Multiple sequence alignment - TraesCS6A01G082400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G082400 chr6A 100.000 5349 0 0 1 5349 51405272 51410620 0.000000e+00 9878.0
1 TraesCS6A01G082400 chr6D 90.126 3251 222 51 136 3336 38883739 38886940 0.000000e+00 4133.0
2 TraesCS6A01G082400 chr6D 89.705 1253 94 21 3465 4707 38887152 38888379 0.000000e+00 1567.0
3 TraesCS6A01G082400 chr6D 90.498 221 17 4 5007 5224 38894590 38894809 6.780000e-74 289.0
4 TraesCS6A01G082400 chr6D 91.852 135 10 1 4876 5009 38888873 38889007 2.540000e-43 187.0
5 TraesCS6A01G082400 chr6D 92.857 98 7 0 19 116 38882961 38883058 5.580000e-30 143.0
6 TraesCS6A01G082400 chr6D 95.000 40 1 1 5216 5254 369972761 369972722 1.610000e-05 62.1
7 TraesCS6A01G082400 chr6B 88.525 3416 249 68 1 3336 90276742 90280094 0.000000e+00 4004.0
8 TraesCS6A01G082400 chr6B 90.148 1350 90 12 3488 4818 90280309 90281634 0.000000e+00 1716.0
9 TraesCS6A01G082400 chr6B 86.818 751 68 16 984 1729 418139592 418140316 0.000000e+00 809.0
10 TraesCS6A01G082400 chr6B 95.085 468 22 1 4883 5349 90281657 90282124 0.000000e+00 736.0
11 TraesCS6A01G082400 chr5B 88.042 761 60 12 974 1729 711517471 711516737 0.000000e+00 872.0
12 TraesCS6A01G082400 chr7B 86.745 762 68 14 974 1729 20987937 20987203 0.000000e+00 817.0
13 TraesCS6A01G082400 chr7B 97.436 39 1 0 5216 5254 139609481 139609519 3.460000e-07 67.6
14 TraesCS6A01G082400 chr4B 85.096 624 52 19 974 1595 233161525 233160941 2.760000e-167 599.0
15 TraesCS6A01G082400 chr1B 86.229 472 44 7 974 1445 128661502 128661952 4.810000e-135 492.0
16 TraesCS6A01G082400 chr1B 84.884 258 27 8 1484 1729 128661963 128662220 3.200000e-62 250.0
17 TraesCS6A01G082400 chr4D 97.436 39 1 0 5216 5254 27578933 27578895 3.460000e-07 67.6
18 TraesCS6A01G082400 chr4D 95.000 40 1 1 5216 5254 123351241 123351280 1.610000e-05 62.1
19 TraesCS6A01G082400 chr4D 95.000 40 1 1 5216 5254 123562179 123562218 1.610000e-05 62.1
20 TraesCS6A01G082400 chr4D 95.000 40 1 1 5216 5254 134980542 134980581 1.610000e-05 62.1
21 TraesCS6A01G082400 chr4D 95.000 40 1 1 5216 5254 240993661 240993622 1.610000e-05 62.1
22 TraesCS6A01G082400 chr4D 95.000 40 1 1 5216 5254 450897073 450897034 1.610000e-05 62.1
23 TraesCS6A01G082400 chr4A 96.875 32 1 0 1263 1294 724853842 724853811 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G082400 chr6A 51405272 51410620 5348 False 9878.0 9878 100.000000 1 5349 1 chr6A.!!$F1 5348
1 TraesCS6A01G082400 chr6D 38882961 38889007 6046 False 1507.5 4133 91.135000 19 5009 4 chr6D.!!$F2 4990
2 TraesCS6A01G082400 chr6B 90276742 90282124 5382 False 2152.0 4004 91.252667 1 5349 3 chr6B.!!$F2 5348
3 TraesCS6A01G082400 chr6B 418139592 418140316 724 False 809.0 809 86.818000 984 1729 1 chr6B.!!$F1 745
4 TraesCS6A01G082400 chr5B 711516737 711517471 734 True 872.0 872 88.042000 974 1729 1 chr5B.!!$R1 755
5 TraesCS6A01G082400 chr7B 20987203 20987937 734 True 817.0 817 86.745000 974 1729 1 chr7B.!!$R1 755
6 TraesCS6A01G082400 chr4B 233160941 233161525 584 True 599.0 599 85.096000 974 1595 1 chr4B.!!$R1 621
7 TraesCS6A01G082400 chr1B 128661502 128662220 718 False 371.0 492 85.556500 974 1729 2 chr1B.!!$F1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 1128 0.251787 ACCCCTGGACCATCTTTTGC 60.252 55.0 0.0 0.0 0.0 3.68 F
1448 2153 0.530744 CGAAATCGGAGTGGTCCTCA 59.469 55.0 0.0 0.0 42.4 3.86 F
2518 3252 0.456628 TTGTTGACTGGACGACGACA 59.543 50.0 0.0 0.0 31.3 4.35 F
3482 4273 0.117340 ACAGTCTAGGCTCTTGGGGT 59.883 55.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 2559 0.037697 TGTTGGACATCCGGAACTCG 60.038 55.0 9.01 0.0 39.43 4.18 R
3106 3864 2.363306 TGAACAAGCATGTCAAGGGT 57.637 45.0 0.00 0.0 39.40 4.34 R
4000 4853 0.108709 GCCGAATGCCAATCTTTGCA 60.109 50.0 0.00 0.0 42.52 4.08 R
4783 5936 0.248661 CAGTGTATCGCCTCTGACCG 60.249 60.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 2.696707 AGAGTGACACGTCCCTACAAAA 59.303 45.455 0.00 0.00 0.00 2.44
86 88 2.319438 AGGATAGGGTGAGAGGTTTCCT 59.681 50.000 0.00 0.00 36.03 3.36
118 126 6.700081 TCAGTACATGCCATACTCGAAATAAC 59.300 38.462 0.00 0.00 30.22 1.89
120 128 4.776349 ACATGCCATACTCGAAATAACCA 58.224 39.130 0.00 0.00 0.00 3.67
122 130 5.470098 ACATGCCATACTCGAAATAACCATC 59.530 40.000 0.00 0.00 0.00 3.51
169 838 6.345096 ACTTTAAATCATGGACAAAGTGGG 57.655 37.500 12.00 0.00 37.87 4.61
175 844 3.909732 TCATGGACAAAGTGGGAAAAGT 58.090 40.909 0.00 0.00 0.00 2.66
179 848 3.146847 GGACAAAGTGGGAAAAGTCGAT 58.853 45.455 0.00 0.00 0.00 3.59
185 854 4.286297 AGTGGGAAAAGTCGATGAATGA 57.714 40.909 0.00 0.00 0.00 2.57
186 855 4.256920 AGTGGGAAAAGTCGATGAATGAG 58.743 43.478 0.00 0.00 0.00 2.90
193 863 5.542616 AAAGTCGATGAATGAGCTTTCTG 57.457 39.130 0.00 0.00 0.00 3.02
199 869 6.468319 GTCGATGAATGAGCTTTCTGATTTTG 59.532 38.462 0.00 0.00 0.00 2.44
223 893 6.680666 GACTGAGTCAAAAGCAACTTGTTGC 61.681 44.000 25.52 25.52 39.09 4.17
245 915 8.462016 GTTGCTAGAATCAACATGGTAAAATCT 58.538 33.333 0.00 0.00 42.35 2.40
246 916 7.988737 TGCTAGAATCAACATGGTAAAATCTG 58.011 34.615 0.00 0.00 0.00 2.90
293 963 4.879197 TGTGCCATAGATCTCGATCATT 57.121 40.909 0.00 0.00 40.22 2.57
312 982 0.537653 TGCCATCGGACCATTCGTTA 59.462 50.000 0.00 0.00 0.00 3.18
313 983 1.140052 TGCCATCGGACCATTCGTTAT 59.860 47.619 0.00 0.00 0.00 1.89
344 1014 7.607991 AGAGAAAAGATTCGAATTTAGCTCCAA 59.392 33.333 12.81 0.00 40.63 3.53
405 1077 9.986833 AATTTTGTTTGTTAAAAGACTGAATGC 57.013 25.926 0.00 0.00 31.31 3.56
419 1093 6.112058 AGACTGAATGCCATTTCTTAGTCTC 58.888 40.000 15.61 0.00 39.34 3.36
