Multiple sequence alignment - TraesCS6A01G081300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G081300 chr6A 100.000 2398 0 0 1 2398 49776303 49778700 0.000000e+00 4429
1 TraesCS6A01G081300 chr6A 96.582 2194 54 12 88 2269 63104052 63106236 0.000000e+00 3616
2 TraesCS6A01G081300 chr6D 95.103 1552 55 5 88 1636 52289537 52291070 0.000000e+00 2425
3 TraesCS6A01G081300 chr6D 92.192 333 22 3 1644 1975 52291187 52291516 3.610000e-128 468
4 TraesCS6A01G081300 chr6D 97.710 131 3 0 2268 2398 128903234 128903104 2.400000e-55 226
5 TraesCS6A01G081300 chr6B 92.285 1335 62 18 891 2218 118967033 118968333 0.000000e+00 1857
6 TraesCS6A01G081300 chr6B 96.224 821 28 3 88 906 118959292 118960111 0.000000e+00 1341
7 TraesCS6A01G081300 chr2A 89.362 611 61 3 97 706 516707893 516708500 0.000000e+00 765
8 TraesCS6A01G081300 chr2A 86.620 142 17 1 974 1115 516708744 516708883 3.190000e-34 156
9 TraesCS6A01G081300 chr2B 98.473 131 2 0 2268 2398 657197987 657198117 5.160000e-57 231
10 TraesCS6A01G081300 chr1B 98.473 131 2 0 2268 2398 237009832 237009702 5.160000e-57 231
11 TraesCS6A01G081300 chr4A 98.462 130 2 0 2268 2397 606539282 606539411 1.850000e-56 230
12 TraesCS6A01G081300 chr4D 97.710 131 3 0 2268 2398 254241210 254241340 2.400000e-55 226
13 TraesCS6A01G081300 chr4D 97.710 131 3 0 2268 2398 405455133 405455263 2.400000e-55 226
14 TraesCS6A01G081300 chr4D 97.710 131 3 0 2268 2398 417644512 417644642 2.400000e-55 226
15 TraesCS6A01G081300 chr4D 97.710 131 3 0 2268 2398 443515155 443515285 2.400000e-55 226
16 TraesCS6A01G081300 chr4D 97.710 131 3 0 2268 2398 478512196 478512326 2.400000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G081300 chr6A 49776303 49778700 2397 False 4429.0 4429 100.0000 1 2398 1 chr6A.!!$F1 2397
1 TraesCS6A01G081300 chr6A 63104052 63106236 2184 False 3616.0 3616 96.5820 88 2269 1 chr6A.!!$F2 2181
2 TraesCS6A01G081300 chr6D 52289537 52291516 1979 False 1446.5 2425 93.6475 88 1975 2 chr6D.!!$F1 1887
3 TraesCS6A01G081300 chr6B 118967033 118968333 1300 False 1857.0 1857 92.2850 891 2218 1 chr6B.!!$F2 1327
4 TraesCS6A01G081300 chr6B 118959292 118960111 819 False 1341.0 1341 96.2240 88 906 1 chr6B.!!$F1 818
5 TraesCS6A01G081300 chr2A 516707893 516708883 990 False 460.5 765 87.9910 97 1115 2 chr2A.!!$F1 1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.031515 TATCTTCTCCGGGGGAAGCA 60.032 55.0 28.41 18.52 39.75 3.91 F
25 26 0.034089 CTTCTCCGGGGGAAGCAAAT 60.034 55.0 23.04 0.00 34.66 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 1358 1.354040 GTCTGCGTCCATCACTTCTG 58.646 55.000 0.00 0.00 0.0 3.02 R
1595 1654 1.374631 CTGCTGCAGTTCTGCGGTA 60.375 57.895 27.16 23.48 42.8 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.563039 AGTTATCTTCTCCGGGGGAA 57.437 50.000 9.43 9.43 0.00 3.97
20 21 2.399580 AGTTATCTTCTCCGGGGGAAG 58.600 52.381 27.54 27.54 40.85 3.46
