Multiple sequence alignment - TraesCS6A01G084200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G084200 chr6A 100.000 3776 0 0 1 3776 52394566 52398341 0.000000e+00 6974
1 TraesCS6A01G084200 chr6B 85.167 1618 169 33 1 1575 95331731 95330142 0.000000e+00 1592
2 TraesCS6A01G084200 chr6B 94.512 911 47 3 2100 3007 95329517 95328607 0.000000e+00 1402
3 TraesCS6A01G084200 chr6B 85.670 321 37 5 3464 3776 95328219 95327900 2.810000e-86 329
4 TraesCS6A01G084200 chr6B 80.905 398 64 11 3008 3397 88890790 88891183 1.700000e-78 303
5 TraesCS6A01G084200 chr6D 91.556 900 46 12 2116 3007 41926804 41927681 0.000000e+00 1214
6 TraesCS6A01G084200 chr6D 87.420 938 83 23 652 1580 41925294 41926205 0.000000e+00 1046
7 TraesCS6A01G084200 chr6D 85.577 416 49 9 3008 3415 144066039 144066451 3.490000e-115 425
8 TraesCS6A01G084200 chr6D 87.464 343 40 3 289 631 41924610 41924949 3.540000e-105 392
9 TraesCS6A01G084200 chr6D 85.535 318 33 7 3466 3775 41927748 41928060 1.690000e-83 320
10 TraesCS6A01G084200 chr1B 86.331 417 40 15 3007 3411 333600066 333599655 4.480000e-119 438
11 TraesCS6A01G084200 chr1D 85.437 412 50 9 3007 3411 240611030 240611438 1.620000e-113 420
12 TraesCS6A01G084200 chr1D 82.039 412 62 11 3008 3411 465823141 465822734 1.300000e-89 340
13 TraesCS6A01G084200 chr1D 80.000 390 68 8 3021 3408 175763279 175763660 2.870000e-71 279
14 TraesCS6A01G084200 chr7D 87.772 368 32 10 3050 3407 288465096 288465460 5.830000e-113 418
15 TraesCS6A01G084200 chr7A 81.663 409 63 11 3008 3411 716231120 716231521 2.810000e-86 329
16 TraesCS6A01G084200 chr5A 81.773 406 60 13 3008 3408 520586712 520587108 1.010000e-85 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G084200 chr6A 52394566 52398341 3775 False 6974.000000 6974 100.000000 1 3776 1 chr6A.!!$F1 3775
1 TraesCS6A01G084200 chr6B 95327900 95331731 3831 True 1107.666667 1592 88.449667 1 3776 3 chr6B.!!$R1 3775
2 TraesCS6A01G084200 chr6D 41924610 41928060 3450 False 743.000000 1214 87.993750 289 3775 4 chr6D.!!$F2 3486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 322 0.107831 TGTGTTGGGCTGACTGTACC 59.892 55.0 0.0 0.0 0.0 3.34 F
1682 2072 0.037326 TCCGGTTCAGTTGCTGCTAG 60.037 55.0 0.0 0.0 0.0 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2652 0.040958 CGACAAGTGGCACAAGCTTC 60.041 55.0 21.41 7.46 44.16 3.86 R
3280 3822 0.033781 GTGCCCGTTGTACACCTGTA 59.966 55.0 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.053455 GTCCTCAACTTGTCTGTCTTCG 58.947 50.000 0.00 0.00 0.00 3.79
61 62 2.429250 TCAACTTGTCTGTCTTCGTGGA 59.571 45.455 0.00 0.00 0.00 4.02
66 67 2.805353 CTGTCTTCGTGGACGCCG 60.805 66.667 0.00 0.00 38.91 6.46
67 68 3.553437 CTGTCTTCGTGGACGCCGT 62.553 63.158 0.00 0.00 38.91 5.68
69 70 3.289062 TCTTCGTGGACGCCGTCA 61.289 61.111 20.08 2.30 39.60 4.35
72 73 0.457166 CTTCGTGGACGCCGTCATTA 60.457 55.000 20.08 1.59 39.60 1.90
95 96 3.144506 GGATCATGTTCATCATCGCCTT 58.855 45.455 6.14 0.00 34.09 4.35
96 97 3.058432 GGATCATGTTCATCATCGCCTTG 60.058 47.826 6.14 0.00 34.09 3.61
99 100 1.358877 TGTTCATCATCGCCTTGTCG 58.641 50.000 0.00 0.00 0.00 4.35
101 102 1.590238 GTTCATCATCGCCTTGTCGAG 59.410 52.381 0.00 0.00 42.14 4.04
104 119 2.002586 CATCATCGCCTTGTCGAGTTT 58.997 47.619 0.00 0.00 42.14 2.66
112 127 1.071699 CCTTGTCGAGTTTGGGAAGGA 59.928 52.381 0.00 0.00 33.17 3.36
115 130 3.502123 TGTCGAGTTTGGGAAGGAATT 57.498 42.857 0.00 0.00 0.00 2.17
124 139 3.231207 TGGGAAGGAATTCCGTGAAAA 57.769 42.857 18.22 1.33 42.02 2.29
129 144 4.320275 GGAAGGAATTCCGTGAAAAGTGAC 60.320 45.833 18.22 0.00 42.08 3.67
130 145 3.815809 AGGAATTCCGTGAAAAGTGACA 58.184 40.909 18.82 0.00 42.08 3.58
131 146 4.204012 AGGAATTCCGTGAAAAGTGACAA 58.796 39.130 18.82 0.00 42.08 3.18
136 151 1.002900 CCGTGAAAAGTGACAACGCAT 60.003 47.619 0.00 0.00 0.00 4.73
143 158 0.819259 AGTGACAACGCATTGCCAGT 60.819 50.000 2.41 0.00 39.66 4.00
145 160 1.210155 GACAACGCATTGCCAGTCC 59.790 57.895 2.41 0.00 39.66 3.85
149 164 2.360350 CGCATTGCCAGTCCAGGT 60.360 61.111 2.41 0.00 0.00 4.00
166 181 0.613777 GGTCTCCATGGACGGAAACT 59.386 55.000 11.44 0.00 37.12 2.66
172 187 1.203994 CCATGGACGGAAACTACGACT 59.796 52.381 5.56 0.00 34.93 4.18
181 196 2.031930 GGAAACTACGACTAGAGGAGCG 59.968 54.545 0.00 0.00 0.00 5.03
184 199 2.709213 ACTACGACTAGAGGAGCGTTT 58.291 47.619 0.00 0.00 38.38 3.60
185 200 2.419324 ACTACGACTAGAGGAGCGTTTG 59.581 50.000 0.00 0.00 38.38 2.93
207 222 0.109873 ACTCGGCGAACAAGTAGTCG 60.110 55.000 12.13 0.00 0.00 4.18
211 226 1.494824 GGCGAACAAGTAGTCGTTGT 58.505 50.000 0.00 0.00 39.89 3.32
218 233 4.133013 ACAAGTAGTCGTTGTTGAGGTT 57.867 40.909 0.00 0.00 34.37 3.50
229 244 2.761559 TGTTGAGGTTGATGGTGTACG 58.238 47.619 0.00 0.00 0.00 3.67
230 245 2.073816 GTTGAGGTTGATGGTGTACGG 58.926 52.381 0.00 0.00 0.00 4.02
231 246 1.344065 TGAGGTTGATGGTGTACGGT 58.656 50.000 0.00 0.00 0.00 4.83
234 249 0.322322 GGTTGATGGTGTACGGTGGA 59.678 55.000 0.00 0.00 0.00 4.02
239 254 1.550130 ATGGTGTACGGTGGAGGGTG 61.550 60.000 0.00 0.00 0.00 4.61
262 277 2.494059 CGAAGGTGGAGCTGAAGAAAA 58.506 47.619 0.00 0.00 0.00 2.29
268 283 1.228657 GGAGCTGAAGAAAACGGCGT 61.229 55.000 6.77 6.77 43.44 5.68
278 293 1.997606 GAAAACGGCGTAGTGCTACAT 59.002 47.619 15.20 0.00 45.43 2.29
293 308 3.812609 TGCTACATCGATTGTTGTGTGTT 59.187 39.130 6.88 0.00 39.87 3.32
306 321 1.226746 GTGTGTTGGGCTGACTGTAC 58.773 55.000 0.00 0.00 0.00 2.90
307 322 0.107831 TGTGTTGGGCTGACTGTACC 59.892 55.000 0.00 0.00 0.00 3.34
309 324 1.370064 GTTGGGCTGACTGTACCGT 59.630 57.895 0.00 0.00 0.00 4.83
311 326 1.404479 TTGGGCTGACTGTACCGTGT 61.404 55.000 0.00 0.00 0.00 4.49
327 342 1.402968 CGTGTGGTGGCGTAGTAGTAT 59.597 52.381 0.00 0.00 0.00 2.12
330 345 2.424601 TGTGGTGGCGTAGTAGTATGAC 59.575 50.000 0.69 0.00 0.00 3.06
371 386 2.434884 CTGCGATTGCCCGTGAGT 60.435 61.111 1.50 0.00 41.78 3.41
384 399 1.522806 GTGAGTCACCAACACGGCA 60.523 57.895 12.54 0.00 39.03 5.69
411 426 0.620556 GTGGAGGAATTGGAGCTCCA 59.379 55.000 32.00 32.00 45.94 3.86
463 478 0.109689 CCTCTCCTTCACGTGTCGTC 60.110 60.000 16.51 0.00 38.32 4.20
468 483 1.557443 CCTTCACGTGTCGTCCTTGC 61.557 60.000 16.51 0.00 38.32 4.01
496 511 1.472082 TGACGCTATTGCATTGTTGGG 59.528 47.619 0.00 0.00 39.64 4.12
514 529 0.966920 GGAGTTCTTCCGGTCTGACA 59.033 55.000 10.38 0.00 35.91 3.58
563 578 3.070878 GGATTGAGAGAGGAGGGATTGTC 59.929 52.174 0.00 0.00 0.00 3.18
570 585 4.290722 AGAGAGGAGGGATTGTCAAATTGT 59.709 41.667 0.00 0.00 0.00 2.71
579 594 3.724508 TTGTCAAATTGTGCGGACATT 57.275 38.095 11.62 4.29 39.73 2.71
604 619 0.114364 GGTTTTGGGTGGGTCCTGAT 59.886 55.000 0.00 0.00 36.25 2.90
624 639 0.184692 TGTCAGGGTTTGATGTGGCA 59.815 50.000 0.00 0.00 38.29 4.92
649 664 4.039609 ACGTATAAACTCCCCCGATTTAGG 59.960 45.833 0.00 0.00 0.00 2.69
650 665 4.281688 CGTATAAACTCCCCCGATTTAGGA 59.718 45.833 0.00 0.00 0.00 2.94
663 1002 2.241281 TTTAGGATCAGACCGTGGGA 57.759 50.000 0.00 0.00 34.73 4.37
709 1048 3.605634 CCTGATTTGGTGATACCGTTCA 58.394 45.455 0.00 0.00 42.58 3.18
724 1063 2.043411 CGTTCAGTCCAAACATTTGCG 58.957 47.619 0.00 0.00 36.86 4.85
725 1064 2.540769 CGTTCAGTCCAAACATTTGCGT 60.541 45.455 0.00 0.00 36.86 5.24
734 1073 3.369147 CCAAACATTTGCGTGTGTTTTGA 59.631 39.130 9.54 0.00 43.80 2.69
739 1078 3.773860 TTTGCGTGTGTTTTGATGACT 57.226 38.095 0.00 0.00 0.00 3.41
747 1086 2.033236 GTGTTTTGATGACTCGCGTTGA 60.033 45.455 5.77 0.00 0.00 3.18
769 1108 0.324275 ATGCCCTAACCCGTTTGCAT 60.324 50.000 0.00 0.00 34.81 3.96
835 1174 3.866582 GGACGAGGCCCCATCCAG 61.867 72.222 11.11 0.00 0.00 3.86
852 1203 3.376078 GACCGTCCACGTAGGCCA 61.376 66.667 5.01 0.00 37.29 5.36
873 1224 1.747325 GCCACCTCAGCAAAAAGGCA 61.747 55.000 0.00 0.00 40.29 4.75
921 1272 0.178891 TGTCCAAGCCCCTCTCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
922 1273 0.251634 GTCCAAGCCCCTCTCTCTTG 59.748 60.000 0.00 0.00 37.52 3.02
929 1282 1.113788 CCCCTCTCTCTTGCTCTCAG 58.886 60.000 0.00 0.00 0.00 3.35
1027 1382 3.020237 GCGACCTCCACCTTCTCCC 62.020 68.421 0.00 0.00 0.00 4.30
1029 1384 2.284699 ACCTCCACCTTCTCCCCG 60.285 66.667 0.00 0.00 0.00 5.73
1409 1796 0.818445 CCCCTTCATGCTGCTGCTAG 60.818 60.000 17.00 9.06 40.48 3.42
1410 1797 1.445716 CCCTTCATGCTGCTGCTAGC 61.446 60.000 17.00 8.10 43.95 3.42
1412 1799 1.202615 CCTTCATGCTGCTGCTAGCTA 60.203 52.381 17.23 1.31 42.97 3.32
1413 1800 2.558378 CTTCATGCTGCTGCTAGCTAA 58.442 47.619 17.23 12.53 42.97 3.09
1414 1801 2.235845 TCATGCTGCTGCTAGCTAAG 57.764 50.000 17.23 11.43 42.97 2.18
1415 1802 1.483827 TCATGCTGCTGCTAGCTAAGT 59.516 47.619 17.23 6.09 42.97 2.24
1416 1803 2.695147 TCATGCTGCTGCTAGCTAAGTA 59.305 45.455 17.23 10.32 42.97 2.24
1417 1804 2.879002 TGCTGCTGCTAGCTAAGTAG 57.121 50.000 17.23 15.13 42.97 2.57
1435 1822 2.875485 CAGTGGACATGCTGCTGC 59.125 61.111 8.89 8.89 40.20 5.25
1436 1823 1.674651 CAGTGGACATGCTGCTGCT 60.675 57.895 17.00 0.00 40.48 4.24
