.615 0.00 0.00 0.00 3.61
214 215 9.528018 GTGGTATGAAATGAAAGTTTGAGAAAA 57.472 29.630 0.00 0.00 0.00 2.29
242 243 4.082245 CACATGTTTGGTTAGGTGGGAATC 60.082 45.833 0.00 0.00 0.00 2.52
277 278 9.883142 CTTCCATCTTTCTCTTTTCATACTACT 57.117 33.333 0.00 0.00 0.00 2.57
278 279 9.877178 TCTTCCATCTTTCTCTTTTCATACTAC 57.123 33.333 0.00 0.00 0.00 2.73
281 282 8.672815 CCTTCTTCCATCTTTCTCTTTTCATAC 58.327 37.037 0.00 0.00 0.00 2.39
282 283 7.337942 GCCTTCTTCCATCTTTCTCTTTTCATA 59.662 37.037 0.00 0.00 0.00 2.15
283 284 6.152492 GCCTTCTTCCATCTTTCTCTTTTCAT 59.848 38.462 0.00 0.00 0.00 2.57
284 285 5.474876 GCCTTCTTCCATCTTTCTCTTTTCA 59.525 40.000 0.00 0.00 0.00 2.69
313 1883 5.440610 ACCTCGATTTCTTATGGCTTGATT 58.559 37.500 0.00 0.00 0.00 2.57
339 1910 4.405358 TCTTGGTTTCTGTGGCTTGATTTT 59.595 37.500 0.00 0.00 0.00 1.82
343 1914 2.727123 TCTTGGTTTCTGTGGCTTGA 57.273 45.000 0.00 0.00 0.00 3.02
374 1945 8.472413 ACATCAGATTTTCAACATTCCCATAAG 58.528 33.333 0.00 0.00 0.00 1.73
378 1949 5.106197 CGACATCAGATTTTCAACATTCCCA 60.106 40.000 0.00 0.00 0.00 4.37
388 1959 9.007252 CAGATTTGATTTCGACATCAGATTTTC 57.993 33.333 16.14 7.32 34.59 2.29
397 1968 7.381766 TGAATGTCAGATTTGATTTCGACAT 57.618 32.000 0.00 0.00 43.87 3.06
417 1989 4.641989 GCAACATAACTCACCATCCTGAAT 59.358 41.667 0.00 0.00 0.00 2.57
421 1993 3.347216 GTGCAACATAACTCACCATCCT 58.653 45.455 0.00 0.00 36.32 3.24
426 1998 1.128692 GCTCGTGCAACATAACTCACC 59.871 52.381 4.26 0.00 39.41 4.02
439 2011 0.730494 GAAAACTGGCATGCTCGTGC 60.730 55.000 18.92 1.71 44.31 5.34
440 2012 0.877071 AGAAAACTGGCATGCTCGTG 59.123 50.000 18.92 7.84 0.00 4.35
441 2013 1.537202 GAAGAAAACTGGCATGCTCGT 59.463 47.619 18.92 11.95 0.00 4.18
453 2027 5.912528 CAAATCATGCTTGCTGAAGAAAAC 58.087 37.500 0.00 0.00 0.00 2.43
485 2059 0.033109 AAGAATGGCAGGCCTAACCC 60.033 55.000 18.98 13.96 40.58 4.11
489 2063 4.649218 GGATTTTTAAGAATGGCAGGCCTA 59.351 41.667 3.98 0.00 36.94 3.93
492 2066 3.130340 TCGGATTTTTAAGAATGGCAGGC 59.870 43.478 0.00 0.00 0.00 4.85
493 2067 4.672409 GTCGGATTTTTAAGAATGGCAGG 58.328 43.478 0.00 0.00 0.00 4.85
494 2068 4.142687 ACGTCGGATTTTTAAGAATGGCAG 60.143 41.667 0.00 0.00 0.00 4.85
497 2071 5.350365 TCTGACGTCGGATTTTTAAGAATGG 59.650 40.000 23.11 0.00 0.00 3.16
525 2099 8.873830 CATCTGGTCGATAAAATAATTCGCTAT 58.126 33.333 0.00 0.00 33.08 2.97
543 2117 9.748708 TTGCTTTTATATATTTTGCATCTGGTC 57.251 29.630 0.00 0.00 0.00 4.02
585 2159 3.678072 GCTTGCGTCTGTACTGATGTAAA 59.322 43.478 20.28 14.85 29.76 2.01
586 2160 3.250744 GCTTGCGTCTGTACTGATGTAA 58.749 45.455 19.27 19.27 0.00 2.41
587 2161 2.230266 TGCTTGCGTCTGTACTGATGTA 59.770 45.455 19.48 14.28 0.00 2.29
588 2162 1.000843 TGCTTGCGTCTGTACTGATGT 59.999 47.619 19.48 0.00 0.00 3.06
589 2163 1.713597 TGCTTGCGTCTGTACTGATG 58.286 50.000 15.57 15.57 0.00 3.07
590 2164 2.094026 TGATGCTTGCGTCTGTACTGAT 60.094 45.455 14.77 0.00 0.00 2.90
591 2165 1.272212 TGATGCTTGCGTCTGTACTGA 59.728 47.619 14.77 0.00 0.00 3.41
