Multiple sequence alignment - TraesCS6A01G086700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G086700 chr6A 100.000 3150 0 0 1 3150 55366257 55363108 0.000000e+00 5818.0
1 TraesCS6A01G086700 chr6A 82.445 319 41 4 684 987 36947741 36948059 6.700000e-67 265.0
2 TraesCS6A01G086700 chr6A 90.000 100 9 1 2712 2810 55363452 55363353 9.170000e-26 128.0
3 TraesCS6A01G086700 chr6A 90.000 100 9 1 2806 2905 55363546 55363448 9.170000e-26 128.0
4 TraesCS6A01G086700 chr4D 90.508 1633 113 18 382 2003 159640288 159638687 0.000000e+00 2119.0
5 TraesCS6A01G086700 chr4D 92.730 674 47 2 2009 2681 159637812 159637140 0.000000e+00 972.0
6 TraesCS6A01G086700 chr4D 96.146 467 18 0 2676 3142 159637115 159636649 0.000000e+00 763.0
7 TraesCS6A01G086700 chr4D 91.489 94 8 0 2717 2810 159636979 159636886 2.550000e-26 130.0
8 TraesCS6A01G086700 chr4D 89.706 68 7 0 382 449 117420772 117420705 1.560000e-13 87.9
9 TraesCS6A01G086700 chr4D 93.182 44 3 0 382 425 346199276 346199319 7.290000e-07 65.8
10 TraesCS6A01G086700 chr1B 89.919 615 47 8 1661 2261 320989422 320990035 0.000000e+00 778.0
11 TraesCS6A01G086700 chr1B 92.053 453 30 3 2695 3144 320990471 320990920 1.590000e-177 632.0
12 TraesCS6A01G086700 chr1B 89.450 436 37 4 1234 1661 320988855 320989289 2.760000e-150 542.0
13 TraesCS6A01G086700 chr1B 90.816 392 35 1 2291 2681 320990027 320990418 1.000000e-144 523.0
14 TraesCS6A01G086700 chr1B 88.435 147 15 2 841 986 144793970 144793825 3.230000e-40 176.0
15 TraesCS6A01G086700 chr1B 93.750 80 5 0 3065 3144 320990952 320991031 1.530000e-23 121.0
16 TraesCS6A01G086700 chr1B 88.000 100 11 1 2806 2905 320990488 320990586 1.990000e-22 117.0
17 TraesCS6A01G086700 chr7D 89.088 614 52 8 1661 2261 381871201 381870590 0.000000e+00 749.0
18 TraesCS6A01G086700 chr7D 88.474 616 54 9 1661 2261 381859744 381860357 0.000000e+00 728.0
19 TraesCS6A01G086700 chr7D 91.611 453 31 4 2695 3144 381870154 381869706 1.240000e-173 619.0
20 TraesCS6A01G086700 chr7D 91.410 454 31 7 2695 3144 381868275 381868724 1.610000e-172 616.0
21 TraesCS6A01G086700 chr7D 88.303 436 42 4 1234 1661 381859177 381859611 6.020000e-142 514.0
22 TraesCS6A01G086700 chr7D 89.796 392 39 1 2291 2681 381870598 381870207 4.690000e-138 501.0
23 TraesCS6A01G086700 chr7D 87.615 436 44 5 1234 1661 381871767 381871334 6.070000e-137 497.0
24 TraesCS6A01G086700 chr7D 88.015 267 31 1 2291 2557 381860349 381860614 6.560000e-82 315.0
25 TraesCS6A01G086700 chr7D 84.342 281 32 2 684 964 514661842 514661574 6.700000e-67 265.0
26 TraesCS6A01G086700 chr7D 93.333 120 7 1 2563 2681 381868103 381868222 3.230000e-40 176.0
27 TraesCS6A01G086700 chr7D 93.750 80 5 0 3065 3144 381868756 381868835 1.530000e-23 121.0
28 TraesCS6A01G086700 chr7D 87.000 100 12 1 2806 2905 381868292 381868390 9.240000e-21 111.0
29 TraesCS6A01G086700 chr7D 87.000 100 12 1 2806 2905 381870137 381870039 9.240000e-21 111.0
30 TraesCS6A01G086700 chr7D 81.915 94 15 2 382 474 308586528 308586620 9.370000e-11 78.7
31 TraesCS6A01G086700 chr7A 87.500 488 60 1 2188 2675 711557078 711557564 2.120000e-156 562.0
32 TraesCS6A01G086700 chr7A 86.667 285 33 5 1017 1299 711556745 711557026 8.480000e-81 311.0
33 TraesCS6A01G086700 chr7A 82.133 375 33 15 2691 3062 711557619 711557962 1.110000e-74 291.0
34 TraesCS6A01G086700 chr7A 82.979 94 13 3 2716 2806 711557729 711557822 7.240000e-12 82.4
35 TraesCS6A01G086700 chrUn 89.003 291 24 4 1 284 21539710 21539999 1.390000e-93 353.0
36 TraesCS6A01G086700 chr6B 88.112 286 31 2 1 284 100162718 100163002 1.400000e-88 337.0
37 TraesCS6A01G086700 chr6B 85.034 294 34 2 684 977 663173881 663173598 1.110000e-74 291.0
38 TraesCS6A01G086700 chr6B 83.544 316 37 6 687 987 68292495 68292810 6.650000e-72 281.0
39 TraesCS6A01G086700 chr6B 86.875 160 18 2 701 860 264289 264133 3.230000e-40 176.0
40 TraesCS6A01G086700 chr6B 87.097 62 8 0 382 443 566796580 566796519 1.570000e-08 71.3
41 TraesCS6A01G086700 chr2D 90.411 219 21 0 684 902 245324967 245325185 3.980000e-74 289.0
42 TraesCS6A01G086700 chr2D 95.455 44 2 0 382 425 628840651 628840694 1.570000e-08 71.3
43 TraesCS6A01G086700 chr6D 84.354 294 36 5 684 977 62244322 62244039 2.390000e-71 279.0
44 TraesCS6A01G086700 chr5B 86.777 242 32 0 746 987 415277172 415276931 1.440000e-68 270.0
45 TraesCS6A01G086700 chr5B 81.853 259 35 6 718 974 384320621 384320373 1.150000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G086700 chr6A 55363108 55366257 3149 True 2024.666667 5818 93.333333 1 3150 3 chr6A.!!$R1 3149
1 TraesCS6A01G086700 chr4D 159636649 159640288 3639 True 996.000000 2119 92.718250 382 3142 4 chr4D.!!$R2 2760
2 TraesCS6A01G086700 chr1B 320988855 320991031 2176 False 452.166667 778 90.664667 1234 3144 6 chr1B.!!$F1 1910
3 TraesCS6A01G086700 chr7D 381859177 381860614 1437 False 519.000000 728 88.264000 1234 2557 3 chr7D.!!$F2 1323
4 TraesCS6A01G086700 chr7D 381869706 381871767 2061 True 495.400000 749 89.022000 1234 3144 5 chr7D.!!$R2 1910
5 TraesCS6A01G086700 chr7D 381868103 381868835 732 False 256.000000 616 91.373250 2563 3144 4 chr7D.!!$F3 581
6 TraesCS6A01G086700 chr7A 711556745 711557962 1217 False 311.600000 562 84.819750 1017 3062 4 chr7A.!!$F1 2045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.031857 TGCCAAAATGAGCAACCACG 59.968 50.0 0.0 0.0 35.69 4.94 F
358 359 0.031994 GCCAAAATGAGCAACCACGT 59.968 50.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1817 0.257039 AGGCCTTTAGCACCCAGATG 59.743 55.0 0.0 0.0 46.5 2.90 R
2281 3310 0.811616 GCTCCATACCTCAACCAGCG 60.812 60.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.197592 TGGGAAAGAAATCTAGTAGTTGTACA 57.802 34.615 0.00 0.00 0.00 2.90
26 27 8.092687 TGGGAAAGAAATCTAGTAGTTGTACAC 58.907 37.037 0.00 0.00 0.00 2.90
27 28 8.092687 GGGAAAGAAATCTAGTAGTTGTACACA 58.907 37.037 0.00 0.00 0.00 3.72
28 29 8.923683 GGAAAGAAATCTAGTAGTTGTACACAC 58.076 37.037 0.00 0.00 0.00 3.82
29 30 9.472361 GAAAGAAATCTAGTAGTTGTACACACA 57.528 33.333 0.00 0.00 0.00 3.72
30 31 9.826574 AAAGAAATCTAGTAGTTGTACACACAA 57.173 29.630 0.00 0.00 42.39 3.33
31 32 9.998106 AAGAAATCTAGTAGTTGTACACACAAT 57.002 29.630 0.00 0.00 46.03 2.71
32 33 9.640963 AGAAATCTAGTAGTTGTACACACAATC 57.359 33.333 0.00 0.00 46.03 2.67
33 34 9.640963 GAAATCTAGTAGTTGTACACACAATCT 57.359 33.333 0.00 1.29 46.03 2.40
34 35 9.640963 AAATCTAGTAGTTGTACACACAATCTC 57.359 33.333 0.00 0.00 46.03 2.75
35 36 7.754851 TCTAGTAGTTGTACACACAATCTCA 57.245 36.000 0.00 0.00 46.03 3.27
36 37 8.173542 TCTAGTAGTTGTACACACAATCTCAA 57.826 34.615 0.00 0.00 46.03 3.02
37 38 8.803235 TCTAGTAGTTGTACACACAATCTCAAT 58.197 33.333 0.00 0.00 46.03 2.57
38 39 7.891183 AGTAGTTGTACACACAATCTCAATC 57.109 36.000 0.00 0.00 46.03 2.67
39 40 7.441836 AGTAGTTGTACACACAATCTCAATCA 58.558 34.615 0.00 0.00 46.03 2.57
40 41 6.791887 AGTTGTACACACAATCTCAATCAG 57.208 37.500 0.00 0.00 46.03 2.90
41 42 6.524734 AGTTGTACACACAATCTCAATCAGA 58.475 36.000 0.00 0.00 46.03 3.27
42 43 6.425114 AGTTGTACACACAATCTCAATCAGAC 59.575 38.462 0.00 0.00 46.03 3.51
43 44 5.237815 TGTACACACAATCTCAATCAGACC 58.762 41.667 0.00 0.00 32.26 3.85
44 45 3.329386 ACACACAATCTCAATCAGACCG 58.671 45.455 0.00 0.00 32.26 4.79
45 46 3.244215 ACACACAATCTCAATCAGACCGT 60.244 43.478 0.00 0.00 32.26 4.83
46 47 4.021456 ACACACAATCTCAATCAGACCGTA 60.021 41.667 0.00 0.00 32.26 4.02
47 48 5.111989 CACACAATCTCAATCAGACCGTAT 58.888 41.667 0.00 0.00 32.26 3.06
48 49 5.233050 CACACAATCTCAATCAGACCGTATC 59.767 44.000 0.00 0.00 32.26 2.24
49 50 5.127845 ACACAATCTCAATCAGACCGTATCT 59.872 40.000 0.00 0.00 38.66 1.98