1437 1824 0.392060 CAGTGGACATGCTGCTGCTA 60.392 55.000 17.00 3.79 40.48 3.49
1438 1825 0.107800 AGTGGACATGCTGCTGCTAG 60.108 55.000 17.00 11.12 40.48 3.42
1439 1826 1.450848 TGGACATGCTGCTGCTAGC 60.451 57.895 17.00 8.10 43.95 3.42
1440 1827 1.153208 GGACATGCTGCTGCTAGCT 60.153 57.895 17.23 0.00 42.97 3.32
1441 1828 0.105593 GGACATGCTGCTGCTAGCTA 59.894 55.000 17.23 1.31 42.97 3.32
1446 1833 2.879002 TGCTGCTGCTAGCTAAGTAG 57.121 50.000 17.23 15.13 42.97 2.57
1462 1849 2.530701 AGTAGCAGTGGACAGTAAGCT 58.469 47.619 0.00 0.00 36.20 3.74
1469 1856 3.620374 CAGTGGACAGTAAGCTAAGCATG 59.380 47.826 0.00 0.00 0.00 4.06
1485 1872 4.644103 AGCATGTCACAGCATTTTATCC 57.356 40.909 0.00 0.00 0.00 2.59
1502 1889 3.483587 CGGATCCGGATGGGGAAT 58.516 61.111 26.95 0.00 40.09 3.01
1504 1891 0.981183 CGGATCCGGATGGGGAATTA 59.019 55.000 26.95 0.00 40.09 1.40
1505 1892 1.559682 CGGATCCGGATGGGGAATTAT 59.440 52.381 26.95 0.00 40.09 1.28
1506 1893 2.769663 CGGATCCGGATGGGGAATTATA 59.230 50.000 26.95 0.00 40.09 0.98
1507 1894 3.181465 CGGATCCGGATGGGGAATTATAG 60.181 52.174 26.95 0.00 40.09 1.31
1515 1902 4.227527 GGATGGGGAATTATAGACGGGATT 59.772 45.833 0.00 0.00 0.00 3.01
1518 1905 3.244770 GGGGAATTATAGACGGGATTGCA 60.245 47.826 0.00 0.00 0.00 4.08
1520 1907 4.505039 GGGAATTATAGACGGGATTGCACT 60.505 45.833 0.00 0.00 0.00 4.40
1522 1909 6.228258 GGAATTATAGACGGGATTGCACTTA 58.772 40.000 0.00 0.00 0.00 2.24
1524 1911 7.148407 GGAATTATAGACGGGATTGCACTTATG 60.148 40.741 0.00 0.00 0.00 1.90
1539 1926 4.816385 GCACTTATGCCAATAGAGCAAGTA 59.184 41.667 0.00 0.00 46.97 2.24
1543 1930 6.484643 ACTTATGCCAATAGAGCAAGTACATG 59.515 38.462 0.00 0.00 44.83 3.21
1564 1951 6.320672 ACATGCATTTTCCTTGAGGATTCTAG 59.679 38.462 0.00 0.00 44.98 2.43
1565 1952 5.819991 TGCATTTTCCTTGAGGATTCTAGT 58.180 37.500 0.00 0.00 44.98 2.57
1575 1962 4.693283 TGAGGATTCTAGTAATGGTTGCG 58.307 43.478 0.00 0.00 0.00 4.85
1580 1967 2.469826 TCTAGTAATGGTTGCGCGATG 58.530 47.619 12.10 0.00 0.00 3.84
1581 1968 0.934496 TAGTAATGGTTGCGCGATGC 59.066 50.000 12.10 0.00 46.70 3.91
1599 1986 1.059369 CGAGCGACGCCTTTTGATG 59.941 57.895 17.79 0.00 34.51 3.07
1601 1988 0.095417 GAGCGACGCCTTTTGATGTC 59.905 55.000 17.79 0.00 0.00 3.06
1606 1993 2.774007 GACGCCTTTTGATGTCGAATG 58.226 47.619 0.00 0.00 0.00 2.67
1607 1994 2.151202 ACGCCTTTTGATGTCGAATGT 58.849 42.857 0.00 0.00 0.00 2.71
1608 1995 2.159627 ACGCCTTTTGATGTCGAATGTC 59.840 45.455 0.00 0.00 0.00 3.06
1609 1996 2.476185 CGCCTTTTGATGTCGAATGTCC 60.476 50.000 0.00 0.00 0.00 4.02
1611 1998 3.181506 GCCTTTTGATGTCGAATGTCCTC 60.182 47.826 0.00 0.00 0.00 3.71
1612 1999 3.062639 CCTTTTGATGTCGAATGTCCTCG 59.937 47.826 0.00 0.00 40.25 4.63
1613 2000 3.586100 TTTGATGTCGAATGTCCTCGA 57.414 42.857 0.00 0.00 45.22 4.04
1620 2007 3.942130 TCGAATGTCCTCGATGCATAT 57.058 42.857 0.00 0.00 42.69 1.78
1621 2008 3.578688 TCGAATGTCCTCGATGCATATG 58.421 45.455 0.00 0.00 42.69 1.78
1623 2010 4.082026 TCGAATGTCCTCGATGCATATGAT 60.082 41.667 6.97 0.00 42.69 2.45
1624 2011 4.032558 CGAATGTCCTCGATGCATATGATG 59.967 45.833 6.97 0.00 41.44 3.07
1625 2012 3.323751 TGTCCTCGATGCATATGATGG 57.676 47.619 6.97 5.08 0.00 3.51
1626 2013 2.899256 TGTCCTCGATGCATATGATGGA 59.101 45.455 6.97 7.25 34.26 3.41
1627 2014 3.516700 TGTCCTCGATGCATATGATGGAT 59.483 43.478 6.97 0.00 44.43 3.41
1634 2021 1.445871 GCATATGATGGATGCGAGCA 58.554 50.000 6.97 0.00 40.29 4.26
1635 2022 1.397343 GCATATGATGGATGCGAGCAG 59.603 52.381 6.97 0.00 40.29 4.24
1647 2034 2.742372 GAGCAGCGCCTTTCGGAA 60.742 61.111 2.29 0.00 38.94 4.30
1648 2035 2.281484 AGCAGCGCCTTTCGGAAA 60.281 55.556 2.29 2.78 38.94 3.13
1649 2036 1.648467 GAGCAGCGCCTTTCGGAAAT 61.648 55.000 2.29 0.00 38.94 2.17
1650 2037 1.226407 GCAGCGCCTTTCGGAAATC 60.226 57.895 2.29 0.00 38.94 2.17
1651 2038 1.060937 CAGCGCCTTTCGGAAATCG 59.939 57.895 2.29 16.05 38.94 3.34
1652 2039 2.277310 GCGCCTTTCGGAAATCGC 60.277 61.111 23.95 23.95 39.05 4.58
1653 2040 3.034370 GCGCCTTTCGGAAATCGCA 62.034 57.895 28.79 3.00 39.98 5.10
1654 2041 1.226018 CGCCTTTCGGAAATCGCAC 60.226 57.895 17.56 2.52 39.05 5.34
1655 2042 1.226018 GCCTTTCGGAAATCGCACG 60.226 57.895 14.38 0.00 39.05 5.34
1665 2055 2.475685 GGAAATCGCACGTTAGCTTTCC 60.476 50.000 15.26 15.26 39.82 3.13
1678 2068 0.040067 GCTTTCCGGTTCAGTTGCTG 60.040 55.000 0.00 0.00 0.00 4.41
1679 2069 0.040067 CTTTCCGGTTCAGTTGCTGC 60.040 55.000 0.00 0.00 0.00 5.25
1680 2070 0.465460 TTTCCGGTTCAGTTGCTGCT 60.465 50.000 0.00 0.00 0.00 4.24
1682 2072 0.037326 TCCGGTTCAGTTGCTGCTAG 60.037 55.000 0.00 0.00 0.00 3.42
1717 2115 5.748402 AGATAATGCTCAGGATGACACAAA 58.252 37.500 0.00 0.00 42.56 2.83
1719 2117 2.936919 TGCTCAGGATGACACAAACT 57.063 45.000 0.00 0.00 42.56 2.66
1729 2148 2.564771 TGACACAAACTGAAGCAGAGG 58.435 47.619 0.82 0.00 35.18 3.69
1743 2162 2.707791 AGCAGAGGGATTTGCAGCTATA 59.292 45.455 0.00 0.00 42.67 1.31
1745 2164 4.533707 AGCAGAGGGATTTGCAGCTATATA 59.466 41.667 0.00 0.00 42.67 0.86
1746 2165 5.191323 AGCAGAGGGATTTGCAGCTATATAT 59.809 40.000 0.00 0.00 42.67 0.86
1747 2166 6.385176 AGCAGAGGGATTTGCAGCTATATATA 59.615 38.462 0.00 0.00 42.67 0.86
1748 2167 7.072202 AGCAGAGGGATTTGCAGCTATATATAT 59.928 37.037 0.00 0.00 42.67 0.86
1749 2168 7.172875 GCAGAGGGATTTGCAGCTATATATATG 59.827 40.741 5.44 0.00 40.02 1.78
1750 2169 8.209584 CAGAGGGATTTGCAGCTATATATATGT 58.790 37.037 5.44 0.00 0.00 2.29
1751 2170 8.209584 AGAGGGATTTGCAGCTATATATATGTG 58.790 37.037 5.44 2.05 0.00 3.21
1752 2171 6.769822 AGGGATTTGCAGCTATATATATGTGC 59.230 38.462 15.10 15.10 0.00 4.57
1753 2172 6.769822 GGGATTTGCAGCTATATATATGTGCT 59.230 38.462 19.61 17.34 0.00 4.40
1754 2173 7.933577 GGGATTTGCAGCTATATATATGTGCTA 59.066 37.037 18.43 13.39 32.29 3.49
1769 2188 2.700371 TGTGCTATACTCTCCATGGGTG 59.300 50.000 13.02 5.58 0.00 4.61
1782 2201 1.625818 CATGGGTGTCTAGGCCTATCC 59.374 57.143 14.30 12.99 0.00 2.59
1804 2223 3.578868 CGTGTTGCGCATTATTCGT 57.421 47.368 12.75 0.00 0.00 3.85
1808 2227 3.599339 CGTGTTGCGCATTATTCGTAGAG 60.599 47.826 12.75 0.00 38.43 2.43
1809 2228 2.284150 TGTTGCGCATTATTCGTAGAGC 59.716 45.455 12.75 0.00 38.43 4.09
1813 2232 2.342948 GCGCATTATTCGTAGAGCTAGC 59.657 50.000 6.62 6.62 38.43 3.42
1814 2233 2.590276 CGCATTATTCGTAGAGCTAGCG 59.410 50.000 9.55 0.00 38.43 4.26
1815 2234 2.917971 GCATTATTCGTAGAGCTAGCGG 59.082 50.000 9.55 0.00 38.43 5.52
1816 2235 2.701073 TTATTCGTAGAGCTAGCGGC 57.299 50.000 9.55 5.77 38.43 6.53
1827 2246 0.610687 GCTAGCGGCTCCCATATTCT 59.389 55.000 5.39 0.00 38.06 2.40
1828 2247 1.404851 GCTAGCGGCTCCCATATTCTC 60.405 57.143 5.39 0.00 38.06 2.87
1836 2255 1.112916 TCCCATATTCTCCGCAGCGA 61.113 55.000 18.75 1.08 0.00 4.93
1837 2256 0.249868 CCCATATTCTCCGCAGCGAA 60.250 55.000 18.75 2.51 0.00 4.70
1838 2257 1.143305 CCATATTCTCCGCAGCGAAG 58.857 55.000 18.75 5.14 0.00 3.79
1855 2343 2.001872 GAAGCGGAATTTTTGCATGGG 58.998 47.619 0.00 0.00 0.00 4.00
1856 2344 0.391528 AGCGGAATTTTTGCATGGGC 60.392 50.000 0.00 0.00 41.68 5.36
1881 2369 0.601311 GCCTCCGTATGCATCACTCC 60.601 60.000 0.19 0.00 0.00 3.85
1882 2370 0.752658 CCTCCGTATGCATCACTCCA 59.247 55.000 0.19 0.00 0.00 3.86
1906 2395 7.041508 CCATTTCTCAAGAGTGTTATAGATGGC 60.042 40.741 0.00 0.00 0.00 4.40
1919 2408 1.813513 AGATGGCAAGGTTCGACAAG 58.186 50.000 0.00 0.00 0.00 3.16
1921 2410 2.301870 AGATGGCAAGGTTCGACAAGTA 59.698 45.455 0.00 0.00 0.00 2.24
1925 2414 2.547218 GGCAAGGTTCGACAAGTAGACA 60.547 50.000 0.00 0.00 0.00 3.41
1929 2418 4.240175 AGGTTCGACAAGTAGACAGTTC 57.760 45.455 0.00 0.00 0.00 3.01
1931 2420 3.243636 GGTTCGACAAGTAGACAGTTCCA 60.244 47.826 0.00 0.00 0.00 3.53
1934 2423 5.209818 TCGACAAGTAGACAGTTCCAATT 57.790 39.130 0.00 0.00 0.00 2.32
1980 2469 8.029522 TGTAAAGTAGCTCTCACATCAAAGTAG 58.970 37.037 0.00 0.00 0.00 2.57
1981 2470 5.590530 AGTAGCTCTCACATCAAAGTAGG 57.409 43.478 0.00 0.00 0.00 3.18
1982 2471 5.265191 AGTAGCTCTCACATCAAAGTAGGA 58.735 41.667 0.00 0.00 0.00 2.94
1983 2472 4.734398 AGCTCTCACATCAAAGTAGGAG 57.266 45.455 0.00 0.00 0.00 3.69
1984 2473 4.093011 AGCTCTCACATCAAAGTAGGAGT 58.907 43.478 0.00 0.00 0.00 3.85
1985 2474 5.265191 AGCTCTCACATCAAAGTAGGAGTA 58.735 41.667 0.00 0.00 0.00 2.59
1992 2481 9.175312 CTCACATCAAAGTAGGAGTACTAACTA 57.825 37.037 0.00 0.00 38.66 2.24
2053 2546 5.659440 TCTGAACTAATTCCAAATTGGGC 57.341 39.130 12.67 0.00 38.32 5.36
2054 2547 4.466015 TCTGAACTAATTCCAAATTGGGCC 59.534 41.667 12.67 0.00 38.32 5.80
2055 2548 4.163427 TGAACTAATTCCAAATTGGGCCA 58.837 39.130 12.67 0.00 38.32 5.36
2056 2549 4.782156 TGAACTAATTCCAAATTGGGCCAT 59.218 37.500 7.26 0.00 38.32 4.40
2058 2551 4.623863 ACTAATTCCAAATTGGGCCATCT 58.376 39.130 7.26 0.00 38.32 2.90
2081 2575 4.367450 TGCCAACTGTTTTACATTTCTGC 58.633 39.130 0.00 0.00 0.00 4.26
2088 2582 6.265577 ACTGTTTTACATTTCTGCAGTGTTC 58.734 36.000 14.67 4.00 34.87 3.18
2089 2583 5.587289 TGTTTTACATTTCTGCAGTGTTCC 58.413 37.500 14.67 1.22 0.00 3.62
