Multiple sequence alignment - TraesCS6A01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G087400 chr6A 100.000 5910 0 0 1 5910 55744604 55738695 0.000000e+00 10914.0
1 TraesCS6A01G087400 chrUn 91.830 2350 107 40 2398 4710 20840637 20842938 0.000000e+00 3197.0
2 TraesCS6A01G087400 chrUn 87.380 1672 86 45 26 1637 20838380 20839986 0.000000e+00 1803.0
3 TraesCS6A01G087400 chrUn 97.338 601 16 0 1801 2401 20840011 20840611 0.000000e+00 1022.0
4 TraesCS6A01G087400 chrUn 83.946 517 36 29 4764 5240 20842965 20843474 9.030000e-123 451.0
5 TraesCS6A01G087400 chr6B 91.706 2351 117 43 2398 4710 92475142 92472832 0.000000e+00 3190.0
6 TraesCS6A01G087400 chr6B 90.122 901 53 15 885 1759 92476673 92475783 0.000000e+00 1138.0
7 TraesCS6A01G087400 chr6B 90.875 811 43 13 1 795 92477874 92477079 0.000000e+00 1059.0
8 TraesCS6A01G087400 chr6B 93.401 591 30 8 1813 2401 92475751 92475168 0.000000e+00 867.0
9 TraesCS6A01G087400 chr6B 81.487 713 45 44 4764 5397 92472805 92472101 6.840000e-139 505.0
10 TraesCS6A01G087400 chr6B 84.615 78 7 1 817 889 92477038 92476961 8.220000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G087400 chr6A 55738695 55744604 5909 True 10914.000000 10914 100.0000 1 5910 1 chr6A.!!$R1 5909
1 TraesCS6A01G087400 chrUn 20838380 20843474 5094 False 1618.250000 3197 90.1235 26 5240 4 chrUn.!!$F1 5214
2 TraesCS6A01G087400 chr6B 92472101 92477874 5773 True 1138.683333 3190 88.7010 1 5397 6 chr6B.!!$R1 5396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 184 0.178767 TGCTCTTGCTCACGCCATAT 59.821 50.0 0.00 0.00 40.48 1.78 F
690 720 0.320073 TCGGCGGTTCGTCAGAATTT 60.320 50.0 7.21 0.00 38.80 1.82 F
738 771 0.373716 CGTAATGCGCCTTGGAGTTC 59.626 55.0 4.18 0.00 0.00 3.01 F
930 1283 0.607489 CTTCCTGCCACCCAGAGTTG 60.607 60.0 0.00 0.00 44.64 3.16 F
1751 2130 0.806241 TACGGGAGCGCCAAAAATTC 59.194 50.0 9.31 0.00 35.15 2.17 F
1753 2132 1.091537 CGGGAGCGCCAAAAATTCTA 58.908 50.0 9.31 0.00 35.15 2.10 F
3040 3456 1.102809 CACCAGGTGCTGCAGAAACA 61.103 55.0 20.43 2.58 0.00 2.83 F
4332 4780 0.911769 TTCCGCCATTCTCTCCATGT 59.088 50.0 0.00 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1858 0.802494 GTTGGGGTATTGCGTGACTG 59.198 55.000 0.00 0.0 0.00 3.51 R
1733 2112 0.893727 AGAATTTTTGGCGCTCCCGT 60.894 50.000 7.64 0.0 35.87 5.28 R
1734 2113 1.064060 CTAGAATTTTTGGCGCTCCCG 59.936 52.381 7.64 0.0 35.87 5.14 R
1933 2312 2.505819 AGGTATTTCCTTCCGTCAGCAT 59.494 45.455 0.00 0.0 45.67 3.79 R
3239 3656 0.400594 ACTGCAGGTTGAAGGTACCC 59.599 55.000 19.93 0.0 36.27 3.69 R
3872 4289 2.356227 CCAAACTAGAAGCCCTCCCTTC 60.356 54.545 0.00 0.0 41.15 3.46 R
4540 4992 0.250295 CTTCACACTCGGCCTGGAAA 60.250 55.000 0.00 0.0 0.00 3.13 R
5534 6071 0.036952 ATGTTGTCGAGGGACTGCTG 60.037 55.000 0.00 0.0 41.55 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.887754 ACTCCTAGTTGAGAGAAAGAGAGT 58.112 41.667 3.32 0.00 36.22 3.24
109 116 1.852157 ATCCAAGTGGGCCACTCCA 60.852 57.895 37.60 24.22 44.62 3.86
162 181 2.357881 CTGCTCTTGCTCACGCCA 60.358 61.111 0.00 0.00 40.48 5.69
165 184 0.178767 TGCTCTTGCTCACGCCATAT 59.821 50.000 0.00 0.00 40.48 1.78
352 373 2.386935 CCCAATCCCTCCTCCACCC 61.387 68.421 0.00 0.00 0.00 4.61
519 545 1.378762 GGTGAGGCCTGCTGGTAAA 59.621 57.895 12.00 0.00 35.27 2.01
690 720 0.320073 TCGGCGGTTCGTCAGAATTT 60.320 50.000 7.21 0.00 38.80 1.82
706 736 5.415701 TCAGAATTTTTAGCTGGTGTGGATC 59.584 40.000 0.00 0.00 0.00 3.36
708 738 3.806949 TTTTTAGCTGGTGTGGATCCT 57.193 42.857 14.23 0.00 0.00 3.24
716 746 0.693049 GGTGTGGATCCTTGAGGTGT 59.307 55.000 14.23 0.00 36.34 4.16
738 771 0.373716 CGTAATGCGCCTTGGAGTTC 59.626 55.000 4.18 0.00 0.00 3.01
748 781 2.301583 GCCTTGGAGTTCTCTCTTGAGT 59.698 50.000 0.00 0.00 40.98 3.41
810 866 0.899717 TTGGCCAGTGGAATCTTGCC 60.900 55.000 15.20 5.26 43.69 4.52
847 908 2.194271 CGAACCTTTCGCTCCTATCAC 58.806 52.381 0.00 0.00 46.97 3.06
876 937 3.748568 ACTTGCTCTTTACTTGCTGCTAC 59.251 43.478 0.00 0.00 0.00 3.58
882 943 5.351465 GCTCTTTACTTGCTGCTACAATGTA 59.649 40.000 0.00 0.00 0.00 2.29
930 1283 0.607489 CTTCCTGCCACCCAGAGTTG 60.607 60.000 0.00 0.00 44.64 3.16
936 1289 1.301716 CCACCCAGAGTTGTCGGTG 60.302 63.158 0.00 0.00 0.00 4.94
993 1346 2.217038 TCCGGAAGCTCTGCTGGTT 61.217 57.895 0.00 0.00 39.62 3.67
1066 1419 0.957395 AGAACAGGTGCCTGATTGCG 60.957 55.000 23.55 0.00 46.30 4.85
1145 1499 7.121168 TCTGACCATTTGCTCGAAAAGATAAAT 59.879 33.333 0.00 0.00 0.00 1.40
1147 1501 7.541783 TGACCATTTGCTCGAAAAGATAAATTG 59.458 33.333 0.00 0.00 0.00 2.32
1148 1502 7.601856 ACCATTTGCTCGAAAAGATAAATTGA 58.398 30.769 0.00 0.00 0.00 2.57
1149 1503 8.253113 ACCATTTGCTCGAAAAGATAAATTGAT 58.747 29.630 0.00 0.00 0.00 2.57
1151 1505 9.895894 CATTTGCTCGAAAAGATAAATTGATTG 57.104 29.630 0.00 0.00 0.00 2.67
1152 1506 9.643693 ATTTGCTCGAAAAGATAAATTGATTGT 57.356 25.926 0.00 0.00 0.00 2.71
1153 1507 9.474920 TTTGCTCGAAAAGATAAATTGATTGTT 57.525 25.926 0.00 0.00 0.00 2.83
1154 1508 9.474920 TTGCTCGAAAAGATAAATTGATTGTTT 57.525 25.926 0.00 0.00 0.00 2.83
1155 1509 9.474920 TGCTCGAAAAGATAAATTGATTGTTTT 57.525 25.926 0.00 0.00 0.00 2.43
1189 1547 3.833650 TCCTTCCCGTGTTTCTGTGTATA 59.166 43.478 0.00 0.00 0.00 1.47
1193 1551 6.406624 CCTTCCCGTGTTTCTGTGTATATAGT 60.407 42.308 0.00 0.00 0.00 2.12
1205 1563 8.306313 TCTGTGTATATAGTTTGGATGTGTCT 57.694 34.615 0.00 0.00 0.00 3.41
1286 1644 4.827284 CACCCAAATTAGAGGACACTTTGT 59.173 41.667 0.00 0.00 0.00 2.83
1287 1645 4.827284 ACCCAAATTAGAGGACACTTTGTG 59.173 41.667 0.00 0.00 39.75 3.33
1334 1692 3.484407 AGCAGAAGAAGTGCACATTTCT 58.516 40.909 21.04 19.68 43.82 2.52
1413 1772 8.715191 AATCTTGTTTTTGTAATTGAAGTGCA 57.285 26.923 0.00 0.00 0.00 4.57
1585 1964 1.202855 CCCACATGGCAAGGAGATAGG 60.203 57.143 0.00 0.00 0.00 2.57
1618 1997 7.571025 TGGAGCTAAGGTTAGGGTTATAAAAG 58.429 38.462 0.00 0.00 0.00 2.27
1625 2004 8.603898 AAGGTTAGGGTTATAAAAGAATTGGG 57.396 34.615 0.00 0.00 0.00 4.12
1631 2010 7.913789 AGGGTTATAAAAGAATTGGGGTTTTC 58.086 34.615 0.00 0.00 0.00 2.29
1703 2082 6.664816 TGATTAGTTCATTCTGGCAGGAATTT 59.335 34.615 15.73 6.05 34.15 1.82
1709 2088 1.446618 CTGGCAGGAATTTTGCGGC 60.447 57.895 6.61 0.00 42.42 6.53
1718 2097 1.502990 AATTTTGCGGCGGGTTTTGC 61.503 50.000 9.78 0.00 0.00 3.68
1727 2106 1.064582 GCGGGTTTTGCGTTTAATGG 58.935 50.000 0.00 0.00 0.00 3.16
1733 2112 3.305471 GGTTTTGCGTTTAATGGCCTGTA 60.305 43.478 3.32 0.00 0.00 2.74
1734 2113 3.562567 TTTGCGTTTAATGGCCTGTAC 57.437 42.857 3.32 0.00 0.00 2.90
1748 2127 1.227883 TGTACGGGAGCGCCAAAAA 60.228 52.632 9.31 0.00 35.15 1.94
1751 2130 0.806241 TACGGGAGCGCCAAAAATTC 59.194 50.000 9.31 0.00 35.15 2.17
1753 2132 1.091537 CGGGAGCGCCAAAAATTCTA 58.908 50.000 9.31 0.00 35.15 2.10
1759 2138 4.331962 GAGCGCCAAAAATTCTAGTTACG 58.668 43.478 2.29 0.00 0.00 3.18
1761 2140 3.844099 GCGCCAAAAATTCTAGTTACGTG 59.156 43.478 0.00 0.00 0.00 4.49
1762 2141 4.377635 GCGCCAAAAATTCTAGTTACGTGA 60.378 41.667 0.00 0.00 0.00 4.35
1763 2142 5.672819 GCGCCAAAAATTCTAGTTACGTGAT 60.673 40.000 0.00 0.00 0.00 3.06
1764 2143 6.455913 GCGCCAAAAATTCTAGTTACGTGATA 60.456 38.462 0.00 0.00 0.00 2.15
1765 2144 7.457868 CGCCAAAAATTCTAGTTACGTGATAA 58.542 34.615 0.00 0.00 0.00 1.75
1766 2145 7.958567 CGCCAAAAATTCTAGTTACGTGATAAA 59.041 33.333 0.00 0.00 0.00 1.40
1767 2146 9.615295 GCCAAAAATTCTAGTTACGTGATAAAA 57.385 29.630 0.00 0.00 0.00 1.52
1846 2225 4.119862 GCTTGTCAGTCTAATCGCCATTA 58.880 43.478 0.00 0.00 0.00 1.90
1898 2277 6.142818 TGCATTACCGAAAGATATTTTGGG 57.857 37.500 20.70 11.87 39.33 4.12
1923 2302 5.008980 ACTTCAGTTCTAGTTACCTACGCT 58.991 41.667 0.00 0.00 0.00 5.07
1933 2312 7.338710 TCTAGTTACCTACGCTAGTTTCCTTA 58.661 38.462 0.00 0.00 35.14 2.69