50 51 6.045318 CACAATCTCAATCAGACCGTATCTT 58.955 40.000 0.00 0.00 34.41 2.40
51 52 6.536582 CACAATCTCAATCAGACCGTATCTTT 59.463 38.462 0.00 0.00 34.41 2.52
52 53 7.065085 CACAATCTCAATCAGACCGTATCTTTT 59.935 37.037 0.00 0.00 34.41 2.27
53 54 7.278868 ACAATCTCAATCAGACCGTATCTTTTC 59.721 37.037 0.00 0.00 34.41 2.29
54 55 6.531503 TCTCAATCAGACCGTATCTTTTCT 57.468 37.500 0.00 0.00 34.41 2.52
55 56 6.565234 TCTCAATCAGACCGTATCTTTTCTC 58.435 40.000 0.00 0.00 34.41 2.87
56 57 5.340803 TCAATCAGACCGTATCTTTTCTCG 58.659 41.667 0.00 0.00 34.41 4.04
57 58 3.146618 TCAGACCGTATCTTTTCTCGC 57.853 47.619 0.00 0.00 34.41 5.03
58 59 2.753452 TCAGACCGTATCTTTTCTCGCT 59.247 45.455 0.00 0.00 34.41 4.93
59 60 3.192844 TCAGACCGTATCTTTTCTCGCTT 59.807 43.478 0.00 0.00 34.41 4.68
60 61 3.927142 CAGACCGTATCTTTTCTCGCTTT 59.073 43.478 0.00 0.00 34.41 3.51
61 62 4.389077 CAGACCGTATCTTTTCTCGCTTTT 59.611 41.667 0.00 0.00 34.41 2.27
62 63 5.575606 CAGACCGTATCTTTTCTCGCTTTTA 59.424 40.000 0.00 0.00 34.41 1.52
63 64 5.575995 AGACCGTATCTTTTCTCGCTTTTAC 59.424 40.000 0.00 0.00 31.62 2.01
64 65 4.628766 ACCGTATCTTTTCTCGCTTTTACC 59.371 41.667 0.00 0.00 0.00 2.85
65 66 4.868734 CCGTATCTTTTCTCGCTTTTACCT 59.131 41.667 0.00 0.00 0.00 3.08
66 67 6.038356 CCGTATCTTTTCTCGCTTTTACCTA 58.962 40.000 0.00 0.00 0.00 3.08
67 68 6.700520 CCGTATCTTTTCTCGCTTTTACCTAT 59.299 38.462 0.00 0.00 0.00 2.57
68 69 7.306632 CCGTATCTTTTCTCGCTTTTACCTATG 60.307 40.741 0.00 0.00 0.00 2.23
69 70 6.927294 ATCTTTTCTCGCTTTTACCTATGG 57.073 37.500 0.00 0.00 0.00 2.74
70 71 6.045072 TCTTTTCTCGCTTTTACCTATGGA 57.955 37.500 0.00 0.00 0.00 3.41
71 72 6.650120 TCTTTTCTCGCTTTTACCTATGGAT 58.350 36.000 0.00 0.00 0.00 3.41
72 73 7.110155 TCTTTTCTCGCTTTTACCTATGGATT 58.890 34.615 0.00 0.00 0.00 3.01
73 74 6.920569 TTTCTCGCTTTTACCTATGGATTC 57.079 37.500 0.00 0.00 0.00 2.52
74 75 4.957296 TCTCGCTTTTACCTATGGATTCC 58.043 43.478 0.00 0.00 0.00 3.01
75 76 4.407621 TCTCGCTTTTACCTATGGATTCCA 59.592 41.667 8.08 8.08 38.19 3.53
76 77 5.071788 TCTCGCTTTTACCTATGGATTCCAT 59.928 40.000 21.53 21.53 46.99 3.41
77 78 5.690865 TCGCTTTTACCTATGGATTCCATT 58.309 37.500 22.87 8.42 42.23 3.16
78 79 6.126409 TCGCTTTTACCTATGGATTCCATTT 58.874 36.000 22.87 10.68 42.23 2.32
79 80 6.262273 TCGCTTTTACCTATGGATTCCATTTC 59.738 38.462 22.87 2.68 42.23 2.17
80 81 6.515035 CGCTTTTACCTATGGATTCCATTTCC 60.515 42.308 22.87 2.44 42.23 3.13
81 82 6.323739 GCTTTTACCTATGGATTCCATTTCCA 59.676 38.462 22.87 4.69 42.23 3.53
93 94 8.838741 TGGATTCCATTTCCATGATATATCTCA 58.161 33.333 13.79 0.00 38.35 3.27
94 95 9.690913 GGATTCCATTTCCATGATATATCTCAA 57.309 33.333 13.79 0.00 33.21 3.02
99 100 9.901172 CCATTTCCATGATATATCTCAATCTCA 57.099 33.333 13.79 0.00 31.07 3.27
102 103 9.730705 TTTCCATGATATATCTCAATCTCAACC 57.269 33.333 13.79 0.00 0.00 3.77
103 104 7.855375 TCCATGATATATCTCAATCTCAACCC 58.145 38.462 13.79 0.00 0.00 4.11
104 105 7.458806 TCCATGATATATCTCAATCTCAACCCA 59.541 37.037 13.79 0.00 0.00 4.51
105 106 8.105197 CCATGATATATCTCAATCTCAACCCAA 58.895 37.037 13.79 0.00 0.00 4.12
106 107 9.682465 CATGATATATCTCAATCTCAACCCAAT 57.318 33.333 13.79 0.00 0.00 3.16
107 108 9.902684 ATGATATATCTCAATCTCAACCCAATC 57.097 33.333 13.79 0.00 0.00 2.67
108 109 8.883302 TGATATATCTCAATCTCAACCCAATCA 58.117 33.333 13.79 0.00 0.00 2.57
109 110 9.730705 GATATATCTCAATCTCAACCCAATCAA 57.269 33.333 5.42 0.00 0.00 2.57
111 112 6.770746 ATCTCAATCTCAACCCAATCAAAG 57.229 37.500 0.00 0.00 0.00 2.77
112 113 5.634118 TCTCAATCTCAACCCAATCAAAGT 58.366 37.500 0.00 0.00 0.00 2.66
113 114 6.070656 TCTCAATCTCAACCCAATCAAAGTT 58.929 36.000 0.00 0.00 0.00 2.66
114 115 6.550854 TCTCAATCTCAACCCAATCAAAGTTT 59.449 34.615 0.00 0.00 0.00 2.66
115 116 7.069826 TCTCAATCTCAACCCAATCAAAGTTTT 59.930 33.333 0.00 0.00 0.00 2.43
116 117 7.563906 TCAATCTCAACCCAATCAAAGTTTTT 58.436 30.769 0.00 0.00 0.00 1.94
117 118 7.710475 TCAATCTCAACCCAATCAAAGTTTTTC 59.290 33.333 0.00 0.00 0.00 2.29
118 119 5.912892 TCTCAACCCAATCAAAGTTTTTCC 58.087 37.500 0.00 0.00 0.00 3.13
119 120 5.660864 TCTCAACCCAATCAAAGTTTTTCCT 59.339 36.000 0.00 0.00 0.00 3.36
120 121 6.836527 TCTCAACCCAATCAAAGTTTTTCCTA 59.163 34.615 0.00 0.00 0.00 2.94
121 122 6.811954 TCAACCCAATCAAAGTTTTTCCTAC 58.188 36.000 0.00 0.00 0.00 3.18
122 123 5.447624 ACCCAATCAAAGTTTTTCCTACG 57.552 39.130 0.00 0.00 0.00 3.51
123 124 4.891168 ACCCAATCAAAGTTTTTCCTACGT 59.109 37.500 0.00 0.00 0.00 3.57
124 125 5.361571 ACCCAATCAAAGTTTTTCCTACGTT 59.638 36.000 0.00 0.00 0.00 3.99
125 126 5.689961 CCCAATCAAAGTTTTTCCTACGTTG 59.310 40.000 0.00 0.00 36.66 4.10
126 127 6.460399 CCCAATCAAAGTTTTTCCTACGTTGA 60.460 38.462 0.00 6.77 44.12 3.18
127 128 6.975772 CCAATCAAAGTTTTTCCTACGTTGAA 59.024 34.615 0.00 0.00 43.55 2.69
128 129 7.043656 CCAATCAAAGTTTTTCCTACGTTGAAC 60.044 37.037 0.00 0.00 43.55 3.18
129 130 5.882553 TCAAAGTTTTTCCTACGTTGAACC 58.117 37.500 0.00 0.00 39.73 3.62
130 131 5.415077 TCAAAGTTTTTCCTACGTTGAACCA 59.585 36.000 0.00 0.00 39.73 3.67
131 132 5.900865 AAGTTTTTCCTACGTTGAACCAA 57.099 34.783 0.00 0.00 0.00 3.67
132 133 5.900865 AGTTTTTCCTACGTTGAACCAAA 57.099 34.783 0.00 0.00 0.00 3.28
133 134 6.270156 AGTTTTTCCTACGTTGAACCAAAA 57.730 33.333 0.00 0.00 0.00 2.44
134 135 6.327154 AGTTTTTCCTACGTTGAACCAAAAG 58.673 36.000 0.00 0.00 0.00 2.27
135 136 6.151480 AGTTTTTCCTACGTTGAACCAAAAGA 59.849 34.615 0.00 0.00 0.00 2.52
136 137 6.512342 TTTTCCTACGTTGAACCAAAAGAA 57.488 33.333 0.00 0.00 0.00 2.52
137 138 6.702716 TTTCCTACGTTGAACCAAAAGAAT 57.297 33.333 0.00 0.00 0.00 2.40
138 139 7.804843 TTTCCTACGTTGAACCAAAAGAATA 57.195 32.000 0.00 0.00 0.00 1.75
139 140 7.804843 TTCCTACGTTGAACCAAAAGAATAA 57.195 32.000 0.00 0.00 0.00 1.40
140 141 7.804843 TCCTACGTTGAACCAAAAGAATAAA 57.195 32.000 0.00 0.00 0.00 1.40
141 142 7.641760 TCCTACGTTGAACCAAAAGAATAAAC 58.358 34.615 0.00 0.00 0.00 2.01
142 143 7.499895 TCCTACGTTGAACCAAAAGAATAAACT 59.500 33.333 0.00 0.00 0.00 2.66
143 144 8.132995 CCTACGTTGAACCAAAAGAATAAACTT 58.867 33.333 0.00 0.00 0.00 2.66
144 145 9.511144 CTACGTTGAACCAAAAGAATAAACTTT 57.489 29.630 0.00 0.00 41.09 2.66
145 146 8.402326 ACGTTGAACCAAAAGAATAAACTTTC 57.598 30.769 0.00 0.00 38.86 2.62
146 147 7.490079 ACGTTGAACCAAAAGAATAAACTTTCC 59.510 33.333 0.00 0.00 38.86 3.13
147 148 7.489757 CGTTGAACCAAAAGAATAAACTTTCCA 59.510 33.333 0.00 0.00 38.86 3.53
148 149 8.600625 GTTGAACCAAAAGAATAAACTTTCCAC 58.399 33.333 0.00 0.00 38.86 4.02
149 150 7.269316 TGAACCAAAAGAATAAACTTTCCACC 58.731 34.615 0.00 0.00 38.86 4.61
150 151 7.125053 TGAACCAAAAGAATAAACTTTCCACCT 59.875 33.333 0.00 0.00 38.86 4.00
151 152 7.432148 ACCAAAAGAATAAACTTTCCACCTT 57.568 32.000 0.00 0.00 38.86 3.50
152 153 7.497595 ACCAAAAGAATAAACTTTCCACCTTC 58.502 34.615 0.00 0.00 38.86 3.46
153 154 6.640907 CCAAAAGAATAAACTTTCCACCTTCG 59.359 38.462 0.00 0.00 38.86 3.79
154 155 5.372547 AAGAATAAACTTTCCACCTTCGC 57.627 39.130 0.00 0.00 0.00 4.70
155 156 3.435671 AGAATAAACTTTCCACCTTCGCG 59.564 43.478 0.00 0.00 0.00 5.87
156 157 2.529780 TAAACTTTCCACCTTCGCGA 57.470 45.000 3.71 3.71 0.00 5.87
157 158 0.942252 AAACTTTCCACCTTCGCGAC 59.058 50.000 9.15 0.00 0.00 5.19
158 159 0.179067 AACTTTCCACCTTCGCGACA 60.179 50.000 9.15 0.00 0.00 4.35
159 160 0.878961 ACTTTCCACCTTCGCGACAC 60.879 55.000 9.15 0.00 0.00 3.67
160 161 0.878523 CTTTCCACCTTCGCGACACA 60.879 55.000 9.15 0.00 0.00 3.72
161 162 1.155424 TTTCCACCTTCGCGACACAC 61.155 55.000 9.15 0.00 0.00 3.82
162 163 3.403057 CCACCTTCGCGACACACG 61.403 66.667 9.15 0.00 45.66 4.49
163 164 3.403057 CACCTTCGCGACACACGG 61.403 66.667 9.15 7.18 42.83 4.94
164 165 3.598715 ACCTTCGCGACACACGGA 61.599 61.111 9.15 0.00 42.83 4.69