21 22 1.129058 TTATCTTCTCCGGGGGAAGC 58.871 55.000 28.41 0.00 39.75 3.86
22 23 0.031515 TATCTTCTCCGGGGGAAGCA 60.032 55.000 28.41 18.52 39.75 3.91
23 24 0.914417 ATCTTCTCCGGGGGAAGCAA 60.914 55.000 28.41 15.17 39.75 3.91
24 25 1.131303 TCTTCTCCGGGGGAAGCAAA 61.131 55.000 28.41 11.68 39.75 3.68
25 26 0.034089 CTTCTCCGGGGGAAGCAAAT 60.034 55.000 23.04 0.00 34.66 2.32
26 27 0.323360 TTCTCCGGGGGAAGCAAATG 60.323 55.000 4.90 0.00 0.00 2.32
27 28 1.000896 CTCCGGGGGAAGCAAATGT 60.001 57.895 0.00 0.00 0.00 2.71
28 29 0.254747 CTCCGGGGGAAGCAAATGTA 59.745 55.000 0.00 0.00 0.00 2.29
29 30 0.699399 TCCGGGGGAAGCAAATGTAA 59.301 50.000 0.00 0.00 0.00 2.41
30 31 1.286553 TCCGGGGGAAGCAAATGTAAT 59.713 47.619 0.00 0.00 0.00 1.89
31 32 1.408702 CCGGGGGAAGCAAATGTAATG 59.591 52.381 0.00 0.00 0.00 1.90
32 33 1.408702 CGGGGGAAGCAAATGTAATGG 59.591 52.381 0.00 0.00 0.00 3.16
33 34 2.745968 GGGGGAAGCAAATGTAATGGA 58.254 47.619 0.00 0.00 0.00 3.41
34 35 2.695147 GGGGGAAGCAAATGTAATGGAG 59.305 50.000 0.00 0.00 0.00 3.86
35 36 3.365472 GGGGAAGCAAATGTAATGGAGT 58.635 45.455 0.00 0.00 0.00 3.85
36 37 3.131046 GGGGAAGCAAATGTAATGGAGTG 59.869 47.826 0.00 0.00 0.00 3.51
37 38 3.763897 GGGAAGCAAATGTAATGGAGTGT 59.236 43.478 0.00 0.00 0.00 3.55
38 39 4.380867 GGGAAGCAAATGTAATGGAGTGTG 60.381 45.833 0.00 0.00 0.00 3.82
39 40 4.458989 GGAAGCAAATGTAATGGAGTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
40 41 5.048083 GGAAGCAAATGTAATGGAGTGTGAA 60.048 40.000 0.00 0.00 0.00 3.18
41 42 6.350445 GGAAGCAAATGTAATGGAGTGTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
42 43 6.199937 AGCAAATGTAATGGAGTGTGAATC 57.800 37.500 0.00 0.00 0.00 2.52
43 44 5.126061 AGCAAATGTAATGGAGTGTGAATCC 59.874 40.000 0.00 0.00 37.35 3.01
44 45 5.126061 GCAAATGTAATGGAGTGTGAATCCT 59.874 40.000 0.00 0.00 37.74 3.24
45 46 6.350445 GCAAATGTAATGGAGTGTGAATCCTT 60.350 38.462 0.00 0.00 37.74 3.36
46 47 7.605449 CAAATGTAATGGAGTGTGAATCCTTT 58.395 34.615 0.00 0.00 37.74 3.11
47 48 6.764308 ATGTAATGGAGTGTGAATCCTTTG 57.236 37.500 0.00 0.00 37.74 2.77
48 49 5.009631 TGTAATGGAGTGTGAATCCTTTGG 58.990 41.667 0.00 0.00 37.74 3.28
49 50 4.387026 AATGGAGTGTGAATCCTTTGGA 57.613 40.909 0.00 0.00 37.74 3.53
50 51 4.598036 ATGGAGTGTGAATCCTTTGGAT 57.402 40.909 0.00 0.00 45.46 3.41
51 52 3.689347 TGGAGTGTGAATCCTTTGGATG 58.311 45.455 0.00 0.00 42.27 3.51
52 53 3.330405 TGGAGTGTGAATCCTTTGGATGA 59.670 43.478 0.00 0.00 42.27 2.92
53 54 3.691609 GGAGTGTGAATCCTTTGGATGAC 59.308 47.826 0.00 1.78 42.27 3.06
54 55 3.338249 AGTGTGAATCCTTTGGATGACG 58.662 45.455 0.00 0.00 42.27 4.35
55 56 2.083774 TGTGAATCCTTTGGATGACGC 58.916 47.619 0.00 5.53 42.27 5.19
56 57 2.083774 GTGAATCCTTTGGATGACGCA 58.916 47.619 0.00 0.00 42.27 5.24
57 58 2.487762 GTGAATCCTTTGGATGACGCAA 59.512 45.455 0.00 0.00 42.27 4.85
58 59 3.057596 GTGAATCCTTTGGATGACGCAAA 60.058 43.478 0.00 0.00 42.27 3.68
59 60 3.057596 TGAATCCTTTGGATGACGCAAAC 60.058 43.478 0.00 0.00 42.27 2.93
