Multiple sequence alignment - TraesCS6A01G082000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G082000 chr6A 100.000 3251 0 0 1 3251 50867134 50863884 0.000000e+00 6004.0
1 TraesCS6A01G082000 chr6A 94.992 1797 64 7 858 2640 50466285 50464501 0.000000e+00 2796.0
2 TraesCS6A01G082000 chr6A 94.992 1797 61 9 858 2640 50409690 50407909 0.000000e+00 2793.0
3 TraesCS6A01G082000 chr6A 95.977 1392 39 5 890 2265 50250636 50249246 0.000000e+00 2244.0
4 TraesCS6A01G082000 chr6A 96.326 626 18 1 2631 3251 71070243 71070868 0.000000e+00 1024.0
5 TraesCS6A01G082000 chr6A 94.416 197 10 1 2260 2456 50206594 50206399 5.270000e-78 302.0
6 TraesCS6A01G082000 chr6A 85.837 233 16 4 66 298 50251220 50251005 7.010000e-57 231.0
7 TraesCS6A01G082000 chr6A 96.078 102 4 0 2485 2586 50198229 50198128 2.010000e-37 167.0
8 TraesCS6A01G082000 chr6A 94.340 53 2 1 843 895 50250945 50250894 2.690000e-11 80.5
9 TraesCS6A01G082000 chr6A 97.500 40 1 0 1 40 50251259 50251220 5.820000e-08 69.4
10 TraesCS6A01G082000 chrUn 93.318 1751 74 10 851 2596 114233588 114235300 0.000000e+00 2545.0
11 TraesCS6A01G082000 chrUn 93.380 287 17 2 297 582 374675672 374675957 1.080000e-114 424.0
12 TraesCS6A01G082000 chrUn 92.708 288 19 2 299 585 222081951 222081665 6.490000e-112 414.0
13 TraesCS6A01G082000 chrUn 79.186 221 30 6 72 291 250047012 250046807 4.370000e-29 139.0
14 TraesCS6A01G082000 chrUn 79.186 221 30 6 72 291 261083992 261083787 4.370000e-29 139.0
15 TraesCS6A01G082000 chrUn 94.545 55 3 0 2583 2637 114235318 114235372 5.780000e-13 86.1
16 TraesCS6A01G082000 chr2A 93.323 629 33 5 2631 3251 764256503 764255876 0.000000e+00 920.0
17 TraesCS6A01G082000 chr2A 78.610 374 66 11 1990 2353 535413391 535413760 5.420000e-58 235.0
18 TraesCS6A01G082000 chr5B 82.810 605 87 16 2631 3226 41946641 41947237 2.870000e-145 525.0
19 TraesCS6A01G082000 chr5B 85.714 91 8 4 601 689 549098610 549098697 1.240000e-14 91.6
20 TraesCS6A01G082000 chr7B 94.040 302 13 1 2955 3251 621468083 621467782 1.380000e-123 453.0
21 TraesCS6A01G082000 chr7B 89.297 327 18 10 2629 2949 621468751 621468436 8.450000e-106 394.0
22 TraesCS6A01G082000 chr7B 76.543 243 48 9 2117 2356 374530226 374530462 1.220000e-24 124.0
23 TraesCS6A01G082000 chr7B 90.909 55 5 0 7 61 39929265 39929319 1.250000e-09 75.0
24 TraesCS6A01G082000 chr3B 86.797 409 45 8 2822 3226 84739386 84739789 6.400000e-122 448.0
25 TraesCS6A01G082000 chr3B 93.684 285 16 2 299 582 826969759 826970042 3.000000e-115 425.0
26 TraesCS6A01G082000 chr3B 93.103 290 17 3 297 585 769227990 769227703 3.880000e-114 422.0
27 TraesCS6A01G082000 chr3B 92.440 291 20 2 299 588 63669449 63669160 6.490000e-112 414.0
28 TraesCS6A01G082000 chr3B 88.136 59 7 0 7 65 8511636 8511694 1.620000e-08 71.3
29 TraesCS6A01G082000 chr3B 88.136 59 5 2 2631 2688 60379275 60379218 5.820000e-08 69.4
30 TraesCS6A01G082000 chr7D 93.357 286 16 3 298 582 7536814 7537097 1.390000e-113 420.0
31 TraesCS6A01G082000 chr7D 93.056 288 17 3 299 585 597406946 597406661 5.020000e-113 418.0
32 TraesCS6A01G082000 chr7D 88.462 338 35 4 2876 3211 106314302 106314637 3.910000e-109 405.0
33 TraesCS6A01G082000 chr7D 87.719 57 6 1 2631 2687 201165712 201165767 7.530000e-07 65.8
34 TraesCS6A01G082000 chr6B 93.929 280 14 3 299 576 560663939 560664217 1.390000e-113 420.0
35 TraesCS6A01G082000 chr4A 92.683 287 19 2 297 582 602865302 602865587 2.330000e-111 412.0
36 TraesCS6A01G082000 chr4A 81.416 226 40 2 2126 2350 687627012 687626788 1.990000e-42 183.0
37 TraesCS6A01G082000 chr4A 80.973 226 41 2 2126 2350 687660835 687660611 9.270000e-41 178.0
38 TraesCS6A01G082000 chr4A 81.858 226 25 5 69 293 17747853 17747643 3.330000e-40 176.0
39 TraesCS6A01G082000 chr4A 80.531 226 42 2 2126 2350 687706550 687706326 4.310000e-39 172.0
40 TraesCS6A01G082000 chr4A 88.679 53 4 1 1984 2034 687627160 687627108 2.710000e-06 63.9
41 TraesCS6A01G082000 chr4A 79.775 89 16 1 1984 2070 687660983 687660895 2.710000e-06 63.9
42 TraesCS6A01G082000 chr4A 79.775 89 16 1 1984 2070 687706698 687706610 2.710000e-06 63.9
43 TraesCS6A01G082000 chr5D 88.131 337 36 3 2876 3211 343101607 343101940 6.540000e-107 398.0
44 TraesCS6A01G082000 chr3A 85.674 356 47 4 2876 3229 514557018 514556665 3.960000e-99 372.0
45 TraesCS6A01G082000 chr3A 87.719 57 6 1 2631 2687 37649012 37649067 7.530000e-07 65.8
46 TraesCS6A01G082000 chr3A 94.595 37 1 1 7 43 118545960 118545995 4.530000e-04 56.5
47 TraesCS6A01G082000 chr2D 86.103 331 44 2 2882 3211 6077458 6077129 3.990000e-94 355.0
48 TraesCS6A01G082000 chr2D 88.679 106 12 0 585 690 50894612 50894717 2.630000e-26 130.0
49 TraesCS6A01G082000 chr2D 85.965 57 6 2 2635 2691 101436380 101436326 3.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G082000 chr6A 50863884 50867134 3250 True 6004.000 6004 100.0000 1 3251 1 chr6A.!!$R5 3250
1 TraesCS6A01G082000 chr6A 50464501 50466285 1784 True 2796.000 2796 94.9920 858 2640 1 chr6A.!!$R4 1782
2 TraesCS6A01G082000 chr6A 50407909 50409690 1781 True 2793.000 2793 94.9920 858 2640 1 chr6A.!!$R3 1782
3 TraesCS6A01G082000 chr6A 71070243 71070868 625 False 1024.000 1024 96.3260 2631 3251 1 chr6A.!!$F1 620
4 TraesCS6A01G082000 chr6A 50249246 50251259 2013 True 656.225 2244 93.4135 1 2265 4 chr6A.!!$R6 2264
5 TraesCS6A01G082000 chrUn 114233588 114235372 1784 False 1315.550 2545 93.9315 851 2637 2 chrUn.!!$F2 1786
6 TraesCS6A01G082000 chr2A 764255876 764256503 627 True 920.000 920 93.3230 2631 3251 1 chr2A.!!$R1 620
7 TraesCS6A01G082000 chr5B 41946641 41947237 596 False 525.000 525 82.8100 2631 3226 1 chr5B.!!$F1 595
8 TraesCS6A01G082000 chr7B 621467782 621468751 969 True 423.500 453 91.6685 2629 3251 2 chr7B.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.031585 TGCACGTACTGACCAGTGTC 59.968 55.0 12.54 5.31 42.52 3.67 F
296 297 0.039035 GTGTGGTGGGGAGCCAATAA 59.961 55.0 0.00 0.00 37.81 1.40 F
337 338 0.042731 TAGGCTTAGGTGCACCTCCT 59.957 55.0 41.00 37.26 44.77 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2049 0.179097 GCTCACCATCTCGTCTTCCC 60.179 60.000 0.0 0.0 0.00 3.97 R
2234 2518 3.118112 ACGGCATCATCTTGATCTCCTTT 60.118 43.478 0.0 0.0 34.28 3.11 R
2350 2636 1.152383 GACGCCACTATTTCCCTCGC 61.152 60.000 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.892425 GACCGGCCGAGCATTCAG 60.892 66.667 30.73 9.82 0.00 3.02
64 65 3.690280 CGCCCGCCCCAAACATTT 61.690 61.111 0.00 0.00 0.00 2.32