2100 2594 2.983402 CAGTGTTCCTGCATGAAGTG 57.017 50.000 4.51 0.24 33.59 3.16
2101 2595 1.538512 CAGTGTTCCTGCATGAAGTGG 59.461 52.381 4.51 0.00 33.59 4.00
2103 2597 0.111061 TGTTCCTGCATGAAGTGGCT 59.889 50.000 4.51 0.00 0.00 4.75
2104 2598 1.350684 TGTTCCTGCATGAAGTGGCTA 59.649 47.619 4.51 0.00 0.00 3.93
2105 2599 1.740025 GTTCCTGCATGAAGTGGCTAC 59.260 52.381 4.51 0.00 0.00 3.58
2111 2643 2.553602 TGCATGAAGTGGCTACTTGTTG 59.446 45.455 21.22 16.87 46.79 3.33
2120 2652 3.011818 TGGCTACTTGTTGATCATGCAG 58.988 45.455 0.00 0.00 0.00 4.41
2126 2658 3.825014 ACTTGTTGATCATGCAGAAGCTT 59.175 39.130 0.00 0.00 42.74 3.74
2127 2659 3.842732 TGTTGATCATGCAGAAGCTTG 57.157 42.857 2.10 0.00 44.70 4.01
2138 2670 1.002033 CAGAAGCTTGTGCCACTTGTC 60.002 52.381 11.04 0.00 40.80 3.18
2141 2673 0.463654 AGCTTGTGCCACTTGTCGAA 60.464 50.000 0.00 0.00 40.80 3.71
2142 2674 0.317020 GCTTGTGCCACTTGTCGAAC 60.317 55.000 0.00 0.00 0.00 3.95
2155 2687 0.233332 GTCGAACTGCTGCAGTGAAC 59.767 55.000 33.53 25.49 44.62 3.18
2158 2690 1.845809 GAACTGCTGCAGTGAACGGG 61.846 60.000 33.53 7.87 44.62 5.28
2240 2772 0.106819 CCAGGAGGAGGAAATGGCTG 60.107 60.000 0.00 0.00 36.89 4.85
2388 2920 9.341899 CTTGAATCCTTTCGGTTTAAATAACAG 57.658 33.333 0.00 0.00 34.39 3.16
2404 2936 9.781834 TTAAATAACAGAATTATGTGCTTTCGG 57.218 29.630 6.46 0.00 32.52 4.30
2410 2942 5.462068 CAGAATTATGTGCTTTCGGTCGATA 59.538 40.000 0.00 0.00 0.00 2.92
2424 2956 2.413837 GTCGATACAAACTGCTGGTGT 58.586 47.619 7.24 7.24 0.00 4.16
2428 2960 4.449743 TCGATACAAACTGCTGGTGTAAAC 59.550 41.667 11.57 8.93 31.85 2.01
2506 3043 8.030692 TGGCTTTTCATTTCACATCTTCTAATG 58.969 33.333 0.00 0.00 0.00 1.90
2507 3044 8.246180 GGCTTTTCATTTCACATCTTCTAATGA 58.754 33.333 0.00 0.00 34.44 2.57
2779 3316 1.408822 CCGGGCCAAAGAAATAGCTCT 60.409 52.381 4.39 0.00 0.00 4.09
2864 3406 9.313118 GTTTCTTTTATCAGCCTTCTTTTTCAA 57.687 29.630 0.00 0.00 0.00 2.69
2936 3478 4.547671 TGTGCTAGAGCCTAGAGGTAAAT 58.452 43.478 11.96 0.00 41.18 1.40
2967 3509 5.390779 GCGGGTTATTTAGCTGAACGTTTTA 60.391 40.000 0.46 0.00 32.13 1.52
2980 3522 3.925688 ACGTTTTACTGCTGCATATCG 57.074 42.857 1.31 5.63 0.00 2.92
2995 3537 3.242739 GCATATCGTTGCAGGGTTACAAG 60.243 47.826 0.00 0.00 42.31 3.16
2996 3538 2.561478 ATCGTTGCAGGGTTACAAGT 57.439 45.000 0.00 0.00 0.00 3.16
3007 3549 5.772521 CAGGGTTACAAGTCAAAATCTTGG 58.227 41.667 9.82 0.00 44.29 3.61
3008 3550 5.534654 CAGGGTTACAAGTCAAAATCTTGGA 59.465 40.000 9.82 0.00 44.29 3.53
3010 3552 5.048013 GGGTTACAAGTCAAAATCTTGGAGG 60.048 44.000 9.82 0.00 44.29 4.30
3011 3553 5.768164 GGTTACAAGTCAAAATCTTGGAGGA 59.232 40.000 9.82 0.00 44.29 3.71
3013 3555 7.039714 GGTTACAAGTCAAAATCTTGGAGGATT 60.040 37.037 9.82 0.00 44.29 3.01
3016 3558 6.324770 ACAAGTCAAAATCTTGGAGGATTTGT 59.675 34.615 9.82 0.00 42.77 2.83
3017 3559 7.505585 ACAAGTCAAAATCTTGGAGGATTTGTA 59.494 33.333 9.82 0.00 42.77 2.41
3018 3560 7.693969 AGTCAAAATCTTGGAGGATTTGTAG 57.306 36.000 3.68 0.00 42.77 2.74
3019 3561 6.151817 AGTCAAAATCTTGGAGGATTTGTAGC 59.848 38.462 3.68 0.00 42.77 3.58
3020 3562 6.151817 GTCAAAATCTTGGAGGATTTGTAGCT 59.848 38.462 0.00 0.00 42.77 3.32
3021 3563 6.375455 TCAAAATCTTGGAGGATTTGTAGCTC 59.625 38.462 0.00 0.00 42.77 4.09
3022 3564 5.707066 AATCTTGGAGGATTTGTAGCTCT 57.293 39.130 0.00 0.00 32.69 4.09
3023 3565 5.707066 ATCTTGGAGGATTTGTAGCTCTT 57.293 39.130 0.00 0.00 0.00 2.85
3024 3566 4.836825 TCTTGGAGGATTTGTAGCTCTTG 58.163 43.478 0.00 0.00 0.00 3.02
3025 3567 3.634397 TGGAGGATTTGTAGCTCTTGG 57.366 47.619 0.00 0.00 0.00 3.61
3026 3568 3.181329 TGGAGGATTTGTAGCTCTTGGA 58.819 45.455 0.00 0.00 0.00 3.53
3027 3569 3.782523 TGGAGGATTTGTAGCTCTTGGAT 59.217 43.478 0.00 0.00 0.00 3.41
3028 3570 4.133078 GGAGGATTTGTAGCTCTTGGATG 58.867 47.826 0.00 0.00 0.00 3.51
3031 3573 2.877097 TTTGTAGCTCTTGGATGCCA 57.123 45.000 0.00 0.00 0.00 4.92
3032 3574 2.113860 TTGTAGCTCTTGGATGCCAC 57.886 50.000 0.00 0.00 30.78 5.01
3033 3575 0.983467 TGTAGCTCTTGGATGCCACA 59.017 50.000 0.00 0.00 30.78 4.17
3035 3577 0.983467 TAGCTCTTGGATGCCACACA 59.017 50.000 0.00 0.00 30.78 3.72
3037 3579 1.589716 GCTCTTGGATGCCACACACC 61.590 60.000 0.00 0.00 30.78 4.16
3038 3580 0.962356 CTCTTGGATGCCACACACCC 60.962 60.000 0.00 0.00 30.78 4.61
3039 3581 1.978617 CTTGGATGCCACACACCCC 60.979 63.158 0.00 0.00 30.78 4.95
3044 3586 1.705186 GGATGCCACACACCCCTATAT 59.295 52.381 0.00 0.00 0.00 0.86
3045 3587 2.553028 GGATGCCACACACCCCTATATG 60.553 54.545 0.00 0.00 0.00 1.78
3046 3588 1.886422 TGCCACACACCCCTATATGA 58.114 50.000 0.00 0.00 0.00 2.15
3047 3589 2.200955 TGCCACACACCCCTATATGAA 58.799 47.619 0.00 0.00 0.00 2.57
3049 3591 3.977326 TGCCACACACCCCTATATGAATA 59.023 43.478 0.00 0.00 0.00 1.75
3051 3593 5.788014 TGCCACACACCCCTATATGAATATA 59.212 40.000 0.00 0.00 0.00 0.86
3052 3594 6.070251 TGCCACACACCCCTATATGAATATAG 60.070 42.308 9.50 9.50 41.08 1.31
3053 3595 6.349300 CCACACACCCCTATATGAATATAGC 58.651 44.000 10.62 0.00 40.42 2.97
3054 3596 6.070251 CCACACACCCCTATATGAATATAGCA 60.070 42.308 10.62 0.00 40.42 3.49
3055 3597 6.818644 CACACACCCCTATATGAATATAGCAC 59.181 42.308 10.62 0.00 40.42 4.40
3056 3598 6.730977 ACACACCCCTATATGAATATAGCACT 59.269 38.462 10.62 0.00 40.42 4.40
3058 3600 8.758829 CACACCCCTATATGAATATAGCACTAA 58.241 37.037 10.62 0.00 40.42 2.24
3059 3601 8.982723 ACACCCCTATATGAATATAGCACTAAG 58.017 37.037 10.62 3.17 40.42 2.18
3060 3602 9.201989 CACCCCTATATGAATATAGCACTAAGA 57.798 37.037 10.62 0.00 40.42 2.10
3061 3603 9.784376 ACCCCTATATGAATATAGCACTAAGAA 57.216 33.333 10.62 0.00 40.42 2.52
3077 3619 9.914131 AGCACTAAGAAAATAACAGGAAATTTC 57.086 29.630 9.83 9.83 0.00 2.17
3078 3620 9.691362 GCACTAAGAAAATAACAGGAAATTTCA 57.309 29.630 19.49 0.00 33.53 2.69
3117 3659 5.186256 TGAAATATCAAACTAGGTGCCCA 57.814 39.130 0.00 0.00 30.99 5.36
3118 3660 5.765510 TGAAATATCAAACTAGGTGCCCAT 58.234 37.500 0.00 0.00 30.99 4.00
3119 3661 6.194235 TGAAATATCAAACTAGGTGCCCATT 58.806 36.000 0.00 0.00 30.99 3.16
3120 3662 6.096705 TGAAATATCAAACTAGGTGCCCATTG 59.903 38.462 0.00 0.00 30.99 2.82
3121 3663 2.969821 TCAAACTAGGTGCCCATTGT 57.030 45.000 0.00 0.00 0.00 2.71
3122 3664 4.584638 ATCAAACTAGGTGCCCATTGTA 57.415 40.909 0.00 0.00 0.00 2.41
3123 3665 3.681593 TCAAACTAGGTGCCCATTGTAC 58.318 45.455 0.00 0.00 0.00 2.90
3124 3666 3.073209 TCAAACTAGGTGCCCATTGTACA 59.927 43.478 0.00 0.00 0.00 2.90
3125 3667 2.781681 ACTAGGTGCCCATTGTACAC 57.218 50.000 0.00 0.00 0.00 2.90
3127 3669 4.012138 GGTGCCCATTGTACACCC 57.988 61.111 12.21 0.00 46.65 4.61
3128 3670 1.075836 GGTGCCCATTGTACACCCA 59.924 57.895 12.21 0.00 46.65 4.51
3129 3671 0.324275 GGTGCCCATTGTACACCCAT 60.324 55.000 12.21 0.00 46.65 4.00
3130 3672 0.817013 GTGCCCATTGTACACCCATG 59.183 55.000 0.00 0.00 0.00 3.66
3131 3673 0.407528 TGCCCATTGTACACCCATGT 59.592 50.000 0.00 0.00 43.30 3.21
3132 3674 1.203112 TGCCCATTGTACACCCATGTT 60.203 47.619 0.00 0.00 40.48 2.71
3133 3675 1.476488 GCCCATTGTACACCCATGTTC 59.524 52.381 0.00 0.00 40.48 3.18
3134 3676 2.883888 GCCCATTGTACACCCATGTTCT 60.884 50.000 0.00 0.00 40.48 3.01
3135 3677 2.754552 CCCATTGTACACCCATGTTCTG 59.245 50.000 0.00 0.00 40.48 3.02
3136 3678 3.420893 CCATTGTACACCCATGTTCTGT 58.579 45.455 0.00 0.00 40.48 3.41
3137 3679 3.826157 CCATTGTACACCCATGTTCTGTT 59.174 43.478 0.00 0.00 40.48 3.16
3138 3680 4.280677 CCATTGTACACCCATGTTCTGTTT 59.719 41.667 0.00 0.00 40.48 2.83
3139 3681 5.460646 CATTGTACACCCATGTTCTGTTTC 58.539 41.667 0.00 0.00 40.48 2.78
3140 3682 3.135225 TGTACACCCATGTTCTGTTTCG 58.865 45.455 0.00 0.00 40.48 3.46
3141 3683 2.341846 ACACCCATGTTCTGTTTCGT 57.658 45.000 0.00 0.00 34.46 3.85
3142 3684 1.946768 ACACCCATGTTCTGTTTCGTG 59.053 47.619 0.00 0.00 34.46 4.35
3143 3685 2.217750 CACCCATGTTCTGTTTCGTGA 58.782 47.619 0.00 0.00 0.00 4.35
3144 3686 2.616376 CACCCATGTTCTGTTTCGTGAA 59.384 45.455 0.00 0.00 0.00 3.18
3145 3687 2.878406 ACCCATGTTCTGTTTCGTGAAG 59.122 45.455 0.00 0.00 0.00 3.02
3146 3688 3.138304 CCCATGTTCTGTTTCGTGAAGA 58.862 45.455 0.00 0.00 0.00 2.87
3147 3689 3.563808 CCCATGTTCTGTTTCGTGAAGAA 59.436 43.478 0.00 0.00 37.01 2.52
3148 3690 4.216257 CCCATGTTCTGTTTCGTGAAGAAT 59.784 41.667 0.00 0.00 38.86 2.40
3149 3691 5.149273 CCATGTTCTGTTTCGTGAAGAATG 58.851 41.667 0.00 0.00 38.86 2.67
3150 3692 4.811555 TGTTCTGTTTCGTGAAGAATGG 57.188 40.909 0.00 0.00 38.86 3.16
3151 3693 4.447290 TGTTCTGTTTCGTGAAGAATGGA 58.553 39.130 0.00 0.00 38.86 3.41
3152 3694 5.063204 TGTTCTGTTTCGTGAAGAATGGAT 58.937 37.500 0.00 0.00 38.86 3.41
3153 3695 5.049474 TGTTCTGTTTCGTGAAGAATGGATG 60.049 40.000 0.00 0.00 38.86 3.51
3154 3696 3.436704 TCTGTTTCGTGAAGAATGGATGC 59.563 43.478 0.00 0.00 38.86 3.91
3155 3697 2.487762 TGTTTCGTGAAGAATGGATGCC 59.512 45.455 0.00 0.00 38.86 4.40
3156 3698 1.750193 TTCGTGAAGAATGGATGCCC 58.250 50.000 0.00 0.00 33.14 5.36