592 2166 1.657594 CTGATGCTTGCGTCTGTACTG 59.342 52.381 14.77 0.00 0.00 2.74
593 2167 1.546029 TCTGATGCTTGCGTCTGTACT 59.454 47.619 14.77 0.00 0.00 2.73
594 2168 1.996292 TCTGATGCTTGCGTCTGTAC 58.004 50.000 14.77 0.00 0.00 2.90
595 2169 2.029020 AGTTCTGATGCTTGCGTCTGTA 60.029 45.455 14.77 6.65 0.00 2.74
596 2170 1.151668 GTTCTGATGCTTGCGTCTGT 58.848 50.000 14.77 0.00 0.00 3.41
597 2171 1.436600 AGTTCTGATGCTTGCGTCTG 58.563 50.000 14.77 13.97 0.00 3.51
598 2172 2.175878 AAGTTCTGATGCTTGCGTCT 57.824 45.000 14.77 0.00 0.00 4.18
599 2173 4.151798 GTTTAAGTTCTGATGCTTGCGTC 58.848 43.478 7.79 7.79 0.00 5.19
600 2174 3.363970 CGTTTAAGTTCTGATGCTTGCGT 60.364 43.478 5.58 0.00 0.00 5.24
601 2175 3.155998 CGTTTAAGTTCTGATGCTTGCG 58.844 45.455 5.58 0.00 0.00 4.85
602 2176 2.911102 GCGTTTAAGTTCTGATGCTTGC 59.089 45.455 5.58 0.00 0.00 4.01
603 2177 4.410492 AGCGTTTAAGTTCTGATGCTTG 57.590 40.909 5.58 0.00 30.62 4.01
604 2178 6.403636 CCATTAGCGTTTAAGTTCTGATGCTT 60.404 38.462 5.44 1.66 36.00 3.91
605 2179 5.065218 CCATTAGCGTTTAAGTTCTGATGCT 59.935 40.000 5.45 5.45 37.97 3.79
606 2180 5.064707 TCCATTAGCGTTTAAGTTCTGATGC 59.935 40.000 0.00 0.00 0.00 3.91
607 2181 6.662414 TCCATTAGCGTTTAAGTTCTGATG 57.338 37.500 0.00 0.00 0.00 3.07
608 2182 7.865706 ATTCCATTAGCGTTTAAGTTCTGAT 57.134 32.000 0.00 0.00 0.00 2.90
609 2183 8.255206 TCTATTCCATTAGCGTTTAAGTTCTGA 58.745 33.333 0.00 0.00 0.00 3.27
610 2184 8.420374 TCTATTCCATTAGCGTTTAAGTTCTG 57.580 34.615 0.00 0.00 0.00 3.02
611 2185 9.444600 TTTCTATTCCATTAGCGTTTAAGTTCT 57.555 29.630 0.00 0.00 0.00 3.01
612 2186 9.486857 GTTTCTATTCCATTAGCGTTTAAGTTC 57.513 33.333 0.00 0.00 0.00 3.01
613 2187 9.005777 TGTTTCTATTCCATTAGCGTTTAAGTT 57.994 29.630 0.00 0.00 0.00 2.66
614 2188 8.448615 GTGTTTCTATTCCATTAGCGTTTAAGT 58.551 33.333 0.00 0.00 0.00 2.24
615 2189 8.447833 TGTGTTTCTATTCCATTAGCGTTTAAG 58.552 33.333 0.00 0.00 0.00 1.85
616 2190 8.325421 TGTGTTTCTATTCCATTAGCGTTTAA 57.675 30.769 0.00 0.00 0.00 1.52
617 2191 7.908827 TGTGTTTCTATTCCATTAGCGTTTA 57.091 32.000 0.00 0.00 0.00 2.01
618 2192 6.811253 TGTGTTTCTATTCCATTAGCGTTT 57.189 33.333 0.00 0.00 0.00 3.60
619 2193 6.430000 AGTTGTGTTTCTATTCCATTAGCGTT 59.570 34.615 0.00 0.00 0.00 4.84
620 2194 5.938125 AGTTGTGTTTCTATTCCATTAGCGT 59.062 36.000 0.00 0.00 0.00 5.07
621 2195 6.422776 AGTTGTGTTTCTATTCCATTAGCG 57.577 37.500 0.00 0.00 0.00 4.26
631 2205 9.745880 CGTGGTTAGATATAGTTGTGTTTCTAT 57.254 33.333 0.00 0.00 0.00 1.98
632 2206 8.192774 CCGTGGTTAGATATAGTTGTGTTTCTA 58.807 37.037 0.00 0.00 0.00 2.10
633 2207 7.039882 CCGTGGTTAGATATAGTTGTGTTTCT 58.960 38.462 0.00 0.00 0.00 2.52
634 2208 6.257193 CCCGTGGTTAGATATAGTTGTGTTTC 59.743 42.308 0.00 0.00 0.00 2.78
635 2209 6.110707 CCCGTGGTTAGATATAGTTGTGTTT 58.889 40.000 0.00 0.00 0.00 2.83
636 2210 5.188359 ACCCGTGGTTAGATATAGTTGTGTT 59.812 40.000 0.00 0.00 27.29 3.32
637 2211 4.713321 ACCCGTGGTTAGATATAGTTGTGT 59.287 41.667 0.00 0.00 27.29 3.72