65 66 2.344203 CGCCCGCCCCAAACATTTA 61.344 57.895 0.00 0.00 0.00 1.40
83 84 7.759489 ACATTTACCTTTCAGCAAACTCATA 57.241 32.000 0.00 0.00 0.00 2.15
84 85 8.353423 ACATTTACCTTTCAGCAAACTCATAT 57.647 30.769 0.00 0.00 0.00 1.78
100 101 4.394300 ACTCATATTGAAGTGCTCTTGTGC 59.606 41.667 5.61 0.00 33.64 4.57
101 102 4.325972 TCATATTGAAGTGCTCTTGTGCA 58.674 39.130 5.61 0.00 41.05 4.57
109 110 6.514947 TGAAGTGCTCTTGTGCAATAATTTT 58.485 32.000 5.61 0.00 45.12 1.82
185 186 7.897575 TTTGCAGTAAACTCAACATTTTTGT 57.102 28.000 0.00 0.00 0.00 2.83
186 187 6.884096 TGCAGTAAACTCAACATTTTTGTG 57.116 33.333 0.00 0.00 0.00 3.33
187 188 5.290643 TGCAGTAAACTCAACATTTTTGTGC 59.709 36.000 0.00 0.00 0.00 4.57
188 189 5.290643 GCAGTAAACTCAACATTTTTGTGCA 59.709 36.000 0.00 0.00 0.00 4.57
189 190 6.183360 GCAGTAAACTCAACATTTTTGTGCAA 60.183 34.615 0.00 0.00 0.00 4.08
190 191 7.465781 GCAGTAAACTCAACATTTTTGTGCAAT 60.466 33.333 0.00 0.00 0.00 3.56
191 192 8.389603 CAGTAAACTCAACATTTTTGTGCAATT 58.610 29.630 0.00 0.00 0.00 2.32
192 193 9.593134 AGTAAACTCAACATTTTTGTGCAATTA 57.407 25.926 0.00 0.00 0.00 1.40
193 194 9.848172 GTAAACTCAACATTTTTGTGCAATTAG 57.152 29.630 0.00 0.00 0.00 1.73
194 195 7.481275 AACTCAACATTTTTGTGCAATTAGG 57.519 32.000 0.00 0.00 0.00 2.69
199 200 5.911752 ACATTTTTGTGCAATTAGGTGTGA 58.088 33.333 0.00 0.00 0.00 3.58
206 207 8.531622 TTTGTGCAATTAGGTGTGAAATTATG 57.468 30.769 0.00 0.00 0.00 1.90
255 256 1.459592 GAACACATGCACGTACTGACC 59.540 52.381 0.00 0.00 0.00 4.02
256 257 0.391228 ACACATGCACGTACTGACCA 59.609 50.000 0.00 0.00 0.00 4.02
257 258 1.070821 CACATGCACGTACTGACCAG 58.929 55.000 0.00 0.00 0.00 4.00
258 259 0.679505 ACATGCACGTACTGACCAGT 59.320 50.000 7.86 7.86 45.02 4.00
259 260 1.070821 CATGCACGTACTGACCAGTG 58.929 55.000 12.54 0.00 42.52 3.66
260 261 0.679505 ATGCACGTACTGACCAGTGT 59.320 50.000 12.54 0.58 42.52 3.55
261 262 0.031585 TGCACGTACTGACCAGTGTC 59.968 55.000 12.54 5.31 42.52 3.67
289 290 3.309296 ACTCTATATGTGTGGTGGGGAG 58.691 50.000 0.00 0.00 0.00 4.30
291 292 1.072331 CTATATGTGTGGTGGGGAGCC 59.928 57.143 0.00 0.00 0.00 4.70
292 293 0.918799 ATATGTGTGGTGGGGAGCCA 60.919 55.000 0.00 0.00 0.00 4.75
293 294 1.136961 TATGTGTGGTGGGGAGCCAA 61.137 55.000 0.00 0.00 37.81 4.52
294 295 1.803453 ATGTGTGGTGGGGAGCCAAT 61.803 55.000 0.00 0.00 37.81 3.16
295 296 1.136961 TGTGTGGTGGGGAGCCAATA 61.137 55.000 0.00 0.00 37.81 1.90
296 297 0.039035 GTGTGGTGGGGAGCCAATAA 59.961 55.000 0.00 0.00 37.81 1.40
297 298 1.006813 TGTGGTGGGGAGCCAATAAT 58.993 50.000 0.00 0.00 37.81 1.28
298 299 1.341877 TGTGGTGGGGAGCCAATAATG 60.342 52.381 0.00 0.00 37.81 1.90
321 322 5.066593 GGAAAATATCCTGTGGAGCTTAGG 58.933 45.833 0.00 0.00 45.56 2.69
322 323 3.778954 AATATCCTGTGGAGCTTAGGC 57.221 47.619 0.00 0.00 34.05 3.93
324 325 9.969074 GGAAAATATCCTGTGGAGCTTAGGCTT 62.969 44.444 0.00 0.00 46.42 4.35
333 334 2.781911 GCTTAGGCTTAGGTGCACC 58.218 57.895 29.22 29.22 35.22 5.01
334 335 0.253327 GCTTAGGCTTAGGTGCACCT 59.747 55.000 38.92 38.92 41.73 4.00
335 336 1.744114 GCTTAGGCTTAGGTGCACCTC 60.744 57.143 41.00 26.33 40.36 3.85
336 337 0.909623 TTAGGCTTAGGTGCACCTCC 59.090 55.000 41.00 33.24 44.77 4.30
337 338 0.042731 TAGGCTTAGGTGCACCTCCT 59.957 55.000 41.00 37.26 44.77 3.69
338 339 0.842467 AGGCTTAGGTGCACCTCCTT 60.842 55.000 41.00 23.11 44.77 3.36
339 340 0.909623 GGCTTAGGTGCACCTCCTTA 59.090 55.000 41.00 22.04 44.77 2.69
340 341 1.490910 GGCTTAGGTGCACCTCCTTAT 59.509 52.381 41.00 19.82 44.77 1.73
341 342 2.485657 GGCTTAGGTGCACCTCCTTATC 60.486 54.545 41.00 22.91 44.77 1.75
342 343 2.436173 GCTTAGGTGCACCTCCTTATCT 59.564 50.000 41.00 18.25 44.77 1.98
343 344 3.641906 GCTTAGGTGCACCTCCTTATCTA 59.358 47.826 41.00 19.20 44.77 1.98
344 345 4.262249 GCTTAGGTGCACCTCCTTATCTAG 60.262 50.000 41.00 23.49 44.77 2.43
345 346 2.043227 AGGTGCACCTCCTTATCTAGC 58.957 52.381 33.20 2.40 44.77 3.42
346 347 1.070914 GGTGCACCTCCTTATCTAGCC 59.929 57.143 29.12 0.00 0.00 3.93
347 348 1.762957 GTGCACCTCCTTATCTAGCCA 59.237 52.381 5.22 0.00 0.00 4.75
348 349 2.370189 GTGCACCTCCTTATCTAGCCAT 59.630 50.000 5.22 0.00 0.00 4.40
349 350 3.048600 TGCACCTCCTTATCTAGCCATT 58.951 45.455 0.00 0.00 0.00 3.16
350 351 3.071602 TGCACCTCCTTATCTAGCCATTC 59.928 47.826 0.00 0.00 0.00 2.67
351 352 3.071602 GCACCTCCTTATCTAGCCATTCA 59.928 47.826 0.00 0.00 0.00 2.57
352 353 4.263243 GCACCTCCTTATCTAGCCATTCAT 60.263 45.833 0.00 0.00 0.00 2.57
353 354 5.486526 CACCTCCTTATCTAGCCATTCATC 58.513 45.833 0.00 0.00 0.00 2.92
354 355 5.248020 CACCTCCTTATCTAGCCATTCATCT 59.752 44.000 0.00 0.00 0.00 2.90
355 356 6.438741 CACCTCCTTATCTAGCCATTCATCTA 59.561 42.308 0.00 0.00 0.00 1.98
356 357 7.125507 CACCTCCTTATCTAGCCATTCATCTAT 59.874 40.741 0.00 0.00 0.00 1.98
357 358 7.125507 ACCTCCTTATCTAGCCATTCATCTATG 59.874 40.741 0.00 0.00 0.00 2.23
358 359 7.125507 CCTCCTTATCTAGCCATTCATCTATGT 59.874 40.741 0.00 0.00 0.00 2.29
359 360 9.194972 CTCCTTATCTAGCCATTCATCTATGTA 57.805 37.037 0.00 0.00 0.00 2.29
360 361 9.720874 TCCTTATCTAGCCATTCATCTATGTAT 57.279 33.333 0.00 0.00 0.00 2.29
361 362 9.979578 CCTTATCTAGCCATTCATCTATGTATC 57.020 37.037 0.00 0.00 0.00 2.24
362 363 9.676195 CTTATCTAGCCATTCATCTATGTATCG 57.324 37.037 0.00 0.00 0.00 2.92
363 364 5.895928 TCTAGCCATTCATCTATGTATCGC 58.104 41.667 0.00 0.00 0.00 4.58
364 365 3.515630 AGCCATTCATCTATGTATCGCG 58.484 45.455 0.00 0.00 29.78 5.87
365 366 3.193479 AGCCATTCATCTATGTATCGCGA 59.807 43.478 13.09 13.09 29.78 5.87
366 367 4.115516 GCCATTCATCTATGTATCGCGAT 58.884 43.478 26.78 26.78 0.00 4.58
367 368 4.568359 GCCATTCATCTATGTATCGCGATT 59.432 41.667 28.81 12.27 0.00 3.34
368 369 5.276584 GCCATTCATCTATGTATCGCGATTC 60.277 44.000 28.81 22.74 0.00 2.52
369 370 5.052106 CCATTCATCTATGTATCGCGATTCG 60.052 44.000 28.81 9.72 40.15 3.34
381 382 3.657537 CGATTCGCGCAAGAACTTT 57.342 47.368 8.75 0.00 43.02 2.66
382 383 1.950472 CGATTCGCGCAAGAACTTTT 58.050 45.000 8.75 0.00 43.02 2.27
383 384 1.898709 CGATTCGCGCAAGAACTTTTC 59.101 47.619 8.75 0.00 43.02 2.29
384 385 2.411547 CGATTCGCGCAAGAACTTTTCT 60.412 45.455 8.75 0.00 43.15 2.52
385 386 2.663279 TTCGCGCAAGAACTTTTCTC 57.337 45.000 8.75 0.00 39.61 2.87
386 387 1.865865 TCGCGCAAGAACTTTTCTCT 58.134 45.000 8.75 0.00 39.61 3.10
387 388 2.210116 TCGCGCAAGAACTTTTCTCTT 58.790 42.857 8.75 0.00 39.61 2.85
388 389 2.612212 TCGCGCAAGAACTTTTCTCTTT 59.388 40.909 8.75 0.00 39.61 2.52
389 390 2.967357 CGCGCAAGAACTTTTCTCTTTC 59.033 45.455 8.75 0.00 39.61 2.62
