Multiple sequence alignment - TraesCS6A01G081600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G081600 chr6A 100.000 5208 0 0 1 5208 49998430 49993223 0.000000e+00 9618.0
1 TraesCS6A01G081600 chrUn 97.331 4496 106 4 712 5207 115033239 115037720 0.000000e+00 7625.0
2 TraesCS6A01G081600 chrUn 74.506 506 72 33 4312 4808 63662623 63663080 3.230000e-37 167.0
3 TraesCS6A01G081600 chr6B 96.675 4511 136 6 709 5207 89440329 89435821 0.000000e+00 7487.0
4 TraesCS6A01G081600 chr6B 80.349 229 32 10 79 296 45772567 45772341 1.500000e-35 161.0
5 TraesCS6A01G081600 chr6B 75.694 288 50 8 399 681 256483749 256483477 5.470000e-25 126.0
6 TraesCS6A01G081600 chr2B 79.514 288 48 9 91 368 685734280 685734566 1.480000e-45 195.0
7 TraesCS6A01G081600 chr2B 76.736 288 46 13 33 301 723047496 723047211 1.960000e-29 141.0
8 TraesCS6A01G081600 chr5D 79.231 260 38 11 48 296 548308127 548307873 3.230000e-37 167.0
9 TraesCS6A01G081600 chr5D 79.600 250 30 13 4564 4808 454809373 454809606 5.400000e-35 159.0
10 TraesCS6A01G081600 chr5D 81.301 123 18 3 285 404 341030286 341030166 1.540000e-15 95.3
11 TraesCS6A01G081600 chr5B 77.023 309 48 15 10 296 402738978 402739285 6.980000e-34 156.0
12 TraesCS6A01G081600 chr5B 83.333 120 18 2 4690 4808 556958961 556959079 5.510000e-20 110.0
13 TraesCS6A01G081600 chr3D 77.133 293 49 14 20 296 8687757 8688047 2.510000e-33 154.0
14 TraesCS6A01G081600 chr3D 81.679 131 23 1 279 408 14347176 14347306 1.980000e-19 108.0
15 TraesCS6A01G081600 chr3D 94.286 35 2 0 415 449 572556336 572556302 3.000000e-03 54.7
16 TraesCS6A01G081600 chr2D 78.486 251 42 10 55 296 24449306 24449553 2.510000e-33 154.0
17 TraesCS6A01G081600 chr2D 77.606 259 47 7 50 301 322856090 322855836 4.200000e-31 147.0
18 TraesCS6A01G081600 chr2D 75.845 207 25 13 386 571 378759689 378759487 1.200000e-11 82.4
19 TraesCS6A01G081600 chr7A 77.778 261 42 13 53 301 674066852 674067108 4.200000e-31 147.0
20 TraesCS6A01G081600 chr5A 83.333 126 20 1 279 404 30859615 30859491 1.190000e-21 115.0
21 TraesCS6A01G081600 chr5A 82.308 130 22 1 279 408 597424194 597424322 1.530000e-20 111.0
22 TraesCS6A01G081600 chr5A 79.747 79 13 2 388 463 57662607 57662529 3.000000e-03 54.7
23 TraesCS6A01G081600 chr1A 83.333 126 19 2 279 404 264374005 264373882 1.190000e-21 115.0
24 TraesCS6A01G081600 chr1A 81.600 125 21 2 285 408 549883683 549883560 9.230000e-18 102.0
25 TraesCS6A01G081600 chr7D 82.051 117 20 1 279 394 97297684 97297568 1.190000e-16 99.0
26 TraesCS6A01G081600 chr1D 80.741 135 19 5 279 409 37966747 37966616 1.190000e-16 99.0
27 TraesCS6A01G081600 chr3B 84.483 58 7 2 387 443 135358680 135358736 7.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G081600 chr6A 49993223 49998430 5207 True 9618 9618 100.000 1 5208 1 chr6A.!!$R1 5207
1 TraesCS6A01G081600 chrUn 115033239 115037720 4481 False 7625 7625 97.331 712 5207 1 chrUn.!!$F2 4495
2 TraesCS6A01G081600 chr6B 89435821 89440329 4508 True 7487 7487 96.675 709 5207 1 chr6B.!!$R2 4498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 604 0.023732 CGTTTAGAGCGCGACACATG 59.976 55.000 12.10 0.00 0.0 3.21 F
656 657 0.038166 TGTGATTGTTGGGGAGGCTC 59.962 55.000 5.78 5.78 0.0 4.70 F
657 658 0.329596 GTGATTGTTGGGGAGGCTCT 59.670 55.000 15.23 0.00 0.0 4.09 F
659 660 0.462759 GATTGTTGGGGAGGCTCTCG 60.463 60.000 15.23 0.00 0.0 4.04 F
2134 2138 0.482446 TTGCAAGTTGGGGAGGATGT 59.518 50.000 4.75 0.00 0.0 3.06 F
2289 2293 1.065709 GTAAGGAATGGGTTCGCAGGA 60.066 52.381 0.00 0.00 35.1 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2164 0.325671 TCACCCCTCTGTCCTCCATC 60.326 60.000 0.00 0.00 0.00 3.51 R
2332 2336 1.941975 TGCATCATCAATAGCACCACG 59.058 47.619 0.00 0.00 31.05 4.94 R
2512 2516 5.183140 ACAGCCCATTGATAACTGTGTTAAC 59.817 40.000 0.00 0.00 39.97 2.01 R
2806 2810 9.042450 TCCATAAGTGACTGTATTAGGAGAAAA 57.958 33.333 0.00 0.00 0.00 2.29 R
3000 3004 0.678950 TCATGTCTGTGCCGACAAGA 59.321 50.000 4.95 3.85 46.00 3.02 R
4422 4427 4.053469 ACAACAATAACACCTGGTTTGC 57.947 40.909 8.52 0.00 40.96 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.369546 AAAAACTGAACCGGAAGCATG 57.630 42.857 9.46 0.00 0.00 4.06
54 55 1.981256 AAACTGAACCGGAAGCATGT 58.019 45.000 9.46 0.00 0.00 3.21
55 56 1.981256 AACTGAACCGGAAGCATGTT 58.019 45.000 9.46 2.34 0.00 2.71
56 57 1.981256 ACTGAACCGGAAGCATGTTT 58.019 45.000 9.46 0.00 0.00 2.83
57 58 2.306847 ACTGAACCGGAAGCATGTTTT 58.693 42.857 9.46 0.00 0.00 2.43
58 59 2.693074 ACTGAACCGGAAGCATGTTTTT 59.307 40.909 9.46 0.00 0.00 1.94
75 76 3.963383 TTTTTCTTTCGTGAGAGGCAC 57.037 42.857 0.00 0.00 43.69 5.01
83 84 1.282875 GTGAGAGGCACGGTTTTGC 59.717 57.895 0.00 0.00 42.18 3.68
84 85 1.148273 TGAGAGGCACGGTTTTGCT 59.852 52.632 0.00 0.00 42.56 3.91
85 86 0.465460 TGAGAGGCACGGTTTTGCTT 60.465 50.000 0.00 0.00 42.56 3.91
86 87 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
87 88 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
92 93 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
93 94 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
94 95 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
95 96 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
130 131 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
131 132 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
132 133 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
133 134 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
134 135 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
135 136 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
136 137 1.166531 AGCAAAACCGTGCCTCTCAC 61.167 55.000 0.00 0.00 46.14 3.51
143 144 4.361253 GTGCCTCTCACGAAAGCA 57.639 55.556 0.00 0.00 35.76 3.91
144 145 2.616969 GTGCCTCTCACGAAAGCAA 58.383 52.632 0.00 0.00 35.76 3.91
145 146 0.944386 GTGCCTCTCACGAAAGCAAA 59.056 50.000 0.00 0.00 35.76 3.68
146 147 1.333619 GTGCCTCTCACGAAAGCAAAA 59.666 47.619 0.00 0.00 35.76 2.44
147 148 2.020720 TGCCTCTCACGAAAGCAAAAA 58.979 42.857 0.00 0.00 0.00 1.94
186 187 3.443045 CGGGAGGCACAACCATGC 61.443 66.667 0.00 0.00 45.34 4.06
192 193 3.181367 GCACAACCATGCCTCTCG 58.819 61.111 0.00 0.00 39.86 4.04
193 194 1.672356 GCACAACCATGCCTCTCGT 60.672 57.895 0.00 0.00 39.86 4.18
194 195 1.915614 GCACAACCATGCCTCTCGTG 61.916 60.000 0.00 0.00 39.86 4.35
195 196 0.603707 CACAACCATGCCTCTCGTGT 60.604 55.000 0.00 0.00 0.00 4.49