165 166 2.126071 CCTTCGCGACACACGGAT 60.126 61.111 9.15 0.00 42.83 4.18
166 167 1.138036 CCTTCGCGACACACGGATA 59.862 57.895 9.15 0.00 42.83 2.59
167 168 0.248907 CCTTCGCGACACACGGATAT 60.249 55.000 9.15 0.00 42.83 1.63
168 169 1.556564 CTTCGCGACACACGGATATT 58.443 50.000 9.15 0.00 42.83 1.28
169 170 2.542205 CCTTCGCGACACACGGATATTA 60.542 50.000 9.15 0.00 42.83 0.98
170 171 2.847959 TCGCGACACACGGATATTAA 57.152 45.000 3.71 0.00 42.83 1.40
171 172 2.723209 TCGCGACACACGGATATTAAG 58.277 47.619 3.71 0.00 42.83 1.85
172 173 1.189446 CGCGACACACGGATATTAAGC 59.811 52.381 0.00 0.00 42.83 3.09
173 174 2.470821 GCGACACACGGATATTAAGCT 58.529 47.619 0.00 0.00 42.83 3.74
174 175 3.635331 GCGACACACGGATATTAAGCTA 58.365 45.455 0.00 0.00 42.83 3.32
175 176 3.669122 GCGACACACGGATATTAAGCTAG 59.331 47.826 0.00 0.00 42.83 3.42
176 177 4.792057 GCGACACACGGATATTAAGCTAGT 60.792 45.833 0.00 0.00 42.83 2.57
177 178 5.561532 GCGACACACGGATATTAAGCTAGTA 60.562 44.000 0.00 0.00 42.83 1.82
178 179 6.432936 CGACACACGGATATTAAGCTAGTAA 58.567 40.000 0.00 0.00 38.46 2.24
179 180 6.914215 CGACACACGGATATTAAGCTAGTAAA 59.086 38.462 0.00 0.00 38.46 2.01
180 181 7.113124 CGACACACGGATATTAAGCTAGTAAAG 59.887 40.741 0.00 0.00 38.46 1.85
181 182 8.004087 ACACACGGATATTAAGCTAGTAAAGA 57.996 34.615 0.00 0.00 0.00 2.52
182 183 7.919621 ACACACGGATATTAAGCTAGTAAAGAC 59.080 37.037 0.00 0.00 0.00 3.01
183 184 7.919091 CACACGGATATTAAGCTAGTAAAGACA 59.081 37.037 0.00 0.00 0.00 3.41
184 185 7.919621 ACACGGATATTAAGCTAGTAAAGACAC 59.080 37.037 0.00 0.00 0.00 3.67
185 186 7.381678 CACGGATATTAAGCTAGTAAAGACACC 59.618 40.741 0.00 0.00 0.00 4.16
186 187 7.287235 ACGGATATTAAGCTAGTAAAGACACCT 59.713 37.037 0.00 0.00 0.00 4.00
187 188 7.595502 CGGATATTAAGCTAGTAAAGACACCTG 59.404 40.741 0.00 0.00 0.00 4.00
188 189 7.385478 GGATATTAAGCTAGTAAAGACACCTGC 59.615 40.741 0.00 0.00 0.00 4.85
189 190 3.336138 AAGCTAGTAAAGACACCTGCC 57.664 47.619 0.00 0.00 0.00 4.85
190 191 1.204941 AGCTAGTAAAGACACCTGCCG 59.795 52.381 0.00 0.00 0.00 5.69
191 192 1.641577 CTAGTAAAGACACCTGCCGC 58.358 55.000 0.00 0.00 0.00 6.53
192 193 0.970640 TAGTAAAGACACCTGCCGCA 59.029 50.000 0.00 0.00 0.00 5.69
193 194 0.602905 AGTAAAGACACCTGCCGCAC 60.603 55.000 0.00 0.00 0.00 5.34
194 195 1.302192 TAAAGACACCTGCCGCACC 60.302 57.895 0.00 0.00 0.00 5.01
195 196 2.046009 TAAAGACACCTGCCGCACCA 62.046 55.000 0.00 0.00 0.00 4.17
196 197 4.626081 AGACACCTGCCGCACCAC 62.626 66.667 0.00 0.00 0.00 4.16
197 198 4.626081 GACACCTGCCGCACCACT 62.626 66.667 0.00 0.00 0.00 4.00
198 199 4.626081 ACACCTGCCGCACCACTC 62.626 66.667 0.00 0.00 0.00 3.51
199 200 4.624364 CACCTGCCGCACCACTCA 62.624 66.667 0.00 0.00 0.00 3.41
200 201 3.640407 ACCTGCCGCACCACTCAT 61.640 61.111 0.00 0.00 0.00 2.90
201 202 2.821366 CCTGCCGCACCACTCATC 60.821 66.667 0.00 0.00 0.00 2.92
202 203 3.190849 CTGCCGCACCACTCATCG 61.191 66.667 0.00 0.00 0.00 3.84
203 204 3.647649 CTGCCGCACCACTCATCGA 62.648 63.158 0.00 0.00 0.00 3.59
204 205 2.434185 GCCGCACCACTCATCGAA 60.434 61.111 0.00 0.00 0.00 3.71
205 206 2.456119 GCCGCACCACTCATCGAAG 61.456 63.158 0.00 0.00 0.00 3.79
206 207 2.456119 CCGCACCACTCATCGAAGC 61.456 63.158 0.00 0.00 0.00 3.86
207 208 1.737735 CGCACCACTCATCGAAGCA 60.738 57.895 0.00 0.00 0.00 3.91
208 209 1.086067 CGCACCACTCATCGAAGCAT 61.086 55.000 0.00 0.00 0.00 3.79
209 210 1.802508 CGCACCACTCATCGAAGCATA 60.803 52.381 0.00 0.00 0.00 3.14
210 211 2.279741 GCACCACTCATCGAAGCATAA 58.720 47.619 0.00 0.00 0.00 1.90
211 212 2.874701 GCACCACTCATCGAAGCATAAT 59.125 45.455 0.00 0.00 0.00 1.28
212 213 3.313526 GCACCACTCATCGAAGCATAATT 59.686 43.478 0.00 0.00 0.00 1.40
213 214 4.553547 GCACCACTCATCGAAGCATAATTC 60.554 45.833 0.00 0.00 0.00 2.17
214 215 4.813161 CACCACTCATCGAAGCATAATTCT 59.187 41.667 0.00 0.00 0.00 2.40
215 216 5.295292 CACCACTCATCGAAGCATAATTCTT 59.705 40.000 0.00 0.00 0.00 2.52
216 217 5.295292 ACCACTCATCGAAGCATAATTCTTG 59.705 40.000 0.00 0.00 0.00 3.02
217 218 5.525012 CCACTCATCGAAGCATAATTCTTGA 59.475 40.000 0.00 0.00 0.00 3.02
218 219 6.417327 CACTCATCGAAGCATAATTCTTGAC 58.583 40.000 0.00 0.00 0.00 3.18
219 220 6.036408 CACTCATCGAAGCATAATTCTTGACA 59.964 38.462 0.00 0.00 0.00 3.58
220 221 6.765036 ACTCATCGAAGCATAATTCTTGACAT 59.235 34.615 0.00 0.00 0.00 3.06
221 222 7.281774 ACTCATCGAAGCATAATTCTTGACATT 59.718 33.333 0.00 0.00 0.00 2.71
222 223 7.988737 TCATCGAAGCATAATTCTTGACATTT 58.011 30.769 0.00 0.00 0.00 2.32
223 224 9.108284 TCATCGAAGCATAATTCTTGACATTTA 57.892 29.630 0.00 0.00 0.00 1.40
224 225 9.720667 CATCGAAGCATAATTCTTGACATTTAA 57.279 29.630 0.00 0.00 0.00 1.52
225 226 9.941664 ATCGAAGCATAATTCTTGACATTTAAG 57.058 29.630 0.00 0.00 0.00 1.85
226 227 8.946085 TCGAAGCATAATTCTTGACATTTAAGT 58.054 29.630 0.00 0.00 0.00 2.24
227 228 9.559958 CGAAGCATAATTCTTGACATTTAAGTT 57.440 29.630 0.00 0.00 0.00 2.66
235 236 9.899226 AATTCTTGACATTTAAGTTCTACTTGC 57.101 29.630 2.45 0.00 39.11 4.01
236 237 8.677148 TTCTTGACATTTAAGTTCTACTTGCT 57.323 30.769 2.45 0.00 39.11 3.91
237 238 8.087982 TCTTGACATTTAAGTTCTACTTGCTG 57.912 34.615 2.45 0.84 39.11 4.41
238 239 6.241207 TGACATTTAAGTTCTACTTGCTGC 57.759 37.500 2.45 0.00 39.11 5.25
239 240 5.181245 TGACATTTAAGTTCTACTTGCTGCC 59.819 40.000 0.00 0.00 39.11 4.85
240 241 5.070001 ACATTTAAGTTCTACTTGCTGCCA 58.930 37.500 0.00 0.00 39.11 4.92
241 242 5.711976 ACATTTAAGTTCTACTTGCTGCCAT 59.288 36.000 0.00 0.00 39.11 4.40
242 243 6.209391 ACATTTAAGTTCTACTTGCTGCCATT 59.791 34.615 0.00 0.00 39.11 3.16
243 244 6.648879 TTTAAGTTCTACTTGCTGCCATTT 57.351 33.333 0.00 0.00 39.11 2.32
244 245 6.648879 TTAAGTTCTACTTGCTGCCATTTT 57.351 33.333 0.00 0.00 39.11 1.82
245 246 4.510038 AGTTCTACTTGCTGCCATTTTG 57.490 40.909 0.00 0.00 0.00 2.44
246 247 2.989166 GTTCTACTTGCTGCCATTTTGC 59.011 45.455 0.00 0.00 0.00 3.68
247 248 2.237643 TCTACTTGCTGCCATTTTGCA 58.762 42.857 0.00 0.00 39.37 4.08
248 249 2.627221 TCTACTTGCTGCCATTTTGCAA 59.373 40.909 0.00 0.00 41.51 4.08
251 252 2.616634 TTGCTGCCATTTTGCAAGAA 57.383 40.000 0.00 0.00 41.51 2.52
252 253 2.616634 TGCTGCCATTTTGCAAGAAA 57.383 40.000 0.00 0.00 41.51 2.52
253 254 3.128852 TGCTGCCATTTTGCAAGAAAT 57.871 38.095 0.00 0.00 41.51 2.17
254 255 2.809119 TGCTGCCATTTTGCAAGAAATG 59.191 40.909 14.38 14.38 43.39 2.32
259 260 2.780714 CATTTTGCAAGAAATGGGGCA 58.219 42.857 13.75 0.00 41.23 5.36
260 261 2.547299 TTTTGCAAGAAATGGGGCAG 57.453 45.000 0.00 0.00 37.59 4.85
261 262 1.422531 TTTGCAAGAAATGGGGCAGT 58.577 45.000 0.00 0.00 37.59 4.40
262 263 1.422531 TTGCAAGAAATGGGGCAGTT 58.577 45.000 0.00 0.00 37.59 3.16
263 264 2.300956 TGCAAGAAATGGGGCAGTTA 57.699 45.000 0.00 0.00 0.00 2.24
264 265 2.603021 TGCAAGAAATGGGGCAGTTAA 58.397 42.857 0.00 0.00 0.00 2.01
265 266 2.968574 TGCAAGAAATGGGGCAGTTAAA 59.031 40.909 0.00 0.00 0.00 1.52
266 267 3.582208 TGCAAGAAATGGGGCAGTTAAAT 59.418 39.130 0.00 0.00 0.00 1.40
267 268 4.041444 TGCAAGAAATGGGGCAGTTAAATT 59.959 37.500 0.00 0.00 0.00 1.82
268 269 5.247110 TGCAAGAAATGGGGCAGTTAAATTA 59.753 36.000 0.00 0.00 0.00 1.40
269 270 5.580691 GCAAGAAATGGGGCAGTTAAATTAC 59.419 40.000 0.00 0.00 0.00 1.89
270 271 6.574269 GCAAGAAATGGGGCAGTTAAATTACT 60.574 38.462 0.00 0.00 0.00 2.24
271 272 6.775594 AGAAATGGGGCAGTTAAATTACTC 57.224 37.500 0.00 0.00 0.00 2.59
272 273 6.252995 AGAAATGGGGCAGTTAAATTACTCA 58.747 36.000 0.00 0.00 0.00 3.41
273 274 6.723977 AGAAATGGGGCAGTTAAATTACTCAA 59.276 34.615 0.00 0.00 0.00 3.02
274 275 7.400052 AGAAATGGGGCAGTTAAATTACTCAAT 59.600 33.333 0.00 0.00 0.00 2.57
275 276 8.602472 AAATGGGGCAGTTAAATTACTCAATA 57.398 30.769 0.00 0.00 0.00 1.90
276 277 8.782137 AATGGGGCAGTTAAATTACTCAATAT 57.218 30.769 0.00 0.00 0.00 1.28