390 391 3.303395 CGCGCAAGAACTTTTCTCTTTCT 60.303 43.478 8.75 0.00 39.61 2.52
391 392 4.602006 GCGCAAGAACTTTTCTCTTTCTT 58.398 39.130 0.30 0.00 39.61 2.52
398 399 9.631452 CAAGAACTTTTCTCTTTCTTGTTTCTT 57.369 29.630 12.94 0.00 45.89 2.52
400 401 9.847706 AGAACTTTTCTCTTTCTTGTTTCTTTC 57.152 29.630 0.00 0.00 34.07 2.62
401 402 9.626045 GAACTTTTCTCTTTCTTGTTTCTTTCA 57.374 29.630 0.00 0.00 0.00 2.69
402 403 9.981114 AACTTTTCTCTTTCTTGTTTCTTTCAA 57.019 25.926 0.00 0.00 0.00 2.69
403 404 9.981114 ACTTTTCTCTTTCTTGTTTCTTTCAAA 57.019 25.926 0.00 0.00 0.00 2.69
432 433 7.698836 ACAACATATGAACTTCAAACTTTGC 57.301 32.000 10.38 0.00 0.00 3.68
433 434 7.264221 ACAACATATGAACTTCAAACTTTGCA 58.736 30.769 10.38 0.00 0.00 4.08
434 435 7.436080 ACAACATATGAACTTCAAACTTTGCAG 59.564 33.333 10.38 0.17 0.00 4.41
435 436 5.922544 ACATATGAACTTCAAACTTTGCAGC 59.077 36.000 10.38 0.00 0.00 5.25
436 437 3.865011 TGAACTTCAAACTTTGCAGCA 57.135 38.095 0.00 0.00 0.00 4.41
437 438 3.510719 TGAACTTCAAACTTTGCAGCAC 58.489 40.909 0.00 0.00 0.00 4.40
438 439 3.056962 TGAACTTCAAACTTTGCAGCACA 60.057 39.130 0.00 0.00 0.00 4.57
439 440 3.591196 ACTTCAAACTTTGCAGCACAA 57.409 38.095 0.00 0.00 36.13 3.33
440 441 3.514645 ACTTCAAACTTTGCAGCACAAG 58.485 40.909 12.93 12.93 40.06 3.16
441 442 3.193267 ACTTCAAACTTTGCAGCACAAGA 59.807 39.130 18.55 1.11 40.06 3.02
442 443 3.865011 TCAAACTTTGCAGCACAAGAA 57.135 38.095 18.55 1.54 40.06 2.52
443 444 4.185467 TCAAACTTTGCAGCACAAGAAA 57.815 36.364 18.55 1.21 40.06 2.52
444 445 4.564041 TCAAACTTTGCAGCACAAGAAAA 58.436 34.783 18.55 0.58 40.06 2.29
445 446 4.388469 TCAAACTTTGCAGCACAAGAAAAC 59.612 37.500 18.55 0.00 40.06 2.43
446 447 3.591196 ACTTTGCAGCACAAGAAAACA 57.409 38.095 18.55 0.00 40.06 2.83
447 448 4.127566 ACTTTGCAGCACAAGAAAACAT 57.872 36.364 18.55 0.00 40.06 2.71
448 449 4.506758 ACTTTGCAGCACAAGAAAACATT 58.493 34.783 18.55 0.00 40.06 2.71
449 450 4.567959 ACTTTGCAGCACAAGAAAACATTC 59.432 37.500 18.55 0.00 40.06 2.67
450 451 4.389890 TTGCAGCACAAGAAAACATTCT 57.610 36.364 0.00 0.00 33.24 2.40
451 452 5.512753 TTGCAGCACAAGAAAACATTCTA 57.487 34.783 0.00 0.00 33.24 2.10
452 453 5.512753 TGCAGCACAAGAAAACATTCTAA 57.487 34.783 0.00 0.00 0.00 2.10
453 454 6.088016 TGCAGCACAAGAAAACATTCTAAT 57.912 33.333 0.00 0.00 0.00 1.73
454 455 6.514947 TGCAGCACAAGAAAACATTCTAATT 58.485 32.000 0.00 0.00 0.00 1.40
455 456 7.656412 TGCAGCACAAGAAAACATTCTAATTA 58.344 30.769 0.00 0.00 0.00 1.40
456 457 7.809331 TGCAGCACAAGAAAACATTCTAATTAG 59.191 33.333 6.11 6.11 0.00 1.73
457 458 8.023128 GCAGCACAAGAAAACATTCTAATTAGA 58.977 33.333 11.24 11.24 0.00 2.10
458 459 9.897744 CAGCACAAGAAAACATTCTAATTAGAA 57.102 29.630 26.04 26.04 45.43 2.10
555 556 9.825109 TCTCATTTTGTATATTTATGTCGGTCA 57.175 29.630 0.00 0.00 0.00 4.02
596 597 8.687824 TTTTTCTCTCACTGAAAATTTCACAC 57.312 30.769 4.03 0.00 41.25 3.82
597 598 7.630242 TTTCTCTCACTGAAAATTTCACACT 57.370 32.000 4.03 0.00 35.46 3.55
598 599 6.609237 TCTCTCACTGAAAATTTCACACTG 57.391 37.500 4.03 1.30 35.46 3.66
599 600 6.115446 TCTCTCACTGAAAATTTCACACTGT 58.885 36.000 4.03 0.00 35.46 3.55
600 601 7.272244 TCTCTCACTGAAAATTTCACACTGTA 58.728 34.615 4.03 0.00 35.46 2.74
601 602 7.768582 TCTCTCACTGAAAATTTCACACTGTAA 59.231 33.333 4.03 0.00 35.46 2.41
602 603 7.919690 TCTCACTGAAAATTTCACACTGTAAG 58.080 34.615 4.03 0.00 36.17 2.34
603 604 7.552687 TCTCACTGAAAATTTCACACTGTAAGT 59.447 33.333 4.03 0.00 41.46 2.24
604 605 8.050778 TCACTGAAAATTTCACACTGTAAGTT 57.949 30.769 4.03 0.00 39.65 2.66
605 606 9.168451 TCACTGAAAATTTCACACTGTAAGTTA 57.832 29.630 4.03 0.00 39.65 2.24
606 607 9.438291 CACTGAAAATTTCACACTGTAAGTTAG 57.562 33.333 4.03 0.00 39.65 2.34
607 608 9.174166 ACTGAAAATTTCACACTGTAAGTTAGT 57.826 29.630 4.03 0.00 39.65 2.24
609 610 9.781834 TGAAAATTTCACACTGTAAGTTAGTTG 57.218 29.630 4.03 0.00 39.32 3.16
619 620 5.910637 TGTAAGTTAGTTGTTTAGCACGG 57.089 39.130 0.00 0.00 0.00 4.94
620 621 5.599732 TGTAAGTTAGTTGTTTAGCACGGA 58.400 37.500 0.00 0.00 0.00 4.69
621 622 6.225318 TGTAAGTTAGTTGTTTAGCACGGAT 58.775 36.000 0.00 0.00 0.00 4.18
622 623 5.857822 AAGTTAGTTGTTTAGCACGGATC 57.142 39.130 0.00 0.00 0.00 3.36
623 624 5.148651 AGTTAGTTGTTTAGCACGGATCT 57.851 39.130 0.00 0.00 0.00 2.75
624 625 5.169295 AGTTAGTTGTTTAGCACGGATCTC 58.831 41.667 0.00 0.00 0.00 2.75
625 626 3.678056 AGTTGTTTAGCACGGATCTCA 57.322 42.857 0.00 0.00 0.00 3.27
626 627 4.002906 AGTTGTTTAGCACGGATCTCAA 57.997 40.909 0.00 0.00 0.00 3.02
627 628 4.385825 AGTTGTTTAGCACGGATCTCAAA 58.614 39.130 0.00 0.00 0.00 2.69
628 629 4.452455 AGTTGTTTAGCACGGATCTCAAAG 59.548 41.667 0.00 0.00 0.00 2.77
629 630 2.742053 TGTTTAGCACGGATCTCAAAGC 59.258 45.455 0.00 0.00 0.00 3.51
630 631 3.003480 GTTTAGCACGGATCTCAAAGCT 58.997 45.455 0.00 0.00 36.20 3.74
631 632 4.181578 GTTTAGCACGGATCTCAAAGCTA 58.818 43.478 0.00 0.00 33.83 3.32
632 633 4.672587 TTAGCACGGATCTCAAAGCTAT 57.327 40.909 0.00 0.00 34.89 2.97
633 634 5.784578 TTAGCACGGATCTCAAAGCTATA 57.215 39.130 0.00 0.00 34.89 1.31
634 635 4.881019 AGCACGGATCTCAAAGCTATAT 57.119 40.909 0.00 0.00 0.00 0.86
635 636 5.220710 AGCACGGATCTCAAAGCTATATT 57.779 39.130 0.00 0.00 0.00 1.28
636 637 4.993584 AGCACGGATCTCAAAGCTATATTG 59.006 41.667 0.00 0.00 0.00 1.90
637 638 4.991056 GCACGGATCTCAAAGCTATATTGA 59.009 41.667 0.00 0.00 35.60 2.57
638 639 5.466728 GCACGGATCTCAAAGCTATATTGAA 59.533 40.000 1.25 0.00 36.43 2.69
639 640 6.148480 GCACGGATCTCAAAGCTATATTGAAT 59.852 38.462 1.25 0.00 36.43 2.57
640 641 7.516481 CACGGATCTCAAAGCTATATTGAATG 58.484 38.462 1.25 0.00 36.43 2.67
641 642 6.652481 ACGGATCTCAAAGCTATATTGAATGG 59.348 38.462 1.25 0.00 36.43 3.16
642 643 6.652481 CGGATCTCAAAGCTATATTGAATGGT 59.348 38.462 1.25 0.00 36.43 3.55
643 644 7.819415 CGGATCTCAAAGCTATATTGAATGGTA 59.181 37.037 1.25 0.00 36.43 3.25
644 645 9.678260 GGATCTCAAAGCTATATTGAATGGTAT 57.322 33.333 1.25 0.00 36.43 2.73
660 661 8.966155 TGAATGGTATAGATATAAGGTGTCCA 57.034 34.615 0.00 0.00 0.00 4.02
661 662 9.560860 TGAATGGTATAGATATAAGGTGTCCAT 57.439 33.333 0.00 0.00 34.09 3.41
662 663 9.823647 GAATGGTATAGATATAAGGTGTCCATG 57.176 37.037 0.00 0.00 33.18 3.66
663 664 9.560860 AATGGTATAGATATAAGGTGTCCATGA 57.439 33.333 0.00 0.00 33.18 3.07
664 665 8.595362 TGGTATAGATATAAGGTGTCCATGAG 57.405 38.462 0.00 0.00 0.00 2.90
665 666 7.124298 TGGTATAGATATAAGGTGTCCATGAGC 59.876 40.741 0.00 0.00 0.00 4.26
666 667 4.899352 AGATATAAGGTGTCCATGAGCC 57.101 45.455 0.00 0.00 0.00 4.70