1991 2370 5.262588 ACAAATTCCCTGTTTCTGTTGTC 57.737 39.130 0.00 0.00 0.00 3.18
2395 2775 6.200665 GCAAAGTATGAATTTGTGCTGTTTGA 59.799 34.615 1.91 0.00 39.36 2.69
2437 2846 3.198417 TGATGTCTGCCTCAGCTTGAATA 59.802 43.478 0.00 0.00 40.80 1.75
2462 2871 4.381292 GGGATCTTTCCTGCTTTGTTGATG 60.381 45.833 0.00 0.00 42.20 3.07
2749 3162 2.172717 ACCAGGAACAGTATATGCCCAC 59.827 50.000 0.00 0.00 0.00 4.61
2826 3239 2.766313 TCCTATTCGCACACCATATGC 58.234 47.619 0.00 0.00 39.81 3.14
2863 3276 5.983118 TGACATGCTCGTACGAATCAATAAT 59.017 36.000 20.00 7.32 0.00 1.28
2948 3361 7.770897 ACCTGCTGTAAGTAATAATCTCTTTGG 59.229 37.037 0.00 0.00 35.30 3.28
3040 3456 1.102809 CACCAGGTGCTGCAGAAACA 61.103 55.000 20.43 2.58 0.00 2.83
3100 3516 6.493189 TTTTAAGCTTGGGAATCAGGTTTT 57.507 33.333 9.86 0.00 29.59 2.43
3309 3726 4.925646 GGAAGTGATGCCAATTCTCAAAAC 59.074 41.667 0.00 0.00 44.26 2.43
3864 4281 6.151144 GTCCTGCTATGTTACCAGAATGTTTT 59.849 38.462 0.00 0.00 0.00 2.43
3872 4289 5.468746 TGTTACCAGAATGTTTTTCTCCGAG 59.531 40.000 0.00 0.00 0.00 4.63
3877 4294 4.154918 CAGAATGTTTTTCTCCGAGAAGGG 59.845 45.833 10.68 0.00 41.52 3.95
3878 4295 4.041691 AGAATGTTTTTCTCCGAGAAGGGA 59.958 41.667 10.68 0.00 41.52 4.20
3884 4301 2.450243 TCCGAGAAGGGAGGGCTT 59.550 61.111 0.00 0.00 41.52 4.35
3885 4302 1.686110 TCCGAGAAGGGAGGGCTTC 60.686 63.158 0.00 0.00 41.52 3.86
3888 4305 1.036707 CGAGAAGGGAGGGCTTCTAG 58.963 60.000 0.00 0.00 39.70 2.43
3889 4306 1.686741 CGAGAAGGGAGGGCTTCTAGT 60.687 57.143 0.00 0.00 39.70 2.57
3891 4308 2.841266 GAGAAGGGAGGGCTTCTAGTTT 59.159 50.000 0.00 0.00 39.70 2.66
3893 4310 1.290134 AGGGAGGGCTTCTAGTTTGG 58.710 55.000 0.00 0.00 0.00 3.28
3906 4327 8.903820 GGCTTCTAGTTTGGTATGTAATCATTT 58.096 33.333 0.00 0.00 35.70 2.32
3938 4359 3.156293 AGTGCTTGACCATACATTTGCA 58.844 40.909 0.00 0.00 0.00 4.08
3939 4360 3.057315 AGTGCTTGACCATACATTTGCAC 60.057 43.478 0.00 0.00 46.55 4.57
3941 4362 3.057386 TGCTTGACCATACATTTGCACTG 60.057 43.478 0.00 0.00 0.00 3.66
3944 4365 3.949132 TGACCATACATTTGCACTGCTA 58.051 40.909 1.98 0.00 0.00 3.49
3945 4366 3.940852 TGACCATACATTTGCACTGCTAG 59.059 43.478 1.98 0.00 0.00 3.42
3951 4372 2.038952 ACATTTGCACTGCTAGAGTCCA 59.961 45.455 1.98 0.00 29.75 4.02
3968 4389 3.118038 AGTCCACTGAACCAAAGTTGCTA 60.118 43.478 0.00 0.00 35.94 3.49
3996 4418 8.248117 CAACCGTGCTACTTATACTTTAGTTT 57.752 34.615 0.00 0.00 0.00 2.66
4028 4458 1.363246 TATGTTACTGCCACCCACCA 58.637 50.000 0.00 0.00 0.00 4.17
4034 4464 4.149019 TGCCACCCACCAAGCCAA 62.149 61.111 0.00 0.00 0.00 4.52
4044 4474 2.104622 CCACCAAGCCAAACCTTTTGAT 59.895 45.455 0.09 0.00 0.00 2.57
4062 4492 7.921745 CCTTTTGATGGCATTTTGTTTCATTTT 59.078 29.630 0.00 0.00 0.00 1.82
4063 4493 9.303537 CTTTTGATGGCATTTTGTTTCATTTTT 57.696 25.926 0.00 0.00 0.00 1.94
4069 4499 7.824672 TGGCATTTTGTTTCATTTTTGAACTT 58.175 26.923 0.00 0.00 0.00 2.66
4071 4501 7.164008 GGCATTTTGTTTCATTTTTGAACTTCG 59.836 33.333 0.00 0.00 0.00 3.79
4075 4505 4.803088 TGTTTCATTTTTGAACTTCGGCTG 59.197 37.500 0.00 0.00 0.00 4.85
4088 4533 5.552870 ACTTCGGCTGTATTTGGAGATAT 57.447 39.130 0.00 0.00 0.00 1.63
4091 4536 5.808366 TCGGCTGTATTTGGAGATATCTT 57.192 39.130 6.70 0.00 0.00 2.40
4094 4539 6.706270 TCGGCTGTATTTGGAGATATCTTTTC 59.294 38.462 6.70 1.07 0.00 2.29
4126 4571 6.707440 ATGTGAAACCAGTTTGATGTGTTA 57.293 33.333 0.00 0.00 34.36 2.41
4127 4572 6.516739 TGTGAAACCAGTTTGATGTGTTAA 57.483 33.333 0.00 0.00 34.36 2.01
4137 4583 7.063308 CCAGTTTGATGTGTTAATTATTGTGCC 59.937 37.037 0.00 0.00 0.00 5.01
4140 4586 6.596309 TGATGTGTTAATTATTGTGCCCAA 57.404 33.333 0.00 0.00 34.45 4.12
4161 4607 5.235186 CCAAGTGTAGTTCTTGACAAGACAG 59.765 44.000 17.52 2.30 43.17 3.51
4177 4623 8.758829 TGACAAGACAGTTATACCAGAACATAT 58.241 33.333 0.00 0.00 0.00 1.78
4205 4651 3.066760 GTCCACTGAACAAAACCTTCTGG 59.933 47.826 0.00 0.00 39.83 3.86
4236 4682 5.529581 TTTTTCCCCATTCAGTTCAGAAC 57.470 39.130 5.00 5.00 0.00 3.01
4249 4695 5.413309 AGTTCAGAACTGAGGTTGATAGG 57.587 43.478 15.41 0.00 41.01 2.57
4252 4698 6.043243 AGTTCAGAACTGAGGTTGATAGGAAA 59.957 38.462 15.41 0.00 41.01 3.13
4253 4699 6.042638 TCAGAACTGAGGTTGATAGGAAAG 57.957 41.667 0.00 0.00 35.58 2.62
4254 4700 4.633565 CAGAACTGAGGTTGATAGGAAAGC 59.366 45.833 0.00 0.00 35.58 3.51
4257 4703 6.385467 AGAACTGAGGTTGATAGGAAAGCTAT 59.615 38.462 0.00 0.00 35.59 2.97
4258 4704 7.565398 AGAACTGAGGTTGATAGGAAAGCTATA 59.435 37.037 0.00 0.00 35.59 1.31
4259 4705 7.296628 ACTGAGGTTGATAGGAAAGCTATAG 57.703 40.000 0.00 0.00 35.59 1.31
4260 4706 6.102897 TGAGGTTGATAGGAAAGCTATAGC 57.897 41.667 17.33 17.33 35.59 2.97
4261 4707 5.012148 TGAGGTTGATAGGAAAGCTATAGCC 59.988 44.000 21.17 6.02 43.38 3.93
4262 4708 4.021016 AGGTTGATAGGAAAGCTATAGCCG 60.021 45.833 21.17 0.00 43.38 5.52
4274 4720 2.761208 GCTATAGCCGATCCTACCATGT 59.239 50.000 14.13 0.00 34.31 3.21
4289 4735 5.702670 CCTACCATGTGTGAATGATACCATC 59.297 44.000 0.00 0.00 31.40 3.51
4290 4736 4.464008 ACCATGTGTGAATGATACCATCC 58.536 43.478 0.00 0.00 31.40 3.51
4323 4771 8.699749 GTTAATTTTTATAGCATTCCGCCATTC 58.300 33.333 0.00 0.00 44.04 2.67
4331 4779 1.878088 CATTCCGCCATTCTCTCCATG 59.122 52.381 0.00 0.00 0.00 3.66
4332 4780 0.911769 TTCCGCCATTCTCTCCATGT 59.088 50.000 0.00 0.00 0.00 3.21
4333 4781 1.788229 TCCGCCATTCTCTCCATGTA 58.212 50.000 0.00 0.00 0.00 2.29
4334 4782 2.329267 TCCGCCATTCTCTCCATGTAT 58.671 47.619 0.00 0.00 0.00 2.29
4335 4783 2.300152 TCCGCCATTCTCTCCATGTATC 59.700 50.000 0.00 0.00 0.00 2.24
4336 4784 2.037641 CCGCCATTCTCTCCATGTATCA 59.962 50.000 0.00 0.00 0.00 2.15
4337 4785 3.494924 CCGCCATTCTCTCCATGTATCAA 60.495 47.826 0.00 0.00 0.00 2.57
4338 4786 4.321718 CGCCATTCTCTCCATGTATCAAT 58.678 43.478 0.00 0.00 0.00 2.57
4339 4787 4.153655 CGCCATTCTCTCCATGTATCAATG 59.846 45.833 0.00 0.00 0.00 2.82
4340 4788 5.068636 GCCATTCTCTCCATGTATCAATGT 58.931 41.667 0.00 0.00 0.00 2.71
4341 4789 6.233434 GCCATTCTCTCCATGTATCAATGTA 58.767 40.000 0.00 0.00 0.00 2.29
4342 4790 6.370994 GCCATTCTCTCCATGTATCAATGTAG 59.629 42.308 0.00 0.00 0.00 2.74
4343 4791 6.877855 CCATTCTCTCCATGTATCAATGTAGG 59.122 42.308 0.00 0.00 0.00 3.18
4344 4792 7.256439 CCATTCTCTCCATGTATCAATGTAGGA 60.256 40.741 0.00 0.00 0.00 2.94
4345 4793 6.656632 TCTCTCCATGTATCAATGTAGGAC 57.343 41.667 0.00 0.00 0.00 3.85
4346 4794 6.136155 TCTCTCCATGTATCAATGTAGGACA 58.864 40.000 0.00 0.00 0.00 4.02
4347 4795 6.266330 TCTCTCCATGTATCAATGTAGGACAG 59.734 42.308 0.00 0.00 0.00 3.51
4348 4796 5.305386 TCTCCATGTATCAATGTAGGACAGG 59.695 44.000 0.00 0.00 0.00 4.00
4349 4797 4.968719 TCCATGTATCAATGTAGGACAGGT 59.031 41.667 0.00 0.00 0.00 4.00
4350 4798 6.140377 TCCATGTATCAATGTAGGACAGGTA 58.860 40.000 0.00 0.00 0.00 3.08
4355 4803 9.998106 ATGTATCAATGTAGGACAGGTAATAAC 57.002 33.333 0.00 0.00 0.00 1.89
4483 4935 3.880490 GGTATGATGTAAAACCGATGCCA 59.120 43.478 0.00 0.00 0.00 4.92
4488 4940 5.919755 TGATGTAAAACCGATGCCATACTA 58.080 37.500 0.00 0.00 0.00 1.82
4489 4941 5.989168 TGATGTAAAACCGATGCCATACTAG 59.011 40.000 0.00 0.00 0.00 2.57
4498 4950 3.243401 CGATGCCATACTAGCTGTACACA 60.243 47.826 0.00 0.00 33.45 3.72
4501 4953 3.181466 TGCCATACTAGCTGTACACATGG 60.181 47.826 0.00 4.23 35.30 3.66
4636 5092 2.695359 CTCGACCGGATCAAAAAGGAA 58.305 47.619 9.46 0.00 0.00 3.36
4710 5166 2.311854 ATTGTCCCTGCCTCCCTGG 61.312 63.158 0.00 0.00 39.35 4.45
4712 5168 2.936032 GTCCCTGCCTCCCTGGTT 60.936 66.667 0.00 0.00 38.35 3.67
4715 5171 0.645496 TCCCTGCCTCCCTGGTTATA 59.355 55.000 0.00 0.00 38.35 0.98
4718 5174 1.271597 CCTGCCTCCCTGGTTATATGC 60.272 57.143 0.00 0.00 38.35 3.14
4719 5175 0.771127 TGCCTCCCTGGTTATATGCC 59.229 55.000 0.00 0.00 38.35 4.40
4720 5176 1.068121 GCCTCCCTGGTTATATGCCT 58.932 55.000 0.00 0.00 38.35 4.75