196 197 0.973632 ACAACCATGCCTCTCGTGTA 59.026 50.000 0.00 0.00 0.00 2.90
197 198 1.346395 ACAACCATGCCTCTCGTGTAA 59.654 47.619 0.00 0.00 0.00 2.41
198 199 2.002586 CAACCATGCCTCTCGTGTAAG 58.997 52.381 0.00 0.00 0.00 2.34
199 200 1.267121 ACCATGCCTCTCGTGTAAGT 58.733 50.000 0.00 0.00 0.00 2.24
200 201 2.453521 ACCATGCCTCTCGTGTAAGTA 58.546 47.619 0.00 0.00 0.00 2.24
201 202 2.165845 ACCATGCCTCTCGTGTAAGTAC 59.834 50.000 0.00 0.00 0.00 2.73
202 203 2.165641 CCATGCCTCTCGTGTAAGTACA 59.834 50.000 0.00 0.00 0.00 2.90
203 204 3.368013 CCATGCCTCTCGTGTAAGTACAA 60.368 47.826 0.00 0.00 38.04 2.41
204 205 4.433615 CATGCCTCTCGTGTAAGTACAAT 58.566 43.478 0.00 0.00 38.04 2.71
205 206 4.530710 TGCCTCTCGTGTAAGTACAATT 57.469 40.909 0.00 0.00 38.04 2.32
206 207 4.242475 TGCCTCTCGTGTAAGTACAATTG 58.758 43.478 3.24 3.24 38.04 2.32
207 208 4.243270 GCCTCTCGTGTAAGTACAATTGT 58.757 43.478 16.68 16.68 38.04 2.71
208 209 4.091509 GCCTCTCGTGTAAGTACAATTGTG 59.908 45.833 21.42 1.63 38.04 3.33
209 210 4.091509 CCTCTCGTGTAAGTACAATTGTGC 59.908 45.833 21.42 19.58 38.04 4.57
210 211 4.878439 TCTCGTGTAAGTACAATTGTGCT 58.122 39.130 21.80 21.80 42.80 4.40
212 213 5.404366 TCTCGTGTAAGTACAATTGTGCTTC 59.596 40.000 35.40 27.12 45.60 3.86
213 214 5.294356 TCGTGTAAGTACAATTGTGCTTCT 58.706 37.500 35.40 21.37 45.60 2.85
214 215 5.404366 TCGTGTAAGTACAATTGTGCTTCTC 59.596 40.000 35.40 28.71 45.60 2.87
215 216 5.609088 GTGTAAGTACAATTGTGCTTCTCG 58.391 41.667 35.40 0.00 45.60 4.04
216 217 5.176958 GTGTAAGTACAATTGTGCTTCTCGT 59.823 40.000 35.40 20.13 45.60 4.18
217 218 4.732285 AAGTACAATTGTGCTTCTCGTG 57.268 40.909 29.35 0.00 45.60 4.35
218 219 3.067106 AGTACAATTGTGCTTCTCGTGG 58.933 45.455 21.80 0.00 37.74 4.94
219 220 2.254546 ACAATTGTGCTTCTCGTGGA 57.745 45.000 11.07 0.00 0.00 4.02
220 221 2.571212 ACAATTGTGCTTCTCGTGGAA 58.429 42.857 11.07 0.00 0.00 3.53
221 222 7.941505 AAGTACAATTGTGCTTCTCGTGGAAG 61.942 42.308 29.35 13.58 45.60 3.46
231 232 5.283060 CTTCTCGTGGAAGTAAAACCATG 57.717 43.478 10.93 0.00 44.59 3.66
232 233 3.071479 TCTCGTGGAAGTAAAACCATGC 58.929 45.455 0.00 0.00 41.38 4.06
233 234 2.156098 TCGTGGAAGTAAAACCATGCC 58.844 47.619 0.00 0.00 41.38 4.40
234 235 2.159382 CGTGGAAGTAAAACCATGCCT 58.841 47.619 0.00 0.00 38.48 4.75
235 236 2.161609 CGTGGAAGTAAAACCATGCCTC 59.838 50.000 0.00 0.00 38.48 4.70
236 237 3.421844 GTGGAAGTAAAACCATGCCTCT 58.578 45.455 0.00 0.00 38.48 3.69
237 238 3.440522 GTGGAAGTAAAACCATGCCTCTC 59.559 47.826 0.00 0.00 38.48 3.20
238 239 3.073798 TGGAAGTAAAACCATGCCTCTCA 59.926 43.478 0.00 0.00 0.00 3.27
239 240 4.263905 TGGAAGTAAAACCATGCCTCTCAT 60.264 41.667 0.00 0.00 35.31 2.90
283 284 2.279517 CGAGAGGTATGCCCGTGC 60.280 66.667 0.00 0.00 38.74 5.34
284 285 2.109181 GAGAGGTATGCCCGTGCC 59.891 66.667 0.00 0.00 38.74 5.01
285 286 2.365635 AGAGGTATGCCCGTGCCT 60.366 61.111 0.00 0.00 36.87 4.75
286 287 2.109181 GAGGTATGCCCGTGCCTC 59.891 66.667 8.55 8.55 42.47 4.70
287 288 2.365635 AGGTATGCCCGTGCCTCT 60.366 61.111 0.00 0.00 38.74 3.69
288 289 2.109181 GGTATGCCCGTGCCTCTC 59.891 66.667 0.00 0.00 36.33 3.20
289 290 2.731571 GGTATGCCCGTGCCTCTCA 61.732 63.158 0.00 0.00 36.33 3.27
290 291 1.521681 GTATGCCCGTGCCTCTCAC 60.522 63.158 0.00 0.00 42.23 3.51
300 301 3.963383 GTGCCTCTCACGAAAGAAAAA 57.037 42.857 0.00 0.00 35.76 1.94
356 357 4.467084 GCCATGTCCCTCGCGGAA 62.467 66.667 6.13 0.00 44.47 4.30
357 358 2.202932 CCATGTCCCTCGCGGAAG 60.203 66.667 6.13 0.00 44.47 3.46
369 370 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
370 371 2.050442 GGAAGCAAAACCGTGCCG 60.050 61.111 0.00 0.00 46.14 5.69
371 372 2.729491 GAAGCAAAACCGTGCCGC 60.729 61.111 0.00 0.00 46.14 6.53
372 373 3.194272 GAAGCAAAACCGTGCCGCT 62.194 57.895 0.00 0.00 46.14 5.52
373 374 1.847890 GAAGCAAAACCGTGCCGCTA 61.848 55.000 0.00 0.00 46.14 4.26
374 375 1.448922 AAGCAAAACCGTGCCGCTAA 61.449 50.000 0.00 0.00 46.14 3.09
375 376 1.728074 GCAAAACCGTGCCGCTAAC 60.728 57.895 0.00 0.00 38.66 2.34
376 377 1.439693 CAAAACCGTGCCGCTAACG 60.440 57.895 0.00 0.00 40.70 3.18
377 378 1.594836 AAAACCGTGCCGCTAACGA 60.595 52.632 4.90 0.00 43.68 3.85
378 379 1.159098 AAAACCGTGCCGCTAACGAA 61.159 50.000 4.90 0.00 43.68 3.85
379 380 1.159098 AAACCGTGCCGCTAACGAAA 61.159 50.000 4.90 0.00 43.68 3.46
380 381 1.562575 AACCGTGCCGCTAACGAAAG 61.563 55.000 4.90 0.00 43.68 2.62
381 382 1.735198 CCGTGCCGCTAACGAAAGA 60.735 57.895 4.90 0.00 43.68 2.52
382 383 1.286354 CCGTGCCGCTAACGAAAGAA 61.286 55.000 4.90 0.00 43.68 2.52
383 384 0.509499 CGTGCCGCTAACGAAAGAAA 59.491 50.000 0.00 0.00 43.68 2.52
384 385 1.070443 CGTGCCGCTAACGAAAGAAAA 60.070 47.619 0.00 0.00 43.68 2.29
385 386 2.600320 CGTGCCGCTAACGAAAGAAAAA 60.600 45.455 0.00 0.00 43.68 1.94
386 387 2.717519 GTGCCGCTAACGAAAGAAAAAC 59.282 45.455 0.00 0.00 43.93 2.43
387 388 2.287129 TGCCGCTAACGAAAGAAAAACC 60.287 45.455 0.00 0.00 43.93 3.27
388 389 2.567067 CCGCTAACGAAAGAAAAACCG 58.433 47.619 0.00 0.00 43.93 4.44
389 390 2.032636 CCGCTAACGAAAGAAAAACCGT 60.033 45.455 0.00 0.00 43.93 4.83
390 391 2.962191 CGCTAACGAAAGAAAAACCGTG 59.038 45.455 0.00 0.00 43.93 4.94
391 392 3.544637 CGCTAACGAAAGAAAAACCGTGT 60.545 43.478 0.00 0.00 43.93 4.49
392 393 3.964347 GCTAACGAAAGAAAAACCGTGTC 59.036 43.478 0.00 0.00 35.28 3.67
393 394 4.260497 GCTAACGAAAGAAAAACCGTGTCT 60.260 41.667 0.00 0.00 35.28 3.41
394 395 3.938778 ACGAAAGAAAAACCGTGTCTC 57.061 42.857 0.00 0.00 33.69 3.36
395 396 3.528532 ACGAAAGAAAAACCGTGTCTCT 58.471 40.909 0.00 0.00 33.69 3.10
396 397 3.554731 ACGAAAGAAAAACCGTGTCTCTC 59.445 43.478 0.00 0.00 33.69 3.20
397 398 3.361724 CGAAAGAAAAACCGTGTCTCTCG 60.362 47.826 0.00 0.00 0.00 4.04
398 399 1.499049 AGAAAAACCGTGTCTCTCGC 58.501 50.000 0.00 0.00 0.00 5.03
399 400 1.202486 AGAAAAACCGTGTCTCTCGCA 60.202 47.619 0.00 0.00 0.00 5.10
400 401 1.192534 GAAAAACCGTGTCTCTCGCAG 59.807 52.381 0.00 0.00 0.00 5.18
401 402 0.387929 AAAACCGTGTCTCTCGCAGA 59.612 50.000 0.00 0.00 0.00 4.26
402 403 0.387929 AAACCGTGTCTCTCGCAGAA 59.612 50.000 0.00 0.00 34.09 3.02
403 404 0.387929 AACCGTGTCTCTCGCAGAAA 59.612 50.000 0.00 0.00 34.09 2.52
404 405 0.318784 ACCGTGTCTCTCGCAGAAAC 60.319 55.000 0.00 0.00 36.10 2.78
405 406 0.318699 CCGTGTCTCTCGCAGAAACA 60.319 55.000 5.63 0.00 39.19 2.83
406 407 1.487482 CGTGTCTCTCGCAGAAACAA 58.513 50.000 5.63 0.00 39.19 2.83
407 408 1.858458 CGTGTCTCTCGCAGAAACAAA 59.142 47.619 5.63 0.00 39.19 2.83