454 1128 0.251787 ACCCCTGGACCATCTTTTGC 60.252 55.000 0.00 0.00 0.00 3.68
455 1129 1.315257 CCCCTGGACCATCTTTTGCG 61.315 60.000 0.00 0.00 0.00 4.85
489 1163 8.643752 GGAACAACATGGAAAACATATTAAACG 58.356 33.333 0.00 0.00 37.84 3.60
508 1182 1.328680 CGCCCATCTGAAAATGACTCG 59.671 52.381 0.00 0.00 0.00 4.18
530 1204 2.955660 TGAACCAACACTGAATTGACCC 59.044 45.455 0.00 0.00 0.00 4.46
535 1209 3.221771 CAACACTGAATTGACCCCAAGA 58.778 45.455 0.00 0.00 35.48 3.02
556 1230 7.548427 CCAAGATCATACTATAGCAGTCAATGG 59.452 40.741 0.00 0.00 38.80 3.16
559 1233 6.013842 TCATACTATAGCAGTCAATGGTCG 57.986 41.667 0.00 0.00 40.89 4.79
567 1241 2.035961 GCAGTCAATGGTCGCCTATCTA 59.964 50.000 0.00 0.00 0.00 1.98
582 1256 8.162880 GTCGCCTATCTATTTTTATGTCATTCG 58.837 37.037 0.00 0.00 0.00 3.34
584 1258 7.244192 GCCTATCTATTTTTATGTCATTCGCC 58.756 38.462 0.00 0.00 0.00 5.54
592 1266 1.960040 ATGTCATTCGCCTCGCCTCA 61.960 55.000 0.00 0.00 0.00 3.86
596 1270 1.021390 CATTCGCCTCGCCTCAAAGT 61.021 55.000 0.00 0.00 0.00 2.66
606 1280 1.461127 CGCCTCAAAGTCTTCTTTCCG 59.539 52.381 0.00 0.00 41.31 4.30
610 1284 4.554919 GCCTCAAAGTCTTCTTTCCGTTTC 60.555 45.833 0.00 0.00 41.31 2.78
703 1377 7.826252 AGTAAGCATCCTATGGCTACAAATATG 59.174 37.037 0.00 0.00 40.01 1.78
704 1378 4.946157 AGCATCCTATGGCTACAAATATGC 59.054 41.667 0.00 0.00 38.90 3.14
707 1381 4.651778 TCCTATGGCTACAAATATGCACC 58.348 43.478 0.00 0.00 0.00 5.01
748 1422 7.872113 AAGAGTTCCATAAAAGGCAGAATAG 57.128 36.000 0.00 0.00 0.00 1.73
749 1423 5.825151 AGAGTTCCATAAAAGGCAGAATAGC 59.175 40.000 0.00 0.00 0.00 2.97
751 1425 6.900194 AGTTCCATAAAAGGCAGAATAGCTA 58.100 36.000 0.00 0.00 34.17 3.32
752 1426 6.995091 AGTTCCATAAAAGGCAGAATAGCTAG 59.005 38.462 0.00 0.00 34.17 3.42
754 1428 7.136822 TCCATAAAAGGCAGAATAGCTAGAA 57.863 36.000 0.00 0.00 34.17 2.10
756 1430 8.052748 TCCATAAAAGGCAGAATAGCTAGAAAA 58.947 33.333 0.00 0.00 34.17 2.29
846 1533 1.675552 CACACCTCACCGTTCCTTTT 58.324 50.000 0.00 0.00 0.00 2.27
854 1541 0.841289 ACCGTTCCTTTTCTCCACCA 59.159 50.000 0.00 0.00 0.00 4.17
855 1542 1.213430 ACCGTTCCTTTTCTCCACCAA 59.787 47.619 0.00 0.00 0.00 3.67
856 1543 1.607148 CCGTTCCTTTTCTCCACCAAC 59.393 52.381 0.00 0.00 0.00 3.77
857 1544 1.263217 CGTTCCTTTTCTCCACCAACG 59.737 52.381 0.00 0.00 0.00 4.10
1212 1907 2.492090 CTCGACTTCTGGAGGGCG 59.508 66.667 1.43 1.43 0.00 6.13
1445 2150 1.814169 GGCGAAATCGGAGTGGTCC 60.814 63.158 4.84 0.00 40.23 4.46
1448 2153 0.530744 CGAAATCGGAGTGGTCCTCA 59.469 55.000 0.00 0.00 42.40 3.86
1449 2154 1.736032 CGAAATCGGAGTGGTCCTCAC 60.736 57.143 0.00 0.00 42.40 3.51
1454 2159 1.990614 GGAGTGGTCCTCACCCCTC 60.991 68.421 0.00 0.00 44.46 4.30
1455 2160 1.229209 GAGTGGTCCTCACCCCTCA 60.229 63.158 0.00 0.00 44.55 3.86
1456 2161 1.545706 GAGTGGTCCTCACCCCTCAC 61.546 65.000 0.00 0.00 44.55 3.51
1462 2174 2.664081 CCTCACCCCTCACCTGCTC 61.664 68.421 0.00 0.00 0.00 4.26
1469 2181 1.377994 CCTCACCTGCTCCTGCTTT 59.622 57.895 0.00 0.00 40.48 3.51
1475 2187 1.183676 CCTGCTCCTGCTTTGCCTTT 61.184 55.000 0.00 0.00 40.48 3.11
1715 2440 4.170468 AGTACTGAATGCCTATTTGGGG 57.830 45.455 0.00 0.00 36.00 4.96
1768 2493 1.925285 ATCAGAATGGGCCTCCGCAA 61.925 55.000 4.53 0.00 37.46 4.85
1795 2520 3.501445 AGAGCAGCACAATCTTTGAGAAC 59.499 43.478 0.00 0.00 0.00 3.01
1957 2682 2.173569 GGTAGATGGCCTTGAGATGGTT 59.826 50.000 3.32 0.00 0.00 3.67
1970 2695 7.050377 CCTTGAGATGGTTAATTAGCTCTGAA 58.950 38.462 0.00 0.00 0.00 3.02
1971 2696 7.011857 CCTTGAGATGGTTAATTAGCTCTGAAC 59.988 40.741 0.00 0.00 0.00 3.18
1981 2706 1.153269 GCTCTGAACCCTGCTAGGC 60.153 63.158 0.00 0.00 32.73 3.93
1983 2708 1.781786 CTCTGAACCCTGCTAGGCTA 58.218 55.000 0.00 0.00 32.73 3.93
1999 2724 5.350914 GCTAGGCTATCACTTCATGCTTATG 59.649 44.000 0.00 0.00 0.00 1.90
2059 2784 3.198635 AGTGACAGGGAGTACATCATTGG 59.801 47.826 0.00 0.00 0.00 3.16
2115 2840 9.582648 ACTATTGTGTTACAAAGGTAAGGAAAT 57.417 29.630 0.00 0.00 41.96 2.17
2161 2886 6.892485 TCAATGATGCTTCCTTCTATTCTGA 58.108 36.000 0.00 0.00 0.00 3.27
2165 2890 2.774234 TGCTTCCTTCTATTCTGAGGGG 59.226 50.000 0.00 0.00 34.42 4.79
2227 2952 9.608617 CATATGATGTTGCTGATAGAAATTGTC 57.391 33.333 0.00 0.00 0.00 3.18
2294 3019 8.657387 TTATATGTTTCCTTGTTTCCAATGGA 57.343 30.769 0.00 0.00 0.00 3.41
2296 3021 5.275067 TGTTTCCTTGTTTCCAATGGAAG 57.725 39.130 14.96 3.24 43.06 3.46
2341 3072 3.756933 AAGAATGCACAGCAACCAAAT 57.243 38.095 0.00 0.00 43.62 2.32
2370 3104 4.072131 GGACTAGTGTGAAAAATCCTGCA 58.928 43.478 0.00 0.00 0.00 4.41
2385 3119 2.092753 TCCTGCAGGCAAAATCTAGAGG 60.093 50.000 28.91 0.00 34.44 3.69
2387 3121 3.350833 CTGCAGGCAAAATCTAGAGGTT 58.649 45.455 5.57 0.00 0.00 3.50
2403 3137 4.401925 AGAGGTTTGCTGCTTTAACATCT 58.598 39.130 17.49 17.49 37.89 2.90
2404 3138 4.217118 AGAGGTTTGCTGCTTTAACATCTG 59.783 41.667 20.34 0.00 40.24 2.90
2455 3189 6.589830 AAAGTTGCATCGTAGTACATCATC 57.410 37.500 0.38 0.00 0.00 2.92
2478 3212 4.318332 CAACTCAGTTCAGAATAGGCACA 58.682 43.478 0.00 0.00 0.00 4.57
2512 3246 9.787532 AAATTTAATGATATTGTTGACTGGACG 57.212 29.630 0.00 0.00 0.00 4.79
2518 3252 0.456628 TTGTTGACTGGACGACGACA 59.543 50.000 0.00 0.00 31.30 4.35
2519 3253 0.456628 TGTTGACTGGACGACGACAA 59.543 50.000 0.00 0.00 30.45 3.18
2538 3272 7.208080 ACGACAATTCTGTGGATACCTTATAC 58.792 38.462 0.00 0.00 35.30 1.47
2539 3273 7.069578 ACGACAATTCTGTGGATACCTTATACT 59.930 37.037 0.00 0.00 35.30 2.12
2540 3274 8.573885 CGACAATTCTGTGGATACCTTATACTA 58.426 37.037 0.00 0.00 35.30 1.82
2650 3385 2.092212 TGAGGCCATTTCTCCATCCTTC 60.092 50.000 5.01 0.00 0.00 3.46