638 2212 5.272283 ACCCGTGGTTAGATATAGTTGTG 57.728 43.478 0.00 0.00 27.29 3.33
639 2213 5.395990 CCAACCCGTGGTTAGATATAGTTGT 60.396 44.000 7.83 0.00 45.01 3.32
640 2214 5.054477 CCAACCCGTGGTTAGATATAGTTG 58.946 45.833 7.83 0.00 45.01 3.16
641 2215 5.286267 CCAACCCGTGGTTAGATATAGTT 57.714 43.478 7.83 0.00 45.01 2.24
642 2216 4.950205 CCAACCCGTGGTTAGATATAGT 57.050 45.455 7.83 0.00 45.01 2.12
654 2228 0.031449 ATTTTGCGAACCAACCCGTG 59.969 50.000 0.00 0.00 31.97 4.94
655 2229 1.606903 TATTTTGCGAACCAACCCGT 58.393 45.000 0.00 0.00 31.97 5.28
656 2230 2.094957 ACATATTTTGCGAACCAACCCG 60.095 45.455 0.00 0.00 31.97 5.28
657 2231 3.586100 ACATATTTTGCGAACCAACCC 57.414 42.857 0.00 0.00 31.97 4.11
658 2232 7.589574 AATAAACATATTTTGCGAACCAACC 57.410 32.000 0.00 0.00 31.97 3.77
659 2233 9.312146 CAAAATAAACATATTTTGCGAACCAAC 57.688 29.630 16.57 0.00 44.93 3.77
674 2248 9.927668 CTGGTTCCATAAGTTCAAAATAAACAT 57.072 29.630 0.00 0.00 0.00 2.71
675 2249 9.137459 TCTGGTTCCATAAGTTCAAAATAAACA 57.863 29.630 0.00 0.00 0.00 2.83
676 2250 9.974980 TTCTGGTTCCATAAGTTCAAAATAAAC 57.025 29.630 0.00 0.00 0.00 2.01
678 2252 9.581289 TCTTCTGGTTCCATAAGTTCAAAATAA 57.419 29.630 13.86 0.00 0.00 1.40
679 2253 9.231297 CTCTTCTGGTTCCATAAGTTCAAAATA 57.769 33.333 13.86 0.00 0.00 1.40
680 2254 7.177392 CCTCTTCTGGTTCCATAAGTTCAAAAT 59.823 37.037 13.86 0.00 0.00 1.82
681 2255 6.490040 CCTCTTCTGGTTCCATAAGTTCAAAA 59.510 38.462 13.86 0.00 0.00 2.44
682 2256 6.003950 CCTCTTCTGGTTCCATAAGTTCAAA 58.996 40.000 13.86 0.00 0.00 2.69
683 2257 5.309543 TCCTCTTCTGGTTCCATAAGTTCAA 59.690 40.000 13.86 0.00 0.00 2.69
693 2267 3.669536 CAACTTCTCCTCTTCTGGTTCC 58.330 50.000 0.00 0.00 0.00 3.62
698 2272 3.333804 GGAAGCAACTTCTCCTCTTCTG 58.666 50.000 7.24 0.00 40.07 3.02
724 2298 3.840666 TGGCCTGAGACTTTTCACTAGAT 59.159 43.478 3.32 0.00 0.00 1.98
725 2299 3.239449 TGGCCTGAGACTTTTCACTAGA 58.761 45.455 3.32 0.00 0.00 2.43
726 2300 3.259374 TCTGGCCTGAGACTTTTCACTAG 59.741 47.826 8.48 0.00 0.00 2.57
727 2301 3.239449 TCTGGCCTGAGACTTTTCACTA 58.761 45.455 8.48 0.00 0.00 2.74
728 2302 2.050144 TCTGGCCTGAGACTTTTCACT 58.950 47.619 8.48 0.00 0.00 3.41
729 2303 2.550180 GTTCTGGCCTGAGACTTTTCAC 59.450 50.000 12.54 1.98 0.00 3.18
730 2304 2.439507 AGTTCTGGCCTGAGACTTTTCA 59.560 45.455 12.54 0.00 0.00 2.69
731 2305 3.070748 GAGTTCTGGCCTGAGACTTTTC 58.929 50.000 20.28 10.46 0.00 2.29
732 2306 2.548920 CGAGTTCTGGCCTGAGACTTTT 60.549 50.000 20.28 6.81 0.00 2.27
733 2307 1.001406 CGAGTTCTGGCCTGAGACTTT 59.999 52.381 20.28 7.31 0.00 2.66
734 2308 0.605589 CGAGTTCTGGCCTGAGACTT 59.394 55.000 20.28 7.56 0.00 3.01
735 2309 0.251386 TCGAGTTCTGGCCTGAGACT 60.251 55.000 19.77 19.77 0.00 3.24
743 2333 2.734673 CGCTGCTTCGAGTTCTGGC 61.735 63.158 0.00 0.00 0.00 4.85
753 2344 1.082690 CTCCTTCCTTTCGCTGCTTC 58.917 55.000 0.00 0.00 0.00 3.86
999 2794 2.499205 CTGGAGCCGCCGAACATA 59.501 61.111 0.00 0.00 40.66 2.29