60 61 1.243902 TCCTTTGGATGACGCAAACC 58.756 50.000 0.00 0.00 0.00 3.27
61 62 0.243636 CCTTTGGATGACGCAAACCC 59.756 55.000 0.00 0.00 0.00 4.11
62 63 1.247567 CTTTGGATGACGCAAACCCT 58.752 50.000 0.00 0.00 0.00 4.34
63 64 0.958091 TTTGGATGACGCAAACCCTG 59.042 50.000 0.00 0.00 0.00 4.45
64 65 0.179004 TTGGATGACGCAAACCCTGT 60.179 50.000 0.00 0.00 0.00 4.00
65 66 0.605319 TGGATGACGCAAACCCTGTC 60.605 55.000 0.00 0.00 0.00 3.51
66 67 1.635663 GGATGACGCAAACCCTGTCG 61.636 60.000 0.00 0.00 35.40 4.35
67 68 1.635663 GATGACGCAAACCCTGTCGG 61.636 60.000 0.00 0.00 35.40 4.79
77 78 4.025401 CCTGTCGGTGCCGCAAAC 62.025 66.667 5.64 0.00 39.59 2.93
78 79 2.972505 CTGTCGGTGCCGCAAACT 60.973 61.111 5.64 0.00 39.59 2.66
79 80 2.515057 TGTCGGTGCCGCAAACTT 60.515 55.556 5.64 0.00 39.59 2.66
80 81 2.058829 CTGTCGGTGCCGCAAACTTT 62.059 55.000 5.64 0.00 39.59 2.66
81 82 0.814410 TGTCGGTGCCGCAAACTTTA 60.814 50.000 5.64 0.00 39.59 1.85
82 83 0.110373 GTCGGTGCCGCAAACTTTAG 60.110 55.000 5.64 0.00 39.59 1.85
83 84 0.533308 TCGGTGCCGCAAACTTTAGT 60.533 50.000 5.64 0.00 39.59 2.24
84 85 0.385473 CGGTGCCGCAAACTTTAGTG 60.385 55.000 0.00 0.00 0.00 2.74
85 86 0.039527 GGTGCCGCAAACTTTAGTGG 60.040 55.000 0.00 0.00 38.43 4.00
86 87 0.039527 GTGCCGCAAACTTTAGTGGG 60.040 55.000 0.00 0.00 35.95 4.61
817 821 6.951198 ACCCTACATGTTTGTTCATGGATTAA 59.049 34.615 2.30 0.00 46.39 1.40
1300 1358 0.681175 AATGAAGTGGTTGCAAGGCC 59.319 50.000 0.00 0.00 0.00 5.19
1496 1554 7.219726 GCTTTGCAAGTTAGAAATTCTGCTATC 59.780 37.037 5.64 1.20 0.00 2.08
1569 1628 4.499865 CGAATCATCTACACGGACTCCATT 60.500 45.833 0.00 0.00 0.00 3.16
1646 1709 8.992835 TTCTGCTGTGTCTATATGCTTATATG 57.007 34.615 0.17 0.00 0.00 1.78
1672 1838 7.115236 GTCGTATGTGTGTATGTTGTTCACTTA 59.885 37.037 0.00 0.00 33.82 2.24
1802 1970 1.559219 TCTTATGGCTTAGGTGCTGCA 59.441 47.619 0.00 0.00 0.00 4.41
1951 2121 5.525378 CCTTTGCTATTGTATGAGTCACCTC 59.475 44.000 0.00 0.00 38.27 3.85
1998 2168 1.618837 GTATCTATTGCTCTGGCGGGA 59.381 52.381 0.00 0.00 42.25 5.14
2022 2192 4.019860 ACCATGAGACTAAGAATGTGCAGT 60.020 41.667 0.00 0.00 0.00 4.40
2054 2224 5.775686 TGATTCTGTTCAAAATGGCTGAAG 58.224 37.500 0.00 0.00 33.56 3.02
2092 2264 2.460757 AACCAAATCATGTGCAAGGC 57.539 45.000 0.00 0.00 0.00 4.35
2093 2265 1.340088 ACCAAATCATGTGCAAGGCA 58.660 45.000 0.00 0.00 35.60 4.75
2094 2266 1.903860 ACCAAATCATGTGCAAGGCAT 59.096 42.857 0.00 0.00 41.91 4.40
2095 2267 2.093869 ACCAAATCATGTGCAAGGCATC 60.094 45.455 0.00 0.00 41.91 3.91
2096 2268 2.546778 CAAATCATGTGCAAGGCATCC 58.453 47.619 0.00 0.00 41.91 3.51
2097 2269 1.855295 AATCATGTGCAAGGCATCCA 58.145 45.000 0.00 0.00 41.91 3.41
2145 2321 9.605275 TCAATCAGTATAGGAAAACAATCTCAG 57.395 33.333 0.00 0.00 0.00 3.35
2183 2359 4.774124 TCTATTCAGACAATGCTCCCAAG 58.226 43.478 0.00 0.00 0.00 3.61
2200 2376 5.701224 TCCCAAGTGAAAAGGTAGTTGAAT 58.299 37.500 0.00 0.00 30.60 2.57