4722 5178 2.158460 GCCTCCCTGGTTATATGCCTTT 60.158 50.000 0.00 0.00 38.35 3.11
4723 5179 3.691311 GCCTCCCTGGTTATATGCCTTTT 60.691 47.826 0.00 0.00 38.35 2.27
4724 5180 4.145052 CCTCCCTGGTTATATGCCTTTTC 58.855 47.826 0.00 0.00 0.00 2.29
4725 5181 4.141158 CCTCCCTGGTTATATGCCTTTTCT 60.141 45.833 0.00 0.00 0.00 2.52
4726 5182 5.449553 CTCCCTGGTTATATGCCTTTTCTT 58.550 41.667 0.00 0.00 0.00 2.52
4728 5184 5.891551 TCCCTGGTTATATGCCTTTTCTTTC 59.108 40.000 0.00 0.00 0.00 2.62
4729 5185 5.069119 CCCTGGTTATATGCCTTTTCTTTCC 59.931 44.000 0.00 0.00 0.00 3.13
4730 5186 5.656416 CCTGGTTATATGCCTTTTCTTTCCA 59.344 40.000 0.00 0.00 0.00 3.53
4731 5187 6.324770 CCTGGTTATATGCCTTTTCTTTCCAT 59.675 38.462 0.00 0.00 0.00 3.41
4732 5188 7.505585 CCTGGTTATATGCCTTTTCTTTCCATA 59.494 37.037 0.00 0.00 0.00 2.74
4733 5189 9.082313 CTGGTTATATGCCTTTTCTTTCCATAT 57.918 33.333 0.00 0.00 34.51 1.78
4734 5190 8.859090 TGGTTATATGCCTTTTCTTTCCATATG 58.141 33.333 0.00 0.00 32.89 1.78
4735 5191 7.814587 GGTTATATGCCTTTTCTTTCCATATGC 59.185 37.037 0.00 0.00 32.89 3.14
4736 5192 8.579863 GTTATATGCCTTTTCTTTCCATATGCT 58.420 33.333 0.00 0.00 32.89 3.79
4737 5193 5.945144 ATGCCTTTTCTTTCCATATGCTT 57.055 34.783 0.00 0.00 0.00 3.91
4739 5195 6.112927 TGCCTTTTCTTTCCATATGCTTTT 57.887 33.333 0.00 0.00 0.00 2.27
4740 5196 6.165577 TGCCTTTTCTTTCCATATGCTTTTC 58.834 36.000 0.00 0.00 0.00 2.29
4741 5197 5.582269 GCCTTTTCTTTCCATATGCTTTTCC 59.418 40.000 0.00 0.00 0.00 3.13
4742 5198 6.108687 CCTTTTCTTTCCATATGCTTTTCCC 58.891 40.000 0.00 0.00 0.00 3.97
4743 5199 6.295802 CCTTTTCTTTCCATATGCTTTTCCCA 60.296 38.462 0.00 0.00 0.00 4.37
4744 5200 5.659440 TTCTTTCCATATGCTTTTCCCAC 57.341 39.130 0.00 0.00 0.00 4.61
4745 5201 4.671831 TCTTTCCATATGCTTTTCCCACA 58.328 39.130 0.00 0.00 0.00 4.17
4746 5202 5.271598 TCTTTCCATATGCTTTTCCCACAT 58.728 37.500 0.00 0.00 0.00 3.21
4747 5203 5.127519 TCTTTCCATATGCTTTTCCCACATG 59.872 40.000 0.00 0.00 0.00 3.21
4748 5204 4.248174 TCCATATGCTTTTCCCACATGA 57.752 40.909 0.00 0.00 0.00 3.07
4749 5205 4.608269 TCCATATGCTTTTCCCACATGAA 58.392 39.130 0.00 0.00 0.00 2.57
4750 5206 5.210430 TCCATATGCTTTTCCCACATGAAT 58.790 37.500 0.00 0.00 0.00 2.57
4751 5207 5.662208 TCCATATGCTTTTCCCACATGAATT 59.338 36.000 0.00 0.00 0.00 2.17
4752 5208 6.156602 TCCATATGCTTTTCCCACATGAATTT 59.843 34.615 0.00 0.00 0.00 1.82
4753 5209 6.824704 CCATATGCTTTTCCCACATGAATTTT 59.175 34.615 0.00 0.00 0.00 1.82
4754 5210 7.201661 CCATATGCTTTTCCCACATGAATTTTG 60.202 37.037 0.00 0.00 0.00 2.44
4755 5211 3.814283 TGCTTTTCCCACATGAATTTTGC 59.186 39.130 0.00 0.00 0.00 3.68
4756 5212 3.189080 GCTTTTCCCACATGAATTTTGCC 59.811 43.478 0.00 0.00 0.00 4.52
4757 5213 3.415457 TTTCCCACATGAATTTTGCCC 57.585 42.857 0.00 0.00 0.00 5.36
4758 5214 2.021262 TCCCACATGAATTTTGCCCA 57.979 45.000 0.00 0.00 0.00 5.36
4759 5215 2.333069 TCCCACATGAATTTTGCCCAA 58.667 42.857 0.00 0.00 0.00 4.12
4760 5216 2.707791 TCCCACATGAATTTTGCCCAAA 59.292 40.909 0.00 0.00 0.00 3.28
4761 5217 2.813172 CCCACATGAATTTTGCCCAAAC 59.187 45.455 0.00 0.00 0.00 2.93
4762 5218 2.479656 CCACATGAATTTTGCCCAAACG 59.520 45.455 0.00 0.00 0.00 3.60
4763 5219 2.479656 CACATGAATTTTGCCCAAACGG 59.520 45.455 0.00 0.00 0.00 4.44
4764 5220 2.366916 ACATGAATTTTGCCCAAACGGA 59.633 40.909 0.00 0.00 0.00 4.69
4765 5221 3.007831 ACATGAATTTTGCCCAAACGGAT 59.992 39.130 0.00 0.00 0.00 4.18
4766 5222 4.221703 ACATGAATTTTGCCCAAACGGATA 59.778 37.500 0.00 0.00 0.00 2.59
4914 5381 0.617413 CACAAGGAGCCCTGACTGAT 59.383 55.000 0.00 0.00 32.13 2.90
4933 5410 4.530857 ACGCATGCGGCCTCTACC 62.531 66.667 39.95 0.00 44.69 3.18
4990 5473 3.152261 TGTAACAAACAAACTTGGCGG 57.848 42.857 0.00 0.00 34.29 6.13
5031 5514 5.413833 ACACACACAATCAGATGATTCTTCC 59.586 40.000 5.09 0.00 42.41 3.46
5032 5515 5.646793 CACACACAATCAGATGATTCTTCCT 59.353 40.000 5.09 0.00 42.41 3.36
5083 5569 2.202797 ATGCTGTCGCTGCTACCG 60.203 61.111 1.61 0.00 36.97 4.02
5090 5576 4.796231 CGCTGCTACCGCGGAACT 62.796 66.667 35.90 12.99 45.62 3.01
5091 5577 2.886124 GCTGCTACCGCGGAACTC 60.886 66.667 35.90 17.62 45.62 3.01
5106 5592 1.869767 GAACTCACTCCTGTGCTTGTG 59.130 52.381 0.00 0.00 43.49 3.33
5107 5593 0.533755 ACTCACTCCTGTGCTTGTGC 60.534 55.000 0.00 0.00 43.49 4.57
5108 5594 0.250209 CTCACTCCTGTGCTTGTGCT 60.250 55.000 0.00 0.00 43.49 4.40
5142 5643 3.609853 TCATTATGGGTGCACTTCTCAC 58.390 45.455 17.98 0.00 0.00 3.51
5146 5647 3.642755 GGTGCACTTCTCACCGTG 58.357 61.111 17.98 0.00 43.75 4.94
5147 5648 1.069090 GGTGCACTTCTCACCGTGA 59.931 57.895 17.98 0.29 43.75 4.35
5149 5650 1.295792 GTGCACTTCTCACCGTGAAA 58.704 50.000 10.32 0.18 33.04 2.69
5150 5651 1.668751 GTGCACTTCTCACCGTGAAAA 59.331 47.619 10.32 0.00 33.04 2.29
5151 5652 2.096819 GTGCACTTCTCACCGTGAAAAA 59.903 45.455 10.32 0.00 33.04 1.94
5152 5653 2.948979 TGCACTTCTCACCGTGAAAAAT 59.051 40.909 2.19 0.00 33.04 1.82
5154 5655 3.799035 CACTTCTCACCGTGAAAAATCG 58.201 45.455 2.19 0.00 33.04 3.34
5155 5656 2.223377 ACTTCTCACCGTGAAAAATCGC 59.777 45.455 2.19 0.00 0.00 4.58
5166 5675 4.376916 GTGAAAAATCGCGCAAATTTCTG 58.623 39.130 15.64 0.00 32.60 3.02
5171 5680 1.514873 CGCGCAAATTTCTGCTCCC 60.515 57.895 8.75 0.00 40.33 4.30
5220 5732 0.032952 ATATGGATACGGCGTGCGTT 59.967 50.000 24.86 4.42 42.51 4.84
5228 5740 4.692475 GGCGTGCGTTGTAGGGGT 62.692 66.667 0.00 0.00 0.00 4.95
5229 5741 3.419759 GCGTGCGTTGTAGGGGTG 61.420 66.667 0.00 0.00 0.00 4.61
5230 5742 2.340809 CGTGCGTTGTAGGGGTGA 59.659 61.111 0.00 0.00 0.00 4.02
5232 5744 1.370064 GTGCGTTGTAGGGGTGAGT 59.630 57.895 0.00 0.00 0.00 3.41
5233 5745 0.949105 GTGCGTTGTAGGGGTGAGTG 60.949 60.000 0.00 0.00 0.00 3.51
5234 5746 1.370064 GCGTTGTAGGGGTGAGTGT 59.630 57.895 0.00 0.00 0.00 3.55
5235 5747 0.604578 GCGTTGTAGGGGTGAGTGTA 59.395 55.000 0.00 0.00 0.00 2.90
5236 5748 1.206371 GCGTTGTAGGGGTGAGTGTAT 59.794 52.381 0.00 0.00 0.00 2.29
5237 5749 2.888594 CGTTGTAGGGGTGAGTGTATG 58.111 52.381 0.00 0.00 0.00 2.39
5238 5750 2.232941 CGTTGTAGGGGTGAGTGTATGT 59.767 50.000 0.00 0.00 0.00 2.29
5249 5775 1.649171 GAGTGTATGTGAACGTCTGCG 59.351 52.381 0.00 0.00 44.93 5.18
5275 5807 6.687081 TGTACGTGATTTGAAAAGAAGGTT 57.313 33.333 0.00 0.00 0.00 3.50
5276 5808 7.789273 TGTACGTGATTTGAAAAGAAGGTTA 57.211 32.000 0.00 0.00 0.00 2.85
5311 5843 1.806542 GCGAATTTGCCTGTTGAGAGA 59.193 47.619 6.38 0.00 0.00 3.10
5318 5850 2.838736 TGCCTGTTGAGAGAGTGTTTC 58.161 47.619 0.00 0.00 0.00 2.78
5319 5851 2.147150 GCCTGTTGAGAGAGTGTTTCC 58.853 52.381 0.00 0.00 0.00 3.13
5325 5857 4.103153 TGTTGAGAGAGTGTTTCCCTCATT 59.897 41.667 0.00 0.00 34.34 2.57
5347 5879 0.956633 GTGTGTGGGAGACGTAGACA 59.043 55.000 0.00 0.00 0.00 3.41
5348 5880 1.544691 GTGTGTGGGAGACGTAGACAT 59.455 52.381 0.00 0.00 0.00 3.06
5349 5881 2.751259 GTGTGTGGGAGACGTAGACATA 59.249 50.000 0.00 0.00 0.00 2.29
5350 5882 3.380637 GTGTGTGGGAGACGTAGACATAT 59.619 47.826 0.00 0.00 0.00 1.78
5351 5883 4.577693 GTGTGTGGGAGACGTAGACATATA 59.422 45.833 0.00 0.00 0.00 0.86
5352 5884 4.820173 TGTGTGGGAGACGTAGACATATAG 59.180 45.833 0.00 0.00 0.00 1.31
5353 5885 3.819337 TGTGGGAGACGTAGACATATAGC 59.181 47.826 0.00 0.00 0.00 2.97
5355 5887 3.819337 TGGGAGACGTAGACATATAGCAC 59.181 47.826 0.00 0.00 0.00 4.40
5364 5901 4.380841 AGACATATAGCACGACCGAAAA 57.619 40.909 0.00 0.00 0.00 2.29
5369 5906 1.756408 TAGCACGACCGAAAACCCCA 61.756 55.000 0.00 0.00 0.00 4.96
5397 5934 1.026718 CGTCATCTGCCTCCCAAACC 61.027 60.000 0.00 0.00 0.00 3.27
5398 5935 0.681243 GTCATCTGCCTCCCAAACCC 60.681 60.000 0.00 0.00 0.00 4.11
5399 5936 1.380380 CATCTGCCTCCCAAACCCC 60.380 63.158 0.00 0.00 0.00 4.95
5400 5937 1.856873 ATCTGCCTCCCAAACCCCA 60.857 57.895 0.00 0.00 0.00 4.96
5401 5938 1.867595 ATCTGCCTCCCAAACCCCAG 61.868 60.000 0.00 0.00 0.00 4.45