1206 3028 1.202099 TACAGGGGGTTGCAATCCGA 61.202 55.000 22.37 2.40 0.00 4.55
1241 3070 1.005037 CGGAACTACTGGCAGCACA 60.005 57.895 15.89 0.00 0.00 4.57
1318 3156 9.425577 GAGTAGCAGTACAGTAGAAAGATTTTT 57.574 33.333 0.00 0.00 0.00 1.94
1319 3157 8.808092 AGAGTAGCAGTACAGTAGAAAGATTTT 58.192 33.333 0.00 0.00 0.00 1.82
1320 3158 8.356000 AGAGTAGCAGTACAGTAGAAAGATTT 57.644 34.615 0.00 0.00 0.00 2.17
1321 3159 7.948034 AGAGTAGCAGTACAGTAGAAAGATT 57.052 36.000 0.00 0.00 0.00 2.40
1322 3160 8.269317 AGTAGAGTAGCAGTACAGTAGAAAGAT 58.731 37.037 0.00 0.00 0.00 2.40
1323 3161 7.622713 AGTAGAGTAGCAGTACAGTAGAAAGA 58.377 38.462 0.00 0.00 0.00 2.52
1342 3180 7.562412 CGAGCAATCATACATTTCAAGTAGAG 58.438 38.462 0.00 0.00 0.00 2.43
1343 3181 6.018751 GCGAGCAATCATACATTTCAAGTAGA 60.019 38.462 0.00 0.00 0.00 2.59
1344 3182 6.018425 AGCGAGCAATCATACATTTCAAGTAG 60.018 38.462 0.00 0.00 0.00 2.57
1345 3183 5.817296 AGCGAGCAATCATACATTTCAAGTA 59.183 36.000 0.00 0.00 0.00 2.24
1346 3184 4.637534 AGCGAGCAATCATACATTTCAAGT 59.362 37.500 0.00 0.00 0.00 3.16
1347 3185 4.968181 CAGCGAGCAATCATACATTTCAAG 59.032 41.667 0.00 0.00 0.00 3.02
1369 3207 4.319694 CGAACTCATCAACACAGCAATTCA 60.320 41.667 0.00 0.00 0.00 2.57
1379 3217 2.820059 ACTGCTCGAACTCATCAACA 57.180 45.000 0.00 0.00 0.00 3.33
1404 3242 1.700042 GCCCGAGATTCCCACCATCT 61.700 60.000 0.00 0.00 33.42 2.90
1410 3248 1.001631 TCAGAGCCCGAGATTCCCA 59.998 57.895 0.00 0.00 0.00 4.37
1420 3258 0.467804 GGACAAGATCCTCAGAGCCC 59.532 60.000 0.00 0.00 45.22 5.19
1426 3264 1.546029 CTGTGACGGACAAGATCCTCA 59.454 52.381 0.00 0.00 46.69 3.86
1436 3274 0.527600 TATGCGATGCTGTGACGGAC 60.528 55.000 0.00 0.00 0.00 4.79
1457 3295 1.595382 GCCGCCATCTAATCGCAGT 60.595 57.895 0.00 0.00 0.00 4.40
1526 3364 3.547746 ACCCACGTCAAGAAGCTAAAAA 58.452 40.909 0.00 0.00 0.00 1.94
1537 3375 1.135257 CACAAAGCAAACCCACGTCAA 60.135 47.619 0.00 0.00 0.00 3.18
1540 3378 0.172352 CACACAAAGCAAACCCACGT 59.828 50.000 0.00 0.00 0.00 4.49
1641 3480 1.102978 GTCGCCTGCCAATACCAAAT 58.897 50.000 0.00 0.00 0.00 2.32
1708 3547 1.470051 ACACCCACACAACCTGAAAC 58.530 50.000 0.00 0.00 0.00 2.78
1746 4178 5.402568 CGGTGGACTAAATATGATCTTCACG 59.597 44.000 0.00 0.00 0.00 4.35
1755 4187 4.638421 TCTTTTGGCGGTGGACTAAATATG 59.362 41.667 0.00 0.00 0.00 1.78
1799 4231 1.670674 CGACTAGCTACGTTGCCCAAA 60.671 52.381 18.33 1.46 0.00 3.28
1843 4275 2.019984 GGCTTCCCTCTATTGCAGTTG 58.980 52.381 0.00 0.00 0.00 3.16
1863 4297 4.658071 AGCGTTATTTCTTAACCATTGCG 58.342 39.130 0.00 0.00 37.49 4.85
1885 4321 9.371136 CTTCTGAGTGACTAGCAAAATATGTTA 57.629 33.333 0.00 0.00 0.00 2.41
1937 4373 3.386486 CGCAACAGTCAGGTACAAAGTA 58.614 45.455 0.00 0.00 0.00 2.24
1956 4392 0.960861 CTCCTTTCCAAACCCTCCGC 60.961 60.000 0.00 0.00 0.00 5.54
1984 4420 9.086336 CACGAATTATCCACATTGCTTATTTTT 57.914 29.630 0.00 0.00 0.00 1.94
2065 4501 0.767998 TCACTGTACACCCCATGCAA 59.232 50.000 0.00 0.00 0.00 4.08
2081 4517 9.495572 CCTACCTTCTAATGGAAAATATCTCAC 57.504 37.037 0.00 0.00 33.07 3.51