2204 2380 7.393234 CCCAAGTGAAAAGGTAGTTGAATCATA 59.607 37.037 0.00 0.00 30.60 2.15
2237 2420 0.961019 GCACCTGGCATCAAGAAACA 59.039 50.000 0.00 0.00 43.97 2.83
2238 2421 1.068055 GCACCTGGCATCAAGAAACAG 60.068 52.381 0.00 0.00 43.97 3.16
2239 2422 2.507484 CACCTGGCATCAAGAAACAGA 58.493 47.619 0.00 0.00 0.00 3.41
2240 2423 3.087031 CACCTGGCATCAAGAAACAGAT 58.913 45.455 0.00 0.00 0.00 2.90
2241 2424 3.508793 CACCTGGCATCAAGAAACAGATT 59.491 43.478 0.00 0.00 0.00 2.40
2242 2425 4.021719 CACCTGGCATCAAGAAACAGATTT 60.022 41.667 0.00 0.00 0.00 2.17
2243 2426 5.183713 CACCTGGCATCAAGAAACAGATTTA 59.816 40.000 0.00 0.00 0.00 1.40
2250 2433 8.037166 GGCATCAAGAAACAGATTTAAGGAATT 58.963 33.333 0.00 0.00 0.00 2.17
2251 2434 8.866956 GCATCAAGAAACAGATTTAAGGAATTG 58.133 33.333 0.00 0.00 0.00 2.32
2255 2438 9.971922 CAAGAAACAGATTTAAGGAATTGAAGT 57.028 29.630 0.00 0.00 0.00 3.01
2269 2452 8.697507 AGGAATTGAAGTGATTGATATAACCC 57.302 34.615 0.00 0.00 0.00 4.11
2270 2453 7.725844 AGGAATTGAAGTGATTGATATAACCCC 59.274 37.037 0.00 0.00 0.00 4.95
2271 2454 7.505585 GGAATTGAAGTGATTGATATAACCCCA 59.494 37.037 0.00 0.00 0.00 4.96
2272 2455 8.469309 AATTGAAGTGATTGATATAACCCCAG 57.531 34.615 0.00 0.00 0.00 4.45
2273 2456 6.575244 TGAAGTGATTGATATAACCCCAGT 57.425 37.500 0.00 0.00 0.00 4.00
2274 2457 6.356556 TGAAGTGATTGATATAACCCCAGTG 58.643 40.000 0.00 0.00 0.00 3.66
2275 2458 4.718961 AGTGATTGATATAACCCCAGTGC 58.281 43.478 0.00 0.00 0.00 4.40
2276 2459 4.165950 AGTGATTGATATAACCCCAGTGCA 59.834 41.667 0.00 0.00 0.00 4.57
2277 2460 5.072741 GTGATTGATATAACCCCAGTGCAT 58.927 41.667 0.00 0.00 0.00 3.96
2278 2461 5.048504 GTGATTGATATAACCCCAGTGCATG 60.049 44.000 0.00 0.00 0.00 4.06
2279 2462 4.518278 TTGATATAACCCCAGTGCATGT 57.482 40.909 0.00 0.00 0.00 3.21
2280 2463 5.638530 TTGATATAACCCCAGTGCATGTA 57.361 39.130 0.00 0.00 0.00 2.29
2281 2464 5.227569 TGATATAACCCCAGTGCATGTAG 57.772 43.478 0.00 0.00 0.00 2.74
2282 2465 2.348411 ATAACCCCAGTGCATGTAGC 57.652 50.000 0.00 0.00 45.96 3.58
2283 2466 1.285280 TAACCCCAGTGCATGTAGCT 58.715 50.000 0.00 0.00 45.94 3.32
2284 2467 0.035056 AACCCCAGTGCATGTAGCTC 60.035 55.000 0.00 0.00 45.94 4.09
2285 2468 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2286 2469 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2287 2470 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2288 2471 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2290 2473 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2291 2474 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2292 2475 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2293 2476 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2296 2479 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2308 2491 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2309 2492 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2310 2493 2.610859 GCAGGGTCTGGGGAAGGA 60.611 66.667 0.00 0.00 31.21 3.36