408 409 2.476619 CGTGTCTCTCGCAGAAACAAAT 59.523 45.455 5.63 0.00 39.19 2.32
409 410 3.059597 CGTGTCTCTCGCAGAAACAAATT 60.060 43.478 5.63 0.00 39.19 1.82
410 411 4.552767 CGTGTCTCTCGCAGAAACAAATTT 60.553 41.667 5.63 0.00 39.19 1.82
411 412 5.333035 CGTGTCTCTCGCAGAAACAAATTTA 60.333 40.000 5.63 0.00 39.19 1.40
412 413 6.603095 GTGTCTCTCGCAGAAACAAATTTAT 58.397 36.000 0.00 0.00 39.07 1.40
413 414 7.411480 CGTGTCTCTCGCAGAAACAAATTTATA 60.411 37.037 5.63 0.00 39.19 0.98
414 415 7.688578 GTGTCTCTCGCAGAAACAAATTTATAC 59.311 37.037 0.00 0.00 39.07 1.47
415 416 7.148474 TGTCTCTCGCAGAAACAAATTTATACC 60.148 37.037 0.00 0.00 34.09 2.73
416 417 7.064728 GTCTCTCGCAGAAACAAATTTATACCT 59.935 37.037 0.00 0.00 34.09 3.08
417 418 7.277981 TCTCTCGCAGAAACAAATTTATACCTC 59.722 37.037 0.00 0.00 34.09 3.85
418 419 7.103641 TCTCGCAGAAACAAATTTATACCTCT 58.896 34.615 0.00 0.00 34.09 3.69
419 420 7.606456 TCTCGCAGAAACAAATTTATACCTCTT 59.394 33.333 0.00 0.00 34.09 2.85
420 421 7.526608 TCGCAGAAACAAATTTATACCTCTTG 58.473 34.615 0.00 0.00 0.00 3.02
421 422 7.174253 TCGCAGAAACAAATTTATACCTCTTGT 59.826 33.333 0.00 0.00 0.00 3.16
422 423 7.271223 CGCAGAAACAAATTTATACCTCTTGTG 59.729 37.037 0.00 0.00 30.90 3.33
423 424 7.542130 GCAGAAACAAATTTATACCTCTTGTGG 59.458 37.037 0.00 0.00 30.90 4.17
424 425 8.792633 CAGAAACAAATTTATACCTCTTGTGGA 58.207 33.333 0.00 0.00 30.90 4.02
425 426 9.362151 AGAAACAAATTTATACCTCTTGTGGAA 57.638 29.630 0.00 0.00 30.90 3.53
426 427 9.626045 GAAACAAATTTATACCTCTTGTGGAAG 57.374 33.333 0.00 0.00 30.90 3.46
427 428 7.158099 ACAAATTTATACCTCTTGTGGAAGC 57.842 36.000 0.00 0.00 0.00 3.86
428 429 6.719370 ACAAATTTATACCTCTTGTGGAAGCA 59.281 34.615 0.00 0.00 0.00 3.91
429 430 7.232534 ACAAATTTATACCTCTTGTGGAAGCAA 59.767 33.333 0.00 0.00 0.00 3.91
430 431 7.775053 AATTTATACCTCTTGTGGAAGCAAA 57.225 32.000 0.00 0.00 0.00 3.68
431 432 7.775053 ATTTATACCTCTTGTGGAAGCAAAA 57.225 32.000 0.00 0.00 0.00 2.44
432 433 6.569179 TTATACCTCTTGTGGAAGCAAAAC 57.431 37.500 0.00 0.00 0.00 2.43
433 434 2.031870 ACCTCTTGTGGAAGCAAAACC 58.968 47.619 0.00 0.00 0.00 3.27
434 435 2.031120 CCTCTTGTGGAAGCAAAACCA 58.969 47.619 0.00 0.00 0.00 3.67
435 436 2.629617 CCTCTTGTGGAAGCAAAACCAT 59.370 45.455 0.00 0.00 38.48 3.55
436 437 3.553508 CCTCTTGTGGAAGCAAAACCATG 60.554 47.826 0.00 0.00 38.48 3.66
437 438 2.137523 CTTGTGGAAGCAAAACCATGC 58.862 47.619 0.00 0.00 46.78 4.06
455 456 3.598019 TGCCTCTCATGGAAAAATTGC 57.402 42.857 0.00 0.00 0.00 3.56
456 457 2.094597 TGCCTCTCATGGAAAAATTGCG 60.095 45.455 0.00 0.00 0.00 4.85
457 458 2.094545 GCCTCTCATGGAAAAATTGCGT 60.095 45.455 0.00 0.00 0.00 5.24
458 459 3.614870 GCCTCTCATGGAAAAATTGCGTT 60.615 43.478 0.00 0.00 0.00 4.84
459 460 4.559153 CCTCTCATGGAAAAATTGCGTTT 58.441 39.130 0.00 0.00 0.00 3.60
460 461 4.990426 CCTCTCATGGAAAAATTGCGTTTT 59.010 37.500 0.00 0.00 41.69 2.43
513 514 8.702163 TTTGAAAAGCTAAGAAAGAAAAGTGG 57.298 30.769 0.00 0.00 0.00 4.00
514 515 7.639113 TGAAAAGCTAAGAAAGAAAAGTGGA 57.361 32.000 0.00 0.00 0.00 4.02
515 516 8.062065 TGAAAAGCTAAGAAAGAAAAGTGGAA 57.938 30.769 0.00 0.00 0.00 3.53
516 517 8.527810 TGAAAAGCTAAGAAAGAAAAGTGGAAA 58.472 29.630 0.00 0.00 0.00 3.13
517 518 9.366216 GAAAAGCTAAGAAAGAAAAGTGGAAAA 57.634 29.630 0.00 0.00 0.00 2.29
518 519 8.703604 AAAGCTAAGAAAGAAAAGTGGAAAAC 57.296 30.769 0.00 0.00 0.00 2.43
519 520 7.646548 AGCTAAGAAAGAAAAGTGGAAAACT 57.353 32.000 0.00 0.00 42.60 2.66
520 521 7.484140 AGCTAAGAAAGAAAAGTGGAAAACTG 58.516 34.615 0.00 0.00 39.81 3.16
521 522 7.339466 AGCTAAGAAAGAAAAGTGGAAAACTGA 59.661 33.333 0.00 0.00 39.81 3.41
522 523 7.973944 GCTAAGAAAGAAAAGTGGAAAACTGAA 59.026 33.333 0.00 0.00 39.81 3.02
523 524 9.855021 CTAAGAAAGAAAAGTGGAAAACTGAAA 57.145 29.630 0.00 0.00 39.81 2.69
524 525 8.763049 AAGAAAGAAAAGTGGAAAACTGAAAG 57.237 30.769 0.00 0.00 39.81 2.62
525 526 7.323420 AGAAAGAAAAGTGGAAAACTGAAAGG 58.677 34.615 0.00 0.00 39.81 3.11
526 527 5.011090 AGAAAAGTGGAAAACTGAAAGGC 57.989 39.130 0.00 0.00 39.81 4.35
527 528 3.436700 AAAGTGGAAAACTGAAAGGCG 57.563 42.857 0.00 0.00 39.81 5.52
528 529 2.341846 AGTGGAAAACTGAAAGGCGA 57.658 45.000 0.00 0.00 37.88 5.54
529 530 2.650322 AGTGGAAAACTGAAAGGCGAA 58.350 42.857 0.00 0.00 37.88 4.70
530 531 3.020984 AGTGGAAAACTGAAAGGCGAAA 58.979 40.909 0.00 0.00 37.88 3.46
531 532 3.066760 AGTGGAAAACTGAAAGGCGAAAG 59.933 43.478 0.00 0.00 37.88 2.62
532 533 3.066203 GTGGAAAACTGAAAGGCGAAAGA 59.934 43.478 0.00 0.00 39.30 2.52
533 534 3.888930 TGGAAAACTGAAAGGCGAAAGAT 59.111 39.130 0.00 0.00 39.30 2.40
534 535 4.023193 TGGAAAACTGAAAGGCGAAAGATC 60.023 41.667 0.00 0.00 39.30 2.75
535 536 4.023193 GGAAAACTGAAAGGCGAAAGATCA 60.023 41.667 0.00 0.00 39.30 2.92
536 537 5.335976 GGAAAACTGAAAGGCGAAAGATCAT 60.336 40.000 0.00 0.00 39.30 2.45
537 538 4.954092 AACTGAAAGGCGAAAGATCATC 57.046 40.909 0.00 0.00 39.30 2.92
538 539 4.213564 ACTGAAAGGCGAAAGATCATCT 57.786 40.909 0.00 0.00 39.30 2.90
539 540 5.344743 ACTGAAAGGCGAAAGATCATCTA 57.655 39.130 0.00 0.00 39.30 1.98
540 541 5.734720 ACTGAAAGGCGAAAGATCATCTAA 58.265 37.500 0.00 0.00 39.30 2.10
541 542 6.173339 ACTGAAAGGCGAAAGATCATCTAAA 58.827 36.000 0.00 0.00 39.30 1.85
542 543 6.655003 ACTGAAAGGCGAAAGATCATCTAAAA 59.345 34.615 0.00 0.00 39.30 1.52
543 544 7.174946 ACTGAAAGGCGAAAGATCATCTAAAAA 59.825 33.333 0.00 0.00 39.30 1.94
544 545 7.530010 TGAAAGGCGAAAGATCATCTAAAAAG 58.470 34.615 0.00 0.00 0.00 2.27
545 546 5.491635 AGGCGAAAGATCATCTAAAAAGC 57.508 39.130 0.00 0.00 0.00 3.51
546 547 4.336713 AGGCGAAAGATCATCTAAAAAGCC 59.663 41.667 10.05 10.05 39.90 4.35
547 548 4.096382 GGCGAAAGATCATCTAAAAAGCCA 59.904 41.667 12.13 0.00 39.44 4.75
548 549 5.393027 GGCGAAAGATCATCTAAAAAGCCAA 60.393 40.000 12.13 0.00 39.44 4.52
549 550 6.092748 GCGAAAGATCATCTAAAAAGCCAAA 58.907 36.000 0.00 0.00 0.00 3.28
550 551 6.586082 GCGAAAGATCATCTAAAAAGCCAAAA 59.414 34.615 0.00 0.00 0.00 2.44
551 552 7.116233 GCGAAAGATCATCTAAAAAGCCAAAAA 59.884 33.333 0.00 0.00 0.00 1.94
552 553 9.143631 CGAAAGATCATCTAAAAAGCCAAAAAT 57.856 29.630 0.00 0.00 0.00 1.82
555 556 9.573133 AAGATCATCTAAAAAGCCAAAAATACG 57.427 29.630 0.00 0.00 0.00 3.06
556 557 8.739972 AGATCATCTAAAAAGCCAAAAATACGT 58.260 29.630 0.00 0.00 0.00 3.57
557 558 8.687824 ATCATCTAAAAAGCCAAAAATACGTG 57.312 30.769 0.00 0.00 0.00 4.49
558 559 6.584563 TCATCTAAAAAGCCAAAAATACGTGC 59.415 34.615 0.00 0.00 0.00 5.34