667 668 4.497516 AGATATAAGGTGTCCATGAGCCT 58.502 43.478 0.00 0.00 0.00 4.58
668 669 5.655394 AGATATAAGGTGTCCATGAGCCTA 58.345 41.667 0.00 0.00 0.00 3.93
669 670 6.084738 AGATATAAGGTGTCCATGAGCCTAA 58.915 40.000 0.00 0.00 0.00 2.69
670 671 4.696479 ATAAGGTGTCCATGAGCCTAAG 57.304 45.455 0.00 0.00 0.00 2.18
671 672 0.543749 AGGTGTCCATGAGCCTAAGC 59.456 55.000 0.00 0.00 40.32 3.09
683 684 1.587547 GCCTAAGCTCCAGAAATCCG 58.412 55.000 0.00 0.00 35.50 4.18
684 685 1.587547 CCTAAGCTCCAGAAATCCGC 58.412 55.000 0.00 0.00 0.00 5.54
685 686 1.212616 CTAAGCTCCAGAAATCCGCG 58.787 55.000 0.00 0.00 0.00 6.46
686 687 0.535335 TAAGCTCCAGAAATCCGCGT 59.465 50.000 4.92 0.00 0.00 6.01
687 688 0.741221 AAGCTCCAGAAATCCGCGTC 60.741 55.000 4.92 0.00 0.00 5.19
688 689 2.174319 GCTCCAGAAATCCGCGTCC 61.174 63.158 4.92 0.00 0.00 4.79
689 690 1.218047 CTCCAGAAATCCGCGTCCA 59.782 57.895 4.92 0.00 0.00 4.02
690 691 0.179073 CTCCAGAAATCCGCGTCCAT 60.179 55.000 4.92 0.00 0.00 3.41
691 692 1.068588 CTCCAGAAATCCGCGTCCATA 59.931 52.381 4.92 0.00 0.00 2.74
692 693 1.483004 TCCAGAAATCCGCGTCCATAA 59.517 47.619 4.92 0.00 0.00 1.90
693 694 2.093394 TCCAGAAATCCGCGTCCATAAA 60.093 45.455 4.92 0.00 0.00 1.40
694 695 2.878406 CCAGAAATCCGCGTCCATAAAT 59.122 45.455 4.92 0.00 0.00 1.40
695 696 3.303990 CCAGAAATCCGCGTCCATAAATG 60.304 47.826 4.92 0.00 0.00 2.32
715 716 2.103094 TGGCAATAATCCAGAGTCGGAG 59.897 50.000 9.14 0.00 38.83 4.63
734 735 2.490903 GAGTGGAGTTAGTAGCGGAACA 59.509 50.000 0.00 0.00 0.00 3.18
735 736 2.492484 AGTGGAGTTAGTAGCGGAACAG 59.508 50.000 0.00 0.00 0.00 3.16
736 737 1.822990 TGGAGTTAGTAGCGGAACAGG 59.177 52.381 0.00 0.00 0.00 4.00
737 738 1.823610 GGAGTTAGTAGCGGAACAGGT 59.176 52.381 0.00 0.00 0.00 4.00
738 739 2.159268 GGAGTTAGTAGCGGAACAGGTC 60.159 54.545 0.00 0.00 0.00 3.85
739 740 2.754002 GAGTTAGTAGCGGAACAGGTCT 59.246 50.000 0.00 0.00 0.00 3.85
740 741 3.944015 GAGTTAGTAGCGGAACAGGTCTA 59.056 47.826 0.00 0.00 0.00 2.59
741 742 3.693578 AGTTAGTAGCGGAACAGGTCTAC 59.306 47.826 0.00 0.00 33.48 2.59
742 743 1.472188 AGTAGCGGAACAGGTCTACC 58.528 55.000 0.00 0.00 33.70 3.18
744 745 1.404748 GTAGCGGAACAGGTCTACCTC 59.595 57.143 0.00 0.00 46.65 3.85
745 746 0.251653 AGCGGAACAGGTCTACCTCA 60.252 55.000 0.00 0.00 46.65 3.86
746 747 0.606604 GCGGAACAGGTCTACCTCAA 59.393 55.000 0.00 0.00 46.65 3.02
747 748 1.001633 GCGGAACAGGTCTACCTCAAA 59.998 52.381 0.00 0.00 46.65 2.69
748 749 2.549349 GCGGAACAGGTCTACCTCAAAA 60.549 50.000 0.00 0.00 46.65 2.44
749 750 3.735591 CGGAACAGGTCTACCTCAAAAA 58.264 45.455 0.00 0.00 46.65 1.94
781 782 7.440523 AAAGGTAGCTGAACAAAGTTATCTG 57.559 36.000 0.00 0.00 26.26 2.90
793 794 6.006449 ACAAAGTTATCTGCTCCTGATTTGT 58.994 36.000 0.00 0.00 0.00 2.83
794 795 6.150140 ACAAAGTTATCTGCTCCTGATTTGTC 59.850 38.462 0.00 0.00 0.00 3.18
795 796 5.426689 AGTTATCTGCTCCTGATTTGTCA 57.573 39.130 0.00 0.00 0.00 3.58
796 797 5.999044 AGTTATCTGCTCCTGATTTGTCAT 58.001 37.500 0.00 0.00 0.00 3.06
797 798 5.821470 AGTTATCTGCTCCTGATTTGTCATG 59.179 40.000 0.00 0.00 0.00 3.07
798 799 3.708403 TCTGCTCCTGATTTGTCATGT 57.292 42.857 0.00 0.00 0.00 3.21
800 801 2.422479 CTGCTCCTGATTTGTCATGTGG 59.578 50.000 0.00 0.00 0.00 4.17
801 802 2.040145 TGCTCCTGATTTGTCATGTGGA 59.960 45.455 0.00 0.00 0.00 4.02
802 803 2.681848 GCTCCTGATTTGTCATGTGGAG 59.318 50.000 0.00 0.00 41.61 3.86
803 804 2.681848 CTCCTGATTTGTCATGTGGAGC 59.318 50.000 0.00 0.00 34.16 4.70
804 805 1.747355 CCTGATTTGTCATGTGGAGCC 59.253 52.381 0.00 0.00 0.00 4.70
805 806 2.439409 CTGATTTGTCATGTGGAGCCA 58.561 47.619 0.00 0.00 0.00 4.75
806 807 2.821378 CTGATTTGTCATGTGGAGCCAA 59.179 45.455 0.00 0.00 0.00 4.52
807 808 2.821378 TGATTTGTCATGTGGAGCCAAG 59.179 45.455 0.00 0.00 0.00 3.61
808 809 1.619654 TTTGTCATGTGGAGCCAAGG 58.380 50.000 0.00 0.00 0.00 3.61
809 810 0.770499 TTGTCATGTGGAGCCAAGGA 59.230 50.000 0.00 0.00 0.00 3.36
810 811 0.994247 TGTCATGTGGAGCCAAGGAT 59.006 50.000 0.00 0.00 0.00 3.24
811 812 1.355381 TGTCATGTGGAGCCAAGGATT 59.645 47.619 0.00 0.00 0.00 3.01
812 813 2.225091 TGTCATGTGGAGCCAAGGATTT 60.225 45.455 0.00 0.00 0.00 2.17
813 814 2.165030 GTCATGTGGAGCCAAGGATTTG 59.835 50.000 0.00 0.00 0.00 2.32
814 815 2.041485 TCATGTGGAGCCAAGGATTTGA 59.959 45.455 0.00 0.00 36.36 2.69
815 816 2.905415 TGTGGAGCCAAGGATTTGAT 57.095 45.000 0.00 0.00 36.36 2.57
816 817 4.079844 TCATGTGGAGCCAAGGATTTGATA 60.080 41.667 0.00 0.00 36.36 2.15
817 818 3.889815 TGTGGAGCCAAGGATTTGATAG 58.110 45.455 0.00 0.00 36.36 2.08
818 819 3.523157 TGTGGAGCCAAGGATTTGATAGA 59.477 43.478 0.00 0.00 36.36 1.98
819 820 4.133078 GTGGAGCCAAGGATTTGATAGAG 58.867 47.826 0.00 0.00 36.36 2.43
820 821 3.782523 TGGAGCCAAGGATTTGATAGAGT 59.217 43.478 0.00 0.00 36.36 3.24
821 822 4.133078 GGAGCCAAGGATTTGATAGAGTG 58.867 47.826 0.00 0.00 36.36 3.51
822 823 4.133078 GAGCCAAGGATTTGATAGAGTGG 58.867 47.826 0.00 0.00 36.36 4.00
823 824 3.782523 AGCCAAGGATTTGATAGAGTGGA 59.217 43.478 0.00 0.00 36.36 4.02
824 825 4.133078 GCCAAGGATTTGATAGAGTGGAG 58.867 47.826 0.00 0.00 36.36 3.86
825 826 4.384647 GCCAAGGATTTGATAGAGTGGAGT 60.385 45.833 0.00 0.00 36.36 3.85
826 827 5.121811 CCAAGGATTTGATAGAGTGGAGTG 58.878 45.833 0.00 0.00 36.36 3.51
827 828 5.104776 CCAAGGATTTGATAGAGTGGAGTGA 60.105 44.000 0.00 0.00 36.36 3.41
828 829 5.606348 AGGATTTGATAGAGTGGAGTGAC 57.394 43.478 0.00 0.00 0.00 3.67
829 830 4.407296 AGGATTTGATAGAGTGGAGTGACC 59.593 45.833 0.00 0.00 39.54 4.02
830 831 4.443598 GGATTTGATAGAGTGGAGTGACCC 60.444 50.000 0.00 0.00 38.00 4.46
831 832 2.160721 TGATAGAGTGGAGTGACCCC 57.839 55.000 0.00 0.00 38.00 4.95
832 833 1.033574 GATAGAGTGGAGTGACCCCG 58.966 60.000 0.00 0.00 38.00 5.73
833 834 0.629596 ATAGAGTGGAGTGACCCCGA 59.370 55.000 0.00 0.00 38.00 5.14
834 835 0.323178 TAGAGTGGAGTGACCCCGAC 60.323 60.000 0.00 0.00 38.00 4.79
835 836 2.989824 AGTGGAGTGACCCCGACG 60.990 66.667 0.00 0.00 38.00 5.12
836 837 4.065281 GTGGAGTGACCCCGACGG 62.065 72.222 6.99 6.99 38.00 4.79
837 838 4.289101 TGGAGTGACCCCGACGGA 62.289 66.667 17.49 0.00 38.00 4.69
838 839 2.993264 GGAGTGACCCCGACGGAA 60.993 66.667 17.49 0.00 34.64 4.30
839 840 2.260743 GAGTGACCCCGACGGAAC 59.739 66.667 17.49 8.11 34.64 3.62
840 841 2.522436 AGTGACCCCGACGGAACA 60.522 61.111 17.49 9.41 34.64 3.18
841 842 2.048503 GTGACCCCGACGGAACAG 60.049 66.667 17.49 3.45 34.64 3.16
888 1151 4.438797 CACGCTTACATTATGAAGCAATGC 59.561 41.667 20.46 0.00 46.87 3.56
925 1188 2.288825 CGTTGAGCCAGTCCTGTAAGAA 60.289 50.000 0.00 0.00 34.07 2.52