2311 2494 2.003548 GCAGGGTCTGGGGAAGGAT 61.004 63.158 0.00 0.00 31.21 3.24
2312 2495 1.988982 GCAGGGTCTGGGGAAGGATC 61.989 65.000 0.00 0.00 31.21 3.36
2313 2496 0.327000 CAGGGTCTGGGGAAGGATCT 60.327 60.000 0.00 0.00 0.00 2.75
2314 2497 0.327000 AGGGTCTGGGGAAGGATCTG 60.327 60.000 0.00 0.00 0.00 2.90
2315 2498 0.326618 GGGTCTGGGGAAGGATCTGA 60.327 60.000 0.00 0.00 0.00 3.27
2316 2499 0.833949 GGTCTGGGGAAGGATCTGAC 59.166 60.000 0.00 0.00 0.00 3.51
2317 2500 0.833949 GTCTGGGGAAGGATCTGACC 59.166 60.000 0.00 0.00 0.00 4.02
2318 2501 0.417437 TCTGGGGAAGGATCTGACCA 59.583 55.000 0.00 0.00 0.00 4.02
2319 2502 0.543749 CTGGGGAAGGATCTGACCAC 59.456 60.000 0.00 0.00 0.00 4.16
2320 2503 0.119155 TGGGGAAGGATCTGACCACT 59.881 55.000 0.00 0.00 0.00 4.00
2321 2504 1.290134 GGGGAAGGATCTGACCACTT 58.710 55.000 0.00 0.00 0.00 3.16
2322 2505 1.636003 GGGGAAGGATCTGACCACTTT 59.364 52.381 0.00 0.00 0.00 2.66
2323 2506 2.619074 GGGGAAGGATCTGACCACTTTG 60.619 54.545 0.00 0.00 0.00 2.77
2324 2507 2.619074 GGGAAGGATCTGACCACTTTGG 60.619 54.545 0.00 0.00 45.02 3.28
2325 2508 2.619074 GGAAGGATCTGACCACTTTGGG 60.619 54.545 0.00 0.00 43.37 4.12
2326 2509 1.747444 AGGATCTGACCACTTTGGGT 58.253 50.000 0.00 0.00 43.37 4.51
2336 2519 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2337 2520 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2338 2521 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2339 2522 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2340 2523 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2341 2524 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2342 2525 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2343 2526 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2344 2527 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2345 2528 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2346 2529 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2347 2530 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2348 2531 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2349 2532 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2350 2533 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2351 2534 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2352 2535 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2353 2536 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2354 2537 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2355 2538 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2356 2539 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2357 2540 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2358 2541 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
2359 2542 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
2360 2543 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