5402 5939 2.780924 TGCCTCCCAAACCCCAGT 60.781 61.111 0.00 0.00 0.00 4.00
5403 5940 2.283173 GCCTCCCAAACCCCAGTG 60.283 66.667 0.00 0.00 0.00 3.66
5404 5941 3.146828 GCCTCCCAAACCCCAGTGT 62.147 63.158 0.00 0.00 0.00 3.55
5405 5942 1.074951 CCTCCCAAACCCCAGTGTC 59.925 63.158 0.00 0.00 0.00 3.67
5406 5943 1.074951 CTCCCAAACCCCAGTGTCC 59.925 63.158 0.00 0.00 0.00 4.02
5407 5944 1.698116 TCCCAAACCCCAGTGTCCA 60.698 57.895 0.00 0.00 0.00 4.02
5408 5945 1.228552 CCCAAACCCCAGTGTCCAG 60.229 63.158 0.00 0.00 0.00 3.86
5409 5946 1.903404 CCAAACCCCAGTGTCCAGC 60.903 63.158 0.00 0.00 0.00 4.85
5410 5947 1.903404 CAAACCCCAGTGTCCAGCC 60.903 63.158 0.00 0.00 0.00 4.85
5411 5948 3.146828 AAACCCCAGTGTCCAGCCC 62.147 63.158 0.00 0.00 0.00 5.19
5415 5952 4.351054 CCAGTGTCCAGCCCCCAC 62.351 72.222 0.00 0.00 0.00 4.61
5416 5953 4.351054 CAGTGTCCAGCCCCCACC 62.351 72.222 0.00 0.00 0.00 4.61
5435 5972 3.782443 CCCACCACCCTCGCCTAC 61.782 72.222 0.00 0.00 0.00 3.18
5436 5973 3.782443 CCACCACCCTCGCCTACC 61.782 72.222 0.00 0.00 0.00 3.18
5437 5974 4.143333 CACCACCCTCGCCTACCG 62.143 72.222 0.00 0.00 38.61 4.02
5440 5977 3.771160 CACCCTCGCCTACCGCTT 61.771 66.667 0.00 0.00 36.73 4.68
5441 5978 3.459063 ACCCTCGCCTACCGCTTC 61.459 66.667 0.00 0.00 36.73 3.86
5442 5979 4.222847 CCCTCGCCTACCGCTTCC 62.223 72.222 0.00 0.00 36.73 3.46
5443 5980 3.148279 CCTCGCCTACCGCTTCCT 61.148 66.667 0.00 0.00 36.73 3.36
5444 5981 2.722201 CCTCGCCTACCGCTTCCTT 61.722 63.158 0.00 0.00 36.73 3.36
5445 5982 1.227002 CTCGCCTACCGCTTCCTTC 60.227 63.158 0.00 0.00 36.73 3.46
5446 5983 2.202892 CGCCTACCGCTTCCTTCC 60.203 66.667 0.00 0.00 34.21 3.46
5447 5984 2.202892 GCCTACCGCTTCCTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
5448 5985 2.202892 CCTACCGCTTCCTTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
5449 5986 2.202892 CTACCGCTTCCTTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
5450 5987 4.137872 TACCGCTTCCTTCCGCCG 62.138 66.667 0.00 0.00 0.00 6.46
5519 6056 3.396491 GACATCTTCGACGACGGTT 57.604 52.632 7.55 0.00 40.21 4.44
5520 6057 0.982673 GACATCTTCGACGACGGTTG 59.017 55.000 7.55 0.45 40.21 3.77
5521 6058 0.388134 ACATCTTCGACGACGGTTGG 60.388 55.000 7.55 0.00 40.21 3.77
5522 6059 0.388134 CATCTTCGACGACGGTTGGT 60.388 55.000 7.55 0.00 40.21 3.67
5523 6060 0.388134 ATCTTCGACGACGGTTGGTG 60.388 55.000 7.55 0.00 40.21 4.17
5524 6061 2.019951 CTTCGACGACGGTTGGTGG 61.020 63.158 7.55 0.00 40.21 4.61
5525 6062 3.502990 TTCGACGACGGTTGGTGGG 62.503 63.158 7.55 0.00 40.21 4.61
5526 6063 3.980989 CGACGACGGTTGGTGGGA 61.981 66.667 0.00 0.00 35.72 4.37
5527 6064 2.048503 GACGACGGTTGGTGGGAG 60.049 66.667 0.00 0.00 0.00 4.30
5528 6065 3.584868 GACGACGGTTGGTGGGAGG 62.585 68.421 0.00 0.00 0.00 4.30
5532 6069 4.323477 CGGTTGGTGGGAGGCGAA 62.323 66.667 0.00 0.00 0.00 4.70
5533 6070 2.671963 GGTTGGTGGGAGGCGAAC 60.672 66.667 0.00 0.00 0.00 3.95
5534 6071 2.671963 GTTGGTGGGAGGCGAACC 60.672 66.667 0.00 0.00 34.38 3.62
5535 6072 3.172106 TTGGTGGGAGGCGAACCA 61.172 61.111 0.00 0.00 42.19 3.67
5536 6073 3.190738 TTGGTGGGAGGCGAACCAG 62.191 63.158 0.00 0.00 44.48 4.00
5538 6075 4.329545 GTGGGAGGCGAACCAGCA 62.330 66.667 0.00 0.00 37.45 4.41
5539 6076 4.020617 TGGGAGGCGAACCAGCAG 62.021 66.667 0.00 0.00 39.06 4.24
5540 6077 4.021925 GGGAGGCGAACCAGCAGT 62.022 66.667 0.00 0.00 39.06 4.40
5541 6078 2.435059 GGAGGCGAACCAGCAGTC 60.435 66.667 0.00 0.00 39.06 3.51
5542 6079 2.435059 GAGGCGAACCAGCAGTCC 60.435 66.667 0.00 0.00 39.06 3.85
5543 6080 3.959991 GAGGCGAACCAGCAGTCCC 62.960 68.421 0.00 0.00 39.06 4.46
5544 6081 4.021925 GGCGAACCAGCAGTCCCT 62.022 66.667 0.00 0.00 39.27 4.20
5545 6082 2.435059 GCGAACCAGCAGTCCCTC 60.435 66.667 0.00 0.00 37.05 4.30
5546 6083 2.125912 CGAACCAGCAGTCCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
5547 6084 2.636412 CGAACCAGCAGTCCCTCGA 61.636 63.158 0.00 0.00 29.51 4.04
5548 6085 1.079750 GAACCAGCAGTCCCTCGAC 60.080 63.158 0.00 0.00 39.50 4.20
5549 6086 1.816863 GAACCAGCAGTCCCTCGACA 61.817 60.000 0.00 0.00 41.87 4.35
5550 6087 1.407656 AACCAGCAGTCCCTCGACAA 61.408 55.000 0.00 0.00 41.87 3.18
5551 6088 1.374758 CCAGCAGTCCCTCGACAAC 60.375 63.158 0.00 0.00 41.87 3.32
5552 6089 1.367471 CAGCAGTCCCTCGACAACA 59.633 57.895 0.00 0.00 41.87 3.33
5553 6090 0.036952 CAGCAGTCCCTCGACAACAT 60.037 55.000 0.00 0.00 41.87 2.71
5554 6091 0.247736 AGCAGTCCCTCGACAACATC 59.752 55.000 0.00 0.00 41.87 3.06
5555 6092 0.247736 GCAGTCCCTCGACAACATCT 59.752 55.000 0.00 0.00 41.87 2.90
5556 6093 2.001812 CAGTCCCTCGACAACATCTG 57.998 55.000 0.00 0.00 41.87 2.90
5557 6094 0.247736 AGTCCCTCGACAACATCTGC 59.752 55.000 0.00 0.00 41.87 4.26
5558 6095 0.741221 GTCCCTCGACAACATCTGCC 60.741 60.000 0.00 0.00 38.99 4.85
5559 6096 1.811266 CCCTCGACAACATCTGCCG 60.811 63.158 0.00 0.00 0.00 5.69
5560 6097 2.456119 CCTCGACAACATCTGCCGC 61.456 63.158 0.00 0.00 0.00 6.53
5561 6098 2.792290 CTCGACAACATCTGCCGCG 61.792 63.158 0.00 0.00 0.00 6.46
5562 6099 2.809174 CGACAACATCTGCCGCGA 60.809 61.111 8.23 0.00 0.00 5.87
5563 6100 2.792290 CGACAACATCTGCCGCGAG 61.792 63.158 8.23 0.00 0.00 5.03
5575 6112 4.856607 CGCGAGGCCGAGGAGAAC 62.857 72.222 0.00 0.00 38.22 3.01
5576 6113 3.453679 GCGAGGCCGAGGAGAACT 61.454 66.667 0.00 0.00 38.22 3.01
5577 6114 2.802106 CGAGGCCGAGGAGAACTC 59.198 66.667 0.00 0.00 43.02 3.01
5586 6123 3.839432 GGAGAACTCCGCCTCCCG 61.839 72.222 5.06 0.00 42.35 5.14
5587 6124 4.516195 GAGAACTCCGCCTCCCGC 62.516 72.222 0.00 0.00 35.03 6.13
5589 6126 4.388499 GAACTCCGCCTCCCGCAA 62.388 66.667 0.00 0.00 37.30 4.85
5590 6127 4.699522 AACTCCGCCTCCCGCAAC 62.700 66.667 0.00 0.00 37.30 4.17
5595 6132 4.530857 CGCCTCCCGCAACCCTAG 62.531 72.222 0.00 0.00 37.30 3.02
5596 6133 4.858680 GCCTCCCGCAACCCTAGC 62.859 72.222 0.00 0.00 37.47 3.42
5597 6134 3.399181 CCTCCCGCAACCCTAGCA 61.399 66.667 0.00 0.00 0.00 3.49
5598 6135 2.125106 CTCCCGCAACCCTAGCAC 60.125 66.667 0.00 0.00 0.00 4.40
5599 6136 3.682292 CTCCCGCAACCCTAGCACC 62.682 68.421 0.00 0.00 0.00 5.01
5603 6140 4.715523 GCAACCCTAGCACCGCCA 62.716 66.667 0.00 0.00 0.00 5.69
5604 6141 2.746277 CAACCCTAGCACCGCCAC 60.746 66.667 0.00 0.00 0.00 5.01
5605 6142 4.029809 AACCCTAGCACCGCCACC 62.030 66.667 0.00 0.00 0.00 4.61
5675 6212 4.787280 CCTCGTGCCCTCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
5676 6213 3.151022 CTCGTGCCCTCCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
5677 6214 4.779733 TCGTGCCCTCCTCCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
5678 6215 4.787280 CGTGCCCTCCTCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
5679 6216 2.766229 GTGCCCTCCTCCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
5680 6217 4.095400 TGCCCTCCTCCCTCCTCC 62.095 72.222 0.00 0.00 0.00 4.30
5732 6269 2.758737 CCGCCTCGTACCCTCCTT 60.759 66.667 0.00 0.00 0.00 3.36
5733 6270 2.783288 CCGCCTCGTACCCTCCTTC 61.783 68.421 0.00 0.00 0.00 3.46
5734 6271 2.806237 GCCTCGTACCCTCCTTCG 59.194 66.667 0.00 0.00 0.00 3.79
5735 6272 2.050934 GCCTCGTACCCTCCTTCGT 61.051 63.158 0.00 0.00 0.00 3.85
5736 6273 2.002509 GCCTCGTACCCTCCTTCGTC 62.003 65.000 0.00 0.00 0.00 4.20
5737 6274 1.382692 CCTCGTACCCTCCTTCGTCC 61.383 65.000 0.00 0.00 0.00 4.79
5738 6275 0.394080 CTCGTACCCTCCTTCGTCCT 60.394 60.000 0.00 0.00 0.00 3.85
5739 6276 0.393537 TCGTACCCTCCTTCGTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
5740 6277 1.382692 CGTACCCTCCTTCGTCCTCC 61.383 65.000 0.00 0.00 0.00 4.30
5741 6278 1.077212 TACCCTCCTTCGTCCTCCG 60.077 63.158 0.00 0.00 38.13 4.63
5742 6279 3.839432 CCCTCCTTCGTCCTCCGC 61.839 72.222 0.00 0.00 36.19 5.54
5743 6280 3.839432 CCTCCTTCGTCCTCCGCC 61.839 72.222 0.00 0.00 36.19 6.13
5744 6281 4.194720 CTCCTTCGTCCTCCGCCG 62.195 72.222 0.00 0.00 36.19 6.46