2678 3421 4.463186 ACATGTACCAGGACAGACTTCTAC 59.537 45.833 0.00 0.00 31.51 2.59
2686 3429 5.114780 CAGGACAGACTTCTACCATCATTG 58.885 45.833 0.00 0.00 0.00 2.82
2730 3474 6.495181 TGAGTTGTTGATAGAGGAAAGTCTCT 59.505 38.462 0.00 0.00 45.22 3.10
2781 3526 6.462552 TTGAAATCAAACAATGTGGACAGA 57.537 33.333 0.00 0.00 32.11 3.41
2839 3585 6.071984 TGGTAACCACACAATACAAAGGAAT 58.928 36.000 0.00 0.00 0.00 3.01
2844 3590 5.163513 CCACACAATACAAAGGAATGAAGC 58.836 41.667 0.00 0.00 0.00 3.86
2979 3726 2.807472 CGTGCAAGTACCTGTGGGTTTA 60.807 50.000 0.00 0.00 44.73 2.01
2980 3727 2.551032 GTGCAAGTACCTGTGGGTTTAC 59.449 50.000 0.00 0.00 44.73 2.01
2981 3728 2.156917 GCAAGTACCTGTGGGTTTACC 58.843 52.381 0.00 0.00 44.73 2.85
3048 3806 6.713762 TCCATTCCTGCTATAACAAAATGG 57.286 37.500 16.72 16.72 40.73 3.16
3067 3825 7.953158 AAATGGTATCTGATGTCGATACTTG 57.047 36.000 16.69 0.00 41.71 3.16
3072 3830 5.582689 ATCTGATGTCGATACTTGTCACA 57.417 39.130 0.00 0.00 0.00 3.58
3119 3877 5.179452 ACTATTGTTACCCTTGACATGCT 57.821 39.130 0.00 0.00 0.00 3.79
3157 3915 7.444183 TCTGACATTTTTCTCTTCCGTTATTGT 59.556 33.333 0.00 0.00 0.00 2.71
3172 3930 8.081517 TCCGTTATTGTATCCTTCTCCTTTTA 57.918 34.615 0.00 0.00 0.00 1.52
3176 3934 9.110502 GTTATTGTATCCTTCTCCTTTTACCTG 57.889 37.037 0.00 0.00 0.00 4.00
3185 3943 7.072076 TCCTTCTCCTTTTACCTGTCTTTAACT 59.928 37.037 0.00 0.00 0.00 2.24
3187 3945 9.945904 CTTCTCCTTTTACCTGTCTTTAACTAT 57.054 33.333 0.00 0.00 0.00 2.12
3194 3952 9.551339 TTTTACCTGTCTTTAACTATCCCTCTA 57.449 33.333 0.00 0.00 0.00 2.43
3198 3956 6.608002 CCTGTCTTTAACTATCCCTCTACACT 59.392 42.308 0.00 0.00 0.00 3.55
3201 3959 7.672660 TGTCTTTAACTATCCCTCTACACTCAA 59.327 37.037 0.00 0.00 0.00 3.02
3202 3960 7.975058 GTCTTTAACTATCCCTCTACACTCAAC 59.025 40.741 0.00 0.00 0.00 3.18
3211 3969 8.783660 ATCCCTCTACACTCAACTATTCATTA 57.216 34.615 0.00 0.00 0.00 1.90
3214 3972 9.482627 CCCTCTACACTCAACTATTCATTATTC 57.517 37.037 0.00 0.00 0.00 1.75
3264 4022 3.696051 TGGCTTCATTGAACTGCCTATTC 59.304 43.478 22.86 4.80 43.57 1.75
3269 4028 6.018343 GCTTCATTGAACTGCCTATTCTACTC 60.018 42.308 0.00 0.00 0.00 2.59
3272 4031 4.634184 TGAACTGCCTATTCTACTCGAC 57.366 45.455 0.00 0.00 0.00 4.20
3359 4148 5.888161 AGGAATTGTGTAGATTTGGTGGATC 59.112 40.000 0.00 0.00 0.00 3.36
3361 4150 6.152661 GGAATTGTGTAGATTTGGTGGATCAA 59.847 38.462 0.00 0.00 0.00 2.57
3362 4151 6.764308 ATTGTGTAGATTTGGTGGATCAAG 57.236 37.500 0.00 0.00 0.00 3.02
3363 4152 5.241403 TGTGTAGATTTGGTGGATCAAGT 57.759 39.130 0.00 0.00 0.00 3.16
3373 4164 3.118075 TGGTGGATCAAGTGTCTCAACAA 60.118 43.478 0.00 0.00 37.08 2.83
3409 4200 8.183536 CAGTTAATTGCACAGCATAAAGTGATA 58.816 33.333 0.00 0.00 38.76 2.15
3410 4201 8.906867 AGTTAATTGCACAGCATAAAGTGATAT 58.093 29.630 0.00 0.00 38.76 1.63
3411 4202 9.520204 GTTAATTGCACAGCATAAAGTGATATT 57.480 29.630 0.00 0.00 38.76 1.28
3418 4209 9.956720 GCACAGCATAAAGTGATATTTTTAGAT 57.043 29.630 0.00 0.00 37.97 1.98
3463 4254 6.707440 TTTTTGACATCAGCCAGAAAGTAA 57.293 33.333 0.00 0.00 0.00 2.24
3466 4257 4.318332 TGACATCAGCCAGAAAGTAACAG 58.682 43.478 0.00 0.00 0.00 3.16
3467 4258 4.202357 TGACATCAGCCAGAAAGTAACAGT 60.202 41.667 0.00 0.00 0.00 3.55
3468 4259 4.319177 ACATCAGCCAGAAAGTAACAGTC 58.681 43.478 0.00 0.00 0.00 3.51
3469 4260 4.040952 ACATCAGCCAGAAAGTAACAGTCT 59.959 41.667 0.00 0.00 0.00 3.24
3470 4261 5.246203 ACATCAGCCAGAAAGTAACAGTCTA 59.754 40.000 0.00 0.00 0.00 2.59
3471 4262 5.392767 TCAGCCAGAAAGTAACAGTCTAG 57.607 43.478 0.00 0.00 0.00 2.43
3472 4263 4.220821 TCAGCCAGAAAGTAACAGTCTAGG 59.779 45.833 0.00 0.00 0.00 3.02
3473 4264 3.055747 AGCCAGAAAGTAACAGTCTAGGC 60.056 47.826 0.00 0.00 36.58 3.93
3474 4265 3.055747 GCCAGAAAGTAACAGTCTAGGCT 60.056 47.826 0.00 0.00 34.99 4.58
3475 4266 4.749976 CCAGAAAGTAACAGTCTAGGCTC 58.250 47.826 0.00 0.00 0.00 4.70
3476 4267 4.464597 CCAGAAAGTAACAGTCTAGGCTCT 59.535 45.833 0.00 0.00 0.00 4.09
3477 4268 5.046950 CCAGAAAGTAACAGTCTAGGCTCTT 60.047 44.000 0.00 0.00 0.00 2.85
3478 4269 5.866633 CAGAAAGTAACAGTCTAGGCTCTTG 59.133 44.000 0.00 0.00 0.00 3.02
3481 4272 1.280457 AACAGTCTAGGCTCTTGGGG 58.720 55.000 0.00 0.00 0.00 4.96
3482 4273 0.117340 ACAGTCTAGGCTCTTGGGGT 59.883 55.000 0.00 0.00 0.00 4.95
3483 4274 1.361543 ACAGTCTAGGCTCTTGGGGTA 59.638 52.381 0.00 0.00 0.00 3.69
3485 4276 2.168728 CAGTCTAGGCTCTTGGGGTAAC 59.831 54.545 0.00 0.00 0.00 2.50
3499 4345 1.750778 GGGTAACATCACCTTGCATGG 59.249 52.381 16.76 16.76 38.73 3.66
3508 4354 2.821378 TCACCTTGCATGGAGTGAATTG 59.179 45.455 24.48 10.64 36.36 2.32
3510 4356 1.134907 CCTTGCATGGAGTGAATTGCC 60.135 52.381 13.33 0.00 34.20 4.52
3515 4361 2.429610 GCATGGAGTGAATTGCCAGAAT 59.570 45.455 0.00 0.00 34.74 2.40
3516 4362 3.737047 GCATGGAGTGAATTGCCAGAATG 60.737 47.826 0.00 0.00 34.74 2.67
3517 4363 1.820519 TGGAGTGAATTGCCAGAATGC 59.179 47.619 0.00 0.00 31.97 3.56
3532 4378 3.167345 TGCGTCGATGTGCATGTG 58.833 55.556 6.48 0.00 35.90 3.21
3533 4379 1.667510 TGCGTCGATGTGCATGTGT 60.668 52.632 6.48 0.00 35.90 3.72
3534 4380 0.389166 TGCGTCGATGTGCATGTGTA 60.389 50.000 6.48 0.00 35.90 2.90
3535 4381 0.930310 GCGTCGATGTGCATGTGTAT 59.070 50.000 6.48 0.00 0.00 2.29
3536 4382 2.124122 GCGTCGATGTGCATGTGTATA 58.876 47.619 6.48 0.00 0.00 1.47
3537 4383 2.731451 GCGTCGATGTGCATGTGTATAT 59.269 45.455 6.48 0.00 0.00 0.86
3538 4384 3.184379 GCGTCGATGTGCATGTGTATATT 59.816 43.478 6.48 0.00 0.00 1.28
3542 4388 6.243551 GTCGATGTGCATGTGTATATTATGC 58.756 40.000 0.00 0.00 45.53 3.14
3543 4389 6.091305 GTCGATGTGCATGTGTATATTATGCT 59.909 38.462 15.33 1.74 45.53 3.79