559 560 4.912766 TCTAAAAAGCCAAAAATACGTGCG 59.087 37.500 0.00 0.00 0.00 5.34
560 561 2.058913 AAAGCCAAAAATACGTGCGG 57.941 45.000 0.00 0.00 0.00 5.69
561 562 1.240256 AAGCCAAAAATACGTGCGGA 58.760 45.000 0.00 0.00 0.00 5.54
562 563 1.240256 AGCCAAAAATACGTGCGGAA 58.760 45.000 0.00 0.00 0.00 4.30
563 564 1.609555 AGCCAAAAATACGTGCGGAAA 59.390 42.857 0.00 0.00 0.00 3.13
564 565 2.034812 AGCCAAAAATACGTGCGGAAAA 59.965 40.909 0.00 0.00 0.00 2.29
565 566 2.795470 GCCAAAAATACGTGCGGAAAAA 59.205 40.909 0.00 0.00 0.00 1.94
566 567 3.430556 GCCAAAAATACGTGCGGAAAAAT 59.569 39.130 0.00 0.00 0.00 1.82
567 568 4.621886 GCCAAAAATACGTGCGGAAAAATA 59.378 37.500 0.00 0.00 0.00 1.40
568 569 5.118817 GCCAAAAATACGTGCGGAAAAATAA 59.881 36.000 0.00 0.00 0.00 1.40
569 570 6.183360 GCCAAAAATACGTGCGGAAAAATAAT 60.183 34.615 0.00 0.00 0.00 1.28
570 571 7.622464 GCCAAAAATACGTGCGGAAAAATAATT 60.622 33.333 0.00 0.00 0.00 1.40
571 572 8.224437 CCAAAAATACGTGCGGAAAAATAATTT 58.776 29.630 0.00 0.00 0.00 1.82
572 573 9.587461 CAAAAATACGTGCGGAAAAATAATTTT 57.413 25.926 0.00 0.00 41.37 1.82
593 594 4.992381 TTTCAGAAAGAGCGTTTAGAGC 57.008 40.909 0.00 0.00 0.00 4.09
594 595 2.596452 TCAGAAAGAGCGTTTAGAGCG 58.404 47.619 0.00 0.00 40.04 5.03
600 601 2.390670 GCGTTTAGAGCGCGACAC 59.609 61.111 12.10 0.00 45.36 3.67
601 602 2.369629 GCGTTTAGAGCGCGACACA 61.370 57.895 12.10 0.00 45.36 3.72
602 603 1.683790 GCGTTTAGAGCGCGACACAT 61.684 55.000 12.10 0.00 45.36 3.21
603 604 0.023732 CGTTTAGAGCGCGACACATG 59.976 55.000 12.10 0.00 0.00 3.21
604 605 0.370273 GTTTAGAGCGCGACACATGG 59.630 55.000 12.10 0.00 0.00 3.66
605 606 1.358725 TTTAGAGCGCGACACATGGC 61.359 55.000 12.10 0.00 0.00 4.40
628 629 4.389576 CTGTGGCGCGCTTTCACC 62.390 66.667 32.29 13.79 0.00 4.02
633 634 4.179579 GCGCGCTTTCACCCCATC 62.180 66.667 26.67 0.00 0.00 3.51
634 635 3.508840 CGCGCTTTCACCCCATCC 61.509 66.667 5.56 0.00 0.00 3.51
635 636 3.140814 GCGCTTTCACCCCATCCC 61.141 66.667 0.00 0.00 0.00 3.85
636 637 2.354729 CGCTTTCACCCCATCCCA 59.645 61.111 0.00 0.00 0.00 4.37
637 638 1.076777 CGCTTTCACCCCATCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
638 639 1.386525 CGCTTTCACCCCATCCCATG 61.387 60.000 0.00 0.00 0.00 3.66
639 640 0.324645 GCTTTCACCCCATCCCATGT 60.325 55.000 0.00 0.00 0.00 3.21
640 641 1.477553 CTTTCACCCCATCCCATGTG 58.522 55.000 0.00 0.00 0.00 3.21
641 642 1.005805 CTTTCACCCCATCCCATGTGA 59.994 52.381 0.00 0.00 36.04 3.58
642 643 1.307878 TTCACCCCATCCCATGTGAT 58.692 50.000 0.00 0.00 37.55 3.06
643 644 1.307878 TCACCCCATCCCATGTGATT 58.692 50.000 0.00 0.00 33.09 2.57
644 645 1.063792 TCACCCCATCCCATGTGATTG 60.064 52.381 0.00 0.00 33.09 2.67
645 646 1.009997 ACCCCATCCCATGTGATTGT 58.990 50.000 0.00 0.00 0.00 2.71
646 647 1.362237 ACCCCATCCCATGTGATTGTT 59.638 47.619 0.00 0.00 0.00 2.83
647 648 1.758280 CCCCATCCCATGTGATTGTTG 59.242 52.381 0.00 0.00 0.00 3.33
648 649 1.758280 CCCATCCCATGTGATTGTTGG 59.242 52.381 0.00 0.00 0.00 3.77
651 652 3.687847 CCCATGTGATTGTTGGGGA 57.312 52.632 0.00 0.00 45.37 4.81
652 653 1.477553 CCCATGTGATTGTTGGGGAG 58.522 55.000 0.00 0.00 45.37 4.30
653 654 1.477553 CCATGTGATTGTTGGGGAGG 58.522 55.000 0.00 0.00 0.00 4.30
654 655 0.819582 CATGTGATTGTTGGGGAGGC 59.180 55.000 0.00 0.00 0.00 4.70
655 656 0.706433 ATGTGATTGTTGGGGAGGCT 59.294 50.000 0.00 0.00 0.00 4.58
656 657 0.038166 TGTGATTGTTGGGGAGGCTC 59.962 55.000 5.78 5.78 0.00 4.70
657 658 0.329596 GTGATTGTTGGGGAGGCTCT 59.670 55.000 15.23 0.00 0.00 4.09
658 659 0.620556 TGATTGTTGGGGAGGCTCTC 59.379 55.000 15.23 10.83 0.00 3.20
659 660 0.462759 GATTGTTGGGGAGGCTCTCG 60.463 60.000 15.23 0.00 0.00 4.04
660 661 0.909610 ATTGTTGGGGAGGCTCTCGA 60.910 55.000 15.23 4.31 0.00 4.04
661 662 1.125093 TTGTTGGGGAGGCTCTCGAA 61.125 55.000 15.23 11.52 0.00 3.71
662 663 1.219393 GTTGGGGAGGCTCTCGAAG 59.781 63.158 12.45 0.00 0.00 3.79
663 664 1.990060 TTGGGGAGGCTCTCGAAGG 60.990 63.158 15.23 0.00 0.00 3.46
664 665 2.042843 GGGGAGGCTCTCGAAGGA 60.043 66.667 15.23 0.00 0.00 3.36
665 666 2.131067 GGGGAGGCTCTCGAAGGAG 61.131 68.421 15.23 0.00 41.89 3.69
681 682 2.262423 GGAGCACTCCTCAACAGTTT 57.738 50.000 9.54 0.00 46.16 2.66
682 683 2.576615 GGAGCACTCCTCAACAGTTTT 58.423 47.619 9.54 0.00 46.16 2.43
683 684 2.952310 GGAGCACTCCTCAACAGTTTTT 59.048 45.455 9.54 0.00 46.16 1.94
704 705 2.286732 AGGGGAATGCTCCTGGCT 60.287 61.111 0.00 0.00 45.77 4.75
705 706 2.123982 GGGGAATGCTCCTGGCTG 60.124 66.667 0.00 0.00 42.05 4.85
706 707 2.123982 GGGAATGCTCCTGGCTGG 60.124 66.667 3.65 3.65 42.05 4.85
707 708 2.832201 GGAATGCTCCTGGCTGGC 60.832 66.667 5.39 0.00 42.39 4.85
733 734 8.367943 TCTAAGAGACTTCGATGTACAGTATC 57.632 38.462 3.63 2.42 0.00 2.24
774 775 4.693566 CGAGCCGGCCTTATTGAATTTATA 59.306 41.667 26.15 0.00 0.00 0.98
781 782 5.243060 GGCCTTATTGAATTTATAACGGGCT 59.757 40.000 15.96 0.00 33.04 5.19
882 886 1.228644 TTCTTCTCCGACCACCCGA 60.229 57.895 0.00 0.00 0.00 5.14
1125 1129 1.730501 CGACCGACACCACTCTACTA 58.269 55.000 0.00 0.00 0.00 1.82
1275 1279 2.747855 CACCTCTTCCGCCTTGCC 60.748 66.667 0.00 0.00 0.00 4.52
1539 1543 3.756434 TGTTCGATGAAATGGGGAAGTTC 59.244 43.478 0.00 0.00 33.41 3.01
1711 1715 3.813724 GCAGGGATGGGAGGGTGG 61.814 72.222 0.00 0.00 0.00 4.61
1716 1720 2.763215 GATGGGAGGGTGGCACAA 59.237 61.111 20.82 0.00 44.16 3.33
1739 1743 0.517316 GTGGATTTCGTGCAGGACAC 59.483 55.000 8.96 10.07 46.45 3.67
1800 1804 2.173782 TGCGGTTATGGATGGGTATTGT 59.826 45.455 0.00 0.00 0.00 2.71
1813 1817 2.434702 GGGTATTGTGGAGTAGGACAGG 59.565 54.545 0.00 0.00 0.00 4.00
1831 1835 3.452786 CCGAGGCTGCGAGAAGGA 61.453 66.667 0.00 0.00 0.00 3.36
1849 1853 2.373169 AGGATTTTGCTGTCACTGGAGA 59.627 45.455 0.00 0.00 0.00 3.71
1850 1854 2.746362 GGATTTTGCTGTCACTGGAGAG 59.254 50.000 0.00 0.00 37.48 3.20
2134 2138 0.482446 TTGCAAGTTGGGGAGGATGT 59.518 50.000 4.75 0.00 0.00 3.06
2160 2164 8.888579 TTGAAGTAGAGAAACTTTTACAGGAG 57.111 34.615 0.00 0.00 39.78 3.69
2169 2173 4.828072 ACTTTTACAGGAGATGGAGGAC 57.172 45.455 0.00 0.00 0.00 3.85
2252 2256 2.738314 GTTCCATGAACAAGGCATTTGC 59.262 45.455 0.00 0.00 41.62 3.68
2289 2293 1.065709 GTAAGGAATGGGTTCGCAGGA 60.066 52.381 0.00 0.00 35.10 3.86
2331 2335 4.022416 ACGCTATTGAATGGTTTTTGCTCA 60.022 37.500 0.00 0.00 0.00 4.26
2332 2336 4.324402 CGCTATTGAATGGTTTTTGCTCAC 59.676 41.667 0.00 0.00 0.00 3.51
2382 2386 5.034852 TGTGGTTCTTGATGTTGAAGAGA 57.965 39.130 0.00 0.00 31.17 3.10