2194 4630 9.824216 ACTCTAAAGATATACACCTGCCTTATA 57.176 33.333 0.00 0.00 0.00 0.98
2195 4631 8.728596 ACTCTAAAGATATACACCTGCCTTAT 57.271 34.615 0.00 0.00 0.00 1.73
2249 4685 6.155221 ACATGAGAATTAGAAGAGTGGCTACA 59.845 38.462 2.02 0.00 0.00 2.74
2250 4686 6.578023 ACATGAGAATTAGAAGAGTGGCTAC 58.422 40.000 0.00 0.00 0.00 3.58
2251 4687 6.798427 ACATGAGAATTAGAAGAGTGGCTA 57.202 37.500 0.00 0.00 0.00 3.93
2252 4688 5.690464 ACATGAGAATTAGAAGAGTGGCT 57.310 39.130 0.00 0.00 0.00 4.75
2253 4689 6.749923 AAACATGAGAATTAGAAGAGTGGC 57.250 37.500 0.00 0.00 0.00 5.01
2258 4694 9.958180 TGGTCAATAAACATGAGAATTAGAAGA 57.042 29.630 0.00 0.00 0.00 2.87
2268 4704 9.669353 GCTACATAATTGGTCAATAAACATGAG 57.331 33.333 0.00 2.07 0.00 2.90
2269 4705 8.629158 GGCTACATAATTGGTCAATAAACATGA 58.371 33.333 0.00 0.00 0.00 3.07
2270 4706 8.412456 TGGCTACATAATTGGTCAATAAACATG 58.588 33.333 0.00 0.00 0.00 3.21
2271 4707 8.413229 GTGGCTACATAATTGGTCAATAAACAT 58.587 33.333 0.00 0.00 0.00 2.71
2272 4708 7.613801 AGTGGCTACATAATTGGTCAATAAACA 59.386 33.333 2.02 0.00 0.00 2.83
2273 4709 7.996385 AGTGGCTACATAATTGGTCAATAAAC 58.004 34.615 2.02 0.00 0.00 2.01
2274 4710 8.052748 AGAGTGGCTACATAATTGGTCAATAAA 58.947 33.333 2.02 0.00 0.00 1.40
2275 4711 7.573710 AGAGTGGCTACATAATTGGTCAATAA 58.426 34.615 2.02 0.00 0.00 1.40
2276 4712 7.136822 AGAGTGGCTACATAATTGGTCAATA 57.863 36.000 2.02 0.00 0.00 1.90
2277 4713 6.006275 AGAGTGGCTACATAATTGGTCAAT 57.994 37.500 2.02 0.00 0.00 2.57
2278 4714 5.435686 AGAGTGGCTACATAATTGGTCAA 57.564 39.130 2.02 0.00 0.00 3.18
2279 4715 5.189736 AGAAGAGTGGCTACATAATTGGTCA 59.810 40.000 2.02 0.00 0.00 4.02
2280 4716 5.675538 AGAAGAGTGGCTACATAATTGGTC 58.324 41.667 2.02 0.00 0.00 4.02
2281 4717 5.700402 AGAAGAGTGGCTACATAATTGGT 57.300 39.130 2.02 0.00 0.00 3.67
2282 4718 8.682936 AATTAGAAGAGTGGCTACATAATTGG 57.317 34.615 2.02 0.00 0.00 3.16
2283 4719 9.553064 AGAATTAGAAGAGTGGCTACATAATTG 57.447 33.333 2.02 0.00 0.00 2.32
2284 4720 9.771534 GAGAATTAGAAGAGTGGCTACATAATT 57.228 33.333 2.02 5.28 0.00 1.40
2285 4721 8.928448 TGAGAATTAGAAGAGTGGCTACATAAT 58.072 33.333 2.02 0.00 0.00 1.28
2286 4722 8.306313 TGAGAATTAGAAGAGTGGCTACATAA 57.694 34.615 2.02 0.00 0.00 1.90
2349 4785 7.039504 ACAGGCAATCAGATGAAACAAGTTAAT 60.040 33.333 0.00 0.00 0.00 1.40
2356 4792 4.828939 AGAAACAGGCAATCAGATGAAACA 59.171 37.500 0.00 0.00 0.00 2.83
2520 4958 4.559153 CGCCCATTGTTTCTCTTTTGATT 58.441 39.130 0.00 0.00 0.00 2.57
2521 4959 3.614870 GCGCCCATTGTTTCTCTTTTGAT 60.615 43.478 0.00 0.00 0.00 2.57
2523 4961 2.061028 GCGCCCATTGTTTCTCTTTTG 58.939 47.619 0.00 0.00 0.00 2.44
2561 4999 0.457853 GTGCTACGCTCGGAATGTGA 60.458 55.000 0.00 0.00 0.00 3.58
2615 5053 1.829533 GCCTGCATGTATGGTGGGG 60.830 63.158 0.00 0.00 0.00 4.96
2617 5055 1.829533 GGGCCTGCATGTATGGTGG 60.830 63.158 0.84 0.00 0.00 4.61
2687 5125 0.774908 AATGGGTTGGTTTCTCGGGA 59.225 50.000 0.00 0.00 0.00 5.14