5747 6284 4.514577 CTTCGTCCTCCGCCGCAT 62.515 66.667 0.00 0.00 36.19 4.73
5748 6285 4.508128 TTCGTCCTCCGCCGCATC 62.508 66.667 0.00 0.00 36.19 3.91
5791 6328 3.256833 GCCGCGCCAAATGCATTC 61.257 61.111 13.38 0.00 41.33 2.67
5792 6329 2.950710 CCGCGCCAAATGCATTCG 60.951 61.111 13.38 13.21 41.33 3.34
5793 6330 3.609887 CGCGCCAAATGCATTCGC 61.610 61.111 25.64 25.64 41.33 4.70
5794 6331 3.256833 GCGCCAAATGCATTCGCC 61.257 61.111 25.31 14.64 41.33 5.54
5795 6332 2.950710 CGCCAAATGCATTCGCCG 60.951 61.111 13.38 11.27 41.33 6.46
5796 6333 3.256833 GCCAAATGCATTCGCCGC 61.257 61.111 13.38 8.18 40.77 6.53
5797 6334 2.181273 CCAAATGCATTCGCCGCA 59.819 55.556 13.38 0.00 44.94 5.69
5798 6335 2.160221 CCAAATGCATTCGCCGCAC 61.160 57.895 13.38 0.00 43.35 5.34
5799 6336 2.160221 CAAATGCATTCGCCGCACC 61.160 57.895 13.38 0.00 43.35 5.01
5800 6337 3.355203 AAATGCATTCGCCGCACCC 62.355 57.895 13.38 0.00 43.35 4.61
5811 6348 4.394712 CGCACCCGCTTCTCCCTT 62.395 66.667 0.00 0.00 35.30 3.95
5812 6349 2.436824 GCACCCGCTTCTCCCTTC 60.437 66.667 0.00 0.00 34.30 3.46
5813 6350 2.960688 GCACCCGCTTCTCCCTTCT 61.961 63.158 0.00 0.00 34.30 2.85
5814 6351 1.614241 GCACCCGCTTCTCCCTTCTA 61.614 60.000 0.00 0.00 34.30 2.10
5815 6352 0.175989 CACCCGCTTCTCCCTTCTAC 59.824 60.000 0.00 0.00 0.00 2.59
5816 6353 0.976590 ACCCGCTTCTCCCTTCTACC 60.977 60.000 0.00 0.00 0.00 3.18
5817 6354 0.976073 CCCGCTTCTCCCTTCTACCA 60.976 60.000 0.00 0.00 0.00 3.25
5818 6355 0.461961 CCGCTTCTCCCTTCTACCAG 59.538 60.000 0.00 0.00 0.00 4.00
5819 6356 0.179097 CGCTTCTCCCTTCTACCAGC 60.179 60.000 0.00 0.00 0.00 4.85
5820 6357 0.179234 GCTTCTCCCTTCTACCAGCC 59.821 60.000 0.00 0.00 0.00 4.85
5821 6358 1.872773 CTTCTCCCTTCTACCAGCCT 58.127 55.000 0.00 0.00 0.00 4.58
5822 6359 1.484240 CTTCTCCCTTCTACCAGCCTG 59.516 57.143 0.00 0.00 0.00 4.85
5823 6360 0.978146 TCTCCCTTCTACCAGCCTGC 60.978 60.000 0.00 0.00 0.00 4.85
5824 6361 1.977293 CTCCCTTCTACCAGCCTGCC 61.977 65.000 0.00 0.00 0.00 4.85
5825 6362 2.187946 CCTTCTACCAGCCTGCCG 59.812 66.667 0.00 0.00 0.00 5.69
5826 6363 2.512515 CTTCTACCAGCCTGCCGC 60.513 66.667 0.00 0.00 37.98 6.53
5827 6364 4.096003 TTCTACCAGCCTGCCGCC 62.096 66.667 0.00 0.00 38.78 6.13
5899 6436 3.382832 CCCGTCCACTTCTCGCCT 61.383 66.667 0.00 0.00 0.00 5.52
5900 6437 2.182030 CCGTCCACTTCTCGCCTC 59.818 66.667 0.00 0.00 0.00 4.70
5901 6438 2.182030 CGTCCACTTCTCGCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
5902 6439 2.579738 GTCCACTTCTCGCCTCCC 59.420 66.667 0.00 0.00 0.00 4.30
5903 6440 2.119611 TCCACTTCTCGCCTCCCA 59.880 61.111 0.00 0.00 0.00 4.37
5904 6441 1.984570 TCCACTTCTCGCCTCCCAG 60.985 63.158 0.00 0.00 0.00 4.45
5905 6442 2.581354 CACTTCTCGCCTCCCAGG 59.419 66.667 0.00 0.00 38.80 4.45
5906 6443 2.685380 ACTTCTCGCCTCCCAGGG 60.685 66.667 0.00 0.00 35.37 4.45
5907 6444 2.364317 CTTCTCGCCTCCCAGGGA 60.364 66.667 8.35 8.35 35.37 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.567687 TGCCCATATCCTCTCCCTCA 59.432 55.000 0.00 0.00 0.00 3.86
109 116 1.536662 GGATGGATAGGCCGGGAGT 60.537 63.158 2.18 0.00 40.66 3.85
110 117 0.911525 ATGGATGGATAGGCCGGGAG 60.912 60.000 2.18 0.00 40.66 4.30
111 118 0.909610 GATGGATGGATAGGCCGGGA 60.910 60.000 2.18 0.00 40.66 5.14
112 119 0.911525 AGATGGATGGATAGGCCGGG 60.912 60.000 2.18 0.00 40.66 5.73
113 120 1.482593 GTAGATGGATGGATAGGCCGG 59.517 57.143 0.00 0.00 40.66 6.13
162 181 3.239253 GGGTCCACGGGCGGATAT 61.239 66.667 0.00 0.00 37.41 1.63
460 486 3.900892 GGCTCGCCGGAGATTCGA 61.901 66.667 8.83 4.46 43.27 3.71
519 545 3.562182 ACCCTTCCGAGTGTTTCAAAAT 58.438 40.909 0.00 0.00 0.00 1.82
690 720 2.642311 TCAAGGATCCACACCAGCTAAA 59.358 45.455 15.82 0.00 0.00 1.85
706 736 1.135689 GCATTACGCAACACCTCAAGG 60.136 52.381 0.00 0.00 41.79 3.61
708 738 0.515127 CGCATTACGCAACACCTCAA 59.485 50.000 0.00 0.00 42.60 3.02
748 781 6.567701 GCGATAACAAGGAAATCACACTGAAA 60.568 38.462 0.00 0.00 0.00 2.69
795 832 1.318158 GCAGGGCAAGATTCCACTGG 61.318 60.000 0.00 0.00 0.00 4.00
810 866 1.717937 CGAGAATTTCGCAGGCAGG 59.282 57.895 1.09 0.00 43.22 4.85
828 884 2.159282 TCGTGATAGGAGCGAAAGGTTC 60.159 50.000 0.00 0.00 45.11 3.62
847 908 6.521133 CAGCAAGTAAAGAGCAAGTTTTATCG 59.479 38.462 0.00 0.00 0.00 2.92
876 937 7.092079 TGCAACAGAAAGGAAATCATACATTG 58.908 34.615 0.00 0.00 0.00 2.82
882 943 3.830755 AGCTGCAACAGAAAGGAAATCAT 59.169 39.130 1.02 0.00 32.44 2.45
930 1283 4.331717 CCATATCAAAACCAGTACACCGAC 59.668 45.833 0.00 0.00 0.00 4.79
936 1289 7.201732 CCAATCACTCCATATCAAAACCAGTAC 60.202 40.741 0.00 0.00 0.00 2.73
993 1346 0.105964 CGTTGCTCCCCATCGGATTA 59.894 55.000 0.00 0.00 41.00 1.75
1066 1419 1.665679 TCGAAAAGATGAAGATGCGGC 59.334 47.619 0.00 0.00 0.00 6.53
1068 1421 5.147767 TCATTCGAAAAGATGAAGATGCG 57.852 39.130 0.00 0.00 0.00 4.73
1069 1422 6.417044 CCATTCATTCGAAAAGATGAAGATGC 59.583 38.462 15.02 0.00 36.61 3.91
1071 1424 7.870509 TCCATTCATTCGAAAAGATGAAGAT 57.129 32.000 15.02 0.39 36.61 2.40
1129 1483 9.474920 AAAACAATCAATTTATCTTTTCGAGCA 57.525 25.926 0.00 0.00 0.00 4.26
1162 1516 1.566018 GAAACACGGGAAGGAGCACG 61.566 60.000 0.00 0.00 41.30 5.34
1189 1547 4.697352 GTGCTTGAGACACATCCAAACTAT 59.303 41.667 0.00 0.00 37.96 2.12
1193 1551 2.158623 AGGTGCTTGAGACACATCCAAA 60.159 45.455 0.00 0.00 39.87 3.28
1242 1600 6.187480 GGTGTAAAACAAAGTTACTGTCGTC 58.813 40.000 0.00 0.00 33.46 4.20
1259 1617 6.195600 AGTGTCCTCTAATTTGGGTGTAAA 57.804 37.500 0.00 0.00 0.00 2.01
1260 1618 5.836024 AGTGTCCTCTAATTTGGGTGTAA 57.164 39.130 0.00 0.00 0.00 2.41
1304 1662 7.885297 TGTGCACTTCTTCTGCTATAATTTTT 58.115 30.769 19.41 0.00 35.53 1.94
1308 1666 7.555554 AGAAATGTGCACTTCTTCTGCTATAAT 59.444 33.333 19.41 0.00 35.53 1.28
1310 1668 6.409704 AGAAATGTGCACTTCTTCTGCTATA 58.590 36.000 19.41 0.00 35.53 1.31
1311 1669 5.251764 AGAAATGTGCACTTCTTCTGCTAT 58.748 37.500 19.41 0.00 35.53 2.97
1312 1670 4.645535 AGAAATGTGCACTTCTTCTGCTA 58.354 39.130 19.41 0.00 35.53 3.49
1313 1671 3.484407 AGAAATGTGCACTTCTTCTGCT 58.516 40.909 19.41 0.00 35.53 4.24
1314 1672 3.911661 AGAAATGTGCACTTCTTCTGC 57.088 42.857 19.41 0.00 35.03 4.26
1315 1673 6.963796 AGTAAAGAAATGTGCACTTCTTCTG 58.036 36.000 25.63 0.00 40.23 3.02
1318 1676 7.715249 TGAGTAGTAAAGAAATGTGCACTTCTT 59.285 33.333 21.97 21.97 42.35 2.52
1334 1692 9.613428 CCAAACCATGATAATCTGAGTAGTAAA 57.387 33.333 0.00 0.00 0.00 2.01
1445 1805 9.158097 TCCTTGGTAGTTACTAAAAAGGTAAGA 57.842 33.333 22.84 9.88 34.78 2.10
1462 1830 3.004752 CCAGATTGGGTTCCTTGGTAG 57.995 52.381 0.00 0.00 32.67 3.18
1488 1858 0.802494 GTTGGGGTATTGCGTGACTG 59.198 55.000 0.00 0.00 0.00 3.51
1585 1964 5.998363 CCCTAACCTTAGCTCCATTAATCAC 59.002 44.000 0.00 0.00 0.00 3.06
1618 1997 2.615391 TCCCTTGGAAAACCCCAATTC 58.385 47.619 0.00 0.00 44.44 2.17
1625 2004 6.367374 TCCATTTTATTCCCTTGGAAAACC 57.633 37.500 0.00 0.00 45.41 3.27
1631 2010 6.484308 GCATCAATTCCATTTTATTCCCTTGG 59.516 38.462 0.00 0.00 0.00 3.61
1709 2088 1.064582 GCCATTAAACGCAAAACCCG 58.935 50.000 0.00 0.00 0.00 5.28
1718 2097 1.011333 CCCGTACAGGCCATTAAACG 58.989 55.000 5.01 7.34 39.21 3.60
1733 2112 0.893727 AGAATTTTTGGCGCTCCCGT 60.894 50.000 7.64 0.00 35.87 5.28
1734 2113 1.064060 CTAGAATTTTTGGCGCTCCCG 59.936 52.381 7.64 0.00 35.87 5.14
1776 2155 9.422681 ACACCTCTATTTTGTTAGAGCTCTATA 57.577 33.333 23.81 13.38 42.54 1.31
1777 2156 8.312669 ACACCTCTATTTTGTTAGAGCTCTAT 57.687 34.615 23.81 11.61 42.54 1.98
1778 2157 7.719871 ACACCTCTATTTTGTTAGAGCTCTA 57.280 36.000 19.72 19.72 42.54 2.43
1779 2158 6.613153 ACACCTCTATTTTGTTAGAGCTCT 57.387 37.500 22.17 22.17 42.54 4.09
1780 2159 7.173390 ACAAACACCTCTATTTTGTTAGAGCTC 59.827 37.037 5.27 5.27 42.54 4.09
1781 2160 6.998673 ACAAACACCTCTATTTTGTTAGAGCT 59.001 34.615 0.00 0.00 42.54 4.09