3157 3699 0.461870 TCGTGAAGAATGGATGCCCG 60.462 55.000 0.00 0.00 34.29 6.13
3158 3700 0.744414 CGTGAAGAATGGATGCCCGT 60.744 55.000 0.00 0.00 34.29 5.28
3159 3701 0.734889 GTGAAGAATGGATGCCCGTG 59.265 55.000 0.00 0.00 34.29 4.94
3160 3702 0.394216 TGAAGAATGGATGCCCGTGG 60.394 55.000 0.00 0.00 34.29 4.94
3161 3703 0.394352 GAAGAATGGATGCCCGTGGT 60.394 55.000 0.00 0.00 34.29 4.16
3162 3704 0.916086 AAGAATGGATGCCCGTGGTA 59.084 50.000 0.00 0.00 34.29 3.25
3163 3705 0.916086 AGAATGGATGCCCGTGGTAA 59.084 50.000 0.00 0.00 34.29 2.85
3164 3706 1.494721 AGAATGGATGCCCGTGGTAAT 59.505 47.619 0.00 0.00 34.29 1.89
3165 3707 1.880027 GAATGGATGCCCGTGGTAATC 59.120 52.381 0.00 0.00 34.29 1.75
3166 3708 1.140312 ATGGATGCCCGTGGTAATCT 58.860 50.000 0.00 0.00 34.29 2.40
3167 3709 0.468226 TGGATGCCCGTGGTAATCTC 59.532 55.000 0.00 0.00 34.29 2.75
3168 3710 0.600255 GGATGCCCGTGGTAATCTCG 60.600 60.000 0.00 0.00 0.00 4.04
3169 3711 0.600255 GATGCCCGTGGTAATCTCGG 60.600 60.000 0.00 0.00 43.30 4.63
3170 3712 1.335132 ATGCCCGTGGTAATCTCGGT 61.335 55.000 4.20 0.00 42.30 4.69
3171 3713 0.683828 TGCCCGTGGTAATCTCGGTA 60.684 55.000 4.20 0.00 42.30 4.02
3172 3714 0.461135 GCCCGTGGTAATCTCGGTAA 59.539 55.000 4.20 0.00 42.30 2.85
3173 3715 1.134729 GCCCGTGGTAATCTCGGTAAA 60.135 52.381 4.20 0.00 42.30 2.01
3174 3716 2.677613 GCCCGTGGTAATCTCGGTAAAA 60.678 50.000 4.20 0.00 42.30 1.52
3175 3717 3.598299 CCCGTGGTAATCTCGGTAAAAA 58.402 45.455 4.20 0.00 42.30 1.94
3176 3718 3.619929 CCCGTGGTAATCTCGGTAAAAAG 59.380 47.826 4.20 0.00 42.30 2.27
3177 3719 3.619929 CCGTGGTAATCTCGGTAAAAAGG 59.380 47.826 0.00 0.00 39.51 3.11
3178 3720 4.248058 CGTGGTAATCTCGGTAAAAAGGT 58.752 43.478 0.00 0.00 0.00 3.50
3179 3721 5.410067 CGTGGTAATCTCGGTAAAAAGGTA 58.590 41.667 0.00 0.00 0.00 3.08
3180 3722 5.868801 CGTGGTAATCTCGGTAAAAAGGTAA 59.131 40.000 0.00 0.00 0.00 2.85
3183 3725 8.567104 GTGGTAATCTCGGTAAAAAGGTAAAAA 58.433 33.333 0.00 0.00 0.00 1.94
3227 3769 8.413309 AAAATTGAATGGATCATATGTCGGAT 57.587 30.769 1.90 0.00 38.03 4.18
3228 3770 7.621428 AATTGAATGGATCATATGTCGGATC 57.379 36.000 1.90 0.00 38.03 3.36
3229 3771 4.747810 TGAATGGATCATATGTCGGATCG 58.252 43.478 1.90 0.00 40.61 3.69
3230 3772 4.220602 TGAATGGATCATATGTCGGATCGT 59.779 41.667 1.90 0.00 40.61 3.73
3231 3773 5.417580 TGAATGGATCATATGTCGGATCGTA 59.582 40.000 1.90 0.00 40.61 3.43
3232 3774 6.096846 TGAATGGATCATATGTCGGATCGTAT 59.903 38.462 1.90 0.00 40.61 3.06
3234 3776 6.280855 TGGATCATATGTCGGATCGTATTT 57.719 37.500 1.90 0.00 40.61 1.40
3236 3778 6.811665 TGGATCATATGTCGGATCGTATTTTC 59.188 38.462 1.90 0.00 40.61 2.29
3237 3779 7.036220 GGATCATATGTCGGATCGTATTTTCT 58.964 38.462 1.90 0.00 40.61 2.52
3238 3780 7.545965 GGATCATATGTCGGATCGTATTTTCTT 59.454 37.037 1.90 0.00 40.61 2.52
3239 3781 7.869016 TCATATGTCGGATCGTATTTTCTTC 57.131 36.000 1.90 0.00 0.00 2.87
3240 3782 6.581166 TCATATGTCGGATCGTATTTTCTTCG 59.419 38.462 1.90 0.00 0.00 3.79
3242 3784 2.218075 GTCGGATCGTATTTTCTTCGCC 59.782 50.000 0.00 0.00 0.00 5.54
3243 3785 2.159212 TCGGATCGTATTTTCTTCGCCA 60.159 45.455 0.00 0.00 0.00 5.69
3244 3786 2.800544 CGGATCGTATTTTCTTCGCCAT 59.199 45.455 0.00 0.00 0.00 4.40
3245 3787 3.362986 CGGATCGTATTTTCTTCGCCATG 60.363 47.826 0.00 0.00 0.00 3.66
3247 3789 3.254470 TCGTATTTTCTTCGCCATGGA 57.746 42.857 18.40 0.00 0.00 3.41
3248 3790 3.804036 TCGTATTTTCTTCGCCATGGAT 58.196 40.909 18.40 0.00 0.00 3.41
3249 3791 4.951254 TCGTATTTTCTTCGCCATGGATA 58.049 39.130 18.40 0.00 0.00 2.59
3250 3792 4.748102 TCGTATTTTCTTCGCCATGGATAC 59.252 41.667 18.40 10.62 0.00 2.24
3251 3793 4.084013 CGTATTTTCTTCGCCATGGATACC 60.084 45.833 18.40 0.00 0.00 2.73
3252 3794 3.358111 TTTTCTTCGCCATGGATACCA 57.642 42.857 18.40 0.00 38.19 3.25
3253 3795 2.325583 TTCTTCGCCATGGATACCAC 57.674 50.000 18.40 0.00 35.80 4.16
3254 3796 1.199615 TCTTCGCCATGGATACCACA 58.800 50.000 18.40 0.00 35.80 4.17
3255 3797 1.138859 TCTTCGCCATGGATACCACAG 59.861 52.381 18.40 0.49 35.80 3.66
3256 3798 0.180171 TTCGCCATGGATACCACAGG 59.820 55.000 18.40 0.00 35.80 4.00
3257 3799 4.164258 GCCATGGATACCACAGGC 57.836 61.111 18.40 16.32 45.92 4.85
3260 3802 0.466189 CCATGGATACCACAGGCACC 60.466 60.000 5.56 0.00 35.80 5.01
3261 3803 0.466189 CATGGATACCACAGGCACCC 60.466 60.000 0.00 0.00 35.80 4.61
3262 3804 0.918799 ATGGATACCACAGGCACCCA 60.919 55.000 0.00 0.00 35.80 4.51
3264 3806 0.258774 GGATACCACAGGCACCCATT 59.741 55.000 0.00 0.00 0.00 3.16
3265 3807 1.680338 GATACCACAGGCACCCATTC 58.320 55.000 0.00 0.00 0.00 2.67
3266 3808 0.258774 ATACCACAGGCACCCATTCC 59.741 55.000 0.00 0.00 0.00 3.01
3267 3809 1.858739 TACCACAGGCACCCATTCCC 61.859 60.000 0.00 0.00 0.00 3.97
3269 3811 1.570857 CCACAGGCACCCATTCCCTA 61.571 60.000 0.00 0.00 0.00 3.53
3270 3812 0.107017 CACAGGCACCCATTCCCTAG 60.107 60.000 0.00 0.00 0.00 3.02
3271 3813 0.253160 ACAGGCACCCATTCCCTAGA 60.253 55.000 0.00 0.00 0.00 2.43
3272 3814 0.918983 CAGGCACCCATTCCCTAGAA 59.081 55.000 0.00 0.00 36.15 2.10
3275 3817 2.100197 GGCACCCATTCCCTAGAAAAC 58.900 52.381 0.00 0.00 35.09 2.43
3276 3818 2.291605 GGCACCCATTCCCTAGAAAACT 60.292 50.000 0.00 0.00 35.09 2.66
3277 3819 3.431415 GCACCCATTCCCTAGAAAACTT 58.569 45.455 0.00 0.00 35.09 2.66
3278 3820 4.569015 GGCACCCATTCCCTAGAAAACTTA 60.569 45.833 0.00 0.00 35.09 2.24
3280 3822 5.656859 GCACCCATTCCCTAGAAAACTTAAT 59.343 40.000 0.00 0.00 35.09 1.40
3281 3823 6.831868 GCACCCATTCCCTAGAAAACTTAATA 59.168 38.462 0.00 0.00 35.09 0.98
3282 3824 7.201794 GCACCCATTCCCTAGAAAACTTAATAC 60.202 40.741 0.00 0.00 35.09 1.89
3284 3826 8.053355 ACCCATTCCCTAGAAAACTTAATACAG 58.947 37.037 0.00 0.00 35.09 2.74
3285 3827 7.502561 CCCATTCCCTAGAAAACTTAATACAGG 59.497 40.741 0.00 0.00 35.09 4.00
3286 3828 8.053355 CCATTCCCTAGAAAACTTAATACAGGT 58.947 37.037 0.00 0.00 35.09 4.00
3288 3830 7.563724 TCCCTAGAAAACTTAATACAGGTGT 57.436 36.000 0.00 0.00 0.00 4.16
3289 3831 8.669055 TCCCTAGAAAACTTAATACAGGTGTA 57.331 34.615 0.00 0.00 34.67 2.90
3290 3832 8.534496 TCCCTAGAAAACTTAATACAGGTGTAC 58.466 37.037 0.00 0.00 32.72 2.90
3292 3834 9.715121 CCTAGAAAACTTAATACAGGTGTACAA 57.285 33.333 0.00 0.00 32.72 2.41
3294 3836 8.080083 AGAAAACTTAATACAGGTGTACAACG 57.920 34.615 4.99 3.21 32.72 4.10
3295 3837 6.790285 AAACTTAATACAGGTGTACAACGG 57.210 37.500 9.67 9.67 32.72 4.44
3297 3839 2.103537 AATACAGGTGTACAACGGGC 57.896 50.000 15.65 0.00 32.72 6.13
3299 3841 0.033781 TACAGGTGTACAACGGGCAC 59.966 55.000 15.65 0.00 0.00 5.01
3314 3856 1.692411 GGCACCCAGGTTTGATATCC 58.308 55.000 0.00 0.00 0.00 2.59
3315 3857 1.692411 GCACCCAGGTTTGATATCCC 58.308 55.000 0.00 0.00 0.00 3.85
3316 3858 1.064017 GCACCCAGGTTTGATATCCCA 60.064 52.381 0.00 0.00 0.00 4.37
3317 3859 2.622977 GCACCCAGGTTTGATATCCCAA 60.623 50.000 0.00 0.00 0.00 4.12
3318 3860 3.707316 CACCCAGGTTTGATATCCCAAA 58.293 45.455 0.00 0.00 34.03 3.28
3319 3861 4.093011 CACCCAGGTTTGATATCCCAAAA 58.907 43.478 0.00 0.00 37.72 2.44
3320 3862 4.716287 CACCCAGGTTTGATATCCCAAAAT 59.284 41.667 0.00 0.00 37.72 1.82
3321 3863 5.189539 CACCCAGGTTTGATATCCCAAAATT 59.810 40.000 0.00 0.00 37.72 1.82
3322 3864 5.790096 ACCCAGGTTTGATATCCCAAAATTT 59.210 36.000 0.00 0.00 37.72 1.82
3323 3865 6.962902 ACCCAGGTTTGATATCCCAAAATTTA 59.037 34.615 0.00 0.00 37.72 1.40
3324 3866 7.093068 ACCCAGGTTTGATATCCCAAAATTTAC 60.093 37.037 0.00 0.00 37.72 2.01
3325 3867 7.125659 CCCAGGTTTGATATCCCAAAATTTACT 59.874 37.037 0.00 0.00 37.72 2.24
3326 3868 8.539544 CCAGGTTTGATATCCCAAAATTTACTT 58.460 33.333 0.00 0.00 37.72 2.24
3327 3869 9.586435 CAGGTTTGATATCCCAAAATTTACTTC 57.414 33.333 0.00 0.00 37.72 3.01
3328 3870 9.547279 AGGTTTGATATCCCAAAATTTACTTCT 57.453 29.630 0.00 0.00 37.72 2.85
3383 3925 5.050490 GCTATATTCATATAGGGGTGTGCG 58.950 45.833 13.46 0.00 41.48 5.34
3385 3927 0.107831 TTCATATAGGGGTGTGCGGC 59.892 55.000 0.00 0.00 0.00 6.53
3394 3936 2.740055 GTGTGCGGCACCTGAGAG 60.740 66.667 28.57 0.00 42.10 3.20
3395 3937 4.687215 TGTGCGGCACCTGAGAGC 62.687 66.667 28.57 3.31 32.73 4.09
3396 3938 4.385405 GTGCGGCACCTGAGAGCT 62.385 66.667 22.19 0.00 0.00 4.09
3397 3939 4.383861 TGCGGCACCTGAGAGCTG 62.384 66.667 0.00 1.99 38.83 4.24
3401 3943 1.378250 GGCACCTGAGAGCTGCAAT 60.378 57.895 1.02 0.00 32.20 3.56
3404 3946 0.958876 CACCTGAGAGCTGCAATGCA 60.959 55.000 7.99 7.99 36.92 3.96
3407 3949 1.476891 CCTGAGAGCTGCAATGCATTT 59.523 47.619 8.91 0.00 38.13 2.32
3408 3950 2.094182 CCTGAGAGCTGCAATGCATTTT 60.094 45.455 8.91 0.00 38.13 1.82
3409 3951 3.179830 CTGAGAGCTGCAATGCATTTTC 58.820 45.455 8.91 7.00 38.13 2.29
3411 3953 1.135199 AGAGCTGCAATGCATTTTCCG 60.135 47.619 8.91 0.00 38.13 4.30
3412 3954 0.604578 AGCTGCAATGCATTTTCCGT 59.395 45.000 8.91 0.00 38.13 4.69
3416 3991 3.243643 GCTGCAATGCATTTTCCGTTATC 59.756 43.478 8.91 0.00 38.13 1.75
3420 3995 6.033341 TGCAATGCATTTTCCGTTATCTAAC 58.967 36.000 9.83 0.00 31.71 2.34