926 1189 3.740115 GTTGAGCCAGTCCTGTAAGAAA 58.260 45.455 0.00 0.00 34.07 2.52
963 1230 0.471617 ACTGACAGGAGCAAAGCTGT 59.528 50.000 7.51 0.00 39.88 4.40
987 1255 7.173218 TGTAAGCAAGTTCTTACTGATTTCCAG 59.827 37.037 18.07 0.00 45.25 3.86
1007 1275 5.843969 TCCAGCAGGAACAATATATGGAGTA 59.156 40.000 0.00 0.00 42.23 2.59
1036 1304 1.001378 CAATACTTGCTTATGCCGCCC 60.001 52.381 0.00 0.00 38.71 6.13
1248 1516 2.542205 CCGACGGAGCGACAACATAATA 60.542 50.000 8.64 0.00 0.00 0.98
1726 2000 1.675720 TTCGCTCATCCATCTCCGCA 61.676 55.000 0.00 0.00 0.00 5.69
1761 2035 2.263077 GACGACAATGACGAGCATCTT 58.737 47.619 12.41 0.00 35.78 2.40
1775 2049 2.790791 ATCTTCGCCGAGCCCTCAG 61.791 63.158 0.00 0.00 0.00 3.35
1890 2164 2.419198 CGGCCGGAGATCCAGAAG 59.581 66.667 20.10 0.00 35.14 2.85
2350 2636 2.876645 GCGCGAGTTCGAGTGGAG 60.877 66.667 12.10 0.00 43.02 3.86
2361 2647 0.744874 CGAGTGGAGCGAGGGAAATA 59.255 55.000 0.00 0.00 0.00 1.40
2463 2749 3.955429 GTGCAGCACGTGTAATCAG 57.045 52.632 18.38 0.00 0.00 2.90
2505 2791 7.178712 ACTACTCGTTAAATAATCTGCATGC 57.821 36.000 11.82 11.82 0.00 4.06
2541 2829 2.089201 GTTGTACGCCCCTGCTATTTT 58.911 47.619 0.00 0.00 34.43 1.82
2542 2830 2.490509 GTTGTACGCCCCTGCTATTTTT 59.509 45.455 0.00 0.00 34.43 1.94
2581 2899 3.129113 TGTGCAATGCCATGAGTATGTTC 59.871 43.478 1.53 0.00 32.21 3.18
2713 3031 3.821033 AGTGCAAAATCAGTTACAGACCC 59.179 43.478 0.00 0.00 0.00 4.46
2741 3059 4.163839 AGGAGATTGAAACATCTCTCTGGG 59.836 45.833 9.90 0.00 42.11 4.45
2769 3091 9.748708 CAAACATCCTGAGAATTTTGAAAACTA 57.251 29.630 0.00 0.00 32.98 2.24
2787 3111 9.944376 TGAAAACTATAAGACAGCTGAAACTAT 57.056 29.630 23.35 13.04 0.00 2.12
2907 3235 1.006281 AGCCTCCCATCTTTTGCATGA 59.994 47.619 0.00 0.00 0.00 3.07
3013 3688 1.480954 ACAATAATCTCCTCCACGCGT 59.519 47.619 5.58 5.58 0.00 6.01
3056 3731 4.829968 CAGGATCTTCCATATGCTGTAGG 58.170 47.826 0.00 0.00 39.61 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.344203 TAAATGTTTGGGGCGGGCG 61.344 57.895 0.00 0.00 0.00 6.13
48 49 1.216977 GTAAATGTTTGGGGCGGGC 59.783 57.895 0.00 0.00 0.00 6.13
49 50 0.613572 AGGTAAATGTTTGGGGCGGG 60.614 55.000 0.00 0.00 0.00 6.13
50 51 1.262417 AAGGTAAATGTTTGGGGCGG 58.738 50.000 0.00 0.00 0.00 6.13
51 52 2.297597 TGAAAGGTAAATGTTTGGGGCG 59.702 45.455 0.00 0.00 0.00 6.13
52 53 3.864540 GCTGAAAGGTAAATGTTTGGGGC 60.865 47.826 0.00 0.00 0.00 5.80
53 54 3.323403 TGCTGAAAGGTAAATGTTTGGGG 59.677 43.478 0.00 0.00 0.00 4.96
54 55 4.599047 TGCTGAAAGGTAAATGTTTGGG 57.401 40.909 0.00 0.00 0.00 4.12
55 56 6.048509 AGTTTGCTGAAAGGTAAATGTTTGG 58.951 36.000 0.00 0.00 0.00 3.28
56 57 6.756074 TGAGTTTGCTGAAAGGTAAATGTTTG 59.244 34.615 0.00 0.00 0.00 2.93
57 58 6.872920 TGAGTTTGCTGAAAGGTAAATGTTT 58.127 32.000 0.00 0.00 0.00 2.83
58 59 6.463995 TGAGTTTGCTGAAAGGTAAATGTT 57.536 33.333 0.00 0.00 0.00 2.71
59 60 6.655078 ATGAGTTTGCTGAAAGGTAAATGT 57.345 33.333 0.00 0.00 0.00 2.71
60 61 9.079833 CAATATGAGTTTGCTGAAAGGTAAATG 57.920 33.333 0.00 0.00 0.00 2.32
61 62 9.023962 TCAATATGAGTTTGCTGAAAGGTAAAT 57.976 29.630 0.00 0.00 0.00 1.40
62 63 8.402798 TCAATATGAGTTTGCTGAAAGGTAAA 57.597 30.769 0.00 0.00 0.00 2.01
63 64 7.994425 TCAATATGAGTTTGCTGAAAGGTAA 57.006 32.000 0.00 0.00 0.00 2.85
64 65 7.665559 ACTTCAATATGAGTTTGCTGAAAGGTA 59.334 33.333 0.00 0.00 0.00 3.08
65 66 6.491403 ACTTCAATATGAGTTTGCTGAAAGGT 59.509 34.615 0.00 0.00 0.00 3.50
83 84 5.710513 TTATTGCACAAGAGCACTTCAAT 57.289 34.783 11.90 11.90 45.61 2.57
84 85 5.710513 ATTATTGCACAAGAGCACTTCAA 57.289 34.783 0.00 0.00 45.61 2.69
171 172 6.479660 CACCTAATTGCACAAAAATGTTGAGT 59.520 34.615 0.00 0.00 0.00 3.41
176 177 5.911752 TCACACCTAATTGCACAAAAATGT 58.088 33.333 0.00 0.00 0.00 2.71
179 180 7.856145 AATTTCACACCTAATTGCACAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
180 181 8.986847 CATAATTTCACACCTAATTGCACAAAA 58.013 29.630 0.00 0.00 0.00 2.44
183 184 7.089538 CACATAATTTCACACCTAATTGCACA 58.910 34.615 0.00 0.00 0.00 4.57
184 185 6.034898 GCACATAATTTCACACCTAATTGCAC 59.965 38.462 0.00 0.00 0.00 4.57
185 186 6.098679 GCACATAATTTCACACCTAATTGCA 58.901 36.000 0.00 0.00 0.00 4.08
186 187 6.034898 GTGCACATAATTTCACACCTAATTGC 59.965 38.462 13.17 0.00 0.00 3.56
187 188 7.315142 AGTGCACATAATTTCACACCTAATTG 58.685 34.615 21.04 0.00 32.25 2.32
188 189 7.466746 AGTGCACATAATTTCACACCTAATT 57.533 32.000 21.04 0.00 32.25 1.40
189 190 8.752005 ATAGTGCACATAATTTCACACCTAAT 57.248 30.769 21.04 0.00 32.25 1.73
190 191 9.845740 ATATAGTGCACATAATTTCACACCTAA 57.154 29.630 21.04 0.00 32.25 2.69
191 192 9.845740 AATATAGTGCACATAATTTCACACCTA 57.154 29.630 21.04 0.00 32.25 3.08
192 193 8.623903 CAATATAGTGCACATAATTTCACACCT 58.376 33.333 21.04 0.00 32.25 4.00
193 194 7.379529 GCAATATAGTGCACATAATTTCACACC 59.620 37.037 21.04 0.00 44.29 4.16
194 195 8.273643 GCAATATAGTGCACATAATTTCACAC 57.726 34.615 21.04 0.00 44.29 3.82
255 256 8.011673 CACACATATAGAGTTGTTTTGACACTG 58.988 37.037 0.00 0.00 0.00 3.66
256 257 7.173218 CCACACATATAGAGTTGTTTTGACACT 59.827 37.037 0.00 0.00 0.00 3.55
257 258 7.041372 ACCACACATATAGAGTTGTTTTGACAC 60.041 37.037 0.00 0.00 0.00 3.67
258 259 6.995686 ACCACACATATAGAGTTGTTTTGACA 59.004 34.615 0.00 0.00 0.00 3.58
259 260 7.298122 CACCACACATATAGAGTTGTTTTGAC 58.702 38.462 0.00 0.00 0.00 3.18
260 261 6.429692 CCACCACACATATAGAGTTGTTTTGA 59.570 38.462 0.00 0.00 0.00 2.69
261 262 6.349280 CCCACCACACATATAGAGTTGTTTTG 60.349 42.308 0.00 0.00 0.00 2.44
262 263 5.710099 CCCACCACACATATAGAGTTGTTTT 59.290 40.000 0.00 0.00 0.00 2.43
263 264 5.253330 CCCACCACACATATAGAGTTGTTT 58.747 41.667 0.00 0.00 0.00 2.83
265 266 3.199946 CCCCACCACACATATAGAGTTGT 59.800 47.826 0.00 0.00 0.00 3.32
266 267 3.454447 TCCCCACCACACATATAGAGTTG 59.546 47.826 0.00 0.00 0.00 3.16
267 268 3.711704 CTCCCCACCACACATATAGAGTT 59.288 47.826 0.00 0.00 0.00 3.01
268 269 3.309296 CTCCCCACCACACATATAGAGT 58.691 50.000 0.00 0.00 0.00 3.24
269 270 2.037772 GCTCCCCACCACACATATAGAG 59.962 54.545 0.00 0.00 0.00 2.43
270 271 2.047061 GCTCCCCACCACACATATAGA 58.953 52.381 0.00 0.00 0.00 1.98
273 274 0.918799 TGGCTCCCCACCACACATAT 60.919 55.000 0.00 0.00 35.79 1.78
297 298 8.824404 GCCTAAGCTCCACAGGATATTTTCCA 62.824 46.154 7.59 0.00 40.89 3.53
298 299 5.066593 CCTAAGCTCCACAGGATATTTTCC 58.933 45.833 0.00 0.00 45.85 3.13
299 300 4.517075 GCCTAAGCTCCACAGGATATTTTC 59.483 45.833 7.59 0.00 35.50 2.29
300 301 4.464947 GCCTAAGCTCCACAGGATATTTT 58.535 43.478 7.59 0.00 35.50 1.82