2717 5155 7.012327 TGTCATTAGCATAGAATTTGTAGTGGC 59.988 37.037 0.00 0.00 0.00 5.01
2737 5175 2.620115 CCACTCAGTGCTTTGTGTCATT 59.380 45.455 0.00 0.00 31.34 2.57
2760 5198 4.874396 GGCAACCACAACTACCTAATAGAC 59.126 45.833 0.00 0.00 34.65 2.59
2766 5204 2.039348 GGAAGGCAACCACAACTACCTA 59.961 50.000 0.00 0.00 37.17 3.08
2807 5245 7.075741 CGGAGAACGTGAACAAGAATAAAAAT 58.924 34.615 0.00 0.00 37.93 1.82
2856 5294 0.250727 CCAACTTGGTCCATCACGGT 60.251 55.000 0.00 0.00 35.57 4.83
2957 5397 1.943340 TGCGTGCACATGTGTTCTTTA 59.057 42.857 26.01 7.15 0.00 1.85
2961 5401 0.029300 ACTTGCGTGCACATGTGTTC 59.971 50.000 26.01 17.48 0.00 3.18
2971 5411 0.451135 CAAGAGCGTTACTTGCGTGC 60.451 55.000 0.00 0.00 38.28 5.34
2973 5413 1.578583 AACAAGAGCGTTACTTGCGT 58.421 45.000 14.57 4.70 45.66 5.24
3004 5461 2.812591 CACATCAAGCAGAAGCAGAAGT 59.187 45.455 0.00 0.00 45.49 3.01
3072 5529 1.808945 CTGTTTCTAAGCAGGTGCCTG 59.191 52.381 13.59 13.59 46.15 4.85
3185 5642 4.943705 CCCTGCAGATGTGTTGTTACTTAT 59.056 41.667 17.39 0.00 0.00 1.73
3189 5646 1.200020 GCCCTGCAGATGTGTTGTTAC 59.800 52.381 17.39 0.00 0.00 2.50
3234 5691 2.270205 CTGACATCCAGGCCGCTT 59.730 61.111 0.00 0.00 39.23 4.68
3483 5949 4.841443 ACAAAAACGGGTAAACTCATCC 57.159 40.909 0.00 0.00 0.00 3.51
3531 5998 3.981211 ACAATCAACGCTCAGCATTTTT 58.019 36.364 0.00 0.00 0.00 1.94
3532 5999 3.648339 ACAATCAACGCTCAGCATTTT 57.352 38.095 0.00 0.00 0.00 1.82
3533 6000 3.648339 AACAATCAACGCTCAGCATTT 57.352 38.095 0.00 0.00 0.00 2.32
3534 6001 3.648339 AAACAATCAACGCTCAGCATT 57.352 38.095 0.00 0.00 0.00 3.56
3535 6002 3.648339 AAAACAATCAACGCTCAGCAT 57.352 38.095 0.00 0.00 0.00 3.79
3536 6003 3.435105 AAAAACAATCAACGCTCAGCA 57.565 38.095 0.00 0.00 0.00 4.41
3594 6061 7.450074 TGAAGGACAACAACATACTGAATAGT 58.550 34.615 0.00 0.00 40.99 2.12
3611 6084 2.410785 CGACAACGTACTGAAGGACA 57.589 50.000 0.00 0.00 34.56 4.02
3623 6096 5.840940 AAAAGAGAAATAGGACGACAACG 57.159 39.130 0.00 0.00 45.75 4.10
3662 6135 6.796426 TCTAATCAGACTAACAGGATTCACG 58.204 40.000 0.00 0.00 32.62 4.35
3672 6145 8.301002 GGTCATACCAGATCTAATCAGACTAAC 58.699 40.741 0.00 0.00 38.42 2.34
3733 6206 9.385902 GCATAACACATTACACATCACATAATC 57.614 33.333 0.00 0.00 0.00 1.75
3758 6231 3.756963 AGAACCAAAAGGTCTAATTCCGC 59.243 43.478 0.00 0.00 0.00 5.54
3788 6261 2.877335 CGCTCCCAGACTAAACACTAC 58.123 52.381 0.00 0.00 0.00 2.73
3845 6318 2.634940 TCTATCCTGGGATTGCTGTAGC 59.365 50.000 7.48 0.00 37.53 3.58
3852 6325 3.558746 GGTGCATCTCTATCCTGGGATTG 60.559 52.174 7.48 6.12 36.17 2.67
3951 6424 9.295214 TCACATAAATTATGCATAACAAAACGG 57.705 29.630 21.10 9.58 39.79 4.44
3979 6453 3.442625 TCCGCTATCCAATACCATAGACG 59.557 47.826 0.00 0.00 0.00 4.18
4085 6603 1.618837 GAAGTGTCTAGGCACCACTCA 59.381 52.381 23.57 0.00 38.44 3.41
4107 6625 4.531854 TCCAAGTCCACATCAAACTTTGA 58.468 39.130 6.67 6.67 45.01 2.69
4170 6688 7.508687 TGCATATCCAAACTCATATGTGTAGT 58.491 34.615 10.65 0.43 35.97 2.73