3422 3997 6.751888 GCAATGCATTTTCCGTTATCTAACTT 59.248 34.615 9.83 0.00 34.12 2.66
3431 4006 9.504708 TTTTCCGTTATCTAACTTCCAACATTA 57.495 29.630 0.00 0.00 34.12 1.90
3456 4031 5.936686 TTGCATCAGCTTAGCAAGATATC 57.063 39.130 7.07 0.00 42.71 1.63
3460 4035 5.469421 GCATCAGCTTAGCAAGATATCAAGT 59.531 40.000 7.07 0.00 37.91 3.16
3461 4036 6.017275 GCATCAGCTTAGCAAGATATCAAGTT 60.017 38.462 7.07 0.00 37.91 2.66
3462 4037 7.574496 CATCAGCTTAGCAAGATATCAAGTTC 58.426 38.462 7.07 0.00 0.00 3.01
3480 4072 1.338107 TCGCTCCCAAAGAAGAGTGA 58.662 50.000 0.00 0.00 44.99 3.41
3484 4076 3.503748 CGCTCCCAAAGAAGAGTGAAATT 59.496 43.478 0.00 0.00 42.05 1.82
3541 4133 3.820557 TCAGCTTAGCAAGGTTTCAAGT 58.179 40.909 7.07 0.00 37.06 3.16
3543 4135 2.887152 AGCTTAGCAAGGTTTCAAGTGG 59.113 45.455 7.07 0.00 35.27 4.00
3556 4150 1.702401 TCAAGTGGTACATTCAGGGCA 59.298 47.619 0.00 0.00 44.52 5.36
3578 4172 5.467705 CAAAGCTCCCAAAGAAGAATGAAG 58.532 41.667 0.00 0.00 0.00 3.02
3602 4198 8.404107 AGTAGTACCAAAACTAATGTGCATTT 57.596 30.769 2.56 0.00 33.85 2.32
3603 4199 8.512138 AGTAGTACCAAAACTAATGTGCATTTC 58.488 33.333 2.56 0.00 33.85 2.17
3607 4203 6.815089 ACCAAAACTAATGTGCATTTCTCAA 58.185 32.000 2.56 0.00 32.50 3.02
3659 4259 8.153221 TCCAGTTTCCCTAGTTAATACATTGA 57.847 34.615 0.00 0.00 0.00 2.57
3681 4281 2.794910 CAGCCCTTCGAATATACACACG 59.205 50.000 0.00 0.00 0.00 4.49
3682 4282 1.525619 GCCCTTCGAATATACACACGC 59.474 52.381 0.00 0.00 0.00 5.34
3694 4294 2.683933 ACACGCGATCCCCTCCTT 60.684 61.111 15.93 0.00 0.00 3.36
3718 4318 4.613622 GCAGCGATTCAGCTTGTAGAAAAA 60.614 41.667 0.00 0.00 46.80 1.94
3719 4319 4.848299 CAGCGATTCAGCTTGTAGAAAAAC 59.152 41.667 0.00 0.00 46.80 2.43
3730 4332 6.092259 AGCTTGTAGAAAAACGATGATGGTAC 59.908 38.462 0.00 0.00 0.00 3.34
3733 4335 5.803461 TGTAGAAAAACGATGATGGTACGAG 59.197 40.000 0.00 0.00 0.00 4.18
3758 4360 9.512588 AGATTAGATATTGTAAGCCATCAAAGG 57.487 33.333 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.889638 AGTCGGAGCAAGAGACGTCA 60.890 55.000 19.50 0.00 39.65 4.35
28 29 1.272769 ACAAGTTGAGGACCGCTACTC 59.727 52.381 12.25 0.00 0.00 2.59
34 35 1.341531 AGACAGACAAGTTGAGGACCG 59.658 52.381 10.54 0.00 0.00 4.79
57 58 0.179094 TCCATAATGACGGCGTCCAC 60.179 55.000 34.28 13.87 0.00 4.02
61 62 2.224281 ACATGATCCATAATGACGGCGT 60.224 45.455 14.65 14.65 0.00 5.68
66 67 7.461918 CGATGATGAACATGATCCATAATGAC 58.538 38.462 0.00 0.00 39.56 3.06
67 68 6.093082 GCGATGATGAACATGATCCATAATGA 59.907 38.462 0.00 0.00 39.56 2.57
69 70 5.356190 GGCGATGATGAACATGATCCATAAT 59.644 40.000 0.00 0.00 39.56 1.28
72 73 3.079578 GGCGATGATGAACATGATCCAT 58.920 45.455 0.00 0.00 39.56 3.41
95 96 3.408634 GAATTCCTTCCCAAACTCGACA 58.591 45.455 0.00 0.00 0.00 4.35
96 97 2.747989 GGAATTCCTTCCCAAACTCGAC 59.252 50.000 17.73 0.00 44.56 4.20
112 127 3.790789 GCGTTGTCACTTTTCACGGAATT 60.791 43.478 0.00 0.00 0.00 2.17
115 130 0.653636 GCGTTGTCACTTTTCACGGA 59.346 50.000 0.00 0.00 0.00 4.69
124 139 0.819259 ACTGGCAATGCGTTGTCACT 60.819 50.000 21.68 10.52 44.50 3.41
129 144 1.210931 CTGGACTGGCAATGCGTTG 59.789 57.895 14.54 14.54 38.39 4.10
130 145 1.973281 CCTGGACTGGCAATGCGTT 60.973 57.895 0.00 0.00 0.00 4.84
131 146 2.360350 CCTGGACTGGCAATGCGT 60.360 61.111 0.00 0.00 0.00 5.24
136 151 0.842030 ATGGAGACCTGGACTGGCAA 60.842 55.000 2.75 0.00 0.00 4.52
143 158 1.685765 CCGTCCATGGAGACCTGGA 60.686 63.158 16.81 0.00 39.23 3.86
145 160 0.613260 TTTCCGTCCATGGAGACCTG 59.387 55.000 16.81 0.00 39.72 4.00
149 164 1.475280 CGTAGTTTCCGTCCATGGAGA 59.525 52.381 16.81 7.21 39.72 3.71
166 181 1.131883 GCAAACGCTCCTCTAGTCGTA 59.868 52.381 0.00 0.00 37.10 3.43
172 187 0.170561 GAGTCGCAAACGCTCCTCTA 59.829 55.000 0.00 0.00 39.84 2.43
181 196 2.096481 TTGTTCGCCGAGTCGCAAAC 62.096 55.000 7.12 10.91 0.00 2.93
184 199 2.132517 TACTTGTTCGCCGAGTCGCA 62.133 55.000 7.12 0.00 38.76 5.10
185 200 1.403972 CTACTTGTTCGCCGAGTCGC 61.404 60.000 7.12 1.74 38.76 5.19
187 202 1.615502 GACTACTTGTTCGCCGAGTC 58.384 55.000 0.00 0.00 38.76 3.36
194 209 3.181774 CCTCAACAACGACTACTTGTTCG 59.818 47.826 0.00 0.00 39.34 3.95
207 222 3.059188 CGTACACCATCAACCTCAACAAC 60.059 47.826 0.00 0.00 0.00 3.32
211 226 1.695242 ACCGTACACCATCAACCTCAA 59.305 47.619 0.00 0.00 0.00 3.02
218 233 1.261938 CCCTCCACCGTACACCATCA 61.262 60.000 0.00 0.00 0.00 3.07
229 244 4.410400 CTTCGGCCACCCTCCACC 62.410 72.222 2.24 0.00 0.00 4.61
230 245 4.410400 CCTTCGGCCACCCTCCAC 62.410 72.222 2.24 0.00 0.00 4.02
231 246 4.974438 ACCTTCGGCCACCCTCCA 62.974 66.667 2.24 0.00 0.00 3.86
234 249 4.974438 TCCACCTTCGGCCACCCT 62.974 66.667 2.24 0.00 0.00 4.34
239 254 3.254024 TTCAGCTCCACCTTCGGCC 62.254 63.158 0.00 0.00 0.00 6.13
243 258 2.224314 CGTTTTCTTCAGCTCCACCTTC 59.776 50.000 0.00 0.00 0.00 3.46
247 262 0.238553 GCCGTTTTCTTCAGCTCCAC 59.761 55.000 0.00 0.00 0.00 4.02
248 263 1.227999 CGCCGTTTTCTTCAGCTCCA 61.228 55.000 0.00 0.00 0.00 3.86
253 268 1.136336 GCACTACGCCGTTTTCTTCAG 60.136 52.381 0.00 0.00 32.94 3.02
262 277 1.063649 CGATGTAGCACTACGCCGT 59.936 57.895 0.00 0.00 44.04 5.68
268 283 4.625311 CACACAACAATCGATGTAGCACTA 59.375 41.667 0.00 0.00 42.99 2.74
278 293 0.665835 GCCCAACACACAACAATCGA 59.334 50.000 0.00 0.00 0.00 3.59
293 308 1.835267 ACACGGTACAGTCAGCCCA 60.835 57.895 0.00 0.00 0.00 5.36
306 321 1.153901 CTACTACGCCACCACACGG 60.154 63.158 0.00 0.00 38.77 4.94
307 322 0.804364 TACTACTACGCCACCACACG 59.196 55.000 0.00 0.00 0.00 4.49
309 324 2.424601 GTCATACTACTACGCCACCACA 59.575 50.000 0.00 0.00 0.00 4.17
311 326 1.672363 CGTCATACTACTACGCCACCA 59.328 52.381 0.00 0.00 0.00 4.17
327 342 1.369692 CACCCAGTACAAGGCGTCA 59.630 57.895 0.00 0.00 0.00 4.35
330 345 2.046314 CCCACCCAGTACAAGGCG 60.046 66.667 0.00 0.00 0.00 5.52
369 384 1.227556 GACTGCCGTGTTGGTGACT 60.228 57.895 0.00 0.00 41.21 3.41
371 386 1.116536 TAGGACTGCCGTGTTGGTGA 61.117 55.000 0.00 0.00 41.21 4.02
384 399 3.713764 CTCCAATTCCTCCACATAGGACT 59.286 47.826 0.00 0.00 45.49 3.85
411 426 0.464373 CACACATGGCCGCTTAGGAT 60.464 55.000 0.00 0.00 45.00 3.24
463 478 2.769617 CGTCAACGCTACGCAAGG 59.230 61.111 0.00 0.00 46.39 3.61
496 511 2.296471 TCTTGTCAGACCGGAAGAACTC 59.704 50.000 9.46 0.00 0.00 3.01
510 525 2.095212 CACGAGATTCGAGGTCTTGTCA 60.095 50.000 15.92 0.00 43.74 3.58
514 529 2.160205 TGTCACGAGATTCGAGGTCTT 58.840 47.619 5.38 0.00 43.74 3.01
522 537 1.154205 CCGCCCATGTCACGAGATTC 61.154 60.000 0.00 0.00 0.00 2.52
563 578 1.070038 GCCAATGTCCGCACAATTTG 58.930 50.000 0.00 0.00 35.64 2.32
570 585 1.112315 AAACCAAGCCAATGTCCGCA 61.112 50.000 0.00 0.00 0.00 5.69
579 594 1.764054 CCCACCCAAAACCAAGCCA 60.764 57.895 0.00 0.00 0.00 4.75
604 619 1.327303 GCCACATCAAACCCTGACAA 58.673 50.000 0.00 0.00 36.69 3.18
618 633 3.075884 GGGAGTTTATACGTTTGCCACA 58.924 45.455 0.00 0.00 0.00 4.17
624 639 4.492494 AATCGGGGGAGTTTATACGTTT 57.508 40.909 0.00 0.00 0.00 3.60
649 664 1.571919 CGAAATCCCACGGTCTGATC 58.428 55.000 0.00 0.00 0.00 2.92
650 665 0.178068 CCGAAATCCCACGGTCTGAT 59.822 55.000 0.00 0.00 43.53 2.90
682 1021 0.706433 ATCACCAAATCAGGCTGGGT 59.294 50.000 15.73 11.04 37.00 4.51
709 1048 1.748493 ACACACGCAAATGTTTGGACT 59.252 42.857 7.51 0.00 38.57 3.85
724 1063 1.260561 ACGCGAGTCATCAAAACACAC 59.739 47.619 15.93 0.00 44.19 3.82
725 1064 1.577468 ACGCGAGTCATCAAAACACA 58.423 45.000 15.93 0.00 44.19 3.72
739 1078 0.248012 TTAGGGCATCTTCAACGCGA 59.752 50.000 15.93 0.00 0.00 5.87
747 1086 1.834188 CAAACGGGTTAGGGCATCTT 58.166 50.000 0.00 0.00 0.00 2.40
852 1203 1.455383 CCTTTTTGCTGAGGTGGCGT 61.455 55.000 0.00 0.00 0.00 5.68
873 1224 1.076332 GACCGCGTGTCTTATGCTTT 58.924 50.000 17.12 0.00 41.03 3.51
892 1243 2.896801 GCTTGGACACAGCACACGG 61.897 63.158 0.00 0.00 0.00 4.94
921 1272 3.295093 CCTTGAGGATAGACTGAGAGCA 58.705 50.000 0.00 0.00 37.39 4.26
922 1273 2.627699 CCCTTGAGGATAGACTGAGAGC 59.372 54.545 0.00 0.00 38.24 4.09
929 1282 3.389656 CCTTCTTCCCCTTGAGGATAGAC 59.610 52.174 0.00 0.00 38.24 2.59
1388 1758 3.145551 CAGCAGCATGAAGGGGGC 61.146 66.667 0.00 0.00 39.69 5.80
1398 1785 1.202463 GCTACTTAGCTAGCAGCAGCA 60.202 52.381 18.83 0.00 45.56 4.41
1418 1805 0.392060 TAGCAGCAGCATGTCCACTG 60.392 55.000 3.17 0.00 45.49 3.66
1419 1806 0.107800 CTAGCAGCAGCATGTCCACT 60.108 55.000 3.17 0.00 45.49 4.00
1420 1807 1.712977 GCTAGCAGCAGCATGTCCAC 61.713 60.000 10.63 0.00 45.49 4.02
1421 1808 1.450848 GCTAGCAGCAGCATGTCCA 60.451 57.895 10.63 0.00 45.49 4.02
1422 1809 0.105593 TAGCTAGCAGCAGCATGTCC 59.894 55.000 18.83 0.00 45.56 4.02
1423 1810 1.865970 CTTAGCTAGCAGCAGCATGTC 59.134 52.381 18.83 0.00 45.56 3.06
1424 1811 1.209019 ACTTAGCTAGCAGCAGCATGT 59.791 47.619 18.83 9.95 45.56 3.21
1425 1812 1.950828 ACTTAGCTAGCAGCAGCATG 58.049 50.000 18.83 9.48 45.56 4.06
1426 1813 2.547642 GCTACTTAGCTAGCAGCAGCAT 60.548 50.000 18.83 0.00 45.56 3.79
1427 1814 1.202463 GCTACTTAGCTAGCAGCAGCA 60.202 52.381 18.83 0.00 45.56 4.41