301 302 4.092116 GCCTAAGCTCCACAGGATATTT 57.908 45.455 7.59 0.00 35.50 1.40
302 303 3.778954 GCCTAAGCTCCACAGGATATT 57.221 47.619 7.59 0.00 35.50 1.28
313 314 4.064927 AGGTGCACCTAAGCCTAAGCTC 62.065 54.545 37.12 4.08 46.43 4.09
314 315 2.180696 AGGTGCACCTAAGCCTAAGCT 61.181 52.381 37.12 8.46 45.94 3.74
315 316 0.253327 AGGTGCACCTAAGCCTAAGC 59.747 55.000 37.12 4.79 46.48 3.09
326 327 1.070914 GGCTAGATAAGGAGGTGCACC 59.929 57.143 29.22 29.22 0.00 5.01
327 328 1.762957 TGGCTAGATAAGGAGGTGCAC 59.237 52.381 8.80 8.80 0.00 4.57
328 329 2.174685 TGGCTAGATAAGGAGGTGCA 57.825 50.000 0.00 0.00 0.00 4.57
329 330 3.071602 TGAATGGCTAGATAAGGAGGTGC 59.928 47.826 0.00 0.00 0.00 5.01
330 331 4.963318 TGAATGGCTAGATAAGGAGGTG 57.037 45.455 0.00 0.00 0.00 4.00
331 332 5.410602 AGATGAATGGCTAGATAAGGAGGT 58.589 41.667 0.00 0.00 0.00 3.85
332 333 7.125507 ACATAGATGAATGGCTAGATAAGGAGG 59.874 40.741 0.00 0.00 0.00 4.30
333 334 8.076910 ACATAGATGAATGGCTAGATAAGGAG 57.923 38.462 0.00 0.00 0.00 3.69
334 335 9.720874 ATACATAGATGAATGGCTAGATAAGGA 57.279 33.333 0.00 0.00 0.00 3.36
335 336 9.979578 GATACATAGATGAATGGCTAGATAAGG 57.020 37.037 0.00 0.00 0.00 2.69
336 337 9.676195 CGATACATAGATGAATGGCTAGATAAG 57.324 37.037 0.00 0.00 0.00 1.73
337 338 8.138074 GCGATACATAGATGAATGGCTAGATAA 58.862 37.037 0.00 0.00 0.00 1.75
338 339 7.520614 CGCGATACATAGATGAATGGCTAGATA 60.521 40.741 0.00 0.00 0.00 1.98
339 340 6.511416 GCGATACATAGATGAATGGCTAGAT 58.489 40.000 0.00 0.00 0.00 1.98
340 341 5.449177 CGCGATACATAGATGAATGGCTAGA 60.449 44.000 0.00 0.00 0.00 2.43
341 342 4.737279 CGCGATACATAGATGAATGGCTAG 59.263 45.833 0.00 0.00 0.00 3.42
342 343 4.398044 TCGCGATACATAGATGAATGGCTA 59.602 41.667 3.71 0.00 0.00 3.93
343 344 3.193479 TCGCGATACATAGATGAATGGCT 59.807 43.478 3.71 0.00 0.00 4.75
344 345 3.511699 TCGCGATACATAGATGAATGGC 58.488 45.455 3.71 0.00 0.00 4.40
345 346 5.052106 CGAATCGCGATACATAGATGAATGG 60.052 44.000 24.00 0.00 44.57 3.16
346 347 5.553396 GCGAATCGCGATACATAGATGAATG 60.553 44.000 24.00 1.41 44.55 2.67
347 348 4.500837 GCGAATCGCGATACATAGATGAAT 59.499 41.667 24.00 0.89 44.55 2.57
348 349 3.851969 GCGAATCGCGATACATAGATGAA 59.148 43.478 24.00 0.00 44.55 2.57
349 350 3.426323 GCGAATCGCGATACATAGATGA 58.574 45.455 24.00 0.00 44.55 2.92
350 351 3.807780 GCGAATCGCGATACATAGATG 57.192 47.619 24.00 7.18 44.55 2.90
363 364 1.898709 GAAAAGTTCTTGCGCGAATCG 59.101 47.619 12.10 0.00 42.12 3.34
364 365 3.120511 AGAGAAAAGTTCTTGCGCGAATC 60.121 43.478 12.10 0.00 40.87 2.52
365 366 2.808543 AGAGAAAAGTTCTTGCGCGAAT 59.191 40.909 12.10 0.00 40.87 3.34
366 367 2.210116 AGAGAAAAGTTCTTGCGCGAA 58.790 42.857 12.10 0.00 40.87 4.70
367 368 1.865865 AGAGAAAAGTTCTTGCGCGA 58.134 45.000 12.10 0.00 40.87 5.87
368 369 2.670401 AAGAGAAAAGTTCTTGCGCG 57.330 45.000 0.00 0.00 40.87 6.86
369 370 4.216366 AGAAAGAGAAAAGTTCTTGCGC 57.784 40.909 0.00 0.00 40.87 6.09
374 375 9.847706 GAAAGAAACAAGAAAGAGAAAAGTTCT 57.152 29.630 0.00 0.00 44.21 3.01
375 376 9.626045 TGAAAGAAACAAGAAAGAGAAAAGTTC 57.374 29.630 0.00 0.00 0.00 3.01
376 377 9.981114 TTGAAAGAAACAAGAAAGAGAAAAGTT 57.019 25.926 0.00 0.00 0.00 2.66
377 378 9.981114 TTTGAAAGAAACAAGAAAGAGAAAAGT 57.019 25.926 0.00 0.00 0.00 2.66
406 407 8.603181 GCAAAGTTTGAAGTTCATATGTTGTTT 58.397 29.630 19.82 0.00 0.00 2.83
407 408 7.763528 TGCAAAGTTTGAAGTTCATATGTTGTT 59.236 29.630 19.82 0.00 0.00 2.83
408 409 7.264221 TGCAAAGTTTGAAGTTCATATGTTGT 58.736 30.769 19.82 0.00 0.00 3.32
409 410 7.568134 GCTGCAAAGTTTGAAGTTCATATGTTG 60.568 37.037 22.18 10.86 38.65 3.33
410 411 6.421801 GCTGCAAAGTTTGAAGTTCATATGTT 59.578 34.615 22.18 0.00 38.65 2.71
411 412 5.922544 GCTGCAAAGTTTGAAGTTCATATGT 59.077 36.000 22.18 0.00 38.65 2.29
412 413 5.921976 TGCTGCAAAGTTTGAAGTTCATATG 59.078 36.000 22.18 0.00 38.65 1.78
413 414 5.922544 GTGCTGCAAAGTTTGAAGTTCATAT 59.077 36.000 22.18 0.00 38.65 1.78
414 415 5.163571 TGTGCTGCAAAGTTTGAAGTTCATA 60.164 36.000 22.18 10.12 38.65 2.15
415 416 4.114794 GTGCTGCAAAGTTTGAAGTTCAT 58.885 39.130 22.18 0.00 38.65 2.57
416 417 3.056962 TGTGCTGCAAAGTTTGAAGTTCA 60.057 39.130 22.18 17.87 38.65 3.18
417 418 3.510719 TGTGCTGCAAAGTTTGAAGTTC 58.489 40.909 22.18 15.94 38.65 3.01
418 419 3.591196 TGTGCTGCAAAGTTTGAAGTT 57.409 38.095 22.18 0.00 38.65 2.66
419 420 3.193267 TCTTGTGCTGCAAAGTTTGAAGT 59.807 39.130 22.18 0.00 38.65 3.01
420 421 3.772932 TCTTGTGCTGCAAAGTTTGAAG 58.227 40.909 19.82 18.91 39.47 3.02
421 422 3.865011 TCTTGTGCTGCAAAGTTTGAA 57.135 38.095 19.82 8.06 36.53 2.69
422 423 3.865011 TTCTTGTGCTGCAAAGTTTGA 57.135 38.095 19.82 3.95 36.53 2.69
423 424 4.152045 TGTTTTCTTGTGCTGCAAAGTTTG 59.848 37.500 11.41 11.41 36.53 2.93
424 425 4.314121 TGTTTTCTTGTGCTGCAAAGTTT 58.686 34.783 2.77 0.00 36.53 2.66
425 426 3.924144 TGTTTTCTTGTGCTGCAAAGTT 58.076 36.364 2.77 0.00 36.53 2.66
426 427 3.591196 TGTTTTCTTGTGCTGCAAAGT 57.409 38.095 2.77 0.00 36.53 2.66
427 428 4.807304 AGAATGTTTTCTTGTGCTGCAAAG 59.193 37.500 2.77 10.66 39.18 2.77
428 429 4.757594 AGAATGTTTTCTTGTGCTGCAAA 58.242 34.783 2.77 0.00 39.18 3.68
429 430 4.389890 AGAATGTTTTCTTGTGCTGCAA 57.610 36.364 2.77 0.00 39.18 4.08
430 431 5.512753 TTAGAATGTTTTCTTGTGCTGCA 57.487 34.783 0.00 0.00 42.29 4.41
431 432 8.023128 TCTAATTAGAATGTTTTCTTGTGCTGC 58.977 33.333 12.87 0.00 42.29 5.25
432 433 9.897744 TTCTAATTAGAATGTTTTCTTGTGCTG 57.102 29.630 21.46 0.00 42.29 4.41
529 530 9.825109 TGACCGACATAAATATACAAAATGAGA 57.175 29.630 0.00 0.00 0.00 3.27
571 572 8.522830 AGTGTGAAATTTTCAGTGAGAGAAAAA 58.477 29.630 12.02 0.00 45.02 1.94
572 573 7.970061 CAGTGTGAAATTTTCAGTGAGAGAAAA 59.030 33.333 12.02 3.89 45.68 2.29
573 574 7.121168 ACAGTGTGAAATTTTCAGTGAGAGAAA 59.879 33.333 25.11 0.00 41.01 2.52
574 575 6.599244 ACAGTGTGAAATTTTCAGTGAGAGAA 59.401 34.615 25.11 0.00 41.01 2.87
575 576 6.115446 ACAGTGTGAAATTTTCAGTGAGAGA 58.885 36.000 25.11 0.00 41.01 3.10
576 577 6.369059 ACAGTGTGAAATTTTCAGTGAGAG 57.631 37.500 25.11 4.00 41.01 3.20
577 578 7.552687 ACTTACAGTGTGAAATTTTCAGTGAGA 59.447 33.333 25.11 15.84 41.01 3.27
578 579 7.697691 ACTTACAGTGTGAAATTTTCAGTGAG 58.302 34.615 25.11 13.44 41.01 3.51
579 580 7.624360 ACTTACAGTGTGAAATTTTCAGTGA 57.376 32.000 25.11 13.90 41.01 3.41
580 581 9.438291 CTAACTTACAGTGTGAAATTTTCAGTG 57.562 33.333 20.51 20.51 41.01 3.66
581 582 9.174166 ACTAACTTACAGTGTGAAATTTTCAGT 57.826 29.630 12.02 9.04 41.01 3.41
583 584 9.781834 CAACTAACTTACAGTGTGAAATTTTCA 57.218 29.630 5.88 7.74 37.33 2.69