4278 6802 0.703488 TGGCCCTTGATCCAATGTCA 59.297 50.000 0.00 0.00 0.00 3.58
4330 6854 9.296400 GCGTTCAATACCACAAATATTTTATGT 57.704 29.630 0.00 0.00 0.00 2.29
4414 6938 2.672714 CACGCACACAAAGCTAGTCTA 58.327 47.619 0.00 0.00 0.00 2.59
4445 6969 1.529010 CCAACCCACAGAGCAAGCA 60.529 57.895 0.00 0.00 0.00 3.91
4465 6989 0.620410 ATCTTCCGACCCACCCATGA 60.620 55.000 0.00 0.00 0.00 3.07
4477 7001 8.383619 CACATACACTCTTTTTAAGATCTTCCG 58.616 37.037 12.24 0.00 36.82 4.30
4585 7109 6.530887 CAGTGATGTGTTTTGTCATTTGTTCA 59.469 34.615 0.00 0.00 0.00 3.18
4588 7112 5.964758 ACAGTGATGTGTTTTGTCATTTGT 58.035 33.333 0.00 0.00 0.00 2.83
4609 7133 6.048732 TGTATTGCATCACTAGAGGAAACA 57.951 37.500 0.00 0.00 0.00 2.83
4614 7138 4.944619 TCCTGTATTGCATCACTAGAGG 57.055 45.455 0.00 0.00 33.45 3.69
4670 7194 5.476254 TGTGTTGATAGCACAATCATCCAAA 59.524 36.000 0.00 0.00 42.96 3.28
4671 7195 5.008980 TGTGTTGATAGCACAATCATCCAA 58.991 37.500 0.00 0.00 42.96 3.53
4672 7196 4.587891 TGTGTTGATAGCACAATCATCCA 58.412 39.130 0.00 0.00 42.96 3.41
4706 7230 8.984891 TTCACATTTTAGCCATGATACAAAAG 57.015 30.769 0.00 0.00 0.00 2.27
4710 7234 8.196771 GGAATTTCACATTTTAGCCATGATACA 58.803 33.333 0.00 0.00 0.00 2.29
4720 7244 9.480053 AACAATCACAGGAATTTCACATTTTAG 57.520 29.630 0.00 0.00 0.00 1.85
4721 7245 9.258826 CAACAATCACAGGAATTTCACATTTTA 57.741 29.630 0.00 0.00 0.00 1.52
4739 7263 4.713553 TCTCAGGCAGTTTACAACAATCA 58.286 39.130 0.00 0.00 0.00 2.57
4742 7266 6.272318 CAAAATCTCAGGCAGTTTACAACAA 58.728 36.000 0.00 0.00 0.00 2.83
4754 7278 2.297033 TGGAAACAGCAAAATCTCAGGC 59.703 45.455 0.00 0.00 35.01 4.85
4810 7334 1.302907 AGCCCTGGTTGGATGAAGAT 58.697 50.000 0.00 0.00 38.35 2.40
5029 7565 4.641645 TGCCCTTGGTGCTCCACG 62.642 66.667 7.09 5.58 44.22 4.94
5038 7574 2.360852 CACTGGAGCTGCCCTTGG 60.361 66.667 1.53 0.00 34.97 3.61
5063 7599 0.889186 CCAGGCTTGCGTTTACACCT 60.889 55.000 0.00 0.00 0.00 4.00
5141 7677 2.376855 AGGTAAAGCTCCTTTGCTCCTT 59.623 45.455 5.92 0.00 43.24 3.36
5188 7724 2.009042 GCAAACCAGATCCACTCCTCG 61.009 57.143 0.00 0.00 0.00 4.63
5198 7734 3.087031 CTGAGAATGGTGCAAACCAGAT 58.913 45.455 3.68 0.00 43.86 2.90
5297 7833 1.001860 GTCTGCTTTCCTCTCACTGCT 59.998 52.381 0.00 0.00 0.00 4.24
5298 7834 1.270518 TGTCTGCTTTCCTCTCACTGC 60.271 52.381 0.00 0.00 0.00 4.40
5339 7875 5.163884 GCTCTATTTTGAAAGTACACGTCCC 60.164 44.000 0.00 0.00 0.00 4.46
5418 7954 1.294659 GACCGAGAACAGCAGGCAAG 61.295 60.000 0.00 0.00 0.00 4.01
5493 8029 7.061210 CACACAAAGTTGATCACGTAAACAAAA 59.939 33.333 0.00 0.00 0.00 2.44
5544 8081 0.604578 TTGTGGTCGTAGGTAGTGGC 59.395 55.000 0.00 0.00 0.00 5.01
5556 8093 3.791353 CGACAAAAGAAAGCTTTGTGGTC 59.209 43.478 18.30 18.33 43.32 4.02
5569 8107 5.743026 TCAAATAACAGTGCGACAAAAGA 57.257 34.783 0.00 0.00 0.00 2.52
5570 8108 6.991485 AATCAAATAACAGTGCGACAAAAG 57.009 33.333 0.00 0.00 0.00 2.27
5571 8109 6.975197 TGAAATCAAATAACAGTGCGACAAAA 59.025 30.769 0.00 0.00 0.00 2.44
5574 8112 5.238432 AGTGAAATCAAATAACAGTGCGACA 59.762 36.000 0.00 0.00 0.00 4.35