1428 1815 1.202463 TGCTACTTAGCTAGCAGCAGC 60.202 52.381 19.50 18.04 46.08 5.25
1429 1816 2.879002 TGCTACTTAGCTAGCAGCAG 57.121 50.000 19.50 12.98 46.08 4.24
1439 1826 4.158764 AGCTTACTGTCCACTGCTACTTAG 59.841 45.833 0.00 0.00 0.00 2.18
1440 1827 4.087182 AGCTTACTGTCCACTGCTACTTA 58.913 43.478 0.00 0.00 0.00 2.24
1441 1828 2.900546 AGCTTACTGTCCACTGCTACTT 59.099 45.455 0.00 0.00 0.00 2.24
1446 1833 2.003301 GCTTAGCTTACTGTCCACTGC 58.997 52.381 0.00 0.00 0.00 4.40
1451 1838 3.619038 GTGACATGCTTAGCTTACTGTCC 59.381 47.826 18.86 11.38 33.72 4.02
1459 1846 2.414994 ATGCTGTGACATGCTTAGCT 57.585 45.000 5.60 0.00 35.50 3.32
1462 1849 5.220835 CGGATAAAATGCTGTGACATGCTTA 60.221 40.000 8.13 1.18 0.00 3.09
1469 1856 3.251004 GGATCCGGATAAAATGCTGTGAC 59.749 47.826 19.15 0.00 0.00 3.67
1485 1872 0.981183 TAATTCCCCATCCGGATCCG 59.019 55.000 27.65 27.65 39.44 4.18
1500 1887 7.672983 CATAAGTGCAATCCCGTCTATAATT 57.327 36.000 0.00 0.00 0.00 1.40
1518 1905 5.989477 TGTACTTGCTCTATTGGCATAAGT 58.011 37.500 0.00 0.00 39.54 2.24
1520 1907 5.239306 GCATGTACTTGCTCTATTGGCATAA 59.761 40.000 22.71 0.00 39.54 1.90
1522 1909 3.567164 GCATGTACTTGCTCTATTGGCAT 59.433 43.478 22.71 0.00 39.54 4.40
1524 1911 2.945008 TGCATGTACTTGCTCTATTGGC 59.055 45.455 27.83 5.40 43.18 4.52
1526 1913 6.694411 GGAAAATGCATGTACTTGCTCTATTG 59.306 38.462 27.83 0.00 43.18 1.90
1534 1921 5.183713 TCCTCAAGGAAAATGCATGTACTTG 59.816 40.000 21.84 21.84 42.18 3.16
1550 1937 5.529060 GCAACCATTACTAGAATCCTCAAGG 59.471 44.000 0.00 0.00 0.00 3.61
1564 1951 4.285291 GCATCGCGCAACCATTAC 57.715 55.556 8.75 0.00 41.79 1.89
1581 1968 1.059369 CATCAAAAGGCGTCGCTCG 59.941 57.895 18.11 1.56 43.12 5.03
1583 1970 1.626654 CGACATCAAAAGGCGTCGCT 61.627 55.000 18.11 0.00 43.88 4.93
1584 1971 1.225745 CGACATCAAAAGGCGTCGC 60.226 57.895 9.22 9.22 43.88 5.19
1586 1973 2.159627 ACATTCGACATCAAAAGGCGTC 59.840 45.455 0.00 0.00 0.00 5.19
1587 1974 2.151202 ACATTCGACATCAAAAGGCGT 58.849 42.857 0.00 0.00 0.00 5.68
1588 1975 2.476185 GGACATTCGACATCAAAAGGCG 60.476 50.000 0.00 0.00 0.00 5.52
1591 1978 3.926527 TCGAGGACATTCGACATCAAAAG 59.073 43.478 0.00 0.00 44.00 2.27
1592 1979 3.920446 TCGAGGACATTCGACATCAAAA 58.080 40.909 0.00 0.00 44.00 2.44
1601 1988 3.578688 TCATATGCATCGAGGACATTCG 58.421 45.455 0.19 0.00 41.79 3.34
1602 1989 4.331992 CCATCATATGCATCGAGGACATTC 59.668 45.833 0.19 0.00 0.00 2.67
1603 1990 4.019950 TCCATCATATGCATCGAGGACATT 60.020 41.667 0.19 0.00 0.00 2.71
1604 1991 3.516700 TCCATCATATGCATCGAGGACAT 59.483 43.478 0.19 6.74 0.00 3.06
1606 1993 3.599730 TCCATCATATGCATCGAGGAC 57.400 47.619 0.19 0.00 0.00 3.85
1607 1994 4.133013 CATCCATCATATGCATCGAGGA 57.867 45.455 0.19 10.38 0.00 3.71
1615 2002 1.397343 CTGCTCGCATCCATCATATGC 59.603 52.381 0.00 0.00 45.03 3.14
1616 2003 1.397343 GCTGCTCGCATCCATCATATG 59.603 52.381 0.00 0.00 38.92 1.78
1619 2006 1.959738 CGCTGCTCGCATCCATCAT 60.960 57.895 0.00 0.00 39.08 2.45
1620 2007 2.586914 CGCTGCTCGCATCCATCA 60.587 61.111 0.00 0.00 39.08 3.07
1639 2026 2.783316 GCTAACGTGCGATTTCCGAAAG 60.783 50.000 0.00 0.00 41.76 2.62
1640 2027 1.127213 GCTAACGTGCGATTTCCGAAA 59.873 47.619 0.00 0.00 41.76 3.46
1641 2028 0.717224 GCTAACGTGCGATTTCCGAA 59.283 50.000 0.00 0.00 41.76 4.30
1642 2029 0.108992 AGCTAACGTGCGATTTCCGA 60.109 50.000 0.00 0.00 41.76 4.55
1643 2030 0.719465 AAGCTAACGTGCGATTTCCG 59.281 50.000 0.00 0.00 42.21 4.30
1644 2031 2.475685 GGAAAGCTAACGTGCGATTTCC 60.476 50.000 22.86 22.86 38.86 3.13
1645 2032 2.770532 GGAAAGCTAACGTGCGATTTC 58.229 47.619 15.58 15.58 38.13 2.17
1646 2033 1.127951 CGGAAAGCTAACGTGCGATTT 59.872 47.619 0.00 0.00 38.13 2.17
1647 2034 0.719465 CGGAAAGCTAACGTGCGATT 59.281 50.000 0.00 0.00 38.13 3.34
1648 2035 1.082117 CCGGAAAGCTAACGTGCGAT 61.082 55.000 0.00 0.00 38.13 4.58
1649 2036 1.735198 CCGGAAAGCTAACGTGCGA 60.735 57.895 0.00 0.00 38.13 5.10
1650 2037 1.562575 AACCGGAAAGCTAACGTGCG 61.563 55.000 9.46 0.00 38.13 5.34
1651 2038 0.165295 GAACCGGAAAGCTAACGTGC 59.835 55.000 9.46 0.00 0.00 5.34
1652 2039 1.459592 CTGAACCGGAAAGCTAACGTG 59.540 52.381 9.46 0.00 0.00 4.49
1653 2040 1.069668 ACTGAACCGGAAAGCTAACGT 59.930 47.619 9.46 0.00 0.00 3.99
1654 2041 1.792006 ACTGAACCGGAAAGCTAACG 58.208 50.000 9.46 0.00 0.00 3.18
1655 2042 2.350484 GCAACTGAACCGGAAAGCTAAC 60.350 50.000 9.46 0.00 0.00 2.34
1665 2055 1.790387 GCTAGCAGCAACTGAACCG 59.210 57.895 10.63 0.00 41.89 4.44
1678 2068 1.863267 ATCTCATCAAGCACGCTAGC 58.137 50.000 4.06 4.06 0.00 3.42
1679 2069 4.143158 GCATTATCTCATCAAGCACGCTAG 60.143 45.833 0.00 0.00 0.00 3.42
1680 2070 3.742882 GCATTATCTCATCAAGCACGCTA 59.257 43.478 0.00 0.00 0.00 4.26
1682 2072 2.547211 AGCATTATCTCATCAAGCACGC 59.453 45.455 0.00 0.00 0.00 5.34
1710 2101 1.876156 CCCTCTGCTTCAGTTTGTGTC 59.124 52.381 0.00 0.00 32.61 3.67
1712 2103 2.260844 TCCCTCTGCTTCAGTTTGTG 57.739 50.000 0.00 0.00 32.61 3.33
1717 2115 1.074405 TGCAAATCCCTCTGCTTCAGT 59.926 47.619 0.00 0.00 39.38 3.41
1719 2117 1.830279 CTGCAAATCCCTCTGCTTCA 58.170 50.000 0.00 0.00 39.38 3.02
1729 2148 7.798596 AGCACATATATATAGCTGCAAATCC 57.201 36.000 19.39 0.00 33.67 3.01
1743 2162 7.070447 CACCCATGGAGAGTATAGCACATATAT 59.930 40.741 15.22 0.00 0.00 0.86
1745 2164 5.188555 CACCCATGGAGAGTATAGCACATAT 59.811 44.000 15.22 0.00 0.00 1.78
1746 2165 4.528206 CACCCATGGAGAGTATAGCACATA 59.472 45.833 15.22 0.00 0.00 2.29
1747 2166 3.326006 CACCCATGGAGAGTATAGCACAT 59.674 47.826 15.22 0.00 0.00 3.21
1748 2167 2.700371 CACCCATGGAGAGTATAGCACA 59.300 50.000 15.22 0.00 0.00 4.57
1749 2168 2.700897 ACACCCATGGAGAGTATAGCAC 59.299 50.000 15.22 0.00 0.00 4.40
1750 2169 2.965831 GACACCCATGGAGAGTATAGCA 59.034 50.000 15.22 0.00 0.00 3.49
1751 2170 3.235200 AGACACCCATGGAGAGTATAGC 58.765 50.000 15.22 0.00 0.00 2.97
1752 2171 5.013547 CCTAGACACCCATGGAGAGTATAG 58.986 50.000 15.22 17.25 0.00 1.31
1753 2172 4.753217 GCCTAGACACCCATGGAGAGTATA 60.753 50.000 15.22 9.09 0.00 1.47
1754 2173 3.850752 CCTAGACACCCATGGAGAGTAT 58.149 50.000 15.22 8.37 0.00 2.12
1765 2184 0.178970 TCGGATAGGCCTAGACACCC 60.179 60.000 19.33 12.20 0.00 4.61
1769 2188 0.890090 ACGCTCGGATAGGCCTAGAC 60.890 60.000 19.33 14.14 31.16 2.59
1808 2227 0.610687 AGAATATGGGAGCCGCTAGC 59.389 55.000 4.06 4.06 44.25 3.42
1809 2228 1.205893 GGAGAATATGGGAGCCGCTAG 59.794 57.143 0.00 0.00 0.00 3.42
1813 2232 1.374758 GCGGAGAATATGGGAGCCG 60.375 63.158 0.00 0.00 41.51 5.52
1814 2233 0.321122 CTGCGGAGAATATGGGAGCC 60.321 60.000 0.00 0.00 0.00 4.70
1815 2234 0.952984 GCTGCGGAGAATATGGGAGC 60.953 60.000 8.65 0.00 36.72 4.70
1816 2235 0.668706 CGCTGCGGAGAATATGGGAG 60.669 60.000 15.40 0.00 0.00 4.30
1817 2236 1.112916 TCGCTGCGGAGAATATGGGA 61.113 55.000 23.03 0.00 0.00 4.37
1818 2237 0.249868 TTCGCTGCGGAGAATATGGG 60.250 55.000 23.03 0.00 0.00 4.00
1836 2255 1.945355 GCCCATGCAAAAATTCCGCTT 60.945 47.619 0.00 0.00 37.47 4.68
1837 2256 0.391528 GCCCATGCAAAAATTCCGCT 60.392 50.000 0.00 0.00 37.47 5.52
1838 2257 0.391528 AGCCCATGCAAAAATTCCGC 60.392 50.000 0.00 0.00 41.13 5.54
1839 2258 1.643880 GAGCCCATGCAAAAATTCCG 58.356 50.000 0.00 0.00 41.13 4.30
1840 2259 1.204467 TCGAGCCCATGCAAAAATTCC 59.796 47.619 0.00 0.00 41.13 3.01
1841 2260 2.652941 TCGAGCCCATGCAAAAATTC 57.347 45.000 0.00 0.00 41.13 2.17
1842 2261 2.896168 CATCGAGCCCATGCAAAAATT 58.104 42.857 0.00 0.00 41.13 1.82
1855 2343 2.024319 GCATACGGAGGCATCGAGC 61.024 63.158 0.00 0.00 44.65 5.03
1856 2344 1.363807 TGCATACGGAGGCATCGAG 59.636 57.895 0.99 0.00 37.47 4.04
1868 2356 5.819379 TCTTGAGAAATGGAGTGATGCATAC 59.181 40.000 0.00 0.00 0.00 2.39
1871 2359 4.259356 CTCTTGAGAAATGGAGTGATGCA 58.741 43.478 0.00 0.00 0.00 3.96
1881 2369 7.496920 TGCCATCTATAACACTCTTGAGAAATG 59.503 37.037 4.49 0.00 0.00 2.32
1882 2370 7.568349 TGCCATCTATAACACTCTTGAGAAAT 58.432 34.615 4.49 0.00 0.00 2.17
1906 2395 3.978687 ACTGTCTACTTGTCGAACCTTG 58.021 45.455 0.00 0.00 0.00 3.61
1951 2440 9.539825 CTTTGATGTGAGAGCTACTTTACATAT 57.460 33.333 12.44 0.00 37.08 1.78
1960 2449 5.126384 ACTCCTACTTTGATGTGAGAGCTAC 59.874 44.000 0.00 0.00 0.00 3.58
2029 2518 6.463360 GCCCAATTTGGAATTAGTTCAGAAA 58.537 36.000 17.24 0.00 40.96 2.52
2042 2535 0.903942 GCAAGATGGCCCAATTTGGA 59.096 50.000 17.24 0.00 40.96 3.53
2052 2545 2.531522 AAAACAGTTGGCAAGATGGC 57.468 45.000 14.77 0.00 44.03 4.40
2053 2546 4.582701 TGTAAAACAGTTGGCAAGATGG 57.417 40.909 14.77 2.42 0.00 3.51
2054 2547 6.925165 AGAAATGTAAAACAGTTGGCAAGATG 59.075 34.615 0.00 5.43 36.45 2.90
2055 2548 6.925165 CAGAAATGTAAAACAGTTGGCAAGAT 59.075 34.615 0.00 0.00 36.45 2.40
2056 2549 6.272318 CAGAAATGTAAAACAGTTGGCAAGA 58.728 36.000 0.00 0.00 36.45 3.02
2058 2551 4.808364 GCAGAAATGTAAAACAGTTGGCAA 59.192 37.500 0.00 0.00 36.45 4.52
2064 2557 5.835113 ACACTGCAGAAATGTAAAACAGT 57.165 34.783 23.35 0.00 37.37 3.55
2088 2582 1.741706 CAAGTAGCCACTTCATGCAGG 59.258 52.381 0.00 0.00 43.30 4.85