584 585 9.783256 ACAACTAACTTACAGTGTGAAATTTTC 57.217 29.630 5.88 2.05 0.00 2.29
589 590 8.392612 GCTAAACAACTAACTTACAGTGTGAAA 58.607 33.333 5.88 0.00 0.00 2.69
590 591 7.549842 TGCTAAACAACTAACTTACAGTGTGAA 59.450 33.333 5.88 0.00 0.00 3.18
591 592 7.010738 GTGCTAAACAACTAACTTACAGTGTGA 59.989 37.037 5.88 0.00 0.00 3.58
592 593 7.123830 GTGCTAAACAACTAACTTACAGTGTG 58.876 38.462 5.88 0.00 0.00 3.82
593 594 6.019318 CGTGCTAAACAACTAACTTACAGTGT 60.019 38.462 0.00 0.00 0.00 3.55
594 595 6.352526 CGTGCTAAACAACTAACTTACAGTG 58.647 40.000 0.00 0.00 0.00 3.66
595 596 5.464389 CCGTGCTAAACAACTAACTTACAGT 59.536 40.000 0.00 0.00 0.00 3.55
596 597 5.693104 TCCGTGCTAAACAACTAACTTACAG 59.307 40.000 0.00 0.00 0.00 2.74
597 598 5.599732 TCCGTGCTAAACAACTAACTTACA 58.400 37.500 0.00 0.00 0.00 2.41
598 599 6.589139 AGATCCGTGCTAAACAACTAACTTAC 59.411 38.462 0.00 0.00 0.00 2.34
599 600 6.694447 AGATCCGTGCTAAACAACTAACTTA 58.306 36.000 0.00 0.00 0.00 2.24
600 601 5.548406 AGATCCGTGCTAAACAACTAACTT 58.452 37.500 0.00 0.00 0.00 2.66
601 602 5.148651 AGATCCGTGCTAAACAACTAACT 57.851 39.130 0.00 0.00 0.00 2.24
602 603 4.927425 TGAGATCCGTGCTAAACAACTAAC 59.073 41.667 0.00 0.00 0.00 2.34
603 604 5.142061 TGAGATCCGTGCTAAACAACTAA 57.858 39.130 0.00 0.00 0.00 2.24
604 605 4.794278 TGAGATCCGTGCTAAACAACTA 57.206 40.909 0.00 0.00 0.00 2.24
605 606 3.678056 TGAGATCCGTGCTAAACAACT 57.322 42.857 0.00 0.00 0.00 3.16
606 607 4.712763 CTTTGAGATCCGTGCTAAACAAC 58.287 43.478 0.00 0.00 0.00 3.32
607 608 3.188460 GCTTTGAGATCCGTGCTAAACAA 59.812 43.478 0.00 0.00 0.00 2.83
608 609 2.742053 GCTTTGAGATCCGTGCTAAACA 59.258 45.455 0.00 0.00 0.00 2.83
609 610 3.003480 AGCTTTGAGATCCGTGCTAAAC 58.997 45.455 0.00 0.00 0.00 2.01
610 611 3.334583 AGCTTTGAGATCCGTGCTAAA 57.665 42.857 0.00 0.00 0.00 1.85
611 612 4.672587 ATAGCTTTGAGATCCGTGCTAA 57.327 40.909 0.00 0.00 36.74 3.09
612 613 5.984695 ATATAGCTTTGAGATCCGTGCTA 57.015 39.130 0.00 0.00 37.41 3.49
613 614 4.881019 ATATAGCTTTGAGATCCGTGCT 57.119 40.909 0.00 0.00 34.92 4.40
614 615 4.991056 TCAATATAGCTTTGAGATCCGTGC 59.009 41.667 0.00 0.00 0.00 5.34
615 616 7.360691 CCATTCAATATAGCTTTGAGATCCGTG 60.361 40.741 0.00 0.00 34.76 4.94
616 617 6.652481 CCATTCAATATAGCTTTGAGATCCGT 59.348 38.462 0.00 0.00 34.76 4.69
617 618 6.652481 ACCATTCAATATAGCTTTGAGATCCG 59.348 38.462 0.00 0.00 34.76 4.18
618 619 7.992754 ACCATTCAATATAGCTTTGAGATCC 57.007 36.000 0.00 0.00 34.76 3.36
634 635 9.387397 TGGACACCTTATATCTATACCATTCAA 57.613 33.333 0.00 0.00 0.00 2.69
635 636 8.966155 TGGACACCTTATATCTATACCATTCA 57.034 34.615 0.00 0.00 0.00 2.57
636 637 9.823647 CATGGACACCTTATATCTATACCATTC 57.176 37.037 0.00 0.00 33.07 2.67
637 638 9.560860 TCATGGACACCTTATATCTATACCATT 57.439 33.333 0.00 0.00 33.07 3.16
638 639 9.206690 CTCATGGACACCTTATATCTATACCAT 57.793 37.037 0.00 0.00 35.24 3.55
639 640 7.124298 GCTCATGGACACCTTATATCTATACCA 59.876 40.741 0.00 0.00 0.00 3.25
640 641 7.418025 GGCTCATGGACACCTTATATCTATACC 60.418 44.444 0.00 0.00 0.00 2.73
641 642 7.343316 AGGCTCATGGACACCTTATATCTATAC 59.657 40.741 0.00 0.00 0.00 1.47
642 643 7.422512 AGGCTCATGGACACCTTATATCTATA 58.577 38.462 0.00 0.00 0.00 1.31
643 644 6.267635 AGGCTCATGGACACCTTATATCTAT 58.732 40.000 0.00 0.00 0.00 1.98
644 645 5.655394 AGGCTCATGGACACCTTATATCTA 58.345 41.667 0.00 0.00 0.00 1.98
645 646 4.497516 AGGCTCATGGACACCTTATATCT 58.502 43.478 0.00 0.00 0.00 1.98
646 647 4.899352 AGGCTCATGGACACCTTATATC 57.101 45.455 0.00 0.00 0.00 1.63
647 648 5.280215 GCTTAGGCTCATGGACACCTTATAT 60.280 44.000 0.00 0.00 33.60 0.86
648 649 4.040461 GCTTAGGCTCATGGACACCTTATA 59.960 45.833 0.00 0.00 33.60 0.98
649 650 3.181450 GCTTAGGCTCATGGACACCTTAT 60.181 47.826 0.00 0.00 33.60 1.73
650 651 2.170607 GCTTAGGCTCATGGACACCTTA 59.829 50.000 0.00 0.00 33.60 2.69
651 652 1.065126 GCTTAGGCTCATGGACACCTT 60.065 52.381 0.00 0.00 33.60 3.50
652 653 0.543749 GCTTAGGCTCATGGACACCT 59.456 55.000 0.00 0.00 36.27 4.00
653 654 3.086733 GCTTAGGCTCATGGACACC 57.913 57.895 0.00 0.00 35.22 4.16
664 665 1.587547 CGGATTTCTGGAGCTTAGGC 58.412 55.000 0.00 0.00 39.06 3.93
665 666 1.587547 GCGGATTTCTGGAGCTTAGG 58.412 55.000 0.00 0.00 0.00 2.69
666 667 1.212616 CGCGGATTTCTGGAGCTTAG 58.787 55.000 0.00 0.00 0.00 2.18
667 668 0.535335 ACGCGGATTTCTGGAGCTTA 59.465 50.000 12.47 0.00 0.00 3.09
668 669 0.741221 GACGCGGATTTCTGGAGCTT 60.741 55.000 12.47 0.00 0.00 3.74
669 670 1.153549 GACGCGGATTTCTGGAGCT 60.154 57.895 12.47 0.00 0.00 4.09
670 671 2.174319 GGACGCGGATTTCTGGAGC 61.174 63.158 12.47 0.00 0.00 4.70
671 672 0.179073 ATGGACGCGGATTTCTGGAG 60.179 55.000 12.47 0.00 0.00 3.86
672 673 1.116308 TATGGACGCGGATTTCTGGA 58.884 50.000 12.47 0.00 0.00 3.86
673 674 1.948104 TTATGGACGCGGATTTCTGG 58.052 50.000 12.47 0.00 0.00 3.86
674 675 3.877064 CATTTATGGACGCGGATTTCTG 58.123 45.455 12.47 0.00 0.00 3.02
688 689 6.348786 CCGACTCTGGATTATTGCCATTTATG 60.349 42.308 0.00 0.00 34.33 1.90
689 690 5.707298 CCGACTCTGGATTATTGCCATTTAT 59.293 40.000 0.00 0.00 34.33 1.40
690 691 5.063204 CCGACTCTGGATTATTGCCATTTA 58.937 41.667 0.00 0.00 34.33 1.40
691 692 3.885297 CCGACTCTGGATTATTGCCATTT 59.115 43.478 0.00 0.00 34.33 2.32
692 693 3.136443 TCCGACTCTGGATTATTGCCATT 59.864 43.478 0.00 0.00 34.33 3.16
693 694 2.705658 TCCGACTCTGGATTATTGCCAT 59.294 45.455 0.00 0.00 34.33 4.40
694 695 2.103094 CTCCGACTCTGGATTATTGCCA 59.897 50.000 0.00 0.00 37.41 4.92
695 696 2.103263 ACTCCGACTCTGGATTATTGCC 59.897 50.000 0.00 0.00 37.41 4.52
696 697 3.126831 CACTCCGACTCTGGATTATTGC 58.873 50.000 0.00 0.00 37.41 3.56
707 708 2.355444 GCTACTAACTCCACTCCGACTC 59.645 54.545 0.00 0.00 0.00 3.36
715 716 2.416972 CCTGTTCCGCTACTAACTCCAC 60.417 54.545 0.00 0.00 0.00 4.02
755 756 8.352942 CAGATAACTTTGTTCAGCTACCTTTTT 58.647 33.333 0.00 0.00 0.00 1.94
756 757 7.522236 GCAGATAACTTTGTTCAGCTACCTTTT 60.522 37.037 0.00 0.00 0.00 2.27
757 758 6.072452 GCAGATAACTTTGTTCAGCTACCTTT 60.072 38.462 0.00 0.00 0.00 3.11
758 759 5.412904 GCAGATAACTTTGTTCAGCTACCTT 59.587 40.000 0.00 0.00 0.00 3.50
759 760 4.938226 GCAGATAACTTTGTTCAGCTACCT 59.062 41.667 0.00 0.00 0.00 3.08
760 761 4.938226 AGCAGATAACTTTGTTCAGCTACC 59.062 41.667 0.00 0.00 31.46 3.18
761 762 5.064071 GGAGCAGATAACTTTGTTCAGCTAC 59.936 44.000 0.00 0.00 33.12 3.58
762 763 5.046304 AGGAGCAGATAACTTTGTTCAGCTA 60.046 40.000 0.00 0.00 33.12 3.32
763 764 4.006319 GGAGCAGATAACTTTGTTCAGCT 58.994 43.478 0.00 0.00 35.29 4.24