5577 8115 5.688823 TCAGTGAAATCAAATAACAGTGCG 58.311 37.500 0.00 0.00 33.60 5.34
5586 8124 5.327732 ACAGTCCCATCAGTGAAATCAAAT 58.672 37.500 0.00 0.00 0.00 2.32
5597 8135 4.774124 ACATCACATTACAGTCCCATCAG 58.226 43.478 0.00 0.00 0.00 2.90
5632 8170 3.711190 TGCTTCAAGCTCAGGGATGTATA 59.289 43.478 11.57 0.00 42.97 1.47
5641 8179 3.973657 ACAAACAATGCTTCAAGCTCAG 58.026 40.909 11.57 2.49 42.97 3.35
5659 8197 7.913297 GCTGTTTCTACTGTACAATCAAAACAA 59.087 33.333 18.78 9.43 35.63 2.83
5766 8308 1.750399 GCAATGCAGGGGTGTCGAT 60.750 57.895 0.00 0.00 0.00 3.59
5771 8313 0.899720 ATGAAAGCAATGCAGGGGTG 59.100 50.000 8.35 0.00 0.00 4.61
5791 8333 2.809601 ACTGGCGACGACGAATGC 60.810 61.111 12.29 1.70 42.66 3.56
5817 8359 4.301072 TCACACCCCTTTATTCTTGAGG 57.699 45.455 0.00 0.00 0.00 3.86
5818 8360 5.500234 TCATCACACCCCTTTATTCTTGAG 58.500 41.667 0.00 0.00 0.00 3.02
5833 8375 3.485877 GCTTAAGGTCGCATTCATCACAC 60.486 47.826 4.29 0.00 0.00 3.82
5836 8378 2.938451 CTGCTTAAGGTCGCATTCATCA 59.062 45.455 4.29 0.00 35.32 3.07
5845 8387 4.361451 AAATCATTGCTGCTTAAGGTCG 57.639 40.909 4.29 0.00 0.00 4.79
5860 8402 9.956720 CTTAAATAGAGGAATTCGCAAAATCAT 57.043 29.630 0.00 0.00 0.00 2.45
5861 8403 8.405531 CCTTAAATAGAGGAATTCGCAAAATCA 58.594 33.333 0.00 0.00 36.33 2.57
5869 8411 6.821665 TGTTGGACCTTAAATAGAGGAATTCG 59.178 38.462 0.00 0.00 37.72 3.34
5906 8448 4.675510 AGCAAAAAGGATGTATGATTGCG 58.324 39.130 0.00 0.00 44.59 4.85
5920 8462 6.258507 AGTGTGGAATAAAGCAAAGCAAAAAG 59.741 34.615 0.00 0.00 0.00 2.27
5924 8466 4.584325 AGAGTGTGGAATAAAGCAAAGCAA 59.416 37.500 0.00 0.00 0.00 3.91
5926 8468 4.773323 AGAGTGTGGAATAAAGCAAAGC 57.227 40.909 0.00 0.00 0.00 3.51
5927 8469 6.655003 TCCTAAGAGTGTGGAATAAAGCAAAG 59.345 38.462 0.00 0.00 0.00 2.77
5929 8471 5.938125 GTCCTAAGAGTGTGGAATAAAGCAA 59.062 40.000 0.00 0.00 0.00 3.91
5931 8473 4.876679 GGTCCTAAGAGTGTGGAATAAAGC 59.123 45.833 0.00 0.00 0.00 3.51
5933 8475 5.098663 AGGGTCCTAAGAGTGTGGAATAAA 58.901 41.667 0.00 0.00 0.00 1.40
5934 8476 4.695606 AGGGTCCTAAGAGTGTGGAATAA 58.304 43.478 0.00 0.00 0.00 1.40
5936 8478 3.108376 GAGGGTCCTAAGAGTGTGGAAT 58.892 50.000 0.00 0.00 0.00 3.01
5946 8488 3.431486 GCTGAATGAGTGAGGGTCCTAAG 60.431 52.174 0.00 0.00 0.00 2.18
5990 8532 6.604795 CACTGTGAAGGGATGGAGATAAATTT 59.395 38.462 0.32 0.00 0.00 1.82
5993 8535 4.080356 CCACTGTGAAGGGATGGAGATAAA 60.080 45.833 9.86 0.00 31.69 1.40
5996 8538 1.842562 CCACTGTGAAGGGATGGAGAT 59.157 52.381 9.86 0.00 31.69 2.75
6006 8548 5.066375 TCACATGAGTTTTTCCACTGTGAAG 59.934 40.000 9.86 0.00 29.05 3.02
6009 8551 4.898829 TCACATGAGTTTTTCCACTGTG 57.101 40.909 0.00 0.00 0.00 3.66
6010 8552 5.913137 TTTCACATGAGTTTTTCCACTGT 57.087 34.783 0.00 0.00 0.00 3.55
6033 8575 8.720537 CAGGGTTTAAGGTTTAGGAGGATTATA 58.279 37.037 0.00 0.00 0.00 0.98
6039 8581 4.921644 TCAGGGTTTAAGGTTTAGGAGG 57.078 45.455 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.