277 278 7.581213 TGGGGCAGTTAAATTACTCAATATG 57.419 36.000 0.00 0.00 0.00 1.78
278 279 6.549364 TGGGGCAGTTAAATTACTCAATATGG 59.451 38.462 0.00 0.00 0.00 2.74
279 280 6.549736 GGGGCAGTTAAATTACTCAATATGGT 59.450 38.462 0.00 0.00 0.00 3.55
280 281 7.722285 GGGGCAGTTAAATTACTCAATATGGTA 59.278 37.037 0.00 0.00 0.00 3.25
281 282 8.565416 GGGCAGTTAAATTACTCAATATGGTAC 58.435 37.037 0.00 0.00 0.00 3.34
293 294 4.825377 TGGTACATGCGATGACCG 57.175 55.556 0.00 0.00 42.21 4.79
294 295 2.194460 TGGTACATGCGATGACCGA 58.806 52.632 0.00 0.00 41.76 4.69
295 296 0.102300 TGGTACATGCGATGACCGAG 59.898 55.000 0.00 0.00 41.76 4.63
296 297 0.384309 GGTACATGCGATGACCGAGA 59.616 55.000 0.00 0.00 41.76 4.04
297 298 1.202371 GGTACATGCGATGACCGAGAA 60.202 52.381 0.00 0.00 41.76 2.87
298 299 2.545952 GGTACATGCGATGACCGAGAAT 60.546 50.000 0.00 0.00 41.76 2.40
299 300 2.315925 ACATGCGATGACCGAGAATT 57.684 45.000 0.00 0.00 41.76 2.17
300 301 2.632377 ACATGCGATGACCGAGAATTT 58.368 42.857 0.00 0.00 41.76 1.82
301 302 3.009723 ACATGCGATGACCGAGAATTTT 58.990 40.909 0.00 0.00 41.76 1.82
302 303 3.440173 ACATGCGATGACCGAGAATTTTT 59.560 39.130 0.00 0.00 41.76 1.94
303 304 4.634004 ACATGCGATGACCGAGAATTTTTA 59.366 37.500 0.00 0.00 41.76 1.52
304 305 5.123186 ACATGCGATGACCGAGAATTTTTAA 59.877 36.000 0.00 0.00 41.76 1.52
305 306 5.811399 TGCGATGACCGAGAATTTTTAAT 57.189 34.783 0.00 0.00 41.76 1.40
306 307 5.568482 TGCGATGACCGAGAATTTTTAATG 58.432 37.500 0.00 0.00 41.76 1.90
307 308 5.352846 TGCGATGACCGAGAATTTTTAATGA 59.647 36.000 0.00 0.00 41.76 2.57
308 309 6.128145 TGCGATGACCGAGAATTTTTAATGAA 60.128 34.615 0.00 0.00 41.76 2.57
309 310 6.745450 GCGATGACCGAGAATTTTTAATGAAA 59.255 34.615 0.00 0.00 41.76 2.69
310 311 7.253321 GCGATGACCGAGAATTTTTAATGAAAC 60.253 37.037 0.00 0.00 41.76 2.78
311 312 7.748683 CGATGACCGAGAATTTTTAATGAAACA 59.251 33.333 0.00 0.00 41.76 2.83
312 313 8.742554 ATGACCGAGAATTTTTAATGAAACAC 57.257 30.769 0.00 0.00 0.00 3.32
313 314 7.936584 TGACCGAGAATTTTTAATGAAACACT 58.063 30.769 0.00 0.00 0.00 3.55
314 315 7.860373 TGACCGAGAATTTTTAATGAAACACTG 59.140 33.333 0.00 0.00 0.00 3.66
315 316 6.640907 ACCGAGAATTTTTAATGAAACACTGC 59.359 34.615 0.00 0.00 0.00 4.40
316 317 6.640499 CCGAGAATTTTTAATGAAACACTGCA 59.360 34.615 0.00 0.00 0.00 4.41
317 318 7.329226 CCGAGAATTTTTAATGAAACACTGCAT 59.671 33.333 0.00 0.00 0.00 3.96
318 319 8.157813 CGAGAATTTTTAATGAAACACTGCATG 58.842 33.333 0.00 0.00 0.00 4.06
319 320 8.891671 AGAATTTTTAATGAAACACTGCATGT 57.108 26.923 0.00 0.00 46.42 3.21
327 328 2.282674 CACTGCATGTGCCACCCT 60.283 61.111 2.07 0.00 40.06 4.34
328 329 1.002257 CACTGCATGTGCCACCCTA 60.002 57.895 2.07 0.00 40.06 3.53
329 330 1.002134 ACTGCATGTGCCACCCTAC 60.002 57.895 2.07 0.00 41.18 3.18
330 331 1.002257 CTGCATGTGCCACCCTACA 60.002 57.895 2.07 0.00 41.18 2.74
331 332 0.608856 CTGCATGTGCCACCCTACAA 60.609 55.000 2.07 0.00 41.18 2.41
332 333 0.178978 TGCATGTGCCACCCTACAAA 60.179 50.000 2.07 0.00 41.18 2.83
333 334 0.965439 GCATGTGCCACCCTACAAAA 59.035 50.000 0.00 0.00 34.31 2.44
334 335 1.067635 GCATGTGCCACCCTACAAAAG 60.068 52.381 0.00 0.00 34.31 2.27
335 336 2.513753 CATGTGCCACCCTACAAAAGA 58.486 47.619 0.00 0.00 0.00 2.52
336 337 2.738587 TGTGCCACCCTACAAAAGAA 57.261 45.000 0.00 0.00 0.00 2.52
337 338 2.303175 TGTGCCACCCTACAAAAGAAC 58.697 47.619 0.00 0.00 0.00 3.01
338 339 2.092103 TGTGCCACCCTACAAAAGAACT 60.092 45.455 0.00 0.00 0.00 3.01
339 340 2.293399 GTGCCACCCTACAAAAGAACTG 59.707 50.000 0.00 0.00 0.00 3.16
340 341 1.269723 GCCACCCTACAAAAGAACTGC 59.730 52.381 0.00 0.00 0.00 4.40
341 342 1.886542 CCACCCTACAAAAGAACTGCC 59.113 52.381 0.00 0.00 0.00 4.85
342 343 2.582052 CACCCTACAAAAGAACTGCCA 58.418 47.619 0.00 0.00 0.00 4.92
343 344 2.955660 CACCCTACAAAAGAACTGCCAA 59.044 45.455 0.00 0.00 0.00 4.52
344 345 3.383185 CACCCTACAAAAGAACTGCCAAA 59.617 43.478 0.00 0.00 0.00 3.28
345 346 4.027437 ACCCTACAAAAGAACTGCCAAAA 58.973 39.130 0.00 0.00 0.00 2.44
346 347 4.653801 ACCCTACAAAAGAACTGCCAAAAT 59.346 37.500 0.00 0.00 0.00 1.82
347 348 4.990426 CCCTACAAAAGAACTGCCAAAATG 59.010 41.667 0.00 0.00 0.00 2.32
348 349 5.221422 CCCTACAAAAGAACTGCCAAAATGA 60.221 40.000 0.00 0.00 0.00 2.57
349 350 5.922544 CCTACAAAAGAACTGCCAAAATGAG 59.077 40.000 0.00 0.00 0.00 2.90
350 351 4.122046 ACAAAAGAACTGCCAAAATGAGC 58.878 39.130 0.00 0.00 0.00 4.26
351 352 4.121317 CAAAAGAACTGCCAAAATGAGCA 58.879 39.130 0.00 0.00 37.46 4.26
352 353 4.405116 AAAGAACTGCCAAAATGAGCAA 57.595 36.364 0.00 0.00 38.82 3.91
353 354 3.375782 AGAACTGCCAAAATGAGCAAC 57.624 42.857 0.00 0.00 38.82 4.17
354 355 2.036346 AGAACTGCCAAAATGAGCAACC 59.964 45.455 0.00 0.00 38.82 3.77
355 356 1.412079 ACTGCCAAAATGAGCAACCA 58.588 45.000 0.00 0.00 38.82 3.67
356 357 1.069049 ACTGCCAAAATGAGCAACCAC 59.931 47.619 0.00 0.00 38.82 4.16
357 358 0.031857 TGCCAAAATGAGCAACCACG 59.968 50.000 0.00 0.00 35.69 4.94
358 359 0.031994 GCCAAAATGAGCAACCACGT 59.968 50.000 0.00 0.00 0.00 4.49
359 360 1.537990 GCCAAAATGAGCAACCACGTT 60.538 47.619 0.00 0.00 0.00 3.99
360 361 2.287909 GCCAAAATGAGCAACCACGTTA 60.288 45.455 0.00 0.00 0.00 3.18
361 362 3.613910 GCCAAAATGAGCAACCACGTTAT 60.614 43.478 0.00 0.00 0.00 1.89
362 363 4.165779 CCAAAATGAGCAACCACGTTATC 58.834 43.478 0.00 0.00 0.00 1.75
363 364 4.082787 CCAAAATGAGCAACCACGTTATCT 60.083 41.667 0.00 0.00 0.00 1.98
364 365 5.460646 CAAAATGAGCAACCACGTTATCTT 58.539 37.500 0.00 0.00 0.00 2.40
365 366 5.705609 AAATGAGCAACCACGTTATCTTT 57.294 34.783 0.00 0.00 0.00 2.52
366 367 4.946784 ATGAGCAACCACGTTATCTTTC 57.053 40.909 0.00 0.00 0.00 2.62
367 368 3.071479 TGAGCAACCACGTTATCTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
368 369 3.071479 GAGCAACCACGTTATCTTTCCA 58.929 45.455 0.00 0.00 0.00 3.53
369 370 3.686016 AGCAACCACGTTATCTTTCCAT 58.314 40.909 0.00 0.00 0.00 3.41
370 371 4.839121 AGCAACCACGTTATCTTTCCATA 58.161 39.130 0.00 0.00 0.00 2.74
371 372 5.437060 AGCAACCACGTTATCTTTCCATAT 58.563 37.500 0.00 0.00 0.00 1.78
372 373 6.588204 AGCAACCACGTTATCTTTCCATATA 58.412 36.000 0.00 0.00 0.00 0.86
373 374 7.224297 AGCAACCACGTTATCTTTCCATATAT 58.776 34.615 0.00 0.00 0.00 0.86
374 375 8.372459 AGCAACCACGTTATCTTTCCATATATA 58.628 33.333 0.00 0.00 0.00 0.86
375 376 9.162764 GCAACCACGTTATCTTTCCATATATAT 57.837 33.333 0.00 0.00 0.00 0.86
411 412 3.567797 GTCATCGCTTCTGCCCGC 61.568 66.667 0.00 0.00 35.36 6.13
412 413 4.838152 TCATCGCTTCTGCCCGCC 62.838 66.667 0.00 0.00 35.36 6.13
438 439 2.472934 GTCGCGGCCGTTTTACAG 59.527 61.111 28.70 9.62 35.54 2.74
439 440 2.023223 GTCGCGGCCGTTTTACAGA 61.023 57.895 28.70 11.80 35.54 3.41
440 441 1.300775 TCGCGGCCGTTTTACAGAA 60.301 52.632 28.70 0.00 35.54 3.02
446 447 2.546789 CGGCCGTTTTACAGAAAAGTCT 59.453 45.455 19.50 0.00 35.21 3.24
452 453 7.332678 GGCCGTTTTACAGAAAAGTCTCTATAA 59.667 37.037 0.00 0.00 35.21 0.98
453 454 8.880750 GCCGTTTTACAGAAAAGTCTCTATAAT 58.119 33.333 0.00 0.00 35.21 1.28
477 478 7.954788 TTTTTAATAATTGAAGCCGCAGTTT 57.045 28.000 0.00 0.00 0.00 2.66
483 484 2.490328 TGAAGCCGCAGTTTCTTTTG 57.510 45.000 0.00 0.00 34.54 2.44
492 493 4.279659 CGCAGTTTCTTTTGTAGTGGTTC 58.720 43.478 0.00 0.00 0.00 3.62
494 495 5.511571 GCAGTTTCTTTTGTAGTGGTTCTC 58.488 41.667 0.00 0.00 0.00 2.87
513 514 6.915843 GGTTCTCAGAAAACGCTTCATTTTTA 59.084 34.615 0.00 0.00 29.44 1.52
545 546 9.816787 AACTCCTCTATTAAACCAAAATAACCA 57.183 29.630 0.00 0.00 0.00 3.67
546 547 9.816787 ACTCCTCTATTAAACCAAAATAACCAA 57.183 29.630 0.00 0.00 0.00 3.67
549 550 9.647797 CCTCTATTAAACCAAAATAACCAAACC 57.352 33.333 0.00 0.00 0.00 3.27
566 567 2.043450 CAGTCCTCCGCCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