2512 2516 2.841215 TGGGAAGAAACGTGGTTACAG 58.159 47.619 0.00 0.00 0.00 2.74
2806 2810 3.896888 TGTTGAAATGACTGCAAAGGGAT 59.103 39.130 0.00 0.00 0.00 3.85
2881 2885 3.217599 GCAATCTGCATGATGCCTATG 57.782 47.619 15.70 9.71 44.23 2.23
2900 2904 7.495279 TGCCTATGATTTGTATTTTGAAATGGC 59.505 33.333 0.00 0.00 31.92 4.40
2989 2993 5.511202 GGAAAGGTTGATGAGGCAAATTTGA 60.511 40.000 22.31 0.76 0.00 2.69
3009 3013 2.132740 TGTTGCAAAATCTTGTCGGC 57.867 45.000 0.00 0.00 34.79 5.54
3025 3029 1.003003 TCGGCACAGACATGATTCCAA 59.997 47.619 0.00 0.00 0.00 3.53
3087 3091 2.229543 TGTCATTGAATCTGTTGCTGGC 59.770 45.455 0.00 0.00 0.00 4.85
3300 3304 2.406616 GGATGCGATGTTGGGCGTT 61.407 57.895 0.00 0.00 0.00 4.84
3318 3322 4.272748 GGCGTTGGTCTTACTCCAAATATC 59.727 45.833 0.00 0.00 44.91 1.63
3861 3865 7.595819 TTTCATTACTTGGAAGATGTTGGTT 57.404 32.000 0.00 0.00 0.00 3.67
3895 3899 4.278919 TGCATGAGAAAGCAAATCACAAGA 59.721 37.500 0.00 0.00 37.90 3.02
4047 4052 6.223852 TGTTTCACAAACCAGCTTTTTGTAA 58.776 32.000 18.53 10.65 43.71 2.41
4091 4096 4.154942 AGGTGAATGCACTGGAAGAAAAT 58.845 39.130 3.21 0.00 44.52 1.82
4263 4268 5.669164 AGAAGAGGATGAAGGTAACACTC 57.331 43.478 0.00 0.00 41.41 3.51
4316 4321 3.686726 GCACTCTTGGGTGATAGTCTTTG 59.313 47.826 4.63 0.00 39.34 2.77
4331 4336 9.040259 TGATAGTCTTTGATATAGATGGAAGGG 57.960 37.037 0.00 0.00 0.00 3.95
4373 4378 6.015350 TGTTGGGTTTAAGTGTTCTTTTCACA 60.015 34.615 0.00 0.00 38.16 3.58
4422 4427 9.831737 CCTTTGAGTTGTTGTCTATTTAATCAG 57.168 33.333 0.00 0.00 0.00 2.90
4655 4660 8.405531 TCTAAGAACAATTGTTTTGGTGAAGAG 58.594 33.333 24.02 12.04 38.56 2.85
4848 4853 2.886523 GCCTCCATTATATGCTGCACAA 59.113 45.455 3.57 0.00 0.00 3.33
4910 4915 4.645136 ACATCATGCAATGCTCTTCATTCT 59.355 37.500 6.82 0.00 46.21 2.40
5207 5220 4.991687 CGAATAGCCTCCTGGTAAATTCTC 59.008 45.833 0.00 0.00 35.27 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.693074 ACATGCTTCCGGTTCAGTTTTT 59.307 40.909 0.00 0.00 0.00 1.94
34 35 2.306847 ACATGCTTCCGGTTCAGTTTT 58.693 42.857 0.00 0.00 0.00 2.43
35 36 1.981256 ACATGCTTCCGGTTCAGTTT 58.019 45.000 0.00 0.00 0.00 2.66
36 37 1.981256 AACATGCTTCCGGTTCAGTT 58.019 45.000 0.00 0.00 0.00 3.16
37 38 1.981256 AAACATGCTTCCGGTTCAGT 58.019 45.000 0.00 0.00 0.00 3.41
38 39 3.369546 AAAAACATGCTTCCGGTTCAG 57.630 42.857 0.00 0.00 0.00 3.02
55 56 3.963383 GTGCCTCTCACGAAAGAAAAA 57.037 42.857 0.00 0.00 35.76 1.94
65 66 1.166531 AGCAAAACCGTGCCTCTCAC 61.167 55.000 0.00 0.00 46.14 3.51
66 67 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
67 68 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
68 69 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
69 70 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
70 71 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
71 72 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
106 107 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
107 108 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
108 109 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
109 110 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
114 115 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
115 116 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
116 117 0.465460 TGAGAGGCACGGTTTTGCTT 60.465 50.000 0.00 0.00 42.56 3.91
117 118 1.148273 TGAGAGGCACGGTTTTGCT 59.852 52.632 0.00 0.00 42.56 3.91
118 119 1.282875 GTGAGAGGCACGGTTTTGC 59.717 57.895 0.00 0.00 42.18 3.68
126 127 0.944386 TTTGCTTTCGTGAGAGGCAC 59.056 50.000 0.00 0.00 45.26 5.01
127 128 1.674359 TTTTGCTTTCGTGAGAGGCA 58.326 45.000 0.00 0.00 44.45 4.75
128 129 2.774439 TTTTTGCTTTCGTGAGAGGC 57.226 45.000 0.00 0.00 43.69 4.70
157 158 3.086282 GTGCCTCCCGGAAATAGAAAAA 58.914 45.455 0.73 0.00 0.00 1.94
158 159 2.040545 TGTGCCTCCCGGAAATAGAAAA 59.959 45.455 0.73 0.00 0.00 2.29
159 160 1.631388 TGTGCCTCCCGGAAATAGAAA 59.369 47.619 0.73 0.00 0.00 2.52
160 161 1.281419 TGTGCCTCCCGGAAATAGAA 58.719 50.000 0.73 0.00 0.00 2.10
161 162 1.065709 GTTGTGCCTCCCGGAAATAGA 60.066 52.381 0.73 0.00 0.00 1.98
162 163 1.379527 GTTGTGCCTCCCGGAAATAG 58.620 55.000 0.73 0.00 0.00 1.73
163 164 0.034863 GGTTGTGCCTCCCGGAAATA 60.035 55.000 0.73 0.00 0.00 1.40
164 165 1.304134 GGTTGTGCCTCCCGGAAAT 60.304 57.895 0.73 0.00 0.00 2.17
165 166 2.075355 ATGGTTGTGCCTCCCGGAAA 62.075 55.000 0.73 0.00 38.35 3.13
166 167 2.534396 ATGGTTGTGCCTCCCGGAA 61.534 57.895 0.73 0.00 38.35 4.30
167 168 2.933287 ATGGTTGTGCCTCCCGGA 60.933 61.111 0.73 0.00 38.35 5.14
168 169 2.751436 CATGGTTGTGCCTCCCGG 60.751 66.667 0.00 0.00 38.35 5.73
169 170 3.443045 GCATGGTTGTGCCTCCCG 61.443 66.667 0.00 0.00 39.18 5.14
175 176 1.672356 ACGAGAGGCATGGTTGTGC 60.672 57.895 0.00 0.00 44.31 4.57
176 177 0.603707 ACACGAGAGGCATGGTTGTG 60.604 55.000 0.00 0.00 0.00 3.33
177 178 0.973632 TACACGAGAGGCATGGTTGT 59.026 50.000 0.00 0.00 0.00 3.32
178 179 2.002586 CTTACACGAGAGGCATGGTTG 58.997 52.381 0.00 0.00 0.00 3.77
179 180 1.623811 ACTTACACGAGAGGCATGGTT 59.376 47.619 0.00 0.00 0.00 3.67
180 181 1.267121 ACTTACACGAGAGGCATGGT 58.733 50.000 0.00 0.00 0.00 3.55
181 182 2.165641 TGTACTTACACGAGAGGCATGG 59.834 50.000 0.00 0.00 0.00 3.66
182 183 3.503827 TGTACTTACACGAGAGGCATG 57.496 47.619 0.00 0.00 0.00 4.06
183 184 4.737855 ATTGTACTTACACGAGAGGCAT 57.262 40.909 0.00 0.00 35.64 4.40
184 185 4.242475 CAATTGTACTTACACGAGAGGCA 58.758 43.478 0.00 0.00 35.64 4.75
185 186 4.091509 CACAATTGTACTTACACGAGAGGC 59.908 45.833 11.53 0.00 35.64 4.70
186 187 4.091509 GCACAATTGTACTTACACGAGAGG 59.908 45.833 11.53 0.00 35.64 3.69
187 188 4.923871 AGCACAATTGTACTTACACGAGAG 59.076 41.667 11.53 0.00 35.64 3.20
188 189 4.878439 AGCACAATTGTACTTACACGAGA 58.122 39.130 11.53 0.00 35.64 4.04
189 190 5.405571 AGAAGCACAATTGTACTTACACGAG 59.594 40.000 21.35 2.86 35.64 4.18
190 191 5.294356 AGAAGCACAATTGTACTTACACGA 58.706 37.500 21.35 0.00 35.64 4.35
191 192 5.591643 AGAAGCACAATTGTACTTACACG 57.408 39.130 21.35 4.23 35.64 4.49
192 193 5.176958 ACGAGAAGCACAATTGTACTTACAC 59.823 40.000 21.35 14.66 35.64 2.90
193 194 5.176774 CACGAGAAGCACAATTGTACTTACA 59.823 40.000 21.35 0.00 32.16 2.41
194 195 5.389516 CCACGAGAAGCACAATTGTACTTAC 60.390 44.000 21.35 16.90 32.16 2.34
195 196 4.688879 CCACGAGAAGCACAATTGTACTTA 59.311 41.667 21.35 0.00 32.16 2.24
196 197 3.498397 CCACGAGAAGCACAATTGTACTT 59.502 43.478 21.45 21.45 34.54 2.24