2089 2583 2.430465 ACAAGTAGCCACTTCATGCAG 58.570 47.619 0.00 0.00 43.30 4.41
2098 2592 2.749076 TGCATGATCAACAAGTAGCCAC 59.251 45.455 0.00 0.00 0.00 5.01
2100 2594 3.273434 TCTGCATGATCAACAAGTAGCC 58.727 45.455 0.00 0.00 31.87 3.93
2101 2595 4.730035 GCTTCTGCATGATCAACAAGTAGC 60.730 45.833 0.00 8.41 39.41 3.58
2103 2597 4.582869 AGCTTCTGCATGATCAACAAGTA 58.417 39.130 0.00 0.00 42.74 2.24
2104 2598 3.418995 AGCTTCTGCATGATCAACAAGT 58.581 40.909 0.00 0.00 42.74 3.16
2105 2599 4.166523 CAAGCTTCTGCATGATCAACAAG 58.833 43.478 0.00 0.00 39.96 3.16
2111 2643 1.202268 GGCACAAGCTTCTGCATGATC 60.202 52.381 25.18 6.59 39.96 2.92
2120 2652 0.040958 CGACAAGTGGCACAAGCTTC 60.041 55.000 21.41 7.46 44.16 3.86
2126 2658 1.436195 GCAGTTCGACAAGTGGCACA 61.436 55.000 21.41 0.00 33.95 4.57
2127 2659 1.160329 AGCAGTTCGACAAGTGGCAC 61.160 55.000 10.29 10.29 33.95 5.01
2138 2670 1.202568 CGTTCACTGCAGCAGTTCG 59.797 57.895 26.16 23.45 42.59 3.95
2141 2673 2.281070 CCCGTTCACTGCAGCAGT 60.281 61.111 23.11 23.11 46.51 4.40
2142 2674 2.031012 TCCCGTTCACTGCAGCAG 59.969 61.111 21.54 21.54 37.52 4.24
2155 2687 1.545582 AGGAATGCAATGTTTGTCCCG 59.454 47.619 0.00 0.00 0.00 5.14
2158 2690 4.241590 TGTCAGGAATGCAATGTTTGTC 57.758 40.909 0.00 0.00 0.00 3.18
2240 2772 1.921869 TTGCCTCCGGGGAATCTTCC 61.922 60.000 0.37 0.00 46.82 3.46
2388 2920 4.795970 ATCGACCGAAAGCACATAATTC 57.204 40.909 0.00 0.00 0.00 2.17
2404 2936 2.413837 ACACCAGCAGTTTGTATCGAC 58.586 47.619 0.00 0.00 0.00 4.20
2410 2942 1.673920 CCGTTTACACCAGCAGTTTGT 59.326 47.619 0.00 0.00 0.00 2.83
2424 2956 0.107116 AATGCCATACCGCCCGTTTA 60.107 50.000 0.00 0.00 0.00 2.01
2428 2960 3.286751 CCAATGCCATACCGCCCG 61.287 66.667 0.00 0.00 0.00 6.13
2469 3006 6.097554 TGAAATGAAAAGCCAAAAGGTGTAGA 59.902 34.615 0.00 0.00 0.00 2.59
2482 3019 9.798994 ATCATTAGAAGATGTGAAATGAAAAGC 57.201 29.630 0.00 0.00 39.31 3.51
2506 3043 5.355350 GGCCTGCATAGACATTGGTTATATC 59.645 44.000 0.00 0.00 0.00 1.63
2507 3044 5.256474 GGCCTGCATAGACATTGGTTATAT 58.744 41.667 0.00 0.00 0.00 0.86
2592 3129 1.209127 GTTGCCCATTTGGTCGACG 59.791 57.895 9.92 0.00 36.04 5.12
2709 3246 3.485877 GCCATTGCTTGTCGTAGAATGTC 60.486 47.826 0.00 0.00 33.43 3.06
2712 3249 2.679837 CTGCCATTGCTTGTCGTAGAAT 59.320 45.455 0.00 0.00 36.82 2.40
2779 3316 2.801342 GCCACCGCAAAATTCAACTTCA 60.801 45.455 0.00 0.00 34.03 3.02
2809 3346 3.054361 ACATAAGGAGGAAAGTCCGCATT 60.054 43.478 3.53 3.53 42.61 3.56
2811 3348 1.906574 ACATAAGGAGGAAAGTCCGCA 59.093 47.619 0.38 0.00 42.75 5.69
2903 3445 3.868077 GGCTCTAGCACATAACTGAGTTG 59.132 47.826 8.33 0.00 44.36 3.16
2936 3478 2.014128 GCTAAATAACCCGCAGAAGCA 58.986 47.619 0.00 0.00 42.27 3.91
2980 3522 4.379339 TTTTGACTTGTAACCCTGCAAC 57.621 40.909 0.00 0.00 0.00 4.17
2995 3537 6.151817 AGCTACAAATCCTCCAAGATTTTGAC 59.848 38.462 0.00 0.00 42.46 3.18
2996 3538 6.248433 AGCTACAAATCCTCCAAGATTTTGA 58.752 36.000 0.00 0.00 42.46 2.69
3007 3549 3.563390 GCATCCAAGAGCTACAAATCCTC 59.437 47.826 0.00 0.00 0.00 3.71
3008 3550 3.549794 GCATCCAAGAGCTACAAATCCT 58.450 45.455 0.00 0.00 0.00 3.24
3010 3552 3.065925 GTGGCATCCAAGAGCTACAAATC 59.934 47.826 0.00 0.00 41.24 2.17
3011 3553 3.019564 GTGGCATCCAAGAGCTACAAAT 58.980 45.455 0.00 0.00 41.24 2.32
3013 3555 1.350684 TGTGGCATCCAAGAGCTACAA 59.649 47.619 1.09 0.00 46.86 2.41
3016 3558 0.983467 TGTGTGGCATCCAAGAGCTA 59.017 50.000 0.00 0.00 34.18 3.32
3017 3559 0.607489 GTGTGTGGCATCCAAGAGCT 60.607 55.000 0.00 0.00 34.18 4.09
3018 3560 1.589716 GGTGTGTGGCATCCAAGAGC 61.590 60.000 0.00 0.00 34.18 4.09
3019 3561 2.559785 GGTGTGTGGCATCCAAGAG 58.440 57.895 0.00 0.00 34.18 2.85
3020 3562 4.819783 GGTGTGTGGCATCCAAGA 57.180 55.556 0.00 0.00 34.18 3.02
3025 3567 2.371841 TCATATAGGGGTGTGTGGCATC 59.628 50.000 0.00 0.00 0.00 3.91
3026 3568 2.417652 TCATATAGGGGTGTGTGGCAT 58.582 47.619 0.00 0.00 0.00 4.40
3027 3569 1.886422 TCATATAGGGGTGTGTGGCA 58.114 50.000 0.00 0.00 0.00 4.92
3028 3570 3.508845 ATTCATATAGGGGTGTGTGGC 57.491 47.619 0.00 0.00 0.00 5.01
3031 3573 6.730977 AGTGCTATATTCATATAGGGGTGTGT 59.269 38.462 13.46 0.00 41.48 3.72
3032 3574 7.187824 AGTGCTATATTCATATAGGGGTGTG 57.812 40.000 13.46 0.00 41.48 3.82
3033 3575 8.911018 TTAGTGCTATATTCATATAGGGGTGT 57.089 34.615 13.46 0.00 41.48 4.16
3035 3577 9.784376 TTCTTAGTGCTATATTCATATAGGGGT 57.216 33.333 13.46 0.00 41.48 4.95
3051 3593 9.914131 GAAATTTCCTGTTATTTTCTTAGTGCT 57.086 29.630 6.95 0.00 0.00 4.40
3052 3594 9.691362 TGAAATTTCCTGTTATTTTCTTAGTGC 57.309 29.630 15.48 0.00 0.00 4.40
3111 3653 0.817013 CATGGGTGTACAATGGGCAC 59.183 55.000 0.00 1.80 0.00 5.01
3112 3654 0.407528 ACATGGGTGTACAATGGGCA 59.592 50.000 10.09 0.00 36.63 5.36
3113 3655 1.476488 GAACATGGGTGTACAATGGGC 59.524 52.381 10.09 0.00 37.67 5.36
3114 3656 2.754552 CAGAACATGGGTGTACAATGGG 59.245 50.000 10.09 0.00 37.67 4.00
3115 3657 3.420893 ACAGAACATGGGTGTACAATGG 58.579 45.455 10.09 0.00 37.67 3.16
3116 3658 5.452078 AAACAGAACATGGGTGTACAATG 57.548 39.130 0.00 0.16 37.67 2.82
3117 3659 4.215399 CGAAACAGAACATGGGTGTACAAT 59.785 41.667 0.00 0.00 37.67 2.71
3118 3660 3.562141 CGAAACAGAACATGGGTGTACAA 59.438 43.478 0.00 0.00 37.67 2.41
3119 3661 3.135225 CGAAACAGAACATGGGTGTACA 58.865 45.455 0.00 0.00 37.67 2.90
3120 3662 3.059188 CACGAAACAGAACATGGGTGTAC 60.059 47.826 0.00 0.00 37.67 2.90
3121 3663 3.135225 CACGAAACAGAACATGGGTGTA 58.865 45.455 0.00 0.00 37.67 2.90
3122 3664 1.946768 CACGAAACAGAACATGGGTGT 59.053 47.619 0.00 0.00 41.28 4.16
3123 3665 2.217750 TCACGAAACAGAACATGGGTG 58.782 47.619 0.00 0.00 0.00 4.61
3124 3666 2.631160 TCACGAAACAGAACATGGGT 57.369 45.000 0.00 0.00 0.00 4.51
3125 3667 3.138304 TCTTCACGAAACAGAACATGGG 58.862 45.455 0.00 0.00 0.00 4.00
3126 3668 4.811555 TTCTTCACGAAACAGAACATGG 57.188 40.909 0.00 0.00 0.00 3.66
3127 3669 5.049474 TCCATTCTTCACGAAACAGAACATG 60.049 40.000 0.00 0.00 34.79 3.21
3128 3670 5.063204 TCCATTCTTCACGAAACAGAACAT 58.937 37.500 0.00 0.00 34.79 2.71
3129 3671 4.447290 TCCATTCTTCACGAAACAGAACA 58.553 39.130 0.00 0.00 34.79 3.18
3130 3672 5.385617 CATCCATTCTTCACGAAACAGAAC 58.614 41.667 0.00 0.00 34.79 3.01
3131 3673 4.083324 GCATCCATTCTTCACGAAACAGAA 60.083 41.667 0.00 0.00 34.79 3.02
3132 3674 3.436704 GCATCCATTCTTCACGAAACAGA 59.563 43.478 0.00 0.00 34.79 3.41
3133 3675 3.426695 GGCATCCATTCTTCACGAAACAG 60.427 47.826 0.00 0.00 34.79 3.16
3134 3676 2.487762 GGCATCCATTCTTCACGAAACA 59.512 45.455 0.00 0.00 34.79 2.83
3135 3677 2.159379 GGGCATCCATTCTTCACGAAAC 60.159 50.000 0.00 0.00 34.79 2.78
3136 3678 2.091541 GGGCATCCATTCTTCACGAAA 58.908 47.619 0.00 0.00 34.79 3.46
3137 3679 1.750193 GGGCATCCATTCTTCACGAA 58.250 50.000 0.00 0.00 35.78 3.85
3138 3680 0.461870 CGGGCATCCATTCTTCACGA 60.462 55.000 0.00 0.00 0.00 4.35
3139 3681 0.744414 ACGGGCATCCATTCTTCACG 60.744 55.000 0.00 0.00 0.00 4.35
3140 3682 0.734889 CACGGGCATCCATTCTTCAC 59.265 55.000 0.00 0.00 0.00 3.18
3141 3683 0.394216 CCACGGGCATCCATTCTTCA 60.394 55.000 0.00 0.00 0.00 3.02
3142 3684 0.394352 ACCACGGGCATCCATTCTTC 60.394 55.000 0.00 0.00 0.00 2.87
3143 3685 0.916086 TACCACGGGCATCCATTCTT 59.084 50.000 0.00 0.00 0.00 2.52
3144 3686 0.916086 TTACCACGGGCATCCATTCT 59.084 50.000 0.00 0.00 0.00 2.40
3145 3687 1.880027 GATTACCACGGGCATCCATTC 59.120 52.381 0.00 0.00 0.00 2.67
3146 3688 1.494721 AGATTACCACGGGCATCCATT 59.505 47.619 0.00 0.00 0.00 3.16
3147 3689 1.072331 GAGATTACCACGGGCATCCAT 59.928 52.381 0.00 0.00 0.00 3.41
3148 3690 0.468226 GAGATTACCACGGGCATCCA 59.532 55.000 0.00 0.00 0.00 3.41
3149 3691 0.600255 CGAGATTACCACGGGCATCC 60.600 60.000 0.00 0.00 0.00 3.51
3150 3692 0.600255 CCGAGATTACCACGGGCATC 60.600 60.000 0.00 0.00 42.48 3.91
3151 3693 1.445942 CCGAGATTACCACGGGCAT 59.554 57.895 0.00 0.00 42.48 4.40
3152 3694 2.897207 CCGAGATTACCACGGGCA 59.103 61.111 0.00 0.00 42.48 5.36
3156 3698 4.248058 ACCTTTTTACCGAGATTACCACG 58.752 43.478 0.00 0.00 0.00 4.94
3157 3699 7.671495 TTTACCTTTTTACCGAGATTACCAC 57.329 36.000 0.00 0.00 0.00 4.16
3158 3700 8.688747 TTTTTACCTTTTTACCGAGATTACCA 57.311 30.769 0.00 0.00 0.00 3.25
3201 3743 8.236585 TCCGACATATGATCCATTCAATTTTT 57.763 30.769 10.38 0.00 38.03 1.94
3202 3744 7.822161 TCCGACATATGATCCATTCAATTTT 57.178 32.000 10.38 0.00 38.03 1.82
3206 3748 5.170748 CGATCCGACATATGATCCATTCAA 58.829 41.667 10.38 0.00 38.03 2.69
3210 3752 6.471233 AATACGATCCGACATATGATCCAT 57.529 37.500 10.38 0.00 35.09 3.41
3213 3755 8.467402 AAGAAAATACGATCCGACATATGATC 57.533 34.615 10.38 0.83 35.19 2.92
3217 3759 5.345202 GCGAAGAAAATACGATCCGACATAT 59.655 40.000 0.00 0.00 0.00 1.78
3218 3760 4.678287 GCGAAGAAAATACGATCCGACATA 59.322 41.667 0.00 0.00 0.00 2.29
3219 3761 3.489785 GCGAAGAAAATACGATCCGACAT 59.510 43.478 0.00 0.00 0.00 3.06
3220 3762 2.855963 GCGAAGAAAATACGATCCGACA 59.144 45.455 0.00 0.00 0.00 4.35
3221 3763 2.218075 GGCGAAGAAAATACGATCCGAC 59.782 50.000 0.00 0.00 0.00 4.79