573 574 3.535962 CCGCCTCCTCTCCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
574 575 3.535962 CGCCTCCTCTCCTGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
594 595 4.473520 CCATCGCCCGCAGAACCT 62.474 66.667 0.00 0.00 0.00 3.50
597 598 3.665675 ATCGCCCGCAGAACCTCAC 62.666 63.158 0.00 0.00 0.00 3.51
600 601 3.636231 CCCGCAGAACCTCACCCA 61.636 66.667 0.00 0.00 0.00 4.51
690 691 4.162690 AGATCCAAGGCGGCCGAC 62.163 66.667 33.48 30.81 33.14 4.79
732 733 3.515286 CTAGAAGCCCGCGTCCGA 61.515 66.667 4.92 0.00 36.29 4.55
742 743 2.430921 GCGTCCGATGGCGATAGG 60.431 66.667 1.22 1.22 40.82 2.57
745 746 1.080434 GTCCGATGGCGATAGGAGC 60.080 63.158 10.78 3.33 40.82 4.70
857 858 2.743928 CGCAGGACAAGGTGAGCC 60.744 66.667 0.00 0.00 0.00 4.70
858 859 2.743928 GCAGGACAAGGTGAGCCG 60.744 66.667 0.00 0.00 40.50 5.52
878 879 4.615815 GGGCCGCGAGATCTGCAT 62.616 66.667 8.23 0.00 0.00 3.96
884 885 1.804396 CGCGAGATCTGCATCCTCCT 61.804 60.000 0.00 0.00 0.00 3.69
894 895 1.074623 CATCCTCCTGCCTCCCTCT 60.075 63.158 0.00 0.00 0.00 3.69
919 920 3.747099 ATTCGGCTCACTTTGATTTCG 57.253 42.857 0.00 0.00 0.00 3.46
934 935 4.836455 TGATTTCGATTTATTGCTGCTCG 58.164 39.130 0.00 0.36 0.00 5.03
946 947 1.853319 CTGCTCGTTGACGTGTTCC 59.147 57.895 0.00 0.00 40.80 3.62
947 948 0.597637 CTGCTCGTTGACGTGTTCCT 60.598 55.000 0.00 0.00 40.80 3.36
949 950 1.282930 GCTCGTTGACGTGTTCCTCC 61.283 60.000 0.00 0.00 40.80 4.30
951 952 0.313043 TCGTTGACGTGTTCCTCCTC 59.687 55.000 0.00 0.00 40.80 3.71
961 962 3.642741 TTCCTCCTCCCCCTCTGCC 62.643 68.421 0.00 0.00 0.00 4.85
1089 1091 6.317893 GGGTACATTCCGAATCAACTACAAAT 59.682 38.462 0.00 0.00 0.00 2.32
1093 1095 6.659242 ACATTCCGAATCAACTACAAATTCCT 59.341 34.615 0.00 0.00 0.00 3.36
1141 1143 2.656646 CTGCCTCGCTACACCACA 59.343 61.111 0.00 0.00 0.00 4.17
1142 1144 1.446792 CTGCCTCGCTACACCACAG 60.447 63.158 0.00 0.00 0.00 3.66
1143 1145 1.877576 CTGCCTCGCTACACCACAGA 61.878 60.000 0.00 0.00 0.00 3.41
1209 1211 2.613691 CAATTGTTGGCCTCATTGAGC 58.386 47.619 3.32 4.12 0.00 4.26
1539 1542 1.549243 TTCCGCCTGCTGATGTGGTA 61.549 55.000 0.00 0.00 33.79 3.25
1640 1764 1.154197 GAAGGAAAGTACGGCCACAC 58.846 55.000 2.24 0.00 0.00 3.82
1674 1817 3.401182 GGAGCAAGAGATGATCACCATC 58.599 50.000 0.00 0.00 46.39 3.51
1710 1853 6.530601 AAGGCCTAGGGAATTATAACATGT 57.469 37.500 5.16 0.00 0.00 3.21
1899 2053 0.622136 ATTCTGTGCATCCAGGCTGA 59.378 50.000 17.94 2.24 33.14 4.26
1976 2131 7.183433 GTGTTTTCTGTTTTTGTTGTTGTTGT 58.817 30.769 0.00 0.00 0.00 3.32
2015 3039 2.474410 AGCTTACAGTACCAGGCAAC 57.526 50.000 0.00 0.00 0.00 4.17
2076 3100 2.102553 GACTCCTACGTCGCTGGC 59.897 66.667 0.00 0.00 0.00 4.85
2094 3118 1.661509 CGCTTGTCACTGTCGCTGA 60.662 57.895 0.00 0.00 0.00 4.26
2231 3260 2.159226 CGGTCTTGGTAGTGGAGATGTC 60.159 54.545 0.00 0.00 0.00 3.06
2242 3271 2.668457 GTGGAGATGTCGACATTGTCAC 59.332 50.000 30.46 28.32 36.57 3.67
2281 3310 1.516603 GACTCGAGCAACTACGCCC 60.517 63.158 13.61 0.00 0.00 6.13
2288 3317 2.358247 CAACTACGCCCGCTGGTT 60.358 61.111 0.00 0.00 0.00 3.67
2294 3323 4.077184 CGCCCGCTGGTTGAGGTA 62.077 66.667 0.00 0.00 33.47 3.08
2811 3882 2.100916 TGATAGGCCGTAGCTTCACTTC 59.899 50.000 0.00 0.00 39.73 3.01
3006 4082 2.584791 GCAGTTTTGCCGTGTGAATAG 58.415 47.619 0.00 0.00 44.74 1.73
3049 4125 2.672478 GCTCACATGCGAGTCTACTTGT 60.672 50.000 12.17 0.00 35.33 3.16
3101 4178 2.472695 TGAACGCAAAGCCATCTAGT 57.527 45.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.092687 GTGTACAACTACTAGATTTCTTTCCCA 58.907 37.037 0.00 0.00 0.00 4.37
1 2 8.092687 TGTGTACAACTACTAGATTTCTTTCCC 58.907 37.037 0.00 0.00 0.00 3.97
2 3 8.923683 GTGTGTACAACTACTAGATTTCTTTCC 58.076 37.037 0.00 0.00 0.00 3.13
3 4 9.472361 TGTGTGTACAACTACTAGATTTCTTTC 57.528 33.333 0.00 0.00 32.88 2.62
4 5 9.826574 TTGTGTGTACAACTACTAGATTTCTTT 57.173 29.630 0.00 0.00 41.66 2.52
20 21 5.237815 GGTCTGATTGAGATTGTGTGTACA 58.762 41.667 0.00 0.00 31.63 2.90
21 22 4.327357 CGGTCTGATTGAGATTGTGTGTAC 59.673 45.833 0.00 0.00 31.63 2.90
22 23 4.021456 ACGGTCTGATTGAGATTGTGTGTA 60.021 41.667 0.00 0.00 31.63 2.90
23 24 3.244215 ACGGTCTGATTGAGATTGTGTGT 60.244 43.478 0.00 0.00 31.63 3.72
24 25 3.329386 ACGGTCTGATTGAGATTGTGTG 58.671 45.455 0.00 0.00 31.63 3.82
25 26 3.685139 ACGGTCTGATTGAGATTGTGT 57.315 42.857 0.00 0.00 31.63 3.72
26 27 5.595885 AGATACGGTCTGATTGAGATTGTG 58.404 41.667 0.00 0.00 35.31 3.33
27 28 5.860941 AGATACGGTCTGATTGAGATTGT 57.139 39.130 0.00 0.00 35.31 2.71
28 29 7.493971 AGAAAAGATACGGTCTGATTGAGATTG 59.506 37.037 0.00 0.00 37.23 2.67
29 30 7.560368 AGAAAAGATACGGTCTGATTGAGATT 58.440 34.615 0.00 0.00 37.23 2.40
30 31 7.118496 AGAAAAGATACGGTCTGATTGAGAT 57.882 36.000 0.00 0.00 37.23 2.75
31 32 6.531503 AGAAAAGATACGGTCTGATTGAGA 57.468 37.500 0.00 0.00 37.23 3.27
32 33 5.457148 CGAGAAAAGATACGGTCTGATTGAG 59.543 44.000 0.00 0.00 37.23 3.02
33 34 5.340803 CGAGAAAAGATACGGTCTGATTGA 58.659 41.667 0.00 0.00 37.23 2.57
34 35 4.026475 GCGAGAAAAGATACGGTCTGATTG 60.026 45.833 0.00 0.00 37.23 2.67
35 36 4.113354 GCGAGAAAAGATACGGTCTGATT 58.887 43.478 0.00 0.00 37.23 2.57
36 37 3.381908 AGCGAGAAAAGATACGGTCTGAT 59.618 43.478 0.00 0.00 37.23 2.90
37 38 2.753452 AGCGAGAAAAGATACGGTCTGA 59.247 45.455 0.00 0.00 37.23 3.27
38 39 3.152261 AGCGAGAAAAGATACGGTCTG 57.848 47.619 0.00 0.00 37.23 3.51
39 40 3.870633 AAGCGAGAAAAGATACGGTCT 57.129 42.857 0.00 0.00 39.43 3.85
40 41 4.923264 AAAAGCGAGAAAAGATACGGTC 57.077 40.909 0.00 0.00 35.53 4.79
41 42 4.628766 GGTAAAAGCGAGAAAAGATACGGT 59.371 41.667 0.00 0.00 38.06 4.83
42 43 4.868734 AGGTAAAAGCGAGAAAAGATACGG 59.131 41.667 0.00 0.00 0.00 4.02
43 44 7.306632 CCATAGGTAAAAGCGAGAAAAGATACG 60.307 40.741 0.00 0.00 0.00 3.06
44 45 7.709613 TCCATAGGTAAAAGCGAGAAAAGATAC 59.290 37.037 0.00 0.00 0.00 2.24
45 46 7.788026 TCCATAGGTAAAAGCGAGAAAAGATA 58.212 34.615 0.00 0.00 0.00 1.98
46 47 6.650120 TCCATAGGTAAAAGCGAGAAAAGAT 58.350 36.000 0.00 0.00 0.00 2.40
47 48 6.045072 TCCATAGGTAAAAGCGAGAAAAGA 57.955 37.500 0.00 0.00 0.00 2.52
48 49 6.927294 ATCCATAGGTAAAAGCGAGAAAAG 57.073 37.500 0.00 0.00 0.00 2.27
49 50 6.317893 GGAATCCATAGGTAAAAGCGAGAAAA 59.682 38.462 0.00 0.00 0.00 2.29
50 51 5.820947 GGAATCCATAGGTAAAAGCGAGAAA 59.179 40.000 0.00 0.00 0.00 2.52
51 52 5.104693 TGGAATCCATAGGTAAAAGCGAGAA 60.105 40.000 0.00 0.00 0.00 2.87
52 53 4.407621 TGGAATCCATAGGTAAAAGCGAGA 59.592 41.667 0.00 0.00 0.00 4.04
53 54 4.703897 TGGAATCCATAGGTAAAAGCGAG 58.296 43.478 0.00 0.00 0.00 5.03
54 55 4.764050 TGGAATCCATAGGTAAAAGCGA 57.236 40.909 0.00 0.00 0.00 4.93
55 56 6.391227 AAATGGAATCCATAGGTAAAAGCG 57.609 37.500 16.10 0.00 44.40 4.68
56 57 6.323739 TGGAAATGGAATCCATAGGTAAAAGC 59.676 38.462 16.10 0.00 44.40 3.51
57 58 7.896383 TGGAAATGGAATCCATAGGTAAAAG 57.104 36.000 16.10 0.00 44.40 2.27
68 69 9.690913 TTGAGATATATCATGGAAATGGAATCC 57.309 33.333 15.08 0.00 37.48 3.01
73 74 9.901172 TGAGATTGAGATATATCATGGAAATGG 57.099 33.333 15.08 0.00 0.00 3.16
76 77 9.730705 GGTTGAGATTGAGATATATCATGGAAA 57.269 33.333 15.08 2.52 0.00 3.13
77 78 8.324306 GGGTTGAGATTGAGATATATCATGGAA 58.676 37.037 15.08 2.52 0.00 3.53
78 79 7.458806 TGGGTTGAGATTGAGATATATCATGGA 59.541 37.037 15.08 0.00 0.00 3.41
79 80 7.627311 TGGGTTGAGATTGAGATATATCATGG 58.373 38.462 15.08 0.00 0.00 3.66
80 81 9.682465 ATTGGGTTGAGATTGAGATATATCATG 57.318 33.333 15.08 0.00 0.00 3.07
81 82 9.902684 GATTGGGTTGAGATTGAGATATATCAT 57.097 33.333 15.08 0.00 0.00 2.45
82 83 8.883302 TGATTGGGTTGAGATTGAGATATATCA 58.117 33.333 15.08 0.00 0.00 2.15
83 84 9.730705 TTGATTGGGTTGAGATTGAGATATATC 57.269 33.333 4.42 4.42 0.00 1.63