197 198 3.067106 CCACGAGAAGCACAATTGTACT 58.933 45.455 11.53 8.31 0.00 2.73
198 199 3.064207 TCCACGAGAAGCACAATTGTAC 58.936 45.455 11.53 5.61 0.00 2.90
199 200 3.394674 TCCACGAGAAGCACAATTGTA 57.605 42.857 11.53 0.00 0.00 2.41
200 201 2.254546 TCCACGAGAAGCACAATTGT 57.745 45.000 4.92 4.92 0.00 2.71
201 202 3.193157 CTTCCACGAGAAGCACAATTG 57.807 47.619 3.24 3.24 45.38 2.32
210 211 3.500680 GCATGGTTTTACTTCCACGAGAA 59.499 43.478 0.00 0.00 36.50 2.87
211 212 3.071479 GCATGGTTTTACTTCCACGAGA 58.929 45.455 0.00 0.00 36.50 4.04
212 213 2.161609 GGCATGGTTTTACTTCCACGAG 59.838 50.000 0.00 0.00 36.50 4.18
213 214 2.156098 GGCATGGTTTTACTTCCACGA 58.844 47.619 0.00 0.00 36.50 4.35
214 215 2.159382 AGGCATGGTTTTACTTCCACG 58.841 47.619 0.00 0.00 36.50 4.94
215 216 3.421844 AGAGGCATGGTTTTACTTCCAC 58.578 45.455 0.00 0.00 36.50 4.02
216 217 3.073798 TGAGAGGCATGGTTTTACTTCCA 59.926 43.478 0.00 0.00 38.14 3.53
217 218 3.686016 TGAGAGGCATGGTTTTACTTCC 58.314 45.455 0.00 0.00 0.00 3.46
260 261 0.529992 GGGCATACCTCTCGGAAACG 60.530 60.000 0.00 0.00 46.88 3.60
261 262 0.529992 CGGGCATACCTCTCGGAAAC 60.530 60.000 0.00 0.00 36.97 2.78
262 263 0.974010 ACGGGCATACCTCTCGGAAA 60.974 55.000 0.00 0.00 36.97 3.13
263 264 1.380785 ACGGGCATACCTCTCGGAA 60.381 57.895 0.00 0.00 36.97 4.30
264 265 2.125326 CACGGGCATACCTCTCGGA 61.125 63.158 0.00 0.00 36.97 4.55
265 266 2.417516 CACGGGCATACCTCTCGG 59.582 66.667 0.00 0.00 36.97 4.63
266 267 2.279517 GCACGGGCATACCTCTCG 60.280 66.667 3.77 0.00 40.72 4.04
267 268 2.109181 GGCACGGGCATACCTCTC 59.891 66.667 13.89 0.00 43.71 3.20
268 269 2.365635 AGGCACGGGCATACCTCT 60.366 61.111 13.89 0.00 43.71 3.69
269 270 2.109181 GAGGCACGGGCATACCTC 59.891 66.667 13.89 4.66 43.71 3.85
270 271 2.365635 AGAGGCACGGGCATACCT 60.366 61.111 13.89 0.00 43.71 3.08
271 272 2.109181 GAGAGGCACGGGCATACC 59.891 66.667 13.89 0.00 43.71 2.73
272 273 1.521681 GTGAGAGGCACGGGCATAC 60.522 63.158 13.89 2.46 43.71 2.39
273 274 2.900273 GTGAGAGGCACGGGCATA 59.100 61.111 13.89 0.00 43.71 3.14
280 281 3.963383 TTTTTCTTTCGTGAGAGGCAC 57.037 42.857 0.00 0.00 43.69 5.01
348 349 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
365 366 2.673976 TTTTCTTTCGTTAGCGGCAC 57.326 45.000 1.45 0.00 38.89 5.01
366 367 2.287129 GGTTTTTCTTTCGTTAGCGGCA 60.287 45.455 1.45 0.00 38.89 5.69
367 368 2.313234 GGTTTTTCTTTCGTTAGCGGC 58.687 47.619 0.00 0.00 38.89 6.53
368 369 2.032636 ACGGTTTTTCTTTCGTTAGCGG 60.033 45.455 0.00 0.00 38.89 5.52
369 370 2.962191 CACGGTTTTTCTTTCGTTAGCG 59.038 45.455 0.00 0.00 39.92 4.26
370 371 3.943958 ACACGGTTTTTCTTTCGTTAGC 58.056 40.909 0.00 0.00 33.31 3.09
371 372 5.233689 AGAGACACGGTTTTTCTTTCGTTAG 59.766 40.000 0.00 0.00 33.31 2.34
372 373 5.111293 AGAGACACGGTTTTTCTTTCGTTA 58.889 37.500 0.00 0.00 33.31 3.18
373 374 3.937079 AGAGACACGGTTTTTCTTTCGTT 59.063 39.130 0.00 0.00 33.31 3.85
374 375 3.528532 AGAGACACGGTTTTTCTTTCGT 58.471 40.909 0.00 0.00 36.19 3.85
375 376 3.361724 CGAGAGACACGGTTTTTCTTTCG 60.362 47.826 8.68 8.68 37.56 3.46
376 377 3.604085 GCGAGAGACACGGTTTTTCTTTC 60.604 47.826 0.00 0.00 0.00 2.62
377 378 2.287103 GCGAGAGACACGGTTTTTCTTT 59.713 45.455 0.00 0.00 0.00 2.52
378 379 1.865340 GCGAGAGACACGGTTTTTCTT 59.135 47.619 0.00 0.00 0.00 2.52
379 380 1.202486 TGCGAGAGACACGGTTTTTCT 60.202 47.619 0.00 0.00 0.00 2.52
380 381 1.192534 CTGCGAGAGACACGGTTTTTC 59.807 52.381 0.00 0.00 0.00 2.29
381 382 1.202486 TCTGCGAGAGACACGGTTTTT 60.202 47.619 0.00 0.00 0.00 1.94
382 383 0.387929 TCTGCGAGAGACACGGTTTT 59.612 50.000 0.00 0.00 0.00 2.43
383 384 0.387929 TTCTGCGAGAGACACGGTTT 59.612 50.000 0.00 0.00 0.00 3.27
384 385 0.387929 TTTCTGCGAGAGACACGGTT 59.612 50.000 0.00 0.00 0.00 4.44
385 386 0.318784 GTTTCTGCGAGAGACACGGT 60.319 55.000 0.00 0.00 30.45 4.83
386 387 0.318699 TGTTTCTGCGAGAGACACGG 60.319 55.000 5.73 0.00 34.84 4.94
387 388 1.487482 TTGTTTCTGCGAGAGACACG 58.513 50.000 8.39 0.00 38.80 4.49
388 389 4.474226 AATTTGTTTCTGCGAGAGACAC 57.526 40.909 8.39 2.23 38.80 3.67
389 390 6.801539 ATAAATTTGTTTCTGCGAGAGACA 57.198 33.333 0.00 5.73 37.53 3.41
390 391 7.064728 AGGTATAAATTTGTTTCTGCGAGAGAC 59.935 37.037 0.00 0.00 30.70 3.36
391 392 7.103641 AGGTATAAATTTGTTTCTGCGAGAGA 58.896 34.615 0.00 0.00 0.00 3.10
392 393 7.278868 AGAGGTATAAATTTGTTTCTGCGAGAG 59.721 37.037 0.00 0.00 0.00 3.20
393 394 7.103641 AGAGGTATAAATTTGTTTCTGCGAGA 58.896 34.615 0.00 0.00 0.00 4.04
394 395 7.308782 AGAGGTATAAATTTGTTTCTGCGAG 57.691 36.000 0.00 0.00 0.00 5.03
395 396 7.174253 ACAAGAGGTATAAATTTGTTTCTGCGA 59.826 33.333 0.00 0.00 0.00 5.10
396 397 7.271223 CACAAGAGGTATAAATTTGTTTCTGCG 59.729 37.037 0.00 0.00 30.15 5.18
397 398 7.542130 CCACAAGAGGTATAAATTTGTTTCTGC 59.458 37.037 0.00 0.00 30.15 4.26
398 399 8.792633 TCCACAAGAGGTATAAATTTGTTTCTG 58.207 33.333 0.00 0.00 30.15 3.02
399 400 8.934023 TCCACAAGAGGTATAAATTTGTTTCT 57.066 30.769 0.00 0.00 30.15 2.52
400 401 9.626045 CTTCCACAAGAGGTATAAATTTGTTTC 57.374 33.333 0.00 0.00 30.15 2.78
401 402 8.088365 GCTTCCACAAGAGGTATAAATTTGTTT 58.912 33.333 0.00 0.00 30.15 2.83
402 403 7.232534 TGCTTCCACAAGAGGTATAAATTTGTT 59.767 33.333 0.00 0.00 30.15 2.83
403 404 6.719370 TGCTTCCACAAGAGGTATAAATTTGT 59.281 34.615 0.00 0.00 32.60 2.83
404 405 7.156876 TGCTTCCACAAGAGGTATAAATTTG 57.843 36.000 0.00 0.00 0.00 2.32
405 406 7.775053 TTGCTTCCACAAGAGGTATAAATTT 57.225 32.000 0.00 0.00 0.00 1.82
406 407 7.775053 TTTGCTTCCACAAGAGGTATAAATT 57.225 32.000 0.00 0.00 0.00 1.82
407 408 7.309805 GGTTTTGCTTCCACAAGAGGTATAAAT 60.310 37.037 0.00 0.00 0.00 1.40
408 409 6.015772 GGTTTTGCTTCCACAAGAGGTATAAA 60.016 38.462 0.00 0.00 0.00 1.40
409 410 5.475564 GGTTTTGCTTCCACAAGAGGTATAA 59.524 40.000 0.00 0.00 0.00 0.98
410 411 5.007682 GGTTTTGCTTCCACAAGAGGTATA 58.992 41.667 0.00 0.00 0.00 1.47
411 412 3.826729 GGTTTTGCTTCCACAAGAGGTAT 59.173 43.478 0.00 0.00 0.00 2.73
412 413 3.219281 GGTTTTGCTTCCACAAGAGGTA 58.781 45.455 0.00 0.00 0.00 3.08
413 414 2.031870 GGTTTTGCTTCCACAAGAGGT 58.968 47.619 0.00 0.00 0.00 3.85
414 415 2.031120 TGGTTTTGCTTCCACAAGAGG 58.969 47.619 0.00 0.00 0.00 3.69
415 416 3.645884 CATGGTTTTGCTTCCACAAGAG 58.354 45.455 0.00 0.00 36.50 2.85
416 417 2.224018 GCATGGTTTTGCTTCCACAAGA 60.224 45.455 0.00 0.00 39.57 3.02
417 418 2.137523 GCATGGTTTTGCTTCCACAAG 58.862 47.619 0.00 0.00 39.57 3.16
418 419 1.202627 GGCATGGTTTTGCTTCCACAA 60.203 47.619 0.00 0.00 42.38 3.33