3576 4429 7.479352 ACATCATATACTCTTGCTCAGCTAT 57.521 36.000 0.00 0.00 0.00 2.97
3588 4441 6.323482 TCTTGCTCAGCTATTTATCTGTCTCT 59.677 38.462 0.00 0.00 0.00 3.10
3590 4443 5.595952 TGCTCAGCTATTTATCTGTCTCTGA 59.404 40.000 0.00 0.00 0.00 3.27
3701 4554 0.470766 TCCGTGCAGGTAACCACTTT 59.529 50.000 5.57 0.00 41.99 2.66
3716 4569 2.814336 CCACTTTCCTTCACTACCTTGC 59.186 50.000 0.00 0.00 0.00 4.01
3722 4575 1.537202 CCTTCACTACCTTGCTTGCAC 59.463 52.381 0.00 0.00 0.00 4.57
3750 4603 3.244215 TGGTAAGAGGTGAAACAGAGCTG 60.244 47.826 0.00 0.00 39.98 4.24
3774 4627 6.262273 TGTTTGAATAGTGAGGTTGAAGGAAC 59.738 38.462 0.00 0.00 0.00 3.62
3777 4630 7.311092 TGAATAGTGAGGTTGAAGGAACTAA 57.689 36.000 0.00 0.00 38.49 2.24
3778 4631 7.159372 TGAATAGTGAGGTTGAAGGAACTAAC 58.841 38.462 0.00 0.00 38.49 2.34
3783 4636 6.890268 AGTGAGGTTGAAGGAACTAACTTTTT 59.110 34.615 0.00 0.00 38.49 1.94
3784 4637 8.050930 AGTGAGGTTGAAGGAACTAACTTTTTA 58.949 33.333 0.00 0.00 38.49 1.52
3786 4639 9.416284 TGAGGTTGAAGGAACTAACTTTTTAAT 57.584 29.630 0.00 0.00 38.49 1.40
3787 4640 9.678941 GAGGTTGAAGGAACTAACTTTTTAATG 57.321 33.333 0.00 0.00 38.49 1.90
3788 4641 8.141909 AGGTTGAAGGAACTAACTTTTTAATGC 58.858 33.333 0.00 0.00 38.49 3.56
3789 4642 8.141909 GGTTGAAGGAACTAACTTTTTAATGCT 58.858 33.333 0.00 0.00 38.49 3.79
3790 4643 8.968242 GTTGAAGGAACTAACTTTTTAATGCTG 58.032 33.333 0.00 0.00 38.49 4.41
3798 4651 7.593825 ACTAACTTTTTAATGCTGGACATGAC 58.406 34.615 0.00 0.00 39.60 3.06
3802 4655 7.444299 ACTTTTTAATGCTGGACATGACAAAT 58.556 30.769 0.00 0.00 39.60 2.32
3806 4659 5.670792 AATGCTGGACATGACAAATGAAT 57.329 34.783 0.00 0.00 39.60 2.57
3807 4660 4.443913 TGCTGGACATGACAAATGAATG 57.556 40.909 0.00 0.00 0.00 2.67
3808 4661 3.193903 TGCTGGACATGACAAATGAATGG 59.806 43.478 0.00 0.00 0.00 3.16
3812 4665 6.028146 TGGACATGACAAATGAATGGAAAG 57.972 37.500 0.00 0.00 0.00 2.62
3870 4723 7.944554 AGAATACCACTTTCTTTCCTTCATTCA 59.055 33.333 0.00 0.00 29.12 2.57
3876 4729 7.811713 CCACTTTCTTTCCTTCATTCATTCTTC 59.188 37.037 0.00 0.00 0.00 2.87
3880 4733 7.312657 TCTTTCCTTCATTCATTCTTCGATG 57.687 36.000 0.00 0.00 0.00 3.84
3884 4737 6.045318 TCCTTCATTCATTCTTCGATGACTC 58.955 40.000 0.00 0.00 35.86 3.36
3886 4739 6.314648 CCTTCATTCATTCTTCGATGACTCAA 59.685 38.462 0.00 0.00 35.86 3.02
3894 4747 8.232513 TCATTCTTCGATGACTCAAAATTTCTG 58.767 33.333 0.00 0.00 31.35 3.02
3905 4758 9.434420 TGACTCAAAATTTCTGTTGTTTTGATT 57.566 25.926 11.47 7.41 45.39 2.57
3931 4784 0.244994 CAGTGGAGTCAAGACGAGGG 59.755 60.000 0.00 0.00 36.20 4.30
3940 4793 1.532316 AAGACGAGGGAACGGTGGA 60.532 57.895 0.00 0.00 37.61 4.02
3958 4811 0.662970 GATCGACTGCCTGCGAGATC 60.663 60.000 0.00 0.00 40.14 2.75
3991 4844 4.355250 CCATGAGGATATGGGCATCCCC 62.355 59.091 0.00 0.00 44.93 4.81
4063 4916 0.531200 GAATCGAACCTGGACTCCGT 59.469 55.000 0.00 0.00 0.00 4.69
4108 4961 4.070552 GAGCCACCTTCGCCGAGT 62.071 66.667 0.00 0.00 0.00 4.18
4168 5021 1.639722 TTGTCCGAGGAATGGAGTCA 58.360 50.000 0.00 0.00 35.82 3.41
4195 5048 4.019051 AGTGACCAATCAGACATCATGGAA 60.019 41.667 0.00 0.00 34.75 3.53
4222 5075 2.949644 AGAGAAACCTGTGAAAAACCGG 59.050 45.455 0.00 0.00 39.02 5.28
4306 5159 3.328931 TCCTGACAAAGGCTCTCATCTTT 59.671 43.478 0.00 0.00 46.92 2.52
4312 5165 0.326264 AGGCTCTCATCTTTGGCGTT 59.674 50.000 0.00 0.00 0.00 4.84
4320 5173 1.169661 ATCTTTGGCGTTGCACGGAA 61.170 50.000 10.02 0.00 42.82 4.30
4367 5220 4.892345 TGTAGGATCTGACATCTTCCTCAG 59.108 45.833 0.18 0.00 39.33 3.35
4368 5221 3.307506 AGGATCTGACATCTTCCTCAGG 58.692 50.000 0.00 0.00 33.22 3.86
4398 5251 1.474077 GCCAATTTGCGTGGAGAGAAT 59.526 47.619 0.00 0.00 38.54 2.40
4435 5288 1.339055 ACTGTAGCACATGCCGTTGAT 60.339 47.619 0.00 0.00 43.38 2.57
4473 5326 0.999406 GTGTATATATGCTGCCGGCG 59.001 55.000 23.90 17.75 45.43 6.46
4476 5329 0.174845 TATATATGCTGCCGGCGGTC 59.825 55.000 34.76 26.23 45.43 4.79
4709 5578 5.801380 TGGTTTTCCAGTCATAGTTACTCC 58.199 41.667 0.00 0.00 46.22 3.85
4710 5579 4.868734 GGTTTTCCAGTCATAGTTACTCCG 59.131 45.833 0.00 0.00 40.31 4.63
4745 5615 4.629251 AAAAATGCATTTTGCCAACGTT 57.371 31.818 32.23 15.16 44.23 3.99
4812 5967 6.258727 CAGAGGCGATACACTGATAATTTTGT 59.741 38.462 0.00 0.00 32.90 2.83
4813 5968 6.823689 AGAGGCGATACACTGATAATTTTGTT 59.176 34.615 0.00 0.00 0.00 2.83
4814 5969 7.336931 AGAGGCGATACACTGATAATTTTGTTT 59.663 33.333 0.00 0.00 0.00 2.83
4815 5970 7.250569 AGGCGATACACTGATAATTTTGTTTG 58.749 34.615 0.00 0.00 0.00 2.93
4816 5971 6.020678 GGCGATACACTGATAATTTTGTTTGC 60.021 38.462 0.00 0.00 0.00 3.68
4817 5972 6.747280 GCGATACACTGATAATTTTGTTTGCT 59.253 34.615 0.00 0.00 0.00 3.91
4818 5973 7.273381 GCGATACACTGATAATTTTGTTTGCTT 59.727 33.333 0.00 0.00 0.00 3.91
4819 5974 9.767684 CGATACACTGATAATTTTGTTTGCTTA 57.232 29.630 0.00 0.00 0.00 3.09
4823 5978 8.629158 ACACTGATAATTTTGTTTGCTTACTCA 58.371 29.630 0.00 0.00 0.00 3.41
4824 5979 9.630098 CACTGATAATTTTGTTTGCTTACTCAT 57.370 29.630 0.00 0.00 0.00 2.90
4825 5980 9.630098 ACTGATAATTTTGTTTGCTTACTCATG 57.370 29.630 0.00 0.00 0.00 3.07
4826 5981 8.984891 TGATAATTTTGTTTGCTTACTCATGG 57.015 30.769 0.00 0.00 0.00 3.66
4827 5982 8.801299 TGATAATTTTGTTTGCTTACTCATGGA 58.199 29.630 0.00 0.00 0.00 3.41
4828 5983 9.807649 GATAATTTTGTTTGCTTACTCATGGAT 57.192 29.630 0.00 0.00 0.00 3.41
4829 5984 7.894376 AATTTTGTTTGCTTACTCATGGATG 57.106 32.000 0.00 0.00 0.00 3.51
4830 5985 6.647334 TTTTGTTTGCTTACTCATGGATGA 57.353 33.333 0.00 0.00 35.16 2.92
4831 5986 6.647334 TTTGTTTGCTTACTCATGGATGAA 57.353 33.333 0.00 0.00 36.18 2.57