1782 2161 7.203255 ACAAACACCTCTATTTTGTTAGAGC 57.797 36.000 3.48 0.00 42.54 4.09
1788 2167 9.797556 GAGTTTTAACAAACACCTCTATTTTGT 57.202 29.630 0.96 0.00 44.32 2.83
1789 2168 8.953990 CGAGTTTTAACAAACACCTCTATTTTG 58.046 33.333 0.96 0.00 44.32 2.44
1790 2169 8.895737 TCGAGTTTTAACAAACACCTCTATTTT 58.104 29.630 0.96 0.00 44.32 1.82
1791 2170 8.441312 TCGAGTTTTAACAAACACCTCTATTT 57.559 30.769 0.96 0.00 44.32 1.40
1792 2171 8.617290 ATCGAGTTTTAACAAACACCTCTATT 57.383 30.769 0.00 0.00 44.32 1.73
1793 2172 7.333672 GGATCGAGTTTTAACAAACACCTCTAT 59.666 37.037 0.00 0.00 44.32 1.98
1794 2173 6.647895 GGATCGAGTTTTAACAAACACCTCTA 59.352 38.462 0.00 0.00 44.32 2.43
1795 2174 5.469084 GGATCGAGTTTTAACAAACACCTCT 59.531 40.000 0.00 0.00 44.32 3.69
1796 2175 5.334646 GGGATCGAGTTTTAACAAACACCTC 60.335 44.000 0.00 0.00 44.32 3.85
1797 2176 4.517832 GGGATCGAGTTTTAACAAACACCT 59.482 41.667 0.00 0.00 44.32 4.00
1798 2177 4.276431 TGGGATCGAGTTTTAACAAACACC 59.724 41.667 0.00 0.00 44.32 4.16
1799 2178 5.209977 GTGGGATCGAGTTTTAACAAACAC 58.790 41.667 0.00 0.00 44.32 3.32
1846 2225 7.041235 CCATGCTGTTAAATGTTGGTTCAAAAT 60.041 33.333 0.00 0.00 0.00 1.82
1883 2262 7.611213 ACTGAAGTACCCAAAATATCTTTCG 57.389 36.000 0.00 0.00 0.00 3.46
1923 2302 4.382685 CCTTCCGTCAGCATAAGGAAACTA 60.383 45.833 7.05 0.00 42.68 2.24
1933 2312 2.505819 AGGTATTTCCTTCCGTCAGCAT 59.494 45.455 0.00 0.00 45.67 3.79
1954 2333 6.213195 AGGGAATTTGTATTTTGATCCAGCAA 59.787 34.615 0.00 0.00 0.00 3.91
1957 2336 7.174107 ACAGGGAATTTGTATTTTGATCCAG 57.826 36.000 0.00 0.00 0.00 3.86
2130 2509 4.508551 AGCACATCCATCTCATTGGTAA 57.491 40.909 0.00 0.00 38.01 2.85
2395 2775 6.157645 ACATCAACTGAGGTAGGATCAGATTT 59.842 38.462 9.78 0.00 45.80 2.17
2749 3162 3.288964 AGTTCATACAGGAGTAGTCGGG 58.711 50.000 0.00 0.00 32.86 5.14
2826 3239 5.163723 ACGAGCATGTCAGTAAAATTGGATG 60.164 40.000 0.00 0.00 0.00 3.51
2863 3276 3.558321 GGATGCACACCCTGTACAAGTAA 60.558 47.826 0.00 0.00 25.97 2.24
2948 3361 8.401709 AGTGACAATCAGAAGAAAAAGAAGAAC 58.598 33.333 0.00 0.00 0.00 3.01
3100 3516 7.199167 TCCCTGAAATTATGAACAGAGATCA 57.801 36.000 0.00 0.00 32.90 2.92
3224 3641 9.895138 TTGAAGGTACCCTATAATTAGTTGTTC 57.105 33.333 8.74 1.06 31.13 3.18
3239 3656 0.400594 ACTGCAGGTTGAAGGTACCC 59.599 55.000 19.93 0.00 36.27 3.69
3872 4289 2.356227 CCAAACTAGAAGCCCTCCCTTC 60.356 54.545 0.00 0.00 41.15 3.46
3877 4294 4.489306 ACATACCAAACTAGAAGCCCTC 57.511 45.455 0.00 0.00 0.00 4.30
3878 4295 6.157994 TGATTACATACCAAACTAGAAGCCCT 59.842 38.462 0.00 0.00 0.00 5.19
3879 4296 6.354130 TGATTACATACCAAACTAGAAGCCC 58.646 40.000 0.00 0.00 0.00 5.19
3880 4297 8.451908 AATGATTACATACCAAACTAGAAGCC 57.548 34.615 0.00 0.00 35.50 4.35
3881 4298 9.937175 GAAATGATTACATACCAAACTAGAAGC 57.063 33.333 0.00 0.00 35.50 3.86
3884 4301 9.613428 CCAGAAATGATTACATACCAAACTAGA 57.387 33.333 0.00 0.00 35.50 2.43
3885 4302 8.345565 GCCAGAAATGATTACATACCAAACTAG 58.654 37.037 0.00 0.00 35.50 2.57
3888 4305 6.974622 CAGCCAGAAATGATTACATACCAAAC 59.025 38.462 0.00 0.00 35.50 2.93
3889 4306 6.663093 ACAGCCAGAAATGATTACATACCAAA 59.337 34.615 0.00 0.00 35.50 3.28
3891 4308 5.589855 CACAGCCAGAAATGATTACATACCA 59.410 40.000 0.00 0.00 35.50 3.25
3893 4310 6.683974 ACACAGCCAGAAATGATTACATAC 57.316 37.500 0.00 0.00 35.50 2.39
3906 4327 1.047801 TCAAGCACTACACAGCCAGA 58.952 50.000 0.00 0.00 0.00 3.86
3938 4359 1.896465 GGTTCAGTGGACTCTAGCAGT 59.104 52.381 0.51 0.00 38.45 4.40
3939 4360 1.895798 TGGTTCAGTGGACTCTAGCAG 59.104 52.381 0.51 0.00 0.00 4.24
3941 4362 3.244249 ACTTTGGTTCAGTGGACTCTAGC 60.244 47.826 0.51 0.00 0.00 3.42
3944 4365 3.545703 CAACTTTGGTTCAGTGGACTCT 58.454 45.455 0.51 0.00 32.73 3.24
3945 4366 2.033424 GCAACTTTGGTTCAGTGGACTC 59.967 50.000 0.51 0.00 32.73 3.36
3951 4372 3.221771 TGCATAGCAACTTTGGTTCAGT 58.778 40.909 0.00 0.00 39.88 3.41
3996 4418 9.104965 GTGGCAGTAACATAATGTATGACTAAA 57.895 33.333 2.34 0.00 39.45 1.85
4015 4437 4.603535 GGCTTGGTGGGTGGCAGT 62.604 66.667 0.00 0.00 0.00 4.40
4034 4464 5.884792 TGAAACAAAATGCCATCAAAAGGTT 59.115 32.000 0.00 0.00 0.00 3.50
4044 4474 7.388460 AGTTCAAAAATGAAACAAAATGCCA 57.612 28.000 0.00 0.00 0.00 4.92
4062 4492 3.745799 TCCAAATACAGCCGAAGTTCAA 58.254 40.909 3.32 0.00 0.00 2.69
4063 4493 3.007506 TCTCCAAATACAGCCGAAGTTCA 59.992 43.478 3.32 0.00 0.00 3.18
4069 4499 5.808366 AAGATATCTCCAAATACAGCCGA 57.192 39.130 5.51 0.00 0.00 5.54
4071 4501 6.483640 ACGAAAAGATATCTCCAAATACAGCC 59.516 38.462 5.51 0.00 0.00 4.85
4075 4505 9.704098 GAACAACGAAAAGATATCTCCAAATAC 57.296 33.333 5.51 0.00 0.00 1.89
4088 4533 5.802956 GGTTTCACATTGAACAACGAAAAGA 59.197 36.000 0.00 0.00 35.89 2.52
4091 4536 5.060662 TGGTTTCACATTGAACAACGAAA 57.939 34.783 0.00 0.00 35.89 3.46
4094 4539 4.027572 ACTGGTTTCACATTGAACAACG 57.972 40.909 0.00 0.00 35.89 4.10
4126 4571 6.010219 AGAACTACACTTGGGCACAATAATT 58.990 36.000 0.00 0.00 35.73 1.40
4127 4572 5.570320 AGAACTACACTTGGGCACAATAAT 58.430 37.500 0.00 0.00 35.73 1.28
4137 4583 5.116180 TGTCTTGTCAAGAACTACACTTGG 58.884 41.667 16.86 0.00 43.11 3.61
4140 4586 5.599999 ACTGTCTTGTCAAGAACTACACT 57.400 39.130 16.86 0.00 39.67 3.55
4161 4607 8.857098 TGGACTGTAGATATGTTCTGGTATAAC 58.143 37.037 0.00 0.00 35.79 1.89
4177 4623 4.163458 AGGTTTTGTTCAGTGGACTGTAGA 59.837 41.667 2.55 0.00 44.12 2.59
4228 4674 5.407407 TCCTATCAACCTCAGTTCTGAAC 57.593 43.478 12.54 12.54 32.45 3.18
4231 4677 4.633565 GCTTTCCTATCAACCTCAGTTCTG 59.366 45.833 0.00 0.00 32.45 3.02
4232 4678 4.534103 AGCTTTCCTATCAACCTCAGTTCT 59.466 41.667 0.00 0.00 32.45 3.01
4233 4679 4.837972 AGCTTTCCTATCAACCTCAGTTC 58.162 43.478 0.00 0.00 32.45 3.01
4236 4682 6.162777 GCTATAGCTTTCCTATCAACCTCAG 58.837 44.000 17.75 0.00 37.84 3.35
4241 4687 5.135508 TCGGCTATAGCTTTCCTATCAAC 57.864 43.478 23.53 2.23 41.70 3.18
4245 4691 4.615513 AGGATCGGCTATAGCTTTCCTAT 58.384 43.478 27.53 14.63 39.75 2.57
4246 4692 4.048970 AGGATCGGCTATAGCTTTCCTA 57.951 45.455 27.53 8.12 39.75 2.94
4247 4693 2.896039 AGGATCGGCTATAGCTTTCCT 58.104 47.619 25.21 25.21 41.70 3.36
4249 4695 3.510360 TGGTAGGATCGGCTATAGCTTTC 59.490 47.826 23.53 16.46 41.70 2.62
4252 4698 2.901338 TGGTAGGATCGGCTATAGCT 57.099 50.000 23.53 4.58 41.70 3.32
4253 4699 2.761208 ACATGGTAGGATCGGCTATAGC 59.239 50.000 16.78 16.78 41.14 2.97
4254 4700 3.764434 ACACATGGTAGGATCGGCTATAG 59.236 47.826 0.00 0.00 0.00 1.31
4257 4703 1.686587 CACACATGGTAGGATCGGCTA 59.313 52.381 0.00 0.00 0.00 3.93
4258 4704 0.465705 CACACATGGTAGGATCGGCT 59.534 55.000 0.00 0.00 0.00 5.52
4259 4705 0.464036 TCACACATGGTAGGATCGGC 59.536 55.000 0.00 0.00 0.00 5.54
4260 4706 2.979814 TTCACACATGGTAGGATCGG 57.020 50.000 0.00 0.00 0.00 4.18
4261 4707 4.058721 TCATTCACACATGGTAGGATCG 57.941 45.455 0.00 0.00 0.00 3.69
4262 4708 5.934625 GGTATCATTCACACATGGTAGGATC 59.065 44.000 0.00 0.00 0.00 3.36
4301 4747 6.491403 AGAGAATGGCGGAATGCTATAAAAAT 59.509 34.615 0.00 0.00 45.06 1.82
4306 4754 3.055819 GGAGAGAATGGCGGAATGCTATA 60.056 47.826 0.00 0.00 45.06 1.31
4311 4759 1.878088 CATGGAGAGAATGGCGGAATG 59.122 52.381 0.00 0.00 0.00 2.67
4316 4764 3.391506 TGATACATGGAGAGAATGGCG 57.608 47.619 0.00 0.00 0.00 5.69
4323 4771 6.410942 TGTCCTACATTGATACATGGAGAG 57.589 41.667 0.00 0.00 30.31 3.20
4331 4779 9.826574 TTGTTATTACCTGTCCTACATTGATAC 57.173 33.333 0.00 0.00 0.00 2.24
4333 4781 9.920946 AATTGTTATTACCTGTCCTACATTGAT 57.079 29.630 0.00 0.00 0.00 2.57
4334 4782 9.173021 CAATTGTTATTACCTGTCCTACATTGA 57.827 33.333 0.00 0.00 0.00 2.57
4335 4783 8.956426 ACAATTGTTATTACCTGTCCTACATTG 58.044 33.333 4.92 0.00 0.00 2.82
4341 4789 9.975218 AAGAATACAATTGTTATTACCTGTCCT 57.025 29.630 17.78 3.99 0.00 3.85
4344 4792 8.466798 GCCAAGAATACAATTGTTATTACCTGT 58.533 33.333 17.78 0.00 0.00 4.00