419 420 0.392336 GGCATGGTTTTGCTTCCACA 59.608 50.000 0.00 0.00 42.38 4.17
420 421 0.681175 AGGCATGGTTTTGCTTCCAC 59.319 50.000 0.00 0.00 42.38 4.02
421 422 0.968405 GAGGCATGGTTTTGCTTCCA 59.032 50.000 0.00 0.00 41.44 3.53
422 423 1.203287 GAGAGGCATGGTTTTGCTTCC 59.797 52.381 5.12 0.00 46.61 3.46
423 424 1.888512 TGAGAGGCATGGTTTTGCTTC 59.111 47.619 0.00 0.80 46.00 3.86
424 425 1.999648 TGAGAGGCATGGTTTTGCTT 58.000 45.000 0.00 0.00 42.38 3.91
425 426 2.226962 ATGAGAGGCATGGTTTTGCT 57.773 45.000 0.00 0.00 42.38 3.91
434 435 3.429822 CGCAATTTTTCCATGAGAGGCAT 60.430 43.478 0.00 0.00 37.85 4.40
435 436 2.094597 CGCAATTTTTCCATGAGAGGCA 60.095 45.455 0.00 0.00 0.00 4.75
436 437 2.094545 ACGCAATTTTTCCATGAGAGGC 60.095 45.455 0.00 0.00 0.00 4.70
437 438 3.855689 ACGCAATTTTTCCATGAGAGG 57.144 42.857 0.00 0.00 0.00 3.69
438 439 6.529463 AAAAACGCAATTTTTCCATGAGAG 57.471 33.333 0.00 0.00 45.51 3.20
487 488 9.150348 CCACTTTTCTTTCTTAGCTTTTCAAAA 57.850 29.630 0.00 0.00 0.00 2.44
488 489 8.527810 TCCACTTTTCTTTCTTAGCTTTTCAAA 58.472 29.630 0.00 0.00 0.00 2.69
489 490 8.062065 TCCACTTTTCTTTCTTAGCTTTTCAA 57.938 30.769 0.00 0.00 0.00 2.69
490 491 7.639113 TCCACTTTTCTTTCTTAGCTTTTCA 57.361 32.000 0.00 0.00 0.00 2.69
491 492 8.926715 TTTCCACTTTTCTTTCTTAGCTTTTC 57.073 30.769 0.00 0.00 0.00 2.29
492 493 9.151471 GTTTTCCACTTTTCTTTCTTAGCTTTT 57.849 29.630 0.00 0.00 0.00 2.27
493 494 8.531982 AGTTTTCCACTTTTCTTTCTTAGCTTT 58.468 29.630 0.00 0.00 27.32 3.51
494 495 7.976175 CAGTTTTCCACTTTTCTTTCTTAGCTT 59.024 33.333 0.00 0.00 30.92 3.74
495 496 7.339466 TCAGTTTTCCACTTTTCTTTCTTAGCT 59.661 33.333 0.00 0.00 30.92 3.32
496 497 7.480810 TCAGTTTTCCACTTTTCTTTCTTAGC 58.519 34.615 0.00 0.00 30.92 3.09
497 498 9.855021 TTTCAGTTTTCCACTTTTCTTTCTTAG 57.145 29.630 0.00 0.00 30.92 2.18
498 499 9.855021 CTTTCAGTTTTCCACTTTTCTTTCTTA 57.145 29.630 0.00 0.00 30.92 2.10
499 500 7.819415 CCTTTCAGTTTTCCACTTTTCTTTCTT 59.181 33.333 0.00 0.00 30.92 2.52
500 501 7.323420 CCTTTCAGTTTTCCACTTTTCTTTCT 58.677 34.615 0.00 0.00 30.92 2.52
501 502 6.036083 GCCTTTCAGTTTTCCACTTTTCTTTC 59.964 38.462 0.00 0.00 30.92 2.62
502 503 5.874810 GCCTTTCAGTTTTCCACTTTTCTTT 59.125 36.000 0.00 0.00 30.92 2.52
503 504 5.419542 GCCTTTCAGTTTTCCACTTTTCTT 58.580 37.500 0.00 0.00 30.92 2.52
504 505 4.440112 CGCCTTTCAGTTTTCCACTTTTCT 60.440 41.667 0.00 0.00 30.92 2.52
505 506 3.796717 CGCCTTTCAGTTTTCCACTTTTC 59.203 43.478 0.00 0.00 30.92 2.29
506 507 3.445805 TCGCCTTTCAGTTTTCCACTTTT 59.554 39.130 0.00 0.00 30.92 2.27
507 508 3.020984 TCGCCTTTCAGTTTTCCACTTT 58.979 40.909 0.00 0.00 30.92 2.66
508 509 2.650322 TCGCCTTTCAGTTTTCCACTT 58.350 42.857 0.00 0.00 30.92 3.16
509 510 2.341846 TCGCCTTTCAGTTTTCCACT 57.658 45.000 0.00 0.00 35.35 4.00
510 511 3.066203 TCTTTCGCCTTTCAGTTTTCCAC 59.934 43.478 0.00 0.00 0.00 4.02
511 512 3.283751 TCTTTCGCCTTTCAGTTTTCCA 58.716 40.909 0.00 0.00 0.00 3.53
512 513 3.982576 TCTTTCGCCTTTCAGTTTTCC 57.017 42.857 0.00 0.00 0.00 3.13
513 514 5.108385 TGATCTTTCGCCTTTCAGTTTTC 57.892 39.130 0.00 0.00 0.00 2.29
514 515 5.474876 AGATGATCTTTCGCCTTTCAGTTTT 59.525 36.000 0.00 0.00 0.00 2.43
515 516 5.006386 AGATGATCTTTCGCCTTTCAGTTT 58.994 37.500 0.00 0.00 0.00 2.66
516 517 4.583871 AGATGATCTTTCGCCTTTCAGTT 58.416 39.130 0.00 0.00 0.00 3.16
517 518 4.213564 AGATGATCTTTCGCCTTTCAGT 57.786 40.909 0.00 0.00 0.00 3.41
518 519 6.668541 TTTAGATGATCTTTCGCCTTTCAG 57.331 37.500 0.00 0.00 0.00 3.02
519 520 7.447374 TTTTTAGATGATCTTTCGCCTTTCA 57.553 32.000 0.00 0.00 0.00 2.69
520 521 6.470556 GCTTTTTAGATGATCTTTCGCCTTTC 59.529 38.462 0.00 0.00 0.00 2.62
521 522 6.325596 GCTTTTTAGATGATCTTTCGCCTTT 58.674 36.000 0.00 0.00 0.00 3.11
522 523 5.163612 GGCTTTTTAGATGATCTTTCGCCTT 60.164 40.000 0.00 0.00 0.00 4.35
523 524 4.336713 GGCTTTTTAGATGATCTTTCGCCT 59.663 41.667 0.00 0.00 0.00 5.52
524 525 4.096382 TGGCTTTTTAGATGATCTTTCGCC 59.904 41.667 0.00 7.07 0.00 5.54
525 526 5.235305 TGGCTTTTTAGATGATCTTTCGC 57.765 39.130 0.00 0.00 0.00 4.70
526 527 8.519492 TTTTTGGCTTTTTAGATGATCTTTCG 57.481 30.769 0.00 0.00 0.00 3.46
529 530 9.573133 CGTATTTTTGGCTTTTTAGATGATCTT 57.427 29.630 0.00 0.00 0.00 2.40
530 531 8.739972 ACGTATTTTTGGCTTTTTAGATGATCT 58.260 29.630 0.00 0.00 0.00 2.75
531 532 8.798153 CACGTATTTTTGGCTTTTTAGATGATC 58.202 33.333 0.00 0.00 0.00 2.92
532 533 7.275560 GCACGTATTTTTGGCTTTTTAGATGAT 59.724 33.333 0.00 0.00 0.00 2.45
533 534 6.584563 GCACGTATTTTTGGCTTTTTAGATGA 59.415 34.615 0.00 0.00 0.00 2.92
534 535 6.452350 CGCACGTATTTTTGGCTTTTTAGATG 60.452 38.462 0.00 0.00 0.00 2.90
535 536 5.571357 CGCACGTATTTTTGGCTTTTTAGAT 59.429 36.000 0.00 0.00 0.00 1.98
536 537 4.912766 CGCACGTATTTTTGGCTTTTTAGA 59.087 37.500 0.00 0.00 0.00 2.10
537 538 4.089351 CCGCACGTATTTTTGGCTTTTTAG 59.911 41.667 0.00 0.00 0.00 1.85
538 539 3.982058 CCGCACGTATTTTTGGCTTTTTA 59.018 39.130 0.00 0.00 0.00 1.52
539 540 2.797719 CCGCACGTATTTTTGGCTTTTT 59.202 40.909 0.00 0.00 0.00 1.94
540 541 2.034812 TCCGCACGTATTTTTGGCTTTT 59.965 40.909 0.00 0.00 0.00 2.27
541 542 1.609555 TCCGCACGTATTTTTGGCTTT 59.390 42.857 0.00 0.00 0.00 3.51
542 543 1.240256 TCCGCACGTATTTTTGGCTT 58.760 45.000 0.00 0.00 0.00 4.35
543 544 1.240256 TTCCGCACGTATTTTTGGCT 58.760 45.000 0.00 0.00 0.00 4.75
544 545 2.053282 TTTCCGCACGTATTTTTGGC 57.947 45.000 0.00 0.00 0.00 4.52
545 546 6.692232 TTATTTTTCCGCACGTATTTTTGG 57.308 33.333 0.00 0.00 0.00 3.28
546 547 9.587461 AAAATTATTTTTCCGCACGTATTTTTG 57.413 25.926 0.00 0.00 28.82 2.44
570 571 5.558273 CGCTCTAAACGCTCTTTCTGAAAAA 60.558 40.000 4.18 0.00 0.00 1.94
571 572 4.084537 CGCTCTAAACGCTCTTTCTGAAAA 60.085 41.667 4.18 0.00 0.00 2.29
572 573 3.428870 CGCTCTAAACGCTCTTTCTGAAA 59.571 43.478 2.44 2.44 0.00 2.69
573 574 2.987149 CGCTCTAAACGCTCTTTCTGAA 59.013 45.455 0.00 0.00 0.00 3.02
574 575 2.596452 CGCTCTAAACGCTCTTTCTGA 58.404 47.619 0.00 0.00 0.00 3.27
584 585 0.023732 CATGTGTCGCGCTCTAAACG 59.976 55.000 5.56 0.00 0.00 3.60
585 586 0.370273 CCATGTGTCGCGCTCTAAAC 59.630 55.000 5.56 0.00 0.00 2.01
586 587 1.358725 GCCATGTGTCGCGCTCTAAA 61.359 55.000 5.56 0.00 0.00 1.85
587 588 1.809619 GCCATGTGTCGCGCTCTAA 60.810 57.895 5.56 0.00 0.00 2.10
588 589 2.202743 GCCATGTGTCGCGCTCTA 60.203 61.111 5.56 0.00 0.00 2.43
611 612 4.389576 GGTGAAAGCGCGCCACAG 62.390 66.667 30.57 0.00 38.32 3.66