4832 5987 5.885230 TGTTTGCTTACTCATGGATGAAG 57.115 39.130 0.00 0.00 36.18 3.02
4833 5988 5.316167 TGTTTGCTTACTCATGGATGAAGT 58.684 37.500 0.00 0.00 36.18 3.01
4834 5989 6.472016 TGTTTGCTTACTCATGGATGAAGTA 58.528 36.000 0.00 0.00 36.18 2.24
4835 5990 6.595326 TGTTTGCTTACTCATGGATGAAGTAG 59.405 38.462 0.00 0.00 36.18 2.57
4836 5991 5.939764 TGCTTACTCATGGATGAAGTAGT 57.060 39.130 0.00 0.00 36.18 2.73
4837 5992 7.418337 TTGCTTACTCATGGATGAAGTAGTA 57.582 36.000 0.00 0.00 36.18 1.82
4838 5993 7.043961 TGCTTACTCATGGATGAAGTAGTAG 57.956 40.000 0.00 0.00 36.18 2.57
4839 5994 6.833933 TGCTTACTCATGGATGAAGTAGTAGA 59.166 38.462 0.00 0.00 36.18 2.59
5001 6235 7.196331 GTCAAATACAGGCCAGTAAAATGATC 58.804 38.462 12.50 8.06 0.00 2.92
5113 6347 3.246021 ACCTGGGAAGTAGGAGTACACAT 60.246 47.826 0.00 0.00 38.71 3.21
5198 6432 4.518970 TGGTTCTTCAGTTGGACTAATTGC 59.481 41.667 0.00 0.00 0.00 3.56
5201 6435 6.374578 GTTCTTCAGTTGGACTAATTGCTTC 58.625 40.000 0.00 0.00 0.00 3.86
5202 6436 5.620206 TCTTCAGTTGGACTAATTGCTTCA 58.380 37.500 0.00 0.00 0.00 3.02
5262 6496 4.343526 TGCCATTTTAGGTTTCAGCTTGAA 59.656 37.500 0.00 0.00 34.03 2.69
5300 6534 9.629878 TTAGAAGGAAAGTAAGATAGAGACGAT 57.370 33.333 0.00 0.00 0.00 3.73
5301 6535 8.528044 AGAAGGAAAGTAAGATAGAGACGATT 57.472 34.615 0.00 0.00 0.00 3.34
5315 6549 3.053831 GACGATTGTCTTCTTTCCCCA 57.946 47.619 5.79 0.00 42.08 4.96
5325 6560 0.771127 TCTTTCCCCACTCACAAGGG 59.229 55.000 0.00 0.00 45.04 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.749634 CGTACTCCCTCCGTTCAGAAT 59.250 52.381 0.00 0.00 0.00 2.40
6 7 2.425143 ATACGTACTCCCTCCGTTCA 57.575 50.000 0.00 0.00 36.12 3.18
8 9 2.827921 ACAAATACGTACTCCCTCCGTT 59.172 45.455 0.00 0.00 36.12 4.44
59 61 4.439860 ACCTCTCACCCTATCCTTTCTTT 58.560 43.478 0.00 0.00 0.00 2.52
86 88 5.321102 AGTATGGCATGTACTGAACCAAAA 58.679 37.500 10.98 0.00 33.30 2.44
141 810 9.003658 CACTTTGTCCATGATTTAAAGTACTCT 57.996 33.333 13.25 0.00 38.96 3.24
143 812 7.176690 CCCACTTTGTCCATGATTTAAAGTACT 59.823 37.037 13.25 0.00 38.96 2.73
169 838 6.020372 CAGAAAGCTCATTCATCGACTTTTC 58.980 40.000 1.17 0.00 0.00 2.29
175 844 6.372381 TCAAAATCAGAAAGCTCATTCATCGA 59.628 34.615 1.17 0.00 0.00 3.59
179 848 6.487668 TCAGTCAAAATCAGAAAGCTCATTCA 59.512 34.615 1.17 0.00 0.00 2.57
185 854 5.371526 TGACTCAGTCAAAATCAGAAAGCT 58.628 37.500 4.55 0.00 39.78 3.74
186 855 5.679734 TGACTCAGTCAAAATCAGAAAGC 57.320 39.130 4.55 0.00 39.78 3.51
199 869 4.622701 ACAAGTTGCTTTTGACTCAGTC 57.377 40.909 1.81 0.00 0.00 3.51
223 893 7.988737 TGCAGATTTTACCATGTTGATTCTAG 58.011 34.615 0.00 0.00 0.00 2.43
235 905 5.999205 ATGTGGAAATGCAGATTTTACCA 57.001 34.783 0.00 0.00 31.58 3.25
245 915 4.059511 CTGCAAAGAAATGTGGAAATGCA 58.940 39.130 0.00 0.00 39.95 3.96
246 916 4.060205 ACTGCAAAGAAATGTGGAAATGC 58.940 39.130 0.00 0.00 0.00 3.56
293 963 0.537653 TAACGAATGGTCCGATGGCA 59.462 50.000 0.00 0.00 0.00 4.92
381 1051 7.604164 TGGCATTCAGTCTTTTAACAAACAAAA 59.396 29.630 0.00 0.00 0.00 2.44
386 1056 8.203485 AGAAATGGCATTCAGTCTTTTAACAAA 58.797 29.630 14.04 0.00 30.33 2.83
393 1063 6.944862 AGACTAAGAAATGGCATTCAGTCTTT 59.055 34.615 25.35 14.38 38.61 2.52
403 1074 6.644347 CCTTTCTAGAGACTAAGAAATGGCA 58.356 40.000 11.12 0.00 40.08 4.92
405 1077 6.883744 AGCCTTTCTAGAGACTAAGAAATGG 58.116 40.000 11.12 13.57 40.08 3.16
419 1093 4.455606 CAGGGGTATCAAAGCCTTTCTAG 58.544 47.826 0.00 0.00 45.70 2.43
454 1128 1.068333 CCATGTTGTTCCTTGAAGGCG 60.068 52.381 6.30 0.00 34.61 5.52
455 1129 2.238521 TCCATGTTGTTCCTTGAAGGC 58.761 47.619 6.30 0.00 34.61 4.35
489 1163 2.096496 CACGAGTCATTTTCAGATGGGC 59.904 50.000 0.00 0.00 0.00 5.36
508 1182 3.243401 GGGTCAATTCAGTGTTGGTTCAC 60.243 47.826 0.00 0.00 38.46 3.18
530 1204 7.548427 CCATTGACTGCTATAGTATGATCTTGG 59.452 40.741 0.84 4.18 40.53 3.61
535 1209 6.625362 CGACCATTGACTGCTATAGTATGAT 58.375 40.000 0.84 0.00 40.53 2.45
556 1230 8.162880 CGAATGACATAAAAATAGATAGGCGAC 58.837 37.037 0.00 0.00 0.00 5.19
559 1233 7.119846 AGGCGAATGACATAAAAATAGATAGGC 59.880 37.037 0.00 0.00 0.00 3.93
567 1241 3.243068 GGCGAGGCGAATGACATAAAAAT 60.243 43.478 0.00 0.00 0.00 1.82
582 1256 0.036858 AGAAGACTTTGAGGCGAGGC 60.037 55.000 0.00 0.00 0.00 4.70
584 1258 2.739379 GGAAAGAAGACTTTGAGGCGAG 59.261 50.000 0.00 0.00 44.97 5.03
639 1313 5.659440 TTTGGCCTCCACAATATTCTTTC 57.341 39.130 3.32 0.00 30.78 2.62
643 1317 5.659440 TCTTTTTGGCCTCCACAATATTC 57.341 39.130 3.32 0.00 30.78 1.75
703 1377 1.597742 TTCAGTTGCAGAAGAGGTGC 58.402 50.000 0.00 0.00 41.59 5.01
704 1378 4.336433 TCTTTTTCAGTTGCAGAAGAGGTG 59.664 41.667 0.00 0.00 0.00 4.00
707 1381 5.747951 ACTCTTTTTCAGTTGCAGAAGAG 57.252 39.130 9.41 9.41 43.40 2.85
748 1422 3.983044 TGGAACTCCTCCTTTTCTAGC 57.017 47.619 0.00 0.00 45.64 3.42
749 1423 5.012148 TCTGTTGGAACTCCTCCTTTTCTAG 59.988 44.000 0.00 0.00 45.64 2.43
751 1425 3.716872 TCTGTTGGAACTCCTCCTTTTCT 59.283 43.478 0.00 0.00 45.64 2.52
752 1426 3.815962 GTCTGTTGGAACTCCTCCTTTTC 59.184 47.826 0.00 0.00 45.64 2.29
754 1428 2.777692 TGTCTGTTGGAACTCCTCCTTT 59.222 45.455 0.00 0.00 45.64 3.11
756 1430 1.974236 CTGTCTGTTGGAACTCCTCCT 59.026 52.381 0.00 0.00 45.64 3.69
800 1487 0.108615 AGTAGCGATGTGACCACTGC 60.109 55.000 1.62 3.63 0.00 4.40
805 1492 1.140407 GCACGAGTAGCGATGTGACC 61.140 60.000 0.00 0.00 44.57 4.02
846 1533 1.574134 GTTTCGTTCGTTGGTGGAGA 58.426 50.000 0.00 0.00 0.00 3.71
854 1541 5.528320 TCTCTTTTATTGGGTTTCGTTCGTT 59.472 36.000 0.00 0.00 0.00 3.85
855 1542 5.058490 TCTCTTTTATTGGGTTTCGTTCGT 58.942 37.500 0.00 0.00 0.00 3.85
856 1543 5.600908 TCTCTTTTATTGGGTTTCGTTCG 57.399 39.130 0.00 0.00 0.00 3.95