85 86 9.565090 CTTTGATTGGGTTGAGATTGAGATATA 57.435 33.333 0.00 0.00 0.00 0.86
86 87 8.057623 ACTTTGATTGGGTTGAGATTGAGATAT 58.942 33.333 0.00 0.00 0.00 1.63
87 88 7.405292 ACTTTGATTGGGTTGAGATTGAGATA 58.595 34.615 0.00 0.00 0.00 1.98
88 89 6.251471 ACTTTGATTGGGTTGAGATTGAGAT 58.749 36.000 0.00 0.00 0.00 2.75
89 90 5.634118 ACTTTGATTGGGTTGAGATTGAGA 58.366 37.500 0.00 0.00 0.00 3.27
90 91 5.972107 ACTTTGATTGGGTTGAGATTGAG 57.028 39.130 0.00 0.00 0.00 3.02
91 92 6.729690 AAACTTTGATTGGGTTGAGATTGA 57.270 33.333 0.00 0.00 0.00 2.57
92 93 7.041848 GGAAAAACTTTGATTGGGTTGAGATTG 60.042 37.037 0.00 0.00 0.00 2.67
93 94 6.992123 GGAAAAACTTTGATTGGGTTGAGATT 59.008 34.615 0.00 0.00 0.00 2.40
94 95 6.327365 AGGAAAAACTTTGATTGGGTTGAGAT 59.673 34.615 0.00 0.00 0.00 2.75
95 96 5.660864 AGGAAAAACTTTGATTGGGTTGAGA 59.339 36.000 0.00 0.00 0.00 3.27
96 97 5.917462 AGGAAAAACTTTGATTGGGTTGAG 58.083 37.500 0.00 0.00 0.00 3.02
97 98 5.948742 AGGAAAAACTTTGATTGGGTTGA 57.051 34.783 0.00 0.00 0.00 3.18
98 99 5.689961 CGTAGGAAAAACTTTGATTGGGTTG 59.310 40.000 0.00 0.00 0.00 3.77
99 100 5.361571 ACGTAGGAAAAACTTTGATTGGGTT 59.638 36.000 0.00 0.00 0.00 4.11
100 101 4.891168 ACGTAGGAAAAACTTTGATTGGGT 59.109 37.500 0.00 0.00 0.00 4.51
101 102 5.447624 ACGTAGGAAAAACTTTGATTGGG 57.552 39.130 0.00 0.00 0.00 4.12
102 103 6.500041 TCAACGTAGGAAAAACTTTGATTGG 58.500 36.000 0.00 0.00 32.22 3.16
103 104 7.043656 GGTTCAACGTAGGAAAAACTTTGATTG 60.044 37.037 4.36 0.00 35.73 2.67
104 105 6.976349 GGTTCAACGTAGGAAAAACTTTGATT 59.024 34.615 4.36 0.00 35.73 2.57
105 106 6.095720 TGGTTCAACGTAGGAAAAACTTTGAT 59.904 34.615 4.36 0.00 35.73 2.57
106 107 5.415077 TGGTTCAACGTAGGAAAAACTTTGA 59.585 36.000 4.36 0.00 34.47 2.69
107 108 5.642686 TGGTTCAACGTAGGAAAAACTTTG 58.357 37.500 4.36 0.00 0.00 2.77
108 109 5.900865 TGGTTCAACGTAGGAAAAACTTT 57.099 34.783 4.36 0.00 0.00 2.66
109 110 5.900865 TTGGTTCAACGTAGGAAAAACTT 57.099 34.783 4.36 0.00 0.00 2.66
110 111 5.900865 TTTGGTTCAACGTAGGAAAAACT 57.099 34.783 4.36 0.00 0.00 2.66
111 112 6.324042 TCTTTTGGTTCAACGTAGGAAAAAC 58.676 36.000 4.36 0.59 0.00 2.43
112 113 6.512342 TCTTTTGGTTCAACGTAGGAAAAA 57.488 33.333 4.36 1.25 0.00 1.94
113 114 6.512342 TTCTTTTGGTTCAACGTAGGAAAA 57.488 33.333 4.36 0.00 0.00 2.29
114 115 6.702716 ATTCTTTTGGTTCAACGTAGGAAA 57.297 33.333 4.36 0.00 0.00 3.13
115 116 7.804843 TTATTCTTTTGGTTCAACGTAGGAA 57.195 32.000 0.00 0.00 0.00 3.36
116 117 7.499895 AGTTTATTCTTTTGGTTCAACGTAGGA 59.500 33.333 0.00 0.00 0.00 2.94
117 118 7.645402 AGTTTATTCTTTTGGTTCAACGTAGG 58.355 34.615 0.00 0.00 0.00 3.18
118 119 9.511144 AAAGTTTATTCTTTTGGTTCAACGTAG 57.489 29.630 0.00 0.00 34.50 3.51
119 120 9.505995 GAAAGTTTATTCTTTTGGTTCAACGTA 57.494 29.630 0.00 0.00 37.70 3.57
120 121 7.490079 GGAAAGTTTATTCTTTTGGTTCAACGT 59.510 33.333 0.00 0.00 37.70 3.99
121 122 7.489757 TGGAAAGTTTATTCTTTTGGTTCAACG 59.510 33.333 0.00 0.00 37.70 4.10
122 123 8.600625 GTGGAAAGTTTATTCTTTTGGTTCAAC 58.399 33.333 0.00 0.00 37.70 3.18
123 124 7.766738 GGTGGAAAGTTTATTCTTTTGGTTCAA 59.233 33.333 0.00 0.00 37.70 2.69
124 125 7.125053 AGGTGGAAAGTTTATTCTTTTGGTTCA 59.875 33.333 0.00 0.00 37.70 3.18
125 126 7.497595 AGGTGGAAAGTTTATTCTTTTGGTTC 58.502 34.615 0.00 0.00 37.70 3.62
126 127 7.432148 AGGTGGAAAGTTTATTCTTTTGGTT 57.568 32.000 0.00 0.00 37.70 3.67
127 128 7.432148 AAGGTGGAAAGTTTATTCTTTTGGT 57.568 32.000 0.00 0.00 37.70 3.67
128 129 6.640907 CGAAGGTGGAAAGTTTATTCTTTTGG 59.359 38.462 0.00 0.00 37.70 3.28
129 130 6.143919 GCGAAGGTGGAAAGTTTATTCTTTTG 59.856 38.462 0.00 0.00 37.70 2.44
130 131 6.213677 GCGAAGGTGGAAAGTTTATTCTTTT 58.786 36.000 0.00 0.00 37.70 2.27
131 132 5.562113 CGCGAAGGTGGAAAGTTTATTCTTT 60.562 40.000 0.00 0.00 39.87 2.52
132 133 4.083484 CGCGAAGGTGGAAAGTTTATTCTT 60.083 41.667 0.00 0.00 0.00 2.52
133 134 3.435671 CGCGAAGGTGGAAAGTTTATTCT 59.564 43.478 0.00 0.00 0.00 2.40
134 135 3.434299 TCGCGAAGGTGGAAAGTTTATTC 59.566 43.478 6.20 0.00 0.00 1.75
135 136 3.187842 GTCGCGAAGGTGGAAAGTTTATT 59.812 43.478 12.06 0.00 0.00 1.40
136 137 2.740447 GTCGCGAAGGTGGAAAGTTTAT 59.260 45.455 12.06 0.00 0.00 1.40
137 138 2.137523 GTCGCGAAGGTGGAAAGTTTA 58.862 47.619 12.06 0.00 0.00 2.01
138 139 0.942252 GTCGCGAAGGTGGAAAGTTT 59.058 50.000 12.06 0.00 0.00 2.66
139 140 0.179067 TGTCGCGAAGGTGGAAAGTT 60.179 50.000 12.06 0.00 0.00 2.66
140 141 0.878961 GTGTCGCGAAGGTGGAAAGT 60.879 55.000 12.06 0.00 0.00 2.66
141 142 0.878523 TGTGTCGCGAAGGTGGAAAG 60.879 55.000 12.06 0.00 0.00 2.62
142 143 1.144276 TGTGTCGCGAAGGTGGAAA 59.856 52.632 12.06 0.00 0.00 3.13
143 144 1.593209 GTGTGTCGCGAAGGTGGAA 60.593 57.895 12.06 0.00 0.00 3.53
144 145 2.028484 GTGTGTCGCGAAGGTGGA 59.972 61.111 12.06 0.00 0.00 4.02
145 146 3.403057 CGTGTGTCGCGAAGGTGG 61.403 66.667 12.06 0.00 39.94 4.61
146 147 3.403057 CCGTGTGTCGCGAAGGTG 61.403 66.667 12.06 0.00 39.94 4.00
147 148 1.588824 TATCCGTGTGTCGCGAAGGT 61.589 55.000 12.06 3.73 39.94 3.50
148 149 0.248907 ATATCCGTGTGTCGCGAAGG 60.249 55.000 12.06 9.94 39.94 3.46
149 150 1.556564 AATATCCGTGTGTCGCGAAG 58.443 50.000 12.06 0.00 39.94 3.79
150 151 2.847959 TAATATCCGTGTGTCGCGAA 57.152 45.000 12.06 0.00 39.94 4.70
151 152 2.723209 CTTAATATCCGTGTGTCGCGA 58.277 47.619 3.71 3.71 39.94 5.87
152 153 1.189446 GCTTAATATCCGTGTGTCGCG 59.811 52.381 0.00 0.00 38.35 5.87
153 154 2.470821 AGCTTAATATCCGTGTGTCGC 58.529 47.619 0.00 0.00 38.35 5.19
154 155 4.856664 ACTAGCTTAATATCCGTGTGTCG 58.143 43.478 0.00 0.00 39.52 4.35
155 156 8.133627 TCTTTACTAGCTTAATATCCGTGTGTC 58.866 37.037 0.00 0.00 0.00 3.67
156 157 7.919621 GTCTTTACTAGCTTAATATCCGTGTGT 59.080 37.037 0.00 0.00 0.00 3.72
157 158 7.919091 TGTCTTTACTAGCTTAATATCCGTGTG 59.081 37.037 0.00 0.00 0.00 3.82
158 159 7.919621 GTGTCTTTACTAGCTTAATATCCGTGT 59.080 37.037 0.00 0.00 0.00 4.49
159 160 7.381678 GGTGTCTTTACTAGCTTAATATCCGTG 59.618 40.741 0.00 0.00 0.00 4.94
160 161 7.287235 AGGTGTCTTTACTAGCTTAATATCCGT 59.713 37.037 0.00 0.00 0.00 4.69
161 162 7.595502 CAGGTGTCTTTACTAGCTTAATATCCG 59.404 40.741 0.00 0.00 0.00 4.18
162 163 7.385478 GCAGGTGTCTTTACTAGCTTAATATCC 59.615 40.741 0.00 0.00 0.00 2.59
163 164 7.385478 GGCAGGTGTCTTTACTAGCTTAATATC 59.615 40.741 0.00 0.00 0.00 1.63
164 165 7.217906 GGCAGGTGTCTTTACTAGCTTAATAT 58.782 38.462 0.00 0.00 0.00 1.28
165 166 6.579865 GGCAGGTGTCTTTACTAGCTTAATA 58.420 40.000 0.00 0.00 0.00 0.98
166 167 5.429130 GGCAGGTGTCTTTACTAGCTTAAT 58.571 41.667 0.00 0.00 0.00 1.40
167 168 4.619863 CGGCAGGTGTCTTTACTAGCTTAA 60.620 45.833 0.00 0.00 0.00 1.85
168 169 3.119245 CGGCAGGTGTCTTTACTAGCTTA 60.119 47.826 0.00 0.00 0.00 3.09
169 170 2.353803 CGGCAGGTGTCTTTACTAGCTT 60.354 50.000 0.00 0.00 0.00 3.74
170 171 1.204941 CGGCAGGTGTCTTTACTAGCT 59.795 52.381 0.00 0.00 0.00 3.32
171 172 1.641577 CGGCAGGTGTCTTTACTAGC 58.358 55.000 0.00 0.00 0.00 3.42
172 173 1.067142 TGCGGCAGGTGTCTTTACTAG 60.067 52.381 0.00 0.00 0.00 2.57
173 174 0.970640 TGCGGCAGGTGTCTTTACTA 59.029 50.000 0.00 0.00 0.00 1.82
174 175 0.602905 GTGCGGCAGGTGTCTTTACT 60.603 55.000 1.18 0.00 0.00 2.24
175 176 1.574702 GGTGCGGCAGGTGTCTTTAC 61.575 60.000 1.18 0.00 0.00 2.01
176 177 1.302192 GGTGCGGCAGGTGTCTTTA 60.302 57.895 1.18 0.00 0.00 1.85
177 178 2.594592 GGTGCGGCAGGTGTCTTT 60.595 61.111 1.18 0.00 0.00 2.52
178 179 3.872603 TGGTGCGGCAGGTGTCTT 61.873 61.111 1.18 0.00 0.00 3.01
179 180 4.626081 GTGGTGCGGCAGGTGTCT 62.626 66.667 1.18 0.00 0.00 3.41
180 181 4.626081 AGTGGTGCGGCAGGTGTC 62.626 66.667 1.18 0.00 0.00 3.67
181 182 4.626081 GAGTGGTGCGGCAGGTGT 62.626 66.667 1.18 0.00 0.00 4.16
182 183 3.907260 ATGAGTGGTGCGGCAGGTG 62.907 63.158 1.18 0.00 0.00 4.00
183 184 3.612247 GATGAGTGGTGCGGCAGGT 62.612 63.158 1.18 0.00 0.00 4.00