4345 4793 8.465999 TGCCAAGAATACAATTGTTATTACCTG 58.534 33.333 17.78 10.90 0.00 4.00
4346 4794 8.588290 TGCCAAGAATACAATTGTTATTACCT 57.412 30.769 17.78 6.35 0.00 3.08
4347 4795 9.816354 ATTGCCAAGAATACAATTGTTATTACC 57.184 29.630 17.78 4.44 29.94 2.85
4369 4817 8.181904 TCCCTTTCATCCTGAATATTTATTGC 57.818 34.615 0.00 0.00 36.11 3.56
4483 4935 5.773575 CGATTCCATGTGTACAGCTAGTAT 58.226 41.667 0.00 0.00 34.67 2.12
4488 4940 1.656652 GCGATTCCATGTGTACAGCT 58.343 50.000 0.00 0.00 0.00 4.24
4489 4941 0.657840 GGCGATTCCATGTGTACAGC 59.342 55.000 0.00 0.00 34.01 4.40
4536 4988 0.252197 ACACTCGGCCTGGAAATACC 59.748 55.000 0.00 0.00 39.54 2.73
4537 4989 1.066430 TCACACTCGGCCTGGAAATAC 60.066 52.381 0.00 0.00 0.00 1.89
4539 4991 0.400213 TTCACACTCGGCCTGGAAAT 59.600 50.000 0.00 0.00 0.00 2.17
4540 4992 0.250295 CTTCACACTCGGCCTGGAAA 60.250 55.000 0.00 0.00 0.00 3.13
4678 5134 5.417580 GCAGGGACAATGTGAGGTTTATTTA 59.582 40.000 0.00 0.00 0.00 1.40
4710 5166 8.579863 AGCATATGGAAAGAAAAGGCATATAAC 58.420 33.333 4.56 0.00 0.00 1.89
4712 5168 8.710749 AAGCATATGGAAAGAAAAGGCATATA 57.289 30.769 4.56 0.00 0.00 0.86
4715 5171 5.945144 AAGCATATGGAAAGAAAAGGCAT 57.055 34.783 4.56 0.00 0.00 4.40
4718 5174 6.108687 GGGAAAAGCATATGGAAAGAAAAGG 58.891 40.000 4.56 0.00 0.00 3.11
4719 5175 6.591448 GTGGGAAAAGCATATGGAAAGAAAAG 59.409 38.462 4.56 0.00 0.00 2.27
4720 5176 6.042552 TGTGGGAAAAGCATATGGAAAGAAAA 59.957 34.615 4.56 0.00 0.00 2.29
4722 5178 5.083122 TGTGGGAAAAGCATATGGAAAGAA 58.917 37.500 4.56 0.00 0.00 2.52
4723 5179 4.671831 TGTGGGAAAAGCATATGGAAAGA 58.328 39.130 4.56 0.00 0.00 2.52
4724 5180 5.127519 TCATGTGGGAAAAGCATATGGAAAG 59.872 40.000 4.56 0.00 0.00 2.62
4725 5181 5.022122 TCATGTGGGAAAAGCATATGGAAA 58.978 37.500 4.56 0.00 0.00 3.13
4726 5182 4.608269 TCATGTGGGAAAAGCATATGGAA 58.392 39.130 4.56 0.00 0.00 3.53
4728 5184 5.540400 ATTCATGTGGGAAAAGCATATGG 57.460 39.130 4.56 0.00 0.00 2.74
4729 5185 7.677747 GCAAAATTCATGTGGGAAAAGCATATG 60.678 37.037 0.00 0.00 0.00 1.78
4730 5186 6.316890 GCAAAATTCATGTGGGAAAAGCATAT 59.683 34.615 0.00 0.00 0.00 1.78
4731 5187 5.642919 GCAAAATTCATGTGGGAAAAGCATA 59.357 36.000 0.00 0.00 0.00 3.14
4732 5188 4.456566 GCAAAATTCATGTGGGAAAAGCAT 59.543 37.500 0.00 0.00 0.00 3.79
4733 5189 3.814283 GCAAAATTCATGTGGGAAAAGCA 59.186 39.130 0.00 0.00 0.00 3.91
4734 5190 3.189080 GGCAAAATTCATGTGGGAAAAGC 59.811 43.478 0.00 0.00 0.00 3.51
4735 5191 3.752747 GGGCAAAATTCATGTGGGAAAAG 59.247 43.478 0.00 0.00 0.00 2.27
4736 5192 3.137176 TGGGCAAAATTCATGTGGGAAAA 59.863 39.130 0.00 0.00 0.00 2.29
4737 5193 2.707791 TGGGCAAAATTCATGTGGGAAA 59.292 40.909 0.00 0.00 0.00 3.13
4739 5195 2.021262 TGGGCAAAATTCATGTGGGA 57.979 45.000 0.00 0.00 0.00 4.37
4740 5196 2.813172 GTTTGGGCAAAATTCATGTGGG 59.187 45.455 0.00 0.00 31.33 4.61
4741 5197 2.479656 CGTTTGGGCAAAATTCATGTGG 59.520 45.455 0.00 0.00 31.33 4.17
4742 5198 2.479656 CCGTTTGGGCAAAATTCATGTG 59.520 45.455 0.00 0.00 31.33 3.21
4743 5199 2.366916 TCCGTTTGGGCAAAATTCATGT 59.633 40.909 0.00 0.00 35.24 3.21
4744 5200 3.037431 TCCGTTTGGGCAAAATTCATG 57.963 42.857 0.00 0.00 35.24 3.07
4745 5201 3.979101 ATCCGTTTGGGCAAAATTCAT 57.021 38.095 0.00 0.00 35.24 2.57
4746 5202 4.873746 TTATCCGTTTGGGCAAAATTCA 57.126 36.364 0.00 0.00 35.24 2.57
4747 5203 6.546972 TTTTTATCCGTTTGGGCAAAATTC 57.453 33.333 0.00 0.00 32.21 2.17
4819 5277 3.095347 GCCGGTCTCCCCTAGCTTG 62.095 68.421 1.90 0.00 0.00 4.01
4897 5364 0.907486 TCATCAGTCAGGGCTCCTTG 59.093 55.000 0.00 0.00 0.00 3.61
4933 5410 5.736486 TCACGAGCTATGTAAGTAGAGTG 57.264 43.478 0.00 0.00 0.00 3.51
4990 5473 4.408821 TGTGTGGCAGATCGGGGC 62.409 66.667 6.98 6.98 0.00 5.80
5039 5522 4.703645 TTGTCAGGTCGATAAGAGACAG 57.296 45.455 0.00 0.00 40.20 3.51
5042 5525 3.181475 GCCATTGTCAGGTCGATAAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
5076 5562 2.209064 GAGTGAGTTCCGCGGTAGCA 62.209 60.000 27.15 16.16 45.49 3.49
5106 5592 6.545298 ACCCATAATGATCTCTCTTTTCAAGC 59.455 38.462 0.00 0.00 0.00 4.01
5107 5593 7.468357 GCACCCATAATGATCTCTCTTTTCAAG 60.468 40.741 0.00 0.00 0.00 3.02
5108 5594 6.319658 GCACCCATAATGATCTCTCTTTTCAA 59.680 38.462 0.00 0.00 0.00 2.69
5142 5643 1.335935 ATTTGCGCGATTTTTCACGG 58.664 45.000 12.10 0.00 0.00 4.94
5143 5644 3.119463 AGAAATTTGCGCGATTTTTCACG 59.881 39.130 24.37 0.00 0.00 4.35
5144 5645 4.376916 CAGAAATTTGCGCGATTTTTCAC 58.623 39.130 24.37 13.16 0.00 3.18
5145 5646 3.121058 GCAGAAATTTGCGCGATTTTTCA 60.121 39.130 24.37 0.00 33.90 2.69
5146 5647 3.398328 GCAGAAATTTGCGCGATTTTTC 58.602 40.909 12.10 18.79 33.90 2.29
5147 5648 3.438373 GCAGAAATTTGCGCGATTTTT 57.562 38.095 12.10 12.67 33.90 1.94
5181 5692 2.959516 TGAGCAGGAACATACACGAAG 58.040 47.619 0.00 0.00 0.00 3.79
5182 5693 3.610040 ATGAGCAGGAACATACACGAA 57.390 42.857 0.00 0.00 0.00 3.85
5183 5694 4.501400 CCATATGAGCAGGAACATACACGA 60.501 45.833 3.65 0.00 32.90 4.35
5184 5695 3.742882 CCATATGAGCAGGAACATACACG 59.257 47.826 3.65 0.00 32.90 4.49
5195 5707 1.067565 ACGCCGTATCCATATGAGCAG 60.068 52.381 3.65 0.00 0.00 4.24
5196 5708 0.966179 ACGCCGTATCCATATGAGCA 59.034 50.000 3.65 0.00 0.00 4.26
5220 5732 3.178412 TCACATACACTCACCCCTACA 57.822 47.619 0.00 0.00 0.00 2.74
5228 5740 2.672714 GCAGACGTTCACATACACTCA 58.327 47.619 0.00 0.00 0.00 3.41
5229 5741 1.649171 CGCAGACGTTCACATACACTC 59.351 52.381 0.00 0.00 33.53 3.51
5230 5742 1.698165 CGCAGACGTTCACATACACT 58.302 50.000 0.00 0.00 33.53 3.55
5249 5775 6.970613 ACCTTCTTTTCAAATCACGTACAAAC 59.029 34.615 0.00 0.00 0.00 2.93
5256 5782 5.619607 CACGTAACCTTCTTTTCAAATCACG 59.380 40.000 0.00 0.00 0.00 4.35
5257 5783 5.912955 CCACGTAACCTTCTTTTCAAATCAC 59.087 40.000 0.00 0.00 0.00 3.06
5265 5797 4.383173 ACGAATCCACGTAACCTTCTTTT 58.617 39.130 0.00 0.00 44.72 2.27
5275 5807 4.602159 GCCCAACGAATCCACGTA 57.398 55.556 0.00 0.00 45.83 3.57
5311 5843 4.023291 ACACACAAAATGAGGGAAACACT 58.977 39.130 0.00 0.00 0.00 3.55
5318 5850 1.888512 CTCCCACACACAAAATGAGGG 59.111 52.381 1.42 1.42 38.77 4.30
5319 5851 2.554032 GTCTCCCACACACAAAATGAGG 59.446 50.000 0.00 0.00 0.00 3.86
5325 5857 2.033372 TCTACGTCTCCCACACACAAA 58.967 47.619 0.00 0.00 0.00 2.83
5347 5879 2.484241 GGGGTTTTCGGTCGTGCTATAT 60.484 50.000 0.00 0.00 0.00 0.86
5348 5880 1.134729 GGGGTTTTCGGTCGTGCTATA 60.135 52.381 0.00 0.00 0.00 1.31
5349 5881 0.392060 GGGGTTTTCGGTCGTGCTAT 60.392 55.000 0.00 0.00 0.00 2.97
5350 5882 1.004679 GGGGTTTTCGGTCGTGCTA 60.005 57.895 0.00 0.00 0.00 3.49
5351 5883 2.281276 GGGGTTTTCGGTCGTGCT 60.281 61.111 0.00 0.00 0.00 4.40
5352 5884 2.592287 TGGGGTTTTCGGTCGTGC 60.592 61.111 0.00 0.00 0.00 5.34
5353 5885 1.964373 CCTGGGGTTTTCGGTCGTG 60.964 63.158 0.00 0.00 0.00 4.35
5355 5887 1.375523 CTCCTGGGGTTTTCGGTCG 60.376 63.158 0.00 0.00 0.00 4.79
5369 5906 3.842923 CAGATGACGCGCCCTCCT 61.843 66.667 5.73 0.00 0.00 3.69
5382 5919 1.856873 TGGGGTTTGGGAGGCAGAT 60.857 57.895 0.00 0.00 0.00 2.90
5398 5935 4.351054 GTGGGGGCTGGACACTGG 62.351 72.222 0.00 0.00 32.58 4.00
5399 5936 4.351054 GGTGGGGGCTGGACACTG 62.351 72.222 0.00 0.00 35.53 3.66
5418 5955 3.782443 GTAGGCGAGGGTGGTGGG 61.782 72.222 0.00 0.00 0.00 4.61
5419 5956 3.782443 GGTAGGCGAGGGTGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
5420 5957 4.143333 CGGTAGGCGAGGGTGGTG 62.143 72.222 0.00 0.00 0.00 4.17
5430 5967 2.202892 CGGAAGGAAGCGGTAGGC 60.203 66.667 0.00 0.00 44.05 3.93
5431 5968 2.202892 GCGGAAGGAAGCGGTAGG 60.203 66.667 0.00 0.00 0.00 3.18
5432 5969 2.202892 GGCGGAAGGAAGCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
5433 5970 4.137872 CGGCGGAAGGAAGCGGTA 62.138 66.667 0.00 0.00 0.00 4.02
5496 6033 3.607987 CGTCGAAGATGTCGCCGC 61.608 66.667 0.00 0.00 44.72 6.53