857 1544 7.198306 TCTTCTCTTTTATTGGGTTTCGTTC 57.802 36.000 0.00 0.00 0.00 3.95
1329 2034 1.749033 GAACATCTCGGGGGCCTAG 59.251 63.158 0.84 0.00 0.00 3.02
1445 2150 2.664081 GGAGCAGGTGAGGGGTGAG 61.664 68.421 0.00 0.00 0.00 3.51
1448 2153 2.608988 CAGGAGCAGGTGAGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
1449 2154 4.106925 GCAGGAGCAGGTGAGGGG 62.107 72.222 0.00 0.00 41.58 4.79
1453 2158 1.601759 GCAAAGCAGGAGCAGGTGA 60.602 57.895 0.00 0.00 45.49 4.02
1454 2159 2.633509 GGCAAAGCAGGAGCAGGTG 61.634 63.158 0.00 0.00 45.49 4.00
1455 2160 2.282745 GGCAAAGCAGGAGCAGGT 60.283 61.111 0.00 0.00 45.49 4.00
1456 2161 1.183676 AAAGGCAAAGCAGGAGCAGG 61.184 55.000 0.00 0.00 45.49 4.85
1475 2187 2.710902 CCATCTCCGACGACCTGCA 61.711 63.158 0.00 0.00 0.00 4.41
1715 2440 5.291905 ACAGTACAGACCCATAATTAGCC 57.708 43.478 0.00 0.00 0.00 3.93
1768 2493 3.641434 AAGATTGTGCTGCTCTGGTAT 57.359 42.857 0.00 0.00 0.00 2.73
1795 2520 0.391927 TTACTTCATCCGGGGTTGCG 60.392 55.000 0.00 0.00 0.00 4.85
1822 2547 2.611971 CCGGAACTCGTCATCTCCAAAA 60.612 50.000 0.00 0.00 37.11 2.44
1834 2559 0.037697 TGTTGGACATCCGGAACTCG 60.038 55.000 9.01 0.00 39.43 4.18
1957 2682 4.345257 CCTAGCAGGGTTCAGAGCTAATTA 59.655 45.833 0.00 0.00 38.92 1.40
1971 2696 2.042464 TGAAGTGATAGCCTAGCAGGG 58.958 52.381 0.00 0.00 35.37 4.45
1981 2706 6.039047 AGCAAACCATAAGCATGAAGTGATAG 59.961 38.462 0.00 0.00 33.67 2.08
1983 2708 4.708421 AGCAAACCATAAGCATGAAGTGAT 59.292 37.500 0.00 0.00 33.67 3.06
1999 2724 1.074752 CGAGCAAGAGAGAGCAAACC 58.925 55.000 0.00 0.00 0.00 3.27
2059 2784 1.217882 CAGTTTCCATATCCGGCGAC 58.782 55.000 9.30 0.00 0.00 5.19
2161 2886 5.369993 GGTTCTCCTATAAATCTCAACCCCT 59.630 44.000 0.00 0.00 0.00 4.79
2165 2890 5.234543 GCACGGTTCTCCTATAAATCTCAAC 59.765 44.000 0.00 0.00 0.00 3.18
2307 3032 7.095523 GCTGTGCATTCTTTTAACACAAATGAT 60.096 33.333 0.00 0.00 40.45 2.45
2308 3033 6.200665 GCTGTGCATTCTTTTAACACAAATGA 59.799 34.615 0.00 0.00 40.45 2.57
2310 3035 6.047870 TGCTGTGCATTCTTTTAACACAAAT 58.952 32.000 0.00 0.00 40.45 2.32
2315 3040 4.142071 TGGTTGCTGTGCATTCTTTTAACA 60.142 37.500 0.00 0.00 38.76 2.41
2316 3041 4.367450 TGGTTGCTGTGCATTCTTTTAAC 58.633 39.130 0.00 0.00 38.76 2.01
2341 3072 6.713450 GGATTTTTCACACTAGTCCCTTGTAA 59.287 38.462 0.00 0.00 0.00 2.41
2385 3119 4.610945 ACACAGATGTTAAAGCAGCAAAC 58.389 39.130 0.00 0.00 34.46 2.93
2387 3121 6.183360 TGTTTACACAGATGTTAAAGCAGCAA 60.183 34.615 0.00 0.00 40.48 3.91
2403 3137 7.075121 GTCAACATCATCGATTTGTTTACACA 58.925 34.615 20.22 5.53 31.48 3.72
2404 3138 7.075121 TGTCAACATCATCGATTTGTTTACAC 58.925 34.615 22.20 17.15 34.38 2.90
2434 3168 4.099419 TGGATGATGTACTACGATGCAACT 59.901 41.667 0.00 0.00 0.00 3.16
2447 3181 6.358974 TTCTGAACTGAGTTGGATGATGTA 57.641 37.500 0.90 0.00 0.00 2.29
2455 3189 3.686726 GTGCCTATTCTGAACTGAGTTGG 59.313 47.826 0.90 0.00 0.00 3.77
2512 3246 4.124851 AGGTATCCACAGAATTGTCGTC 57.875 45.455 0.00 0.00 34.62 4.20
2538 3272 5.175859 ACGTGACACCTCATTACCATTTAG 58.824 41.667 0.00 0.00 0.00 1.85
2539 3273 5.155278 ACGTGACACCTCATTACCATTTA 57.845 39.130 0.00 0.00 0.00 1.40
2540 3274 4.015872 ACGTGACACCTCATTACCATTT 57.984 40.909 0.00 0.00 0.00 2.32
2545 3279 4.119442 ACCATACGTGACACCTCATTAC 57.881 45.455 0.00 0.00 0.00 1.89
2555 3289 5.314923 TCTACCAAGTTACCATACGTGAC 57.685 43.478 0.00 0.00 30.41 3.67
2637 3372 4.466370 ACATGTACTCGAAGGATGGAGAAA 59.534 41.667 0.00 0.00 35.20 2.52
2650 3385 3.014623 TCTGTCCTGGTACATGTACTCG 58.985 50.000 29.89 21.40 38.20 4.18
2757 3502 6.871844 TCTGTCCACATTGTTTGATTTCAAA 58.128 32.000 1.66 1.66 42.90 2.69
2765 3510 8.498054 AGTTATCTATCTGTCCACATTGTTTG 57.502 34.615 0.00 0.00 0.00 2.93
2774 3519 6.737720 ATGCAAGAGTTATCTATCTGTCCA 57.262 37.500 0.00 0.00 33.45 4.02
2828 3574 6.721318 TCCTAGTTGCTTCATTCCTTTGTAT 58.279 36.000 0.00 0.00 0.00 2.29
2984 3731 3.307242 GGATTTAGTCATGACACGCAGTC 59.693 47.826 27.02 15.58 41.61 3.51
2986 3733 3.261580 TGGATTTAGTCATGACACGCAG 58.738 45.455 27.02 0.00 0.00 5.18
2988 3735 3.623060 ACATGGATTTAGTCATGACACGC 59.377 43.478 27.02 11.29 42.25 5.34
3048 3806 6.495706 TGTGACAAGTATCGACATCAGATAC 58.504 40.000 7.95 7.95 46.47 2.24
3067 3825 8.768955 CATAGAACTTTCTATAAGGCATGTGAC 58.231 37.037 10.51 0.00 46.01 3.67
3106 3864 2.363306 TGAACAAGCATGTCAAGGGT 57.637 45.000 0.00 0.00 39.40 4.34
3137 3895 9.462606 AAGGATACAATAACGGAAGAGAAAAAT 57.537 29.630 0.00 0.00 41.41 1.82
3143 3901 6.041069 AGGAGAAGGATACAATAACGGAAGAG 59.959 42.308 0.00 0.00 41.41 2.85
3149 3907 7.985752 AGGTAAAAGGAGAAGGATACAATAACG 59.014 37.037 0.00 0.00 41.41 3.18
3157 3915 7.569599 AAAGACAGGTAAAAGGAGAAGGATA 57.430 36.000 0.00 0.00 0.00 2.59
3172 3930 6.380560 GTGTAGAGGGATAGTTAAAGACAGGT 59.619 42.308 0.00 0.00 0.00 4.00
3176 3934 7.642082 TGAGTGTAGAGGGATAGTTAAAGAC 57.358 40.000 0.00 0.00 0.00 3.01
3185 3943 8.783660 AATGAATAGTTGAGTGTAGAGGGATA 57.216 34.615 0.00 0.00 0.00 2.59
3187 3945 8.783660 ATAATGAATAGTTGAGTGTAGAGGGA 57.216 34.615 0.00 0.00 0.00 4.20
3255 4013 3.965292 TTCGTCGAGTAGAATAGGCAG 57.035 47.619 0.00 0.00 0.00 4.85
3264 4022 5.966503 CCAATAGAGAACTTTCGTCGAGTAG 59.033 44.000 0.00 0.00 0.00 2.57
3269 4028 4.434330 GCAACCAATAGAGAACTTTCGTCG 60.434 45.833 0.00 0.00 0.00 5.12
3272 4031 5.613358 AAGCAACCAATAGAGAACTTTCG 57.387 39.130 0.00 0.00 0.00 3.46
3341 4130 5.003160 CACTTGATCCACCAAATCTACACA 58.997 41.667 0.00 0.00 0.00 3.72
3344 4133 5.491982 AGACACTTGATCCACCAAATCTAC 58.508 41.667 0.00 0.00 0.00 2.59
3359 4148 8.854979 TGAAATAACAATTGTTGAGACACTTG 57.145 30.769 29.72 7.73 46.19 3.16