184 185 2.821366 GATGAGTGGTGCGGCAGG 60.821 66.667 1.18 0.00 0.00 4.85
185 186 3.190849 CGATGAGTGGTGCGGCAG 61.191 66.667 1.18 0.00 0.00 4.85
186 187 3.233259 TTCGATGAGTGGTGCGGCA 62.233 57.895 0.00 0.00 0.00 5.69
187 188 2.434185 TTCGATGAGTGGTGCGGC 60.434 61.111 0.00 0.00 0.00 6.53
188 189 2.456119 GCTTCGATGAGTGGTGCGG 61.456 63.158 1.89 0.00 0.00 5.69
189 190 1.086067 ATGCTTCGATGAGTGGTGCG 61.086 55.000 1.89 0.00 0.00 5.34
190 191 1.939974 TATGCTTCGATGAGTGGTGC 58.060 50.000 1.89 0.00 0.00 5.01
191 192 4.813161 AGAATTATGCTTCGATGAGTGGTG 59.187 41.667 1.89 0.00 0.00 4.17
192 193 5.028549 AGAATTATGCTTCGATGAGTGGT 57.971 39.130 1.89 0.00 0.00 4.16
193 194 5.525012 TCAAGAATTATGCTTCGATGAGTGG 59.475 40.000 1.89 0.00 0.00 4.00
194 195 6.036408 TGTCAAGAATTATGCTTCGATGAGTG 59.964 38.462 1.89 0.00 31.24 3.51
195 196 6.108687 TGTCAAGAATTATGCTTCGATGAGT 58.891 36.000 1.89 0.00 31.24 3.41
196 197 6.594284 TGTCAAGAATTATGCTTCGATGAG 57.406 37.500 1.89 0.00 31.24 2.90
197 198 7.558161 AATGTCAAGAATTATGCTTCGATGA 57.442 32.000 1.89 0.00 0.00 2.92
198 199 9.720667 TTAAATGTCAAGAATTATGCTTCGATG 57.279 29.630 0.00 0.00 0.00 3.84
199 200 9.941664 CTTAAATGTCAAGAATTATGCTTCGAT 57.058 29.630 0.00 0.00 0.00 3.59
200 201 8.946085 ACTTAAATGTCAAGAATTATGCTTCGA 58.054 29.630 0.00 0.00 0.00 3.71
201 202 9.559958 AACTTAAATGTCAAGAATTATGCTTCG 57.440 29.630 0.00 0.00 0.00 3.79
209 210 9.899226 GCAAGTAGAACTTAAATGTCAAGAATT 57.101 29.630 0.00 0.00 36.03 2.17
210 211 9.289782 AGCAAGTAGAACTTAAATGTCAAGAAT 57.710 29.630 0.00 0.00 36.03 2.40
211 212 8.559536 CAGCAAGTAGAACTTAAATGTCAAGAA 58.440 33.333 0.00 0.00 36.03 2.52
212 213 7.307989 GCAGCAAGTAGAACTTAAATGTCAAGA 60.308 37.037 0.00 0.00 36.03 3.02
213 214 6.798959 GCAGCAAGTAGAACTTAAATGTCAAG 59.201 38.462 0.00 0.00 36.03 3.02
214 215 6.293955 GGCAGCAAGTAGAACTTAAATGTCAA 60.294 38.462 0.00 0.00 36.03 3.18
215 216 5.181245 GGCAGCAAGTAGAACTTAAATGTCA 59.819 40.000 0.00 0.00 36.03 3.58
216 217 5.181245 TGGCAGCAAGTAGAACTTAAATGTC 59.819 40.000 0.00 0.00 36.03 3.06
217 218 5.070001 TGGCAGCAAGTAGAACTTAAATGT 58.930 37.500 0.00 0.00 36.03 2.71
218 219 5.627499 TGGCAGCAAGTAGAACTTAAATG 57.373 39.130 0.00 0.00 36.03 2.32
219 220 6.840780 AATGGCAGCAAGTAGAACTTAAAT 57.159 33.333 0.00 0.00 36.03 1.40
220 221 6.648879 AAATGGCAGCAAGTAGAACTTAAA 57.351 33.333 0.00 0.00 36.03 1.52
221 222 6.446318 CAAAATGGCAGCAAGTAGAACTTAA 58.554 36.000 0.00 0.00 36.03 1.85
222 223 5.564651 GCAAAATGGCAGCAAGTAGAACTTA 60.565 40.000 0.00 0.00 36.03 2.24
223 224 4.797275 GCAAAATGGCAGCAAGTAGAACTT 60.797 41.667 0.00 0.00 39.39 2.66
224 225 3.305608 GCAAAATGGCAGCAAGTAGAACT 60.306 43.478 0.00 0.00 0.00 3.01
225 226 2.989166 GCAAAATGGCAGCAAGTAGAAC 59.011 45.455 0.00 0.00 0.00 3.01
226 227 2.627221 TGCAAAATGGCAGCAAGTAGAA 59.373 40.909 0.00 0.00 39.25 2.10
227 228 2.237643 TGCAAAATGGCAGCAAGTAGA 58.762 42.857 0.00 0.00 39.25 2.59
228 229 2.728690 TGCAAAATGGCAGCAAGTAG 57.271 45.000 0.00 0.00 39.25 2.57
232 233 2.616634 TTCTTGCAAAATGGCAGCAA 57.383 40.000 10.85 10.85 45.88 3.91
233 234 2.616634 TTTCTTGCAAAATGGCAGCA 57.383 40.000 0.00 0.00 45.88 4.41
234 235 3.465122 CATTTCTTGCAAAATGGCAGC 57.535 42.857 13.75 0.00 45.88 5.25
239 240 2.745281 CTGCCCCATTTCTTGCAAAATG 59.255 45.455 14.38 14.38 43.28 2.32
240 241 2.372837 ACTGCCCCATTTCTTGCAAAAT 59.627 40.909 0.00 0.00 32.58 1.82
241 242 1.767681 ACTGCCCCATTTCTTGCAAAA 59.232 42.857 0.00 0.00 32.58 2.44
242 243 1.422531 ACTGCCCCATTTCTTGCAAA 58.577 45.000 0.00 0.00 32.58 3.68
243 244 1.422531 AACTGCCCCATTTCTTGCAA 58.577 45.000 0.00 0.00 32.58 4.08
244 245 2.300956 TAACTGCCCCATTTCTTGCA 57.699 45.000 0.00 0.00 0.00 4.08
245 246 3.676291 TTTAACTGCCCCATTTCTTGC 57.324 42.857 0.00 0.00 0.00 4.01
246 247 6.935167 AGTAATTTAACTGCCCCATTTCTTG 58.065 36.000 0.00 0.00 0.00 3.02
247 248 6.723977 TGAGTAATTTAACTGCCCCATTTCTT 59.276 34.615 0.00 0.00 0.00 2.52
248 249 6.252995 TGAGTAATTTAACTGCCCCATTTCT 58.747 36.000 0.00 0.00 0.00 2.52
249 250 6.524101 TGAGTAATTTAACTGCCCCATTTC 57.476 37.500 0.00 0.00 0.00 2.17
250 251 6.926630 TTGAGTAATTTAACTGCCCCATTT 57.073 33.333 0.00 0.00 0.00 2.32
251 252 8.641541 CATATTGAGTAATTTAACTGCCCCATT 58.358 33.333 0.00 0.00 0.00 3.16
252 253 7.233348 CCATATTGAGTAATTTAACTGCCCCAT 59.767 37.037 0.00 0.00 0.00 4.00
253 254 6.549364 CCATATTGAGTAATTTAACTGCCCCA 59.451 38.462 0.00 0.00 0.00 4.96
254 255 6.549736 ACCATATTGAGTAATTTAACTGCCCC 59.450 38.462 0.00 0.00 0.00 5.80
255 256 7.582667 ACCATATTGAGTAATTTAACTGCCC 57.417 36.000 0.00 0.00 0.00 5.36
256 257 9.116067 TGTACCATATTGAGTAATTTAACTGCC 57.884 33.333 0.00 0.00 0.00 4.85
260 261 9.594038 CGCATGTACCATATTGAGTAATTTAAC 57.406 33.333 0.00 0.00 0.00 2.01
261 262 9.549078 TCGCATGTACCATATTGAGTAATTTAA 57.451 29.630 0.00 0.00 0.00 1.52
262 263 9.719355 ATCGCATGTACCATATTGAGTAATTTA 57.281 29.630 0.00 0.00 0.00 1.40
263 264 8.506437 CATCGCATGTACCATATTGAGTAATTT 58.494 33.333 0.00 0.00 0.00 1.82
264 265 7.877612 TCATCGCATGTACCATATTGAGTAATT 59.122 33.333 0.00 0.00 0.00 1.40
265 266 7.331934 GTCATCGCATGTACCATATTGAGTAAT 59.668 37.037 0.00 0.00 0.00 1.89
266 267 6.645003 GTCATCGCATGTACCATATTGAGTAA 59.355 38.462 0.00 0.00 0.00 2.24
267 268 6.156519 GTCATCGCATGTACCATATTGAGTA 58.843 40.000 0.00 0.00 0.00 2.59
268 269 4.991056 GTCATCGCATGTACCATATTGAGT 59.009 41.667 0.00 0.00 0.00 3.41
269 270 4.389992 GGTCATCGCATGTACCATATTGAG 59.610 45.833 0.00 0.00 33.49 3.02
270 271 4.314961 GGTCATCGCATGTACCATATTGA 58.685 43.478 0.00 0.00 33.49 2.57
271 272 3.123453 CGGTCATCGCATGTACCATATTG 59.877 47.826 0.00 0.00 33.11 1.90
272 273 3.006430 TCGGTCATCGCATGTACCATATT 59.994 43.478 0.00 0.00 39.05 1.28
273 274 2.560981 TCGGTCATCGCATGTACCATAT 59.439 45.455 0.00 0.00 39.05 1.78
274 275 1.957877 TCGGTCATCGCATGTACCATA 59.042 47.619 0.00 0.00 39.05 2.74
275 276 0.750249 TCGGTCATCGCATGTACCAT 59.250 50.000 0.00 0.00 39.05 3.55
276 277 0.102300 CTCGGTCATCGCATGTACCA 59.898 55.000 0.00 0.00 39.05 3.25
277 278 0.384309 TCTCGGTCATCGCATGTACC 59.616 55.000 0.00 0.00 39.05 3.34
278 279 2.203800 TTCTCGGTCATCGCATGTAC 57.796 50.000 0.00 0.00 39.05 2.90
279 280 3.452755 AATTCTCGGTCATCGCATGTA 57.547 42.857 0.00 0.00 39.05 2.29
280 281 2.315925 AATTCTCGGTCATCGCATGT 57.684 45.000 0.00 0.00 39.05 3.21
281 282 3.680642 AAAATTCTCGGTCATCGCATG 57.319 42.857 0.00 0.00 39.05 4.06
282 283 5.811399 TTAAAAATTCTCGGTCATCGCAT 57.189 34.783 0.00 0.00 39.05 4.73
283 284 5.352846 TCATTAAAAATTCTCGGTCATCGCA 59.647 36.000 0.00 0.00 39.05 5.10
284 285 5.806286 TCATTAAAAATTCTCGGTCATCGC 58.194 37.500 0.00 0.00 39.05 4.58
285 286 7.748683 TGTTTCATTAAAAATTCTCGGTCATCG 59.251 33.333 0.00 0.00 40.90 3.84
286 287 8.850452 GTGTTTCATTAAAAATTCTCGGTCATC 58.150 33.333 0.00 0.00 0.00 2.92
287 288 8.576442 AGTGTTTCATTAAAAATTCTCGGTCAT 58.424 29.630 0.00 0.00 0.00 3.06
288 289 7.860373 CAGTGTTTCATTAAAAATTCTCGGTCA 59.140 33.333 0.00 0.00 0.00 4.02
289 290 7.148967 GCAGTGTTTCATTAAAAATTCTCGGTC 60.149 37.037 0.00 0.00 0.00 4.79
290 291 6.640907 GCAGTGTTTCATTAAAAATTCTCGGT 59.359 34.615 0.00 0.00 0.00 4.69
291 292 6.640499 TGCAGTGTTTCATTAAAAATTCTCGG 59.360 34.615 0.00 0.00 0.00 4.63
292 293 7.621832 TGCAGTGTTTCATTAAAAATTCTCG 57.378 32.000 0.00 0.00 0.00 4.04
293 294 8.981647 ACATGCAGTGTTTCATTAAAAATTCTC 58.018 29.630 0.00 0.00 38.01 2.87
294 295 8.767085 CACATGCAGTGTTTCATTAAAAATTCT 58.233 29.630 7.80 0.00 43.40 2.40
295 296 8.922738 CACATGCAGTGTTTCATTAAAAATTC 57.077 30.769 7.80 0.00 43.40 2.17
311 312 1.002134 GTAGGGTGGCACATGCAGT 60.002 57.895 20.82 0.00 44.52 4.40
312 313 0.608856 TTGTAGGGTGGCACATGCAG 60.609 55.000 20.82 0.00 44.52 4.41