2361 2544 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
2362 2545 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
2372 2555 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
2373 2556 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
2374 2557 1.133823 TCTGCAAGAGGCTGTTTCCAA 60.134 47.619 0.00 0.00 38.67 3.53
2375 2558 1.268899 CTGCAAGAGGCTGTTTCCAAG 59.731 52.381 0.00 0.00 45.15 3.61
2376 2559 1.133823 TGCAAGAGGCTGTTTCCAAGA 60.134 47.619 0.00 0.00 45.15 3.02
2377 2560 1.268079 GCAAGAGGCTGTTTCCAAGAC 59.732 52.381 0.00 0.00 40.25 3.01
2378 2561 2.856222 CAAGAGGCTGTTTCCAAGACT 58.144 47.619 0.00 0.00 0.00 3.24
2379 2562 3.217626 CAAGAGGCTGTTTCCAAGACTT 58.782 45.455 0.00 0.00 0.00 3.01
2380 2563 2.856222 AGAGGCTGTTTCCAAGACTTG 58.144 47.619 8.31 8.31 0.00 3.16
2381 2564 2.439507 AGAGGCTGTTTCCAAGACTTGA 59.560 45.455 16.99 0.20 0.00 3.02
2382 2565 3.117888 AGAGGCTGTTTCCAAGACTTGAA 60.118 43.478 16.99 6.40 0.00 2.69
2383 2566 2.952310 AGGCTGTTTCCAAGACTTGAAC 59.048 45.455 16.99 13.58 0.00 3.18
2384 2567 2.034685 GGCTGTTTCCAAGACTTGAACC 59.965 50.000 16.99 2.96 0.00 3.62
2385 2568 2.034685 GCTGTTTCCAAGACTTGAACCC 59.965 50.000 16.99 4.73 0.00 4.11
2386 2569 2.290641 CTGTTTCCAAGACTTGAACCCG 59.709 50.000 16.99 4.73 0.00 5.28
2387 2570 2.294979 GTTTCCAAGACTTGAACCCGT 58.705 47.619 16.99 0.00 0.00 5.28
2388 2571 1.961793 TTCCAAGACTTGAACCCGTG 58.038 50.000 16.99 0.00 0.00 4.94
2389 2572 1.124780 TCCAAGACTTGAACCCGTGA 58.875 50.000 16.99 0.54 0.00 4.35
2390 2573 1.202604 TCCAAGACTTGAACCCGTGAC 60.203 52.381 16.99 0.00 0.00 3.67
2391 2574 1.226746 CAAGACTTGAACCCGTGACC 58.773 55.000 9.76 0.00 0.00 4.02
2392 2575 1.129058 AAGACTTGAACCCGTGACCT 58.871 50.000 0.00 0.00 0.00 3.85
2393 2576 0.680061 AGACTTGAACCCGTGACCTC 59.320 55.000 0.00 0.00 0.00 3.85
2394 2577 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2395 2578 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2396 2579 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.399580 CTTCCCCCGGAGAAGATAACT 58.600 52.381 22.81 0.00 42.80 2.24
1 2 1.202663 GCTTCCCCCGGAGAAGATAAC 60.203 57.143 28.35 13.23 42.80 1.89
4 5 0.914417 TTGCTTCCCCCGGAGAAGAT 60.914 55.000 28.35 0.00 42.80 2.40
5 6 1.131303 TTTGCTTCCCCCGGAGAAGA 61.131 55.000 28.35 15.70 42.80 2.87
6 7 0.034089 ATTTGCTTCCCCCGGAGAAG 60.034 55.000 22.87 22.87 42.99 2.85
7 8 0.323360 CATTTGCTTCCCCCGGAGAA 60.323 55.000 0.73 4.66 31.21 2.87
8 9 1.302949 CATTTGCTTCCCCCGGAGA 59.697 57.895 0.73 0.00 31.21 3.71
9 10 0.254747 TACATTTGCTTCCCCCGGAG 59.745 55.000 0.73 0.00 31.21 4.63
10 11 0.699399 TTACATTTGCTTCCCCCGGA 59.301 50.000 0.73 0.00 0.00 5.14
11 12 1.408702 CATTACATTTGCTTCCCCCGG 59.591 52.381 0.00 0.00 0.00 5.73
12 13 1.408702 CCATTACATTTGCTTCCCCCG 59.591 52.381 0.00 0.00 0.00 5.73
13 14 2.695147 CTCCATTACATTTGCTTCCCCC 59.305 50.000 0.00 0.00 0.00 5.40
14 15 3.131046 CACTCCATTACATTTGCTTCCCC 59.869 47.826 0.00 0.00 0.00 4.81