3361 4150 8.225603 ACTGAAATAACAATTGTTGAGACACT 57.774 30.769 29.72 7.19 38.90 3.55
3362 4151 8.856490 AACTGAAATAACAATTGTTGAGACAC 57.144 30.769 29.72 17.00 38.90 3.67
3373 4164 7.871973 TGCTGTGCAATTAACTGAAATAACAAT 59.128 29.630 0.00 0.00 34.76 2.71
3435 4226 4.914983 TCTGGCTGATGTCAAAAATCTCT 58.085 39.130 0.00 0.00 0.00 3.10
3442 4233 5.129634 TGTTACTTTCTGGCTGATGTCAAA 58.870 37.500 0.00 0.00 0.00 2.69
3445 4236 4.319177 ACTGTTACTTTCTGGCTGATGTC 58.681 43.478 0.00 0.00 0.00 3.06
3463 4254 0.117340 ACCCCAAGAGCCTAGACTGT 59.883 55.000 0.00 0.00 0.00 3.55
3466 4257 2.185387 TGTTACCCCAAGAGCCTAGAC 58.815 52.381 0.00 0.00 0.00 2.59
3467 4258 2.634639 TGTTACCCCAAGAGCCTAGA 57.365 50.000 0.00 0.00 0.00 2.43
3468 4259 2.771943 TGATGTTACCCCAAGAGCCTAG 59.228 50.000 0.00 0.00 0.00 3.02
3469 4260 2.504175 GTGATGTTACCCCAAGAGCCTA 59.496 50.000 0.00 0.00 0.00 3.93
3470 4261 1.282157 GTGATGTTACCCCAAGAGCCT 59.718 52.381 0.00 0.00 0.00 4.58
3471 4262 1.682087 GGTGATGTTACCCCAAGAGCC 60.682 57.143 0.00 0.00 34.56 4.70
3472 4263 1.282157 AGGTGATGTTACCCCAAGAGC 59.718 52.381 0.00 0.00 41.83 4.09
3473 4264 3.347216 CAAGGTGATGTTACCCCAAGAG 58.653 50.000 0.00 0.00 41.83 2.85
3474 4265 2.554344 GCAAGGTGATGTTACCCCAAGA 60.554 50.000 0.00 0.00 41.83 3.02
3475 4266 1.818674 GCAAGGTGATGTTACCCCAAG 59.181 52.381 0.00 0.00 41.83 3.61
3476 4267 1.145945 TGCAAGGTGATGTTACCCCAA 59.854 47.619 0.00 0.00 41.83 4.12
3477 4268 0.774276 TGCAAGGTGATGTTACCCCA 59.226 50.000 0.00 0.00 41.83 4.96
3478 4269 1.750778 CATGCAAGGTGATGTTACCCC 59.249 52.381 0.00 0.00 41.83 4.95
3481 4272 3.127548 CACTCCATGCAAGGTGATGTTAC 59.872 47.826 16.35 0.00 32.12 2.50
3482 4273 3.008923 TCACTCCATGCAAGGTGATGTTA 59.991 43.478 16.35 0.00 34.38 2.41
3483 4274 2.165167 CACTCCATGCAAGGTGATGTT 58.835 47.619 16.35 0.00 32.12 2.71
3485 4276 2.118313 TCACTCCATGCAAGGTGATG 57.882 50.000 16.35 10.55 34.38 3.07
3499 4345 1.470098 ACGCATTCTGGCAATTCACTC 59.530 47.619 0.00 0.00 0.00 3.51
3508 4354 1.349627 CACATCGACGCATTCTGGC 59.650 57.895 0.00 0.00 0.00 4.85
3510 4356 0.654160 ATGCACATCGACGCATTCTG 59.346 50.000 11.82 0.00 46.49 3.02
3515 4361 0.389166 TACACATGCACATCGACGCA 60.389 50.000 8.28 8.28 43.45 5.24
3516 4362 0.930310 ATACACATGCACATCGACGC 59.070 50.000 0.00 0.00 0.00 5.19
3517 4363 4.972286 AATATACACATGCACATCGACG 57.028 40.909 0.00 0.00 0.00 5.12
3558 4411 9.083422 ACAGATAAATAGCTGAGCAAGAGTATA 57.917 33.333 7.39 0.00 41.99 1.47
3561 4414 6.098124 AGACAGATAAATAGCTGAGCAAGAGT 59.902 38.462 7.39 0.00 41.99 3.24
3588 4441 5.532032 CACCCTGCATCATGTACATAAATCA 59.468 40.000 8.32 4.22 0.00 2.57
3590 4443 5.300034 CACACCCTGCATCATGTACATAAAT 59.700 40.000 8.32 2.57 0.00 1.40
3597 4450 3.173540 GCACACCCTGCATCATGTA 57.826 52.632 0.00 0.00 46.29 2.29
3598 4451 4.007457 GCACACCCTGCATCATGT 57.993 55.556 0.00 0.00 46.29 3.21
3701 4554 1.419762 TGCAAGCAAGGTAGTGAAGGA 59.580 47.619 0.00 0.00 0.00 3.36
3716 4569 3.005554 CCTCTTACCACTCATGTGCAAG 58.994 50.000 0.00 0.00 42.54 4.01
3722 4575 4.641396 TGTTTCACCTCTTACCACTCATG 58.359 43.478 0.00 0.00 0.00 3.07
3750 4603 6.486993 AGTTCCTTCAACCTCACTATTCAAAC 59.513 38.462 0.00 0.00 35.28 2.93
3774 4627 7.592938 TGTCATGTCCAGCATTAAAAAGTTAG 58.407 34.615 0.00 0.00 35.19 2.34
3777 4630 6.403866 TTGTCATGTCCAGCATTAAAAAGT 57.596 33.333 0.00 0.00 35.19 2.66
3778 4631 7.599621 TCATTTGTCATGTCCAGCATTAAAAAG 59.400 33.333 0.00 0.00 35.19 2.27
3783 4636 6.406065 CCATTCATTTGTCATGTCCAGCATTA 60.406 38.462 0.00 0.00 35.19 1.90
3784 4637 5.416083 CATTCATTTGTCATGTCCAGCATT 58.584 37.500 0.00 0.00 35.19 3.56
3786 4639 3.193903 CCATTCATTTGTCATGTCCAGCA 59.806 43.478 0.00 0.00 0.00 4.41
3787 4640 3.444742 TCCATTCATTTGTCATGTCCAGC 59.555 43.478 0.00 0.00 0.00 4.85
3788 4641 5.648178 TTCCATTCATTTGTCATGTCCAG 57.352 39.130 0.00 0.00 0.00 3.86
3789 4642 5.047164 CCTTTCCATTCATTTGTCATGTCCA 60.047 40.000 0.00 0.00 0.00 4.02
3790 4643 5.185635 TCCTTTCCATTCATTTGTCATGTCC 59.814 40.000 0.00 0.00 0.00 4.02
3798 4651 6.088016 TGTTGTCTCCTTTCCATTCATTTG 57.912 37.500 0.00 0.00 0.00 2.32
3802 4655 8.421249 AAAATATGTTGTCTCCTTTCCATTCA 57.579 30.769 0.00 0.00 0.00 2.57
3806 4659 8.602424 TCTAGAAAATATGTTGTCTCCTTTCCA 58.398 33.333 0.00 0.00 33.85 3.53
3807 4660 9.449719 TTCTAGAAAATATGTTGTCTCCTTTCC 57.550 33.333 1.68 0.00 33.85 3.13
3852 4705 7.445402 TCGAAGAATGAATGAAGGAAAGAAAGT 59.555 33.333 0.00 0.00 0.00 2.66
3862 4715 6.898912 TGAGTCATCGAAGAATGAATGAAG 57.101 37.500 0.00 0.00 43.58 3.02
3864 4717 7.671495 TTTTGAGTCATCGAAGAATGAATGA 57.329 32.000 0.00 0.00 43.58 2.57
3870 4723 8.103948 ACAGAAATTTTGAGTCATCGAAGAAT 57.896 30.769 0.00 0.00 43.58 2.40
3876 4729 7.684062 AAACAACAGAAATTTTGAGTCATCG 57.316 32.000 0.00 0.00 0.00 3.84
3884 4737 9.837525 TCCAAAATCAAAACAACAGAAATTTTG 57.162 25.926 9.53 9.53 42.21 2.44
3886 4739 9.838975 GTTCCAAAATCAAAACAACAGAAATTT 57.161 25.926 0.00 0.00 0.00 1.82
3894 4747 5.872070 TCCACTGTTCCAAAATCAAAACAAC 59.128 36.000 0.00 0.00 31.75 3.32
3905 4758 3.541632 GTCTTGACTCCACTGTTCCAAA 58.458 45.455 0.00 0.00 0.00 3.28
3931 4784 1.810030 GGCAGTCGATCCACCGTTC 60.810 63.158 0.00 0.00 0.00 3.95
3940 4793 1.361993 GATCTCGCAGGCAGTCGAT 59.638 57.895 0.00 0.00 33.98 3.59
3958 4811 1.630369 TCCTCATGGTGGAACAAGAGG 59.370 52.381 9.30 9.30 45.89 3.69
3991 4844 3.129813 TGCCAATCTTTGCAAGCTCATAG 59.870 43.478 0.00 0.00 33.87 2.23
3998 4851 2.264813 CCGAATGCCAATCTTTGCAAG 58.735 47.619 0.00 0.00 41.50 4.01
4000 4853 0.108709 GCCGAATGCCAATCTTTGCA 60.109 50.000 0.00 0.00 42.52 4.08