619 620 1.076777 ATGGGATGGGGTGAAAGCG 60.077 57.895 0.00 0.00 33.03 4.68
620 621 0.324645 ACATGGGATGGGGTGAAAGC 60.325 55.000 0.00 0.00 33.60 3.51
621 622 1.005805 TCACATGGGATGGGGTGAAAG 59.994 52.381 0.00 0.00 37.33 2.62
622 623 1.079796 TCACATGGGATGGGGTGAAA 58.920 50.000 0.00 0.00 37.33 2.69
623 624 1.307878 ATCACATGGGATGGGGTGAA 58.692 50.000 10.38 0.00 42.83 3.18
624 625 1.063792 CAATCACATGGGATGGGGTGA 60.064 52.381 12.19 0.00 43.61 4.02
625 626 1.342275 ACAATCACATGGGATGGGGTG 60.342 52.381 16.90 11.12 33.47 4.61
626 627 1.009997 ACAATCACATGGGATGGGGT 58.990 50.000 16.90 10.33 33.47 4.95
627 628 1.758280 CAACAATCACATGGGATGGGG 59.242 52.381 16.90 9.71 33.47 4.96
628 629 1.758280 CCAACAATCACATGGGATGGG 59.242 52.381 16.90 12.12 34.11 4.00
634 635 1.477553 CCTCCCCAACAATCACATGG 58.522 55.000 0.00 0.00 0.00 3.66
635 636 0.819582 GCCTCCCCAACAATCACATG 59.180 55.000 0.00 0.00 0.00 3.21
636 637 0.706433 AGCCTCCCCAACAATCACAT 59.294 50.000 0.00 0.00 0.00 3.21
637 638 0.038166 GAGCCTCCCCAACAATCACA 59.962 55.000 0.00 0.00 0.00 3.58
638 639 0.329596 AGAGCCTCCCCAACAATCAC 59.670 55.000 0.00 0.00 0.00 3.06
639 640 0.620556 GAGAGCCTCCCCAACAATCA 59.379 55.000 0.00 0.00 0.00 2.57
640 641 0.462759 CGAGAGCCTCCCCAACAATC 60.463 60.000 0.00 0.00 0.00 2.67
641 642 0.909610 TCGAGAGCCTCCCCAACAAT 60.910 55.000 0.00 0.00 0.00 2.71
642 643 1.125093 TTCGAGAGCCTCCCCAACAA 61.125 55.000 0.00 0.00 0.00 2.83
643 644 1.535444 TTCGAGAGCCTCCCCAACA 60.535 57.895 0.00 0.00 0.00 3.33
644 645 1.219393 CTTCGAGAGCCTCCCCAAC 59.781 63.158 0.00 0.00 0.00 3.77
645 646 1.990060 CCTTCGAGAGCCTCCCCAA 60.990 63.158 0.00 0.00 0.00 4.12
646 647 2.364317 CCTTCGAGAGCCTCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
647 648 2.042843 TCCTTCGAGAGCCTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
648 649 3.532501 CTCCTTCGAGAGCCTCCC 58.467 66.667 0.00 0.00 38.52 4.30
682 683 2.888069 GCCAGGAGCATTCCCCTAAAAA 60.888 50.000 0.00 0.00 45.24 1.94
683 684 1.341976 GCCAGGAGCATTCCCCTAAAA 60.342 52.381 0.00 0.00 45.24 1.52
684 685 0.258774 GCCAGGAGCATTCCCCTAAA 59.741 55.000 0.00 0.00 45.24 1.85
685 686 1.922821 GCCAGGAGCATTCCCCTAA 59.077 57.895 0.00 0.00 45.24 2.69
686 687 3.660724 GCCAGGAGCATTCCCCTA 58.339 61.111 0.00 0.00 45.24 3.53
695 696 1.145819 CTTAGAGCCAGCCAGGAGC 59.854 63.158 0.00 0.00 41.22 4.70
696 697 0.752054 CTCTTAGAGCCAGCCAGGAG 59.248 60.000 0.00 0.00 41.22 3.69
697 698 0.336392 TCTCTTAGAGCCAGCCAGGA 59.664 55.000 4.03 0.00 41.22 3.86
698 699 0.463620 GTCTCTTAGAGCCAGCCAGG 59.536 60.000 4.03 0.00 41.84 4.45
699 700 1.484038 AGTCTCTTAGAGCCAGCCAG 58.516 55.000 4.03 0.00 0.00 4.85
700 701 1.827969 GAAGTCTCTTAGAGCCAGCCA 59.172 52.381 4.03 0.00 0.00 4.75
701 702 1.202359 CGAAGTCTCTTAGAGCCAGCC 60.202 57.143 4.03 0.00 0.00 4.85
702 703 1.746220 TCGAAGTCTCTTAGAGCCAGC 59.254 52.381 4.03 0.00 0.00 4.85
703 704 3.380004 ACATCGAAGTCTCTTAGAGCCAG 59.620 47.826 4.03 0.00 0.00 4.85
704 705 3.357203 ACATCGAAGTCTCTTAGAGCCA 58.643 45.455 4.03 0.00 0.00 4.75
705 706 4.335874 TGTACATCGAAGTCTCTTAGAGCC 59.664 45.833 4.03 0.00 0.00 4.70
706 707 5.065474 ACTGTACATCGAAGTCTCTTAGAGC 59.935 44.000 4.03 0.06 0.00 4.09
707 708 6.671614 ACTGTACATCGAAGTCTCTTAGAG 57.328 41.667 2.23 2.23 0.00 2.43
733 734 0.797249 CGCTAACCAGACGGAACTCG 60.797 60.000 0.00 0.00 45.88 4.18
774 775 2.933834 AACCTAGCCCAGCCCGTT 60.934 61.111 0.00 0.00 0.00 4.44
1314 1318 4.451150 GCGTGGGCGAGGATGTGA 62.451 66.667 0.00 0.00 41.33 3.58
1401 1405 1.004891 GAGGTGGGGGAAGAGGGAT 59.995 63.158 0.00 0.00 0.00 3.85
1711 1715 0.593128 ACGAAATCCACTGCTTGTGC 59.407 50.000 0.00 0.00 44.92 4.57
1716 1720 0.957395 CCTGCACGAAATCCACTGCT 60.957 55.000 0.00 0.00 0.00 4.24
1739 1743 1.680522 CTCCACACCCATCCTCTCCG 61.681 65.000 0.00 0.00 0.00 4.63
1800 1804 1.379977 CTCGGCCTGTCCTACTCCA 60.380 63.158 0.00 0.00 0.00 3.86
1831 1835 3.498774 ACTCTCCAGTGACAGCAAAAT 57.501 42.857 0.00 0.00 0.00 1.82
1849 1853 2.005370 TTCGGTGACAGACCCTTACT 57.995 50.000 0.00 0.00 42.62 2.24
1850 1854 2.028385 ACATTCGGTGACAGACCCTTAC 60.028 50.000 0.00 0.00 42.62 2.34
1872 1876 8.262227 CCCTTTACAAGTAAGGTATATGTCACA 58.738 37.037 0.00 0.00 0.00 3.58
2134 2138 9.326413 CTCCTGTAAAAGTTTCTCTACTTCAAA 57.674 33.333 0.00 0.00 37.37 2.69
2160 2164 0.325671 TCACCCCTCTGTCCTCCATC 60.326 60.000 0.00 0.00 0.00 3.51
2169 2173 2.461300 TATCCAGACTCACCCCTCTG 57.539 55.000 0.00 0.00 34.73 3.35
2252 2256 5.928976 TCCTTACCATCATATCACAGGTTG 58.071 41.667 0.00 0.00 33.91 3.77
2289 2293 8.712285 ATAGCGTGTTATATGTTAGTGTTGTT 57.288 30.769 0.00 0.00 0.00 2.83
2331 2335 1.942657 GCATCATCAATAGCACCACGT 59.057 47.619 0.00 0.00 0.00 4.49
2332 2336 1.941975 TGCATCATCAATAGCACCACG 59.058 47.619 0.00 0.00 31.05 4.94
2382 2386 6.100424 AGCTAATTTCATTAGGCACTACTCCT 59.900 38.462 5.81 0.00 42.67 3.69
2512 2516 5.183140 ACAGCCCATTGATAACTGTGTTAAC 59.817 40.000 0.00 0.00 39.97 2.01
2806 2810 9.042450 TCCATAAGTGACTGTATTAGGAGAAAA 57.958 33.333 0.00 0.00 0.00 2.29
2881 2885 6.329496 TCTCGGCCATTTCAAAATACAAATC 58.671 36.000 2.24 0.00 0.00 2.17
2900 2904 1.219393 GGAGCCAGACCTTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
2989 2993 2.035704 TGCCGACAAGATTTTGCAACAT 59.964 40.909 0.00 0.00 37.85 2.71
3000 3004 0.678950 TCATGTCTGTGCCGACAAGA 59.321 50.000 4.95 3.85 46.00 3.02
3009 3013 3.253921 TGCAGTTTGGAATCATGTCTGTG 59.746 43.478 0.00 0.00 0.00 3.66
3025 3029 1.226660 GCGTGTTTGCACTGCAGTT 60.227 52.632 18.94 0.00 43.16 3.16
3087 3091 4.424061 TTTTGCAGACTGATGATTTCCG 57.576 40.909 6.65 0.00 0.00 4.30
3300 3304 7.172868 TGTTACGATATTTGGAGTAAGACCA 57.827 36.000 0.00 0.00 35.47 4.02
3318 3322 9.133627 CCATAGATGAGAGAATTGTATGTTACG 57.866 37.037 0.00 0.00 0.00 3.18
3861 3865 4.336433 GCTTTCTCATGCAAGCCATAACTA 59.664 41.667 11.18 0.00 39.70 2.24
3895 3899 4.437682 TCATTGAAAGTTGAGGTGGAGT 57.562 40.909 0.00 0.00 0.00 3.85
4047 4052 5.942826 CCTAGACCTTTGAAGCTTCTGATTT 59.057 40.000 26.09 8.86 0.00 2.17
4263 4268 7.982224 TGAAGCTCTGAATGATGATACAAAAG 58.018 34.615 0.00 0.00 0.00 2.27
4373 4378 5.336690 GGCACATCCAAATACACTTGTGAAT 60.337 40.000 7.83 0.00 37.28 2.57
4422 4427 4.053469 ACAACAATAACACCTGGTTTGC 57.947 40.909 8.52 0.00 40.96 3.68
4655 4660 9.132521 GCATGTTACCTATATGCATTGAAAATC 57.867 33.333 3.54 0.00 44.88 2.17
4848 4853 5.716228 TGCACTTGACCATAAATCAGGATTT 59.284 36.000 11.59 11.59 42.95 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.