313 314 0.178978 TTTGTAGGGTGGCACATGCA 60.179 50.000 20.82 13.85 44.52 3.96
314 315 0.965439 TTTTGTAGGGTGGCACATGC 59.035 50.000 20.82 11.31 44.52 4.06
315 316 2.513753 TCTTTTGTAGGGTGGCACATG 58.486 47.619 20.82 0.00 44.52 3.21
316 317 2.890945 GTTCTTTTGTAGGGTGGCACAT 59.109 45.455 20.82 9.91 44.52 3.21
317 318 2.092103 AGTTCTTTTGTAGGGTGGCACA 60.092 45.455 20.82 0.00 0.00 4.57
318 319 2.293399 CAGTTCTTTTGTAGGGTGGCAC 59.707 50.000 9.70 9.70 0.00 5.01
319 320 2.582052 CAGTTCTTTTGTAGGGTGGCA 58.418 47.619 0.00 0.00 0.00 4.92
320 321 1.269723 GCAGTTCTTTTGTAGGGTGGC 59.730 52.381 0.00 0.00 0.00 5.01
321 322 1.886542 GGCAGTTCTTTTGTAGGGTGG 59.113 52.381 0.00 0.00 0.00 4.61
322 323 2.582052 TGGCAGTTCTTTTGTAGGGTG 58.418 47.619 0.00 0.00 0.00 4.61
323 324 3.306472 TTGGCAGTTCTTTTGTAGGGT 57.694 42.857 0.00 0.00 0.00 4.34
324 325 4.664150 TTTTGGCAGTTCTTTTGTAGGG 57.336 40.909 0.00 0.00 0.00 3.53
325 326 5.841810 TCATTTTGGCAGTTCTTTTGTAGG 58.158 37.500 0.00 0.00 0.00 3.18
326 327 5.403466 GCTCATTTTGGCAGTTCTTTTGTAG 59.597 40.000 0.00 0.00 0.00 2.74
327 328 5.163468 TGCTCATTTTGGCAGTTCTTTTGTA 60.163 36.000 0.00 0.00 34.22 2.41
328 329 4.122046 GCTCATTTTGGCAGTTCTTTTGT 58.878 39.130 0.00 0.00 0.00 2.83
329 330 4.121317 TGCTCATTTTGGCAGTTCTTTTG 58.879 39.130 0.00 0.00 34.22 2.44
330 331 4.405116 TGCTCATTTTGGCAGTTCTTTT 57.595 36.364 0.00 0.00 34.22 2.27
331 332 4.122046 GTTGCTCATTTTGGCAGTTCTTT 58.878 39.130 0.00 0.00 39.68 2.52
332 333 3.493176 GGTTGCTCATTTTGGCAGTTCTT 60.493 43.478 0.00 0.00 39.68 2.52
333 334 2.036346 GGTTGCTCATTTTGGCAGTTCT 59.964 45.455 0.00 0.00 39.68 3.01
334 335 2.224018 TGGTTGCTCATTTTGGCAGTTC 60.224 45.455 0.00 0.00 39.68 3.01
335 336 1.761784 TGGTTGCTCATTTTGGCAGTT 59.238 42.857 0.00 0.00 39.68 3.16
336 337 1.069049 GTGGTTGCTCATTTTGGCAGT 59.931 47.619 0.00 0.00 39.68 4.40
337 338 1.787012 GTGGTTGCTCATTTTGGCAG 58.213 50.000 0.00 0.00 39.68 4.85
338 339 0.031857 CGTGGTTGCTCATTTTGGCA 59.968 50.000 0.00 0.00 36.62 4.92
339 340 0.031994 ACGTGGTTGCTCATTTTGGC 59.968 50.000 0.00 0.00 0.00 4.52
340 341 2.507339 AACGTGGTTGCTCATTTTGG 57.493 45.000 0.00 0.00 0.00 3.28
341 342 5.046910 AGATAACGTGGTTGCTCATTTTG 57.953 39.130 0.00 0.00 0.00 2.44
342 343 5.705609 AAGATAACGTGGTTGCTCATTTT 57.294 34.783 0.00 0.00 0.00 1.82
343 344 5.335661 GGAAAGATAACGTGGTTGCTCATTT 60.336 40.000 0.00 0.00 0.00 2.32
344 345 4.156008 GGAAAGATAACGTGGTTGCTCATT 59.844 41.667 0.00 0.00 0.00 2.57
345 346 3.689649 GGAAAGATAACGTGGTTGCTCAT 59.310 43.478 0.00 0.00 0.00 2.90
346 347 3.071479 GGAAAGATAACGTGGTTGCTCA 58.929 45.455 0.00 0.00 0.00 4.26
347 348 3.071479 TGGAAAGATAACGTGGTTGCTC 58.929 45.455 0.00 0.00 0.00 4.26
348 349 3.134574 TGGAAAGATAACGTGGTTGCT 57.865 42.857 0.00 0.00 0.00 3.91
349 350 5.751243 ATATGGAAAGATAACGTGGTTGC 57.249 39.130 0.00 0.00 0.00 4.17
395 396 4.838152 GGCGGGCAGAAGCGATGA 62.838 66.667 0.00 0.00 43.41 2.92
452 453 8.546597 AAACTGCGGCTTCAATTATTAAAAAT 57.453 26.923 0.00 0.00 0.00 1.82
453 454 7.870445 AGAAACTGCGGCTTCAATTATTAAAAA 59.130 29.630 11.14 0.00 0.00 1.94
468 469 2.604614 CCACTACAAAAGAAACTGCGGC 60.605 50.000 0.00 0.00 0.00 6.53
471 472 5.065988 TGAGAACCACTACAAAAGAAACTGC 59.934 40.000 0.00 0.00 0.00 4.40
473 474 6.650120 TCTGAGAACCACTACAAAAGAAACT 58.350 36.000 0.00 0.00 0.00 2.66
477 478 6.036735 CGTTTTCTGAGAACCACTACAAAAGA 59.963 38.462 0.00 0.00 0.00 2.52
483 484 3.391049 AGCGTTTTCTGAGAACCACTAC 58.609 45.455 0.00 0.00 0.00 2.73
492 493 7.858052 ATGTAAAAATGAAGCGTTTTCTGAG 57.142 32.000 0.00 0.00 32.29 3.35
531 532 5.427157 AGGACTGGTTTGGTTATTTTGGTTT 59.573 36.000 0.00 0.00 0.00 3.27
534 535 4.021456 GGAGGACTGGTTTGGTTATTTTGG 60.021 45.833 0.00 0.00 0.00 3.28
536 537 3.824443 CGGAGGACTGGTTTGGTTATTTT 59.176 43.478 0.00 0.00 0.00 1.82
539 540 1.339727 GCGGAGGACTGGTTTGGTTAT 60.340 52.381 0.00 0.00 0.00 1.89
540 541 0.035739 GCGGAGGACTGGTTTGGTTA 59.964 55.000 0.00 0.00 0.00 2.85
541 542 1.228154 GCGGAGGACTGGTTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
542 543 2.430367 GCGGAGGACTGGTTTGGT 59.570 61.111 0.00 0.00 0.00 3.67
543 544 2.359975 GGCGGAGGACTGGTTTGG 60.360 66.667 0.00 0.00 0.00 3.28
544 545 1.376037 GAGGCGGAGGACTGGTTTG 60.376 63.158 0.00 0.00 0.00 2.93
545 546 2.593956 GGAGGCGGAGGACTGGTTT 61.594 63.158 0.00 0.00 0.00 3.27
546 547 3.003763 GGAGGCGGAGGACTGGTT 61.004 66.667 0.00 0.00 0.00 3.67
547 548 3.966930 GAGGAGGCGGAGGACTGGT 62.967 68.421 0.00 0.00 0.00 4.00
548 549 3.151022 GAGGAGGCGGAGGACTGG 61.151 72.222 0.00 0.00 0.00 4.00
549 550 2.043450 AGAGGAGGCGGAGGACTG 60.043 66.667 0.00 0.00 0.00 3.51
550 551 2.277404 GAGAGGAGGCGGAGGACT 59.723 66.667 0.00 0.00 0.00 3.85
551 552 2.835895 GGAGAGGAGGCGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
578 579 2.892425 GAGGTTCTGCGGGCGATG 60.892 66.667 0.00 0.00 0.00 3.84
594 595 1.002624 GAGCGATGGGTTTGGGTGA 60.003 57.895 0.00 0.00 0.00 4.02
597 598 3.508840 GCGAGCGATGGGTTTGGG 61.509 66.667 0.00 0.00 0.00 4.12
600 601 2.509336 CGAGCGAGCGATGGGTTT 60.509 61.111 0.00 0.00 0.00 3.27
644 645 3.141488 CGTCCTCCCAGTCTCCCG 61.141 72.222 0.00 0.00 0.00 5.14
726 727 1.210413 CTCCTATCGCCATCGGACG 59.790 63.158 0.00 0.00 36.13 4.79
728 729 2.626780 CGCTCCTATCGCCATCGGA 61.627 63.158 0.00 0.00 36.13 4.55
732 733 2.279069 CCCTCGCTCCTATCGCCAT 61.279 63.158 0.00 0.00 0.00 4.40
735 736 4.708968 CGCCCTCGCTCCTATCGC 62.709 72.222 0.00 0.00 0.00 4.58
816 817 4.148825 CCTTGGCCTCGTCCTCCG 62.149 72.222 3.32 0.00 38.13 4.63
839 840 2.031163 GCTCACCTTGTCCTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
841 842 2.743928 CGGCTCACCTTGTCCTGC 60.744 66.667 0.00 0.00 0.00 4.85
878 879 2.366167 CAGAGGGAGGCAGGAGGA 59.634 66.667 0.00 0.00 0.00 3.71
884 885 1.304282 GAATTGGCAGAGGGAGGCA 59.696 57.895 0.00 0.00 40.01 4.75
919 920 3.181520 ACGTCAACGAGCAGCAATAAATC 60.182 43.478 9.88 0.00 43.02 2.17
934 935 0.320508 GGGAGGAGGAACACGTCAAC 60.321 60.000 0.00 0.00 35.64 3.18
946 947 2.445654 GAGGCAGAGGGGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
947 948 4.095400 GGAGGCAGAGGGGGAGGA 62.095 72.222 0.00 0.00 0.00 3.71
1089 1091 0.824109 CATGGGCGTAGTGAGAGGAA 59.176 55.000 0.00 0.00 0.00 3.36
1093 1095 2.731571 GGGCATGGGCGTAGTGAGA 61.732 63.158 0.00 0.00 42.47 3.27
1141 1143 0.604578 GCATGTGGGTGTTGCATTCT 59.395 50.000 0.00 0.00 36.40 2.40
1142 1144 0.604578 AGCATGTGGGTGTTGCATTC 59.395 50.000 0.00 0.00 38.84 2.67
1143 1145 1.820519 CTAGCATGTGGGTGTTGCATT 59.179 47.619 0.00 0.00 38.84 3.56
1279 1281 1.269012 CCCTTTCATGGCATTGGTGT 58.731 50.000 0.00 0.00 0.00 4.16
1539 1542 7.701539 TCTACAATAGGCACAACAAATCATT 57.298 32.000 0.00 0.00 0.00 2.57
1674 1817 0.257039 AGGCCTTTAGCACCCAGATG 59.743 55.000 0.00 0.00 46.50 2.90
1765 1913 8.919145 ACAGGAAAGAGACTATAAACATAGGAG 58.081 37.037 0.00 0.00 0.00 3.69
2076 3100 1.661509 TCAGCGACAGTGACAAGCG 60.662 57.895 0.00 0.00 0.00 4.68
2079 3103 1.731093 TCGTCAGCGACAGTGACAA 59.269 52.632 0.00 0.00 43.90 3.18
2231 3260 1.781555 GACCGCAGTGACAATGTCG 59.218 57.895 9.00 8.47 34.95 4.35
2281 3310 0.811616 GCTCCATACCTCAACCAGCG 60.812 60.000 0.00 0.00 0.00 5.18
2288 3317 1.352083 GCCCTATGCTCCATACCTCA 58.648 55.000 0.00 0.00 36.87 3.86
2294 3323 1.750930 CTCACGCCCTATGCTCCAT 59.249 57.895 0.00 0.00 38.05 3.41
2467 3498 0.039074 GTGGTCTGAGTCAGTGACGG 60.039 60.000 19.53 11.67 37.67 4.79
2811 3882 4.019858 TCTAGAACTGACCTGAGGATGTG 58.980 47.826 4.99 0.00 0.00 3.21
3006 4082 1.724973 GCTTCTGTTTCGCTTTACGGC 60.725 52.381 0.00 0.00 43.89 5.68
3101 4178 2.494888 TCATGGGGGCAGAGAATAGA 57.505 50.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.