4063 4916 0.548031 CCCTGGCTTTCTGATAGGCA 59.452 55.000 19.89 19.89 44.74 4.75
4120 4973 0.320421 CGACCTTGGTGTTGATCCGT 60.320 55.000 0.00 0.00 0.00 4.69
4168 5021 4.717877 TGATGTCTGATTGGTCACTGTTT 58.282 39.130 0.00 0.00 0.00 2.83
4180 5033 1.764723 TCGGCTTCCATGATGTCTGAT 59.235 47.619 0.00 0.00 0.00 2.90
4181 5034 1.194218 TCGGCTTCCATGATGTCTGA 58.806 50.000 0.00 0.00 0.00 3.27
4182 5035 1.938577 CTTCGGCTTCCATGATGTCTG 59.061 52.381 0.00 0.00 0.00 3.51
4195 5048 1.048601 TCACAGGTTTCTCTTCGGCT 58.951 50.000 0.00 0.00 0.00 5.52
4222 5075 1.648467 GCACAAGGAACCTCGCCATC 61.648 60.000 0.00 0.00 0.00 3.51
4258 5111 2.799017 TGGTCGAGAGTACAGGCTAAA 58.201 47.619 0.00 0.00 0.00 1.85
4264 5117 0.173708 GCCCTTGGTCGAGAGTACAG 59.826 60.000 0.00 0.00 0.00 2.74
4312 5165 1.826054 CCCCACAAACTTCCGTGCA 60.826 57.895 0.00 0.00 0.00 4.57
4320 5173 0.779997 ATTCCTCTGCCCCACAAACT 59.220 50.000 0.00 0.00 0.00 2.66
4367 5220 1.680207 GCAAATTGGCTCAGAGGATCC 59.320 52.381 2.48 2.48 33.66 3.36
4368 5221 1.332997 CGCAAATTGGCTCAGAGGATC 59.667 52.381 2.72 0.00 0.00 3.36
4398 5251 3.378512 ACAGTTAGCCAGATCATCTCCA 58.621 45.455 0.00 0.00 0.00 3.86
4435 5288 1.355381 ACCAATGTCCTTCATCTGCCA 59.645 47.619 0.00 0.00 35.48 4.92
4473 5326 0.825840 CTCTCCCTCTCCCATCGACC 60.826 65.000 0.00 0.00 0.00 4.79
4476 5329 2.206536 GCCTCTCCCTCTCCCATCG 61.207 68.421 0.00 0.00 0.00 3.84
4481 5334 2.726351 CCGTTGCCTCTCCCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
4639 5504 3.392285 TGGAAGAGCCACTGCATACATAT 59.608 43.478 0.00 0.00 43.33 1.78
4705 5574 7.490402 GCATTTTTGTACTAGTATGTACGGAGT 59.510 37.037 5.75 6.20 44.01 3.85
4706 5575 7.490079 TGCATTTTTGTACTAGTATGTACGGAG 59.510 37.037 5.75 0.00 44.01 4.63
4707 5576 7.321908 TGCATTTTTGTACTAGTATGTACGGA 58.678 34.615 5.75 0.00 44.01 4.69
4708 5577 7.528481 TGCATTTTTGTACTAGTATGTACGG 57.472 36.000 5.75 0.00 44.01 4.02
4709 5578 9.982291 AAATGCATTTTTGTACTAGTATGTACG 57.018 29.630 18.99 0.00 44.01 3.67
4745 5615 6.707440 AAGTGAATGTTTTGTACCACATCA 57.293 33.333 3.61 2.37 32.21 3.07
4783 5936 0.248661 CAGTGTATCGCCTCTGACCG 60.249 60.000 0.00 0.00 0.00 4.79
4812 5967 6.711277 ACTACTTCATCCATGAGTAAGCAAA 58.289 36.000 0.00 0.00 38.19 3.68
4813 5968 6.299805 ACTACTTCATCCATGAGTAAGCAA 57.700 37.500 0.00 0.00 38.19 3.91
4814 5969 5.939764 ACTACTTCATCCATGAGTAAGCA 57.060 39.130 0.00 0.00 38.19 3.91
4815 5970 7.278461 TCTACTACTTCATCCATGAGTAAGC 57.722 40.000 0.00 0.00 38.19 3.09
4818 5973 8.144478 GCAAATCTACTACTTCATCCATGAGTA 58.856 37.037 0.00 0.00 38.19 2.59
4819 5974 6.989169 GCAAATCTACTACTTCATCCATGAGT 59.011 38.462 0.00 0.00 38.19 3.41
4820 5975 7.215789 AGCAAATCTACTACTTCATCCATGAG 58.784 38.462 0.00 0.00 38.19 2.90
4821 5976 7.129457 AGCAAATCTACTACTTCATCCATGA 57.871 36.000 0.00 0.00 34.44 3.07
4822 5977 8.933807 CATAGCAAATCTACTACTTCATCCATG 58.066 37.037 0.00 0.00 0.00 3.66
4823 5978 8.099537 CCATAGCAAATCTACTACTTCATCCAT 58.900 37.037 0.00 0.00 0.00 3.41
4824 5979 7.071196 ACCATAGCAAATCTACTACTTCATCCA 59.929 37.037 0.00 0.00 0.00 3.41
4825 5980 7.445945 ACCATAGCAAATCTACTACTTCATCC 58.554 38.462 0.00 0.00 0.00 3.51
4826 5981 8.894768 AACCATAGCAAATCTACTACTTCATC 57.105 34.615 0.00 0.00 0.00 2.92
4827 5982 8.486210 TGAACCATAGCAAATCTACTACTTCAT 58.514 33.333 0.00 0.00 0.00 2.57
4828 5983 7.847096 TGAACCATAGCAAATCTACTACTTCA 58.153 34.615 0.00 0.00 0.00 3.02
4829 5984 8.718102 TTGAACCATAGCAAATCTACTACTTC 57.282 34.615 0.00 0.00 0.00 3.01
4830 5985 9.113838 CATTGAACCATAGCAAATCTACTACTT 57.886 33.333 0.00 0.00 0.00 2.24
4831 5986 7.227512 GCATTGAACCATAGCAAATCTACTACT 59.772 37.037 0.00 0.00 0.00 2.57
4832 5987 7.227512 AGCATTGAACCATAGCAAATCTACTAC 59.772 37.037 0.00 0.00 0.00 2.73
4833 5988 7.282585 AGCATTGAACCATAGCAAATCTACTA 58.717 34.615 0.00 0.00 0.00 1.82
4834 5989 6.125029 AGCATTGAACCATAGCAAATCTACT 58.875 36.000 0.00 0.00 0.00 2.57
4835 5990 6.382869 AGCATTGAACCATAGCAAATCTAC 57.617 37.500 0.00 0.00 0.00 2.59
4836 5991 6.830324 AGAAGCATTGAACCATAGCAAATCTA 59.170 34.615 0.00 0.00 0.00 1.98
4837 5992 5.655532 AGAAGCATTGAACCATAGCAAATCT 59.344 36.000 0.00 0.00 0.00 2.40
4838 5993 5.747197 CAGAAGCATTGAACCATAGCAAATC 59.253 40.000 0.00 0.00 0.00 2.17
4839 5994 5.186409 ACAGAAGCATTGAACCATAGCAAAT 59.814 36.000 0.00 0.00 0.00 2.32
4978 6212 6.096705 TGGATCATTTTACTGGCCTGTATTTG 59.903 38.462 21.67 17.86 0.00 2.32
5042 6276 4.469657 ACAATCAGTTTTAGACCAGCCAA 58.530 39.130 0.00 0.00 0.00 4.52
5047 6281 6.119536 ACTGTGAACAATCAGTTTTAGACCA 58.880 36.000 0.00 0.00 41.33 4.02
5113 6347 1.431440 GCTTTGGTGAACACGCACA 59.569 52.632 0.00 0.00 40.52 4.57
5198 6432 9.912634 TTTAGCCAATTGACTTATCTTTTGAAG 57.087 29.630 7.12 0.00 0.00 3.02
5201 6435 9.474920 TTGTTTAGCCAATTGACTTATCTTTTG 57.525 29.630 7.12 0.00 0.00 2.44
5277 6511 8.192110 ACAATCGTCTCTATCTTACTTTCCTTC 58.808 37.037 0.00 0.00 0.00 3.46
5300 6534 2.507886 TGTGAGTGGGGAAAGAAGACAA 59.492 45.455 0.00 0.00 0.00 3.18
5301 6535 2.123589 TGTGAGTGGGGAAAGAAGACA 58.876 47.619 0.00 0.00 0.00 3.41
5307 6541 3.346426 CCCTTGTGAGTGGGGAAAG 57.654 57.895 0.00 0.00 42.58 2.62
5312 6546 0.905357 CTAGTCCCCTTGTGAGTGGG 59.095 60.000 0.00 0.00 42.98 4.61
5313 6547 0.905357 CCTAGTCCCCTTGTGAGTGG 59.095 60.000 0.00 0.00 0.00 4.00
5314 6548 0.905357 CCCTAGTCCCCTTGTGAGTG 59.095 60.000 0.00 0.00 0.00 3.51
5315 6549 0.790993 TCCCTAGTCCCCTTGTGAGT 59.209 55.000 0.00 0.00 0.00 3.41
5325 6560 1.916874 AGGAAGGCTTTTCCCTAGTCC 59.083 52.381 14.38 0.00 39.39 3.85
5327 6562 1.916874 GGAGGAAGGCTTTTCCCTAGT 59.083 52.381 16.65 0.00 39.39 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.