3223 3765 2.198406 TGGCGAAGAAAATACGATCCG 58.802 47.619 0.00 0.00 0.00 4.18
3224 3766 3.058914 CCATGGCGAAGAAAATACGATCC 60.059 47.826 0.00 0.00 0.00 3.36
3225 3767 3.807622 TCCATGGCGAAGAAAATACGATC 59.192 43.478 6.96 0.00 0.00 3.69
3227 3769 3.254470 TCCATGGCGAAGAAAATACGA 57.746 42.857 6.96 0.00 0.00 3.43
3228 3770 4.084013 GGTATCCATGGCGAAGAAAATACG 60.084 45.833 6.96 0.00 0.00 3.06
3229 3771 4.819630 TGGTATCCATGGCGAAGAAAATAC 59.180 41.667 6.96 7.11 0.00 1.89
3230 3772 4.819630 GTGGTATCCATGGCGAAGAAAATA 59.180 41.667 6.96 0.00 35.28 1.40
3231 3773 3.632145 GTGGTATCCATGGCGAAGAAAAT 59.368 43.478 6.96 0.00 35.28 1.82
3232 3774 3.013921 GTGGTATCCATGGCGAAGAAAA 58.986 45.455 6.96 0.00 35.28 2.29
3234 3776 1.557371 TGTGGTATCCATGGCGAAGAA 59.443 47.619 6.96 0.00 35.28 2.52
3236 3778 1.586422 CTGTGGTATCCATGGCGAAG 58.414 55.000 6.96 0.00 35.28 3.79
3237 3779 0.180171 CCTGTGGTATCCATGGCGAA 59.820 55.000 6.96 0.00 35.28 4.70
3238 3780 1.829456 CCTGTGGTATCCATGGCGA 59.171 57.895 6.96 0.00 35.28 5.54
3239 3781 1.893808 GCCTGTGGTATCCATGGCG 60.894 63.158 6.96 0.00 42.48 5.69
3240 3782 4.164258 GCCTGTGGTATCCATGGC 57.836 61.111 6.96 15.53 44.00 4.40
3242 3784 0.466189 GGGTGCCTGTGGTATCCATG 60.466 60.000 0.00 0.00 38.50 3.66
3243 3785 0.918799 TGGGTGCCTGTGGTATCCAT 60.919 55.000 2.52 0.00 43.50 3.41
3244 3786 1.540118 TGGGTGCCTGTGGTATCCA 60.540 57.895 2.52 2.52 46.09 3.41
3245 3787 0.258774 AATGGGTGCCTGTGGTATCC 59.741 55.000 0.00 0.00 39.12 2.59
3247 3789 0.258774 GGAATGGGTGCCTGTGGTAT 59.741 55.000 0.00 0.00 0.00 2.73
3248 3790 1.688811 GGAATGGGTGCCTGTGGTA 59.311 57.895 0.00 0.00 0.00 3.25
3249 3791 2.440599 GGAATGGGTGCCTGTGGT 59.559 61.111 0.00 0.00 0.00 4.16
3250 3792 2.362889 GGGAATGGGTGCCTGTGG 60.363 66.667 0.00 0.00 34.08 4.17
3255 3797 2.100197 GTTTTCTAGGGAATGGGTGCC 58.900 52.381 0.00 0.00 38.24 5.01
3256 3798 3.087370 AGTTTTCTAGGGAATGGGTGC 57.913 47.619 0.00 0.00 0.00 5.01
3257 3799 7.832187 TGTATTAAGTTTTCTAGGGAATGGGTG 59.168 37.037 0.00 0.00 0.00 4.61
3258 3800 7.935405 TGTATTAAGTTTTCTAGGGAATGGGT 58.065 34.615 0.00 0.00 0.00 4.51
3260 3802 8.053355 ACCTGTATTAAGTTTTCTAGGGAATGG 58.947 37.037 0.00 0.00 0.00 3.16
3261 3803 8.893727 CACCTGTATTAAGTTTTCTAGGGAATG 58.106 37.037 0.00 0.00 0.00 2.67
3262 3804 8.612145 ACACCTGTATTAAGTTTTCTAGGGAAT 58.388 33.333 0.00 0.00 0.00 3.01
3264 3806 7.563724 ACACCTGTATTAAGTTTTCTAGGGA 57.436 36.000 0.00 0.00 0.00 4.20
3265 3807 8.316214 TGTACACCTGTATTAAGTTTTCTAGGG 58.684 37.037 0.00 0.00 32.54 3.53
3266 3808 9.715121 TTGTACACCTGTATTAAGTTTTCTAGG 57.285 33.333 0.00 0.00 32.54 3.02
3269 3811 7.172019 CCGTTGTACACCTGTATTAAGTTTTCT 59.828 37.037 0.00 0.00 32.54 2.52
3270 3812 7.293018 CCGTTGTACACCTGTATTAAGTTTTC 58.707 38.462 0.00 0.00 32.54 2.29
3271 3813 6.205270 CCCGTTGTACACCTGTATTAAGTTTT 59.795 38.462 0.00 0.00 32.54 2.43
3272 3814 5.702209 CCCGTTGTACACCTGTATTAAGTTT 59.298 40.000 0.00 0.00 32.54 2.66
3275 3817 3.619929 GCCCGTTGTACACCTGTATTAAG 59.380 47.826 0.00 0.00 32.54 1.85
3276 3818 3.007723 TGCCCGTTGTACACCTGTATTAA 59.992 43.478 0.00 0.00 32.54 1.40
3277 3819 2.566279 TGCCCGTTGTACACCTGTATTA 59.434 45.455 0.00 0.00 32.54 0.98
3278 3820 1.348366 TGCCCGTTGTACACCTGTATT 59.652 47.619 0.00 0.00 32.54 1.89
3280 3822 0.033781 GTGCCCGTTGTACACCTGTA 59.966 55.000 0.00 0.00 0.00 2.74
3281 3823 1.227734 GTGCCCGTTGTACACCTGT 60.228 57.895 0.00 0.00 0.00 4.00
3282 3824 3.650369 GTGCCCGTTGTACACCTG 58.350 61.111 0.00 0.00 0.00 4.00
3285 3827 1.964373 CTGGGTGCCCGTTGTACAC 60.964 63.158 0.00 0.00 39.42 2.90
3286 3828 2.428187 CTGGGTGCCCGTTGTACA 59.572 61.111 2.44 0.00 39.42 2.90
3288 3830 1.997256 AAACCTGGGTGCCCGTTGTA 61.997 55.000 2.44 0.00 39.42 2.41
3289 3831 3.367907 AAACCTGGGTGCCCGTTGT 62.368 57.895 2.44 0.00 39.42 3.32
3290 3832 2.520741 AAACCTGGGTGCCCGTTG 60.521 61.111 2.44 0.00 39.42 4.10
3292 3834 1.493854 TATCAAACCTGGGTGCCCGT 61.494 55.000 2.44 0.00 39.42 5.28
3293 3835 0.106719 ATATCAAACCTGGGTGCCCG 60.107 55.000 2.44 0.00 39.42 6.13
3294 3836 1.692411 GATATCAAACCTGGGTGCCC 58.308 55.000 0.00 0.00 0.00 5.36
3295 3837 1.692411 GGATATCAAACCTGGGTGCC 58.308 55.000 4.83 0.00 0.00 5.01
3297 3839 3.380471 TTGGGATATCAAACCTGGGTG 57.620 47.619 4.83 0.00 0.00 4.61
3299 3841 5.955961 AATTTTGGGATATCAAACCTGGG 57.044 39.130 4.83 0.00 36.49 4.45
3300 3842 8.078060 AGTAAATTTTGGGATATCAAACCTGG 57.922 34.615 4.83 0.00 36.49 4.45
3301 3843 9.586435 GAAGTAAATTTTGGGATATCAAACCTG 57.414 33.333 4.83 0.00 36.49 4.00
3302 3844 9.547279 AGAAGTAAATTTTGGGATATCAAACCT 57.453 29.630 4.83 0.00 36.49 3.50
3303 3845 9.803315 GAGAAGTAAATTTTGGGATATCAAACC 57.197 33.333 4.83 0.00 36.49 3.27
3356 3898 8.210946 GCACACCCCTATATGAATATAGCATTA 58.789 37.037 10.62 0.00 40.42 1.90
3357 3899 7.056635 GCACACCCCTATATGAATATAGCATT 58.943 38.462 10.62 0.00 40.42 3.56
3360 3902 5.050490 CGCACACCCCTATATGAATATAGC 58.950 45.833 10.62 0.61 40.42 2.97
3361 3903 5.601662 CCGCACACCCCTATATGAATATAG 58.398 45.833 9.50 9.50 41.08 1.31
3362 3904 4.141801 GCCGCACACCCCTATATGAATATA 60.142 45.833 0.00 0.00 0.00 0.86
3363 3905 3.370527 GCCGCACACCCCTATATGAATAT 60.371 47.826 0.00 0.00 0.00 1.28
3365 3907 1.271379 GCCGCACACCCCTATATGAAT 60.271 52.381 0.00 0.00 0.00 2.57
3367 3909 1.051556 TGCCGCACACCCCTATATGA 61.052 55.000 0.00 0.00 0.00 2.15
3368 3910 0.884704 GTGCCGCACACCCCTATATG 60.885 60.000 18.79 0.00 44.02 1.78
3379 3921 4.385405 AGCTCTCAGGTGCCGCAC 62.385 66.667 15.50 15.50 32.98 5.34
3380 3922 4.383861 CAGCTCTCAGGTGCCGCA 62.384 66.667 0.00 0.00 36.88 5.69
3385 3927 0.958876 TGCATTGCAGCTCTCAGGTG 60.959 55.000 7.38 0.00 45.86 4.00
3388 3930 2.941453 AAATGCATTGCAGCTCTCAG 57.059 45.000 17.52 0.00 43.65 3.35
3389 3931 2.094390 GGAAAATGCATTGCAGCTCTCA 60.094 45.455 17.52 0.00 43.65 3.27
3390 3932 2.537401 GGAAAATGCATTGCAGCTCTC 58.463 47.619 17.52 10.18 43.65 3.20
3391 3933 1.135199 CGGAAAATGCATTGCAGCTCT 60.135 47.619 17.52 1.39 43.65 4.09
3392 3934 1.274596 CGGAAAATGCATTGCAGCTC 58.725 50.000 17.52 12.15 43.65 4.09
3393 3935 0.604578 ACGGAAAATGCATTGCAGCT 59.395 45.000 17.52 3.85 43.65 4.24
3394 3936 1.431496 AACGGAAAATGCATTGCAGC 58.569 45.000 17.52 6.30 43.65 5.25
3395 3937 4.675510 AGATAACGGAAAATGCATTGCAG 58.324 39.130 17.52 11.39 43.65 4.41
3396 3938 4.717233 AGATAACGGAAAATGCATTGCA 57.283 36.364 13.82 14.72 44.86 4.08
3397 3939 6.265577 AGTTAGATAACGGAAAATGCATTGC 58.734 36.000 13.82 8.32 40.96 3.56
3398 3940 7.432252 GGAAGTTAGATAACGGAAAATGCATTG 59.568 37.037 13.82 2.58 40.96 2.82
3401 3943 5.941058 TGGAAGTTAGATAACGGAAAATGCA 59.059 36.000 0.00 0.00 40.96 3.96
3404 3946 7.989416 TGTTGGAAGTTAGATAACGGAAAAT 57.011 32.000 0.00 0.00 40.96 1.82
3407 3949 9.675464 AATAATGTTGGAAGTTAGATAACGGAA 57.325 29.630 0.00 0.00 40.96 4.30
3408 3950 9.675464 AAATAATGTTGGAAGTTAGATAACGGA 57.325 29.630 0.00 0.00 40.96 4.69
3416 3991 8.984891 TGATGCAAAATAATGTTGGAAGTTAG 57.015 30.769 0.00 0.00 29.66 2.34
3420 3995 6.103997 AGCTGATGCAAAATAATGTTGGAAG 58.896 36.000 0.00 0.00 42.74 3.46
3422 3997 5.664294 AGCTGATGCAAAATAATGTTGGA 57.336 34.783 0.00 0.00 42.74 3.53
3431 4006 5.593679 ATCTTGCTAAGCTGATGCAAAAT 57.406 34.783 17.75 10.64 44.49 1.82
3439 4014 5.750547 CGAACTTGATATCTTGCTAAGCTGA 59.249 40.000 3.98 0.00 0.00 4.26
3454 4029 2.859165 TCTTTGGGAGCGAACTTGAT 57.141 45.000 0.00 0.00 0.00 2.57
3456 4031 2.481952 CTCTTCTTTGGGAGCGAACTTG 59.518 50.000 0.00 0.00 0.00 3.16
3460 4035 1.691976 TCACTCTTCTTTGGGAGCGAA 59.308 47.619 0.00 0.00 33.29 4.70
3461 4036 1.338107 TCACTCTTCTTTGGGAGCGA 58.662 50.000 0.00 0.00 33.29 4.93
3462 4037 2.169832 TTCACTCTTCTTTGGGAGCG 57.830 50.000 0.00 0.00 33.29 5.03
3494 4086 8.706492 TGCAAAACAATGATGGAAATTAGATC 57.294 30.769 0.00 0.00 0.00 2.75
3541 4133 1.075374 AGCTTTGCCCTGAATGTACCA 59.925 47.619 0.00 0.00 0.00 3.25
3543 4135 1.745653 GGAGCTTTGCCCTGAATGTAC 59.254 52.381 0.00 0.00 0.00 2.90
3556 4150 5.143369 ACTTCATTCTTCTTTGGGAGCTTT 58.857 37.500 0.00 0.00 0.00 3.51
3578 4172 8.512138 AGAAATGCACATTAGTTTTGGTACTAC 58.488 33.333 0.00 0.00 30.62 2.73
3596 4192 5.132502 ACATTATCCCGATTGAGAAATGCA 58.867 37.500 0.00 0.00 30.44 3.96
3659 4259 3.737047 CGTGTGTATATTCGAAGGGCTGT 60.737 47.826 3.35 0.00 0.00 4.40
3681 4281 2.203126 CTGCAAGGAGGGGATCGC 60.203 66.667 0.06 0.06 0.00 4.58
3682 4282 2.203126 GCTGCAAGGAGGGGATCG 60.203 66.667 0.00 0.00 0.00 3.69
3694 4294 1.066929 TCTACAAGCTGAATCGCTGCA 60.067 47.619 0.00 0.00 43.21 4.41
3708 4308 6.157904 TCGTACCATCATCGTTTTTCTACAA 58.842 36.000 0.00 0.00 0.00 2.41
3718 4318 7.867305 ATATCTAATCTCGTACCATCATCGT 57.133 36.000 0.00 0.00 0.00 3.73
3719 4319 8.184848 ACAATATCTAATCTCGTACCATCATCG 58.815 37.037 0.00 0.00 0.00 3.84
3730 4332 8.763049 TTGATGGCTTACAATATCTAATCTCG 57.237 34.615 0.00 0.00 0.00 4.04
3733 4335 9.507329 TCCTTTGATGGCTTACAATATCTAATC 57.493 33.333 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.