5501 6038 0.982673 CAACCGTCGTCGAAGATGTC 59.017 55.000 17.50 0.00 45.22 3.06
5502 6039 0.388134 CCAACCGTCGTCGAAGATGT 60.388 55.000 17.50 9.62 45.22 3.06
5503 6040 0.388134 ACCAACCGTCGTCGAAGATG 60.388 55.000 12.95 12.95 46.63 2.90
5504 6041 0.388134 CACCAACCGTCGTCGAAGAT 60.388 55.000 9.88 0.00 40.67 2.40
5505 6042 1.008194 CACCAACCGTCGTCGAAGA 60.008 57.895 9.88 0.00 39.71 2.87
5506 6043 2.019951 CCACCAACCGTCGTCGAAG 61.020 63.158 2.98 0.00 39.71 3.79
5507 6044 2.027897 CCACCAACCGTCGTCGAA 59.972 61.111 2.98 0.00 39.71 3.71
5508 6045 3.980989 CCCACCAACCGTCGTCGA 61.981 66.667 2.98 0.00 39.71 4.20
5509 6046 3.909258 CTCCCACCAACCGTCGTCG 62.909 68.421 0.00 0.00 0.00 5.12
5510 6047 2.048503 CTCCCACCAACCGTCGTC 60.049 66.667 0.00 0.00 0.00 4.20
5511 6048 3.622826 CCTCCCACCAACCGTCGT 61.623 66.667 0.00 0.00 0.00 4.34
5515 6052 4.323477 TTCGCCTCCCACCAACCG 62.323 66.667 0.00 0.00 0.00 4.44
5516 6053 2.671963 GTTCGCCTCCCACCAACC 60.672 66.667 0.00 0.00 0.00 3.77
5517 6054 2.671963 GGTTCGCCTCCCACCAAC 60.672 66.667 0.00 0.00 0.00 3.77
5518 6055 3.172106 TGGTTCGCCTCCCACCAA 61.172 61.111 0.00 0.00 37.66 3.67
5519 6056 3.636231 CTGGTTCGCCTCCCACCA 61.636 66.667 0.00 0.00 38.30 4.17
5521 6058 4.329545 TGCTGGTTCGCCTCCCAC 62.330 66.667 0.00 0.00 38.36 4.61
5522 6059 4.020617 CTGCTGGTTCGCCTCCCA 62.021 66.667 0.00 0.00 38.36 4.37
5523 6060 3.959991 GACTGCTGGTTCGCCTCCC 62.960 68.421 0.00 0.00 38.36 4.30
5524 6061 2.435059 GACTGCTGGTTCGCCTCC 60.435 66.667 0.00 0.00 38.36 4.30
5525 6062 2.435059 GGACTGCTGGTTCGCCTC 60.435 66.667 0.00 0.00 38.36 4.70
5526 6063 4.021925 GGGACTGCTGGTTCGCCT 62.022 66.667 0.00 0.00 38.36 5.52
5527 6064 3.959991 GAGGGACTGCTGGTTCGCC 62.960 68.421 0.00 0.00 41.55 5.54
5528 6065 2.435059 GAGGGACTGCTGGTTCGC 60.435 66.667 0.00 0.00 41.55 4.70
5529 6066 2.125912 CGAGGGACTGCTGGTTCG 60.126 66.667 0.00 0.00 41.55 3.95
5530 6067 1.079750 GTCGAGGGACTGCTGGTTC 60.080 63.158 0.00 0.00 41.55 3.62
5531 6068 1.407656 TTGTCGAGGGACTGCTGGTT 61.408 55.000 0.00 0.00 41.55 3.67
5532 6069 1.837051 TTGTCGAGGGACTGCTGGT 60.837 57.895 0.00 0.00 41.55 4.00
5533 6070 1.374758 GTTGTCGAGGGACTGCTGG 60.375 63.158 0.00 0.00 41.55 4.85
5534 6071 0.036952 ATGTTGTCGAGGGACTGCTG 60.037 55.000 0.00 0.00 41.55 4.41
5535 6072 0.247736 GATGTTGTCGAGGGACTGCT 59.752 55.000 0.00 0.00 41.55 4.24
5536 6073 0.247736 AGATGTTGTCGAGGGACTGC 59.752 55.000 0.00 0.00 41.55 4.40
5537 6074 2.001812 CAGATGTTGTCGAGGGACTG 57.998 55.000 0.00 0.00 41.55 3.51
5539 6076 0.741221 GGCAGATGTTGTCGAGGGAC 60.741 60.000 0.00 0.00 43.71 4.46
5540 6077 1.596934 GGCAGATGTTGTCGAGGGA 59.403 57.895 0.00 0.00 0.00 4.20
5541 6078 4.208632 GGCAGATGTTGTCGAGGG 57.791 61.111 0.00 0.00 0.00 4.30
5546 6083 2.456119 CCTCGCGGCAGATGTTGTC 61.456 63.158 6.13 0.00 0.00 3.18
5547 6084 2.434884 CCTCGCGGCAGATGTTGT 60.435 61.111 6.13 0.00 0.00 3.32
5558 6095 4.856607 GTTCTCCTCGGCCTCGCG 62.857 72.222 0.00 0.00 36.13 5.87
5559 6096 3.418744 GAGTTCTCCTCGGCCTCGC 62.419 68.421 0.00 0.00 36.13 5.03
5560 6097 2.776913 GGAGTTCTCCTCGGCCTCG 61.777 68.421 11.20 0.00 41.46 4.63
5561 6098 2.776913 CGGAGTTCTCCTCGGCCTC 61.777 68.421 15.60 0.00 41.46 4.70
5562 6099 2.756283 CGGAGTTCTCCTCGGCCT 60.756 66.667 15.60 0.00 41.46 5.19
5565 6102 2.756283 AGGCGGAGTTCTCCTCGG 60.756 66.667 15.60 3.19 41.46 4.63
5566 6103 2.776913 GGAGGCGGAGTTCTCCTCG 61.777 68.421 15.60 5.86 45.57 4.63
5567 6104 2.428085 GGGAGGCGGAGTTCTCCTC 61.428 68.421 15.60 0.00 44.79 3.71
5568 6105 2.364448 GGGAGGCGGAGTTCTCCT 60.364 66.667 15.60 3.54 44.79 3.69
5569 6106 3.839432 CGGGAGGCGGAGTTCTCC 61.839 72.222 8.66 8.66 44.73 3.71
5570 6107 4.516195 GCGGGAGGCGGAGTTCTC 62.516 72.222 0.00 0.00 0.00 2.87
5579 6116 4.858680 GCTAGGGTTGCGGGAGGC 62.859 72.222 0.00 0.00 43.96 4.70
5580 6117 3.399181 TGCTAGGGTTGCGGGAGG 61.399 66.667 0.00 0.00 0.00 4.30
5581 6118 2.125106 GTGCTAGGGTTGCGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
5582 6119 3.712907 GGTGCTAGGGTTGCGGGA 61.713 66.667 0.00 0.00 0.00 5.14
5586 6123 4.715523 TGGCGGTGCTAGGGTTGC 62.716 66.667 0.00 0.00 0.00 4.17
5587 6124 2.746277 GTGGCGGTGCTAGGGTTG 60.746 66.667 0.00 0.00 0.00 3.77
5588 6125 4.029809 GGTGGCGGTGCTAGGGTT 62.030 66.667 0.00 0.00 0.00 4.11
5658 6195 4.787280 AGGGAGGAGGGCACGAGG 62.787 72.222 0.00 0.00 0.00 4.63
5659 6196 3.151022 GAGGGAGGAGGGCACGAG 61.151 72.222 0.00 0.00 0.00 4.18
5660 6197 4.779733 GGAGGGAGGAGGGCACGA 62.780 72.222 0.00 0.00 0.00 4.35
5661 6198 4.787280 AGGAGGGAGGAGGGCACG 62.787 72.222 0.00 0.00 0.00 5.34
5662 6199 2.766229 GAGGAGGGAGGAGGGCAC 60.766 72.222 0.00 0.00 0.00 5.01
5663 6200 4.095400 GGAGGAGGGAGGAGGGCA 62.095 72.222 0.00 0.00 0.00 5.36
5715 6252 2.758737 AAGGAGGGTACGAGGCGG 60.759 66.667 0.00 0.00 0.00 6.13
5716 6253 2.806237 GAAGGAGGGTACGAGGCG 59.194 66.667 0.00 0.00 0.00 5.52
5717 6254 2.002509 GACGAAGGAGGGTACGAGGC 62.003 65.000 0.00 0.00 0.00 4.70
5718 6255 1.382692 GGACGAAGGAGGGTACGAGG 61.383 65.000 0.00 0.00 0.00 4.63
5719 6256 0.394080 AGGACGAAGGAGGGTACGAG 60.394 60.000 0.00 0.00 0.00 4.18
5720 6257 0.393537 GAGGACGAAGGAGGGTACGA 60.394 60.000 0.00 0.00 0.00 3.43
5721 6258 1.382692 GGAGGACGAAGGAGGGTACG 61.383 65.000 0.00 0.00 0.00 3.67
5722 6259 2.502633 GGAGGACGAAGGAGGGTAC 58.497 63.158 0.00 0.00 0.00 3.34
5779 6316 3.256833 GCGGCGAATGCATTTGGC 61.257 61.111 33.14 33.14 45.35 4.52
5780 6317 2.160221 GTGCGGCGAATGCATTTGG 61.160 57.895 24.85 15.84 45.34 3.28
5781 6318 2.160221 GGTGCGGCGAATGCATTTG 61.160 57.895 20.60 20.60 45.34 2.32
5782 6319 2.181525 GGTGCGGCGAATGCATTT 59.818 55.556 14.33 0.00 45.34 2.32
5783 6320 3.825611 GGGTGCGGCGAATGCATT 61.826 61.111 12.83 12.83 45.34 3.56
5795 6332 1.614241 TAGAAGGGAGAAGCGGGTGC 61.614 60.000 0.00 0.00 43.24 5.01
5796 6333 0.175989 GTAGAAGGGAGAAGCGGGTG 59.824 60.000 0.00 0.00 0.00 4.61
5797 6334 0.976590 GGTAGAAGGGAGAAGCGGGT 60.977 60.000 0.00 0.00 0.00 5.28
5798 6335 0.976073 TGGTAGAAGGGAGAAGCGGG 60.976 60.000 0.00 0.00 0.00 6.13
5799 6336 0.461961 CTGGTAGAAGGGAGAAGCGG 59.538 60.000 0.00 0.00 0.00 5.52
5800 6337 0.179097 GCTGGTAGAAGGGAGAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
5801 6338 0.179234 GGCTGGTAGAAGGGAGAAGC 59.821 60.000 0.00 0.00 0.00 3.86
5802 6339 1.484240 CAGGCTGGTAGAAGGGAGAAG 59.516 57.143 6.61 0.00 0.00 2.85
5803 6340 1.573108 CAGGCTGGTAGAAGGGAGAA 58.427 55.000 6.61 0.00 0.00 2.87
5804 6341 0.978146 GCAGGCTGGTAGAAGGGAGA 60.978 60.000 17.64 0.00 0.00 3.71
5805 6342 1.524482 GCAGGCTGGTAGAAGGGAG 59.476 63.158 17.64 0.00 0.00 4.30
5806 6343 1.995626 GGCAGGCTGGTAGAAGGGA 60.996 63.158 17.64 0.00 0.00 4.20
5807 6344 2.592308 GGCAGGCTGGTAGAAGGG 59.408 66.667 17.64 0.00 0.00 3.95
5808 6345 2.187946 CGGCAGGCTGGTAGAAGG 59.812 66.667 17.64 0.00 0.00 3.46
5809 6346 2.512515 GCGGCAGGCTGGTAGAAG 60.513 66.667 17.64 0.00 39.11 2.85
5810 6347 4.096003 GGCGGCAGGCTGGTAGAA 62.096 66.667 17.64 0.00 42.94 2.10
5882 6419 3.358076 GAGGCGAGAAGTGGACGGG 62.358 68.421 0.00 0.00 0.00 5.28
5883 6420 2.182030 GAGGCGAGAAGTGGACGG 59.818 66.667 0.00 0.00 0.00 4.79
5884 6421 2.182030 GGAGGCGAGAAGTGGACG 59.818 66.667 0.00 0.00 0.00 4.79
5885 6422 2.232298 CTGGGAGGCGAGAAGTGGAC 62.232 65.000 0.00 0.00 0.00 4.02
5886 6423 1.984570 CTGGGAGGCGAGAAGTGGA 60.985 63.158 0.00 0.00 0.00 4.02
5887 6424 2.581354 CTGGGAGGCGAGAAGTGG 59.419 66.667 0.00 0.00 0.00 4.00
5888 6425 2.581354 CCTGGGAGGCGAGAAGTG 59.419 66.667 0.00 0.00 0.00 3.16
5889 6426 2.685380 CCCTGGGAGGCGAGAAGT 60.685 66.667 7.01 0.00 32.73 3.01
5890 6427 2.364317 TCCCTGGGAGGCGAGAAG 60.364 66.667 12.53 0.00 32.73 2.85
5891 6428 2.364317 CTCCCTGGGAGGCGAGAA 60.364 66.667 31.49 0.28 45.43 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.