764 765 4.006319 AGGAGCAGATAACTTTGTTCAGC 58.994 43.478 0.00 0.00 0.00 4.26
765 766 5.240891 TCAGGAGCAGATAACTTTGTTCAG 58.759 41.667 0.00 0.00 0.00 3.02
766 767 5.227569 TCAGGAGCAGATAACTTTGTTCA 57.772 39.130 0.00 0.00 0.00 3.18
767 768 6.749923 AATCAGGAGCAGATAACTTTGTTC 57.250 37.500 0.00 0.00 0.00 3.18
768 769 6.491403 ACAAATCAGGAGCAGATAACTTTGTT 59.509 34.615 0.00 0.00 0.00 2.83
769 770 6.006449 ACAAATCAGGAGCAGATAACTTTGT 58.994 36.000 0.00 0.00 0.00 2.83
770 771 6.149973 TGACAAATCAGGAGCAGATAACTTTG 59.850 38.462 0.00 0.00 0.00 2.77
771 772 6.240894 TGACAAATCAGGAGCAGATAACTTT 58.759 36.000 0.00 0.00 0.00 2.66
781 782 2.681848 CTCCACATGACAAATCAGGAGC 59.318 50.000 0.00 0.00 39.01 4.70
793 794 2.041485 TCAAATCCTTGGCTCCACATGA 59.959 45.455 0.00 0.00 33.01 3.07
794 795 2.449464 TCAAATCCTTGGCTCCACATG 58.551 47.619 0.00 0.00 33.01 3.21
795 796 2.905415 TCAAATCCTTGGCTCCACAT 57.095 45.000 0.00 0.00 33.01 3.21
796 797 2.905415 ATCAAATCCTTGGCTCCACA 57.095 45.000 0.00 0.00 33.01 4.17
797 798 4.133078 CTCTATCAAATCCTTGGCTCCAC 58.867 47.826 0.00 0.00 33.01 4.02
798 799 3.782523 ACTCTATCAAATCCTTGGCTCCA 59.217 43.478 0.00 0.00 33.01 3.86
800 801 4.133078 CCACTCTATCAAATCCTTGGCTC 58.867 47.826 0.00 0.00 33.01 4.70
801 802 3.782523 TCCACTCTATCAAATCCTTGGCT 59.217 43.478 0.00 0.00 33.01 4.75
802 803 4.133078 CTCCACTCTATCAAATCCTTGGC 58.867 47.826 0.00 0.00 33.01 4.52
803 804 5.104776 TCACTCCACTCTATCAAATCCTTGG 60.105 44.000 0.00 0.00 33.01 3.61
804 805 5.814705 GTCACTCCACTCTATCAAATCCTTG 59.185 44.000 0.00 0.00 0.00 3.61
805 806 5.104735 GGTCACTCCACTCTATCAAATCCTT 60.105 44.000 0.00 0.00 35.97 3.36
806 807 4.407296 GGTCACTCCACTCTATCAAATCCT 59.593 45.833 0.00 0.00 35.97 3.24
807 808 4.443598 GGGTCACTCCACTCTATCAAATCC 60.444 50.000 0.00 0.00 38.11 3.01
808 809 4.443598 GGGGTCACTCCACTCTATCAAATC 60.444 50.000 0.00 0.00 36.51 2.17
809 810 3.456277 GGGGTCACTCCACTCTATCAAAT 59.544 47.826 0.00 0.00 36.51 2.32
810 811 2.838202 GGGGTCACTCCACTCTATCAAA 59.162 50.000 0.00 0.00 36.51 2.69
811 812 2.467880 GGGGTCACTCCACTCTATCAA 58.532 52.381 0.00 0.00 36.51 2.57
812 813 1.685180 CGGGGTCACTCCACTCTATCA 60.685 57.143 0.00 0.00 37.50 2.15
813 814 1.033574 CGGGGTCACTCCACTCTATC 58.966 60.000 0.00 0.00 37.50 2.08
814 815 0.629596 TCGGGGTCACTCCACTCTAT 59.370 55.000 0.00 0.00 37.50 1.98
815 816 0.323178 GTCGGGGTCACTCCACTCTA 60.323 60.000 0.00 0.00 37.50 2.43
816 817 1.606889 GTCGGGGTCACTCCACTCT 60.607 63.158 0.00 0.00 37.50 3.24
817 818 2.971452 GTCGGGGTCACTCCACTC 59.029 66.667 0.00 0.00 37.50 3.51
818 819 2.989824 CGTCGGGGTCACTCCACT 60.990 66.667 0.00 0.00 37.50 4.00
819 820 4.065281 CCGTCGGGGTCACTCCAC 62.065 72.222 2.34 0.00 38.11 4.02
820 821 3.813606 TTCCGTCGGGGTCACTCCA 62.814 63.158 12.29 0.00 38.11 3.86
821 822 2.993264 TTCCGTCGGGGTCACTCC 60.993 66.667 12.29 0.00 37.00 3.85
822 823 2.260743 GTTCCGTCGGGGTCACTC 59.739 66.667 12.29 0.00 37.00 3.51
823 824 2.522436 TGTTCCGTCGGGGTCACT 60.522 61.111 12.29 0.00 37.00 3.41
824 825 2.048503 CTGTTCCGTCGGGGTCAC 60.049 66.667 12.29 4.28 37.00 3.67
825 826 3.307906 CCTGTTCCGTCGGGGTCA 61.308 66.667 12.29 7.52 37.00 4.02
826 827 4.754667 GCCTGTTCCGTCGGGGTC 62.755 72.222 12.29 2.99 37.00 4.46
828 829 4.452733 GAGCCTGTTCCGTCGGGG 62.453 72.222 12.29 5.63 34.64 5.73
829 830 1.601419 TTAGAGCCTGTTCCGTCGGG 61.601 60.000 12.29 0.00 36.96 5.14
830 831 0.179134 CTTAGAGCCTGTTCCGTCGG 60.179 60.000 4.39 4.39 0.00 4.79
831 832 0.526662 ACTTAGAGCCTGTTCCGTCG 59.473 55.000 0.00 0.00 0.00 5.12
832 833 1.272769 ACACTTAGAGCCTGTTCCGTC 59.727 52.381 0.00 0.00 0.00 4.79
833 834 1.272769 GACACTTAGAGCCTGTTCCGT 59.727 52.381 0.00 0.00 0.00 4.69
834 835 1.272490 TGACACTTAGAGCCTGTTCCG 59.728 52.381 0.00 0.00 0.00 4.30
835 836 2.300437 ACTGACACTTAGAGCCTGTTCC 59.700 50.000 0.00 0.00 0.00 3.62
836 837 3.669251 ACTGACACTTAGAGCCTGTTC 57.331 47.619 0.00 0.00 0.00 3.18
837 838 3.388024 TCAACTGACACTTAGAGCCTGTT 59.612 43.478 0.00 0.00 0.00 3.16
838 839 2.965831 TCAACTGACACTTAGAGCCTGT 59.034 45.455 0.00 0.00 0.00 4.00
839 840 3.321497 GTCAACTGACACTTAGAGCCTG 58.679 50.000 4.96 0.00 44.18 4.85
840 841 2.300437 GGTCAACTGACACTTAGAGCCT 59.700 50.000 11.76 0.00 46.47 4.58
841 842 2.300437 AGGTCAACTGACACTTAGAGCC 59.700 50.000 11.76 0.00 46.47 4.70
926 1189 9.396022 CCTGTCAGTGGTGTTTATATAGAAAAT 57.604 33.333 0.00 0.00 0.00 1.82
963 1230 6.149474 GCTGGAAATCAGTAAGAACTTGCTTA 59.851 38.462 2.65 0.00 45.08 3.09
987 1255 7.175641 AGCAAATACTCCATATATTGTTCCTGC 59.824 37.037 0.00 0.00 0.00 4.85
1036 1304 2.159170 CGGCTAGGACAAGGAAGAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
1098 1366 0.319728 CGATGATCGGCTGAGGGATT 59.680 55.000 7.00 0.00 36.00 3.01
1726 2000 0.675837 TCGTCGTCCTCGTCTGGAAT 60.676 55.000 0.00 0.00 37.93 3.01
1775 2049 0.179097 GCTCACCATCTCGTCTTCCC 60.179 60.000 0.00 0.00 0.00 3.97
1833 2107 3.767230 CACTCGACGCAAGCCACG 61.767 66.667 0.00 0.00 45.62 4.94
1860 2134 4.468689 GGCCGGGTGACTAGGTGC 62.469 72.222 2.18 0.00 0.00 5.01
2231 2515 4.458397 GCATCATCTTGATCTCCTTTGGA 58.542 43.478 0.00 0.00 34.28 3.53
2234 2518 3.118112 ACGGCATCATCTTGATCTCCTTT 60.118 43.478 0.00 0.00 34.28 3.11
2350 2636 1.152383 GACGCCACTATTTCCCTCGC 61.152 60.000 0.00 0.00 0.00 5.03
2361 2647 4.039357 CGTGAGGTCGACGCCACT 62.039 66.667 25.76 12.92 0.00 4.00
2445 2731 0.443869 CCTGATTACACGTGCTGCAC 59.556 55.000 22.38 22.38 0.00 4.57
2453 2739 1.146263 GGGCCTCCCTGATTACACG 59.854 63.158 0.84 0.00 41.34 4.49
2463 2749 2.605257 AGTTTAAACAAAGGGCCTCCC 58.395 47.619 20.06 0.00 45.90 4.30
2541 2829 4.940654 TGCACATGAACATATCCGAAAGAA 59.059 37.500 0.00 0.00 0.00 2.52
2542 2830 4.512484 TGCACATGAACATATCCGAAAGA 58.488 39.130 0.00 0.00 0.00 2.52
2561 2849 3.623703 AGAACATACTCATGGCATTGCA 58.376 40.909 11.39 0.00 36.39 4.08
2581 2899 1.806542 AGGCGCAGACAACAAACATAG 59.193 47.619 10.83 0.00 39.87 2.23
2713 3031 2.171448 AGATGTTTCAATCTCCTCCCGG 59.829 50.000 0.00 0.00 30.91 5.73
2741 3059 8.542953 GTTTTCAAAATTCTCAGGATGTTTGTC 58.457 33.333 0.00 0.00 37.40 3.18
2787 3111 6.493115 TGATAAATGAACCTTTTCTTGCCTGA 59.507 34.615 0.00 0.00 32.36 3.86
2907 3235 1.806542 CGAACTGTGGCTGCAATACTT 59.193 47.619 0.50 0.00 0.00 2.24
3013 3688 1.133823 TGCAAAGAGGTGGCAAGAGAA 60.134 47.619 0.00 0.00 34.05 2.87
3053 3728 4.964897 TCTGAGAAAGATTGCAGGATCCTA 59.035 41.667 15.67 0.00 0.00 2.94
3056 3731 4.335037 GGTTCTGAGAAAGATTGCAGGATC 59.665 45.833 0.00 0.00 33.93 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.