15 16 3.763897 ACACTCCATTACATTTGCTTCCC 59.236 43.478 0.00 0.00 0.00 3.97
16 17 4.458989 TCACACTCCATTACATTTGCTTCC 59.541 41.667 0.00 0.00 0.00 3.46
17 18 5.627499 TCACACTCCATTACATTTGCTTC 57.373 39.130 0.00 0.00 0.00 3.86
18 19 6.350445 GGATTCACACTCCATTACATTTGCTT 60.350 38.462 0.00 0.00 32.72 3.91
19 20 5.126061 GGATTCACACTCCATTACATTTGCT 59.874 40.000 0.00 0.00 32.72 3.91
20 21 5.126061 AGGATTCACACTCCATTACATTTGC 59.874 40.000 0.00 0.00 35.08 3.68
21 22 6.764308 AGGATTCACACTCCATTACATTTG 57.236 37.500 0.00 0.00 35.08 2.32
22 23 7.309990 CCAAAGGATTCACACTCCATTACATTT 60.310 37.037 0.00 0.00 35.08 2.32
23 24 6.153340 CCAAAGGATTCACACTCCATTACATT 59.847 38.462 0.00 0.00 35.08 2.71
24 25 5.653769 CCAAAGGATTCACACTCCATTACAT 59.346 40.000 0.00 0.00 35.08 2.29
25 26 5.009631 CCAAAGGATTCACACTCCATTACA 58.990 41.667 0.00 0.00 35.08 2.41
26 27 5.253330 TCCAAAGGATTCACACTCCATTAC 58.747 41.667 0.00 0.00 35.08 1.89
27 28 5.512942 TCCAAAGGATTCACACTCCATTA 57.487 39.130 0.00 0.00 35.08 1.90
28 29 4.387026 TCCAAAGGATTCACACTCCATT 57.613 40.909 0.00 0.00 35.08 3.16
29 30 4.018141 TCATCCAAAGGATTCACACTCCAT 60.018 41.667 0.00 0.00 39.79 3.41
30 31 3.330405 TCATCCAAAGGATTCACACTCCA 59.670 43.478 0.00 0.00 39.79 3.86
31 32 3.691609 GTCATCCAAAGGATTCACACTCC 59.308 47.826 0.00 0.00 39.79 3.85
32 33 3.372206 CGTCATCCAAAGGATTCACACTC 59.628 47.826 0.00 0.00 39.79 3.51
33 34 3.338249 CGTCATCCAAAGGATTCACACT 58.662 45.455 0.00 0.00 39.79 3.55
34 35 2.159517 GCGTCATCCAAAGGATTCACAC 60.160 50.000 0.00 0.00 39.79 3.82
35 36 2.083774 GCGTCATCCAAAGGATTCACA 58.916 47.619 0.00 0.00 39.79 3.58
36 37 2.083774 TGCGTCATCCAAAGGATTCAC 58.916 47.619 0.00 0.00 39.79 3.18
37 38 2.488204 TGCGTCATCCAAAGGATTCA 57.512 45.000 0.00 0.00 39.79 2.57
38 39 3.501950 GTTTGCGTCATCCAAAGGATTC 58.498 45.455 0.00 0.00 39.79 2.52
39 40 2.231235 GGTTTGCGTCATCCAAAGGATT 59.769 45.455 0.00 0.00 39.79 3.01
40 41 1.818674 GGTTTGCGTCATCCAAAGGAT 59.181 47.619 0.00 0.00 44.21 3.24
41 42 1.243902 GGTTTGCGTCATCCAAAGGA 58.756 50.000 0.00 0.00 33.28 3.36
42 43 0.243636 GGGTTTGCGTCATCCAAAGG 59.756 55.000 0.00 0.00 33.28 3.11
43 44 1.068333 CAGGGTTTGCGTCATCCAAAG 60.068 52.381 0.00 0.00 33.28 2.77
44 45 0.958091 CAGGGTTTGCGTCATCCAAA 59.042 50.000 0.00 0.00 0.00 3.28
45 46 0.179004 ACAGGGTTTGCGTCATCCAA 60.179 50.000 0.00 0.00 0.00 3.53
46 47 0.605319 GACAGGGTTTGCGTCATCCA 60.605 55.000 0.00 0.00 0.00 3.41
47 48 1.635663 CGACAGGGTTTGCGTCATCC 61.636 60.000 0.00 0.00 0.00 3.51
48 49 1.635663 CCGACAGGGTTTGCGTCATC 61.636 60.000 0.00 0.00 0.00 2.92
49 50 1.671054 CCGACAGGGTTTGCGTCAT 60.671 57.895 0.00 0.00 0.00 3.06
50 51 2.280524 CCGACAGGGTTTGCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
60 61 4.025401 GTTTGCGGCACCGACAGG 62.025 66.667 14.43 0.00 42.83 4.00
61 62 2.058829 AAAGTTTGCGGCACCGACAG 62.059 55.000 14.43 0.00 42.83 3.51
62 63 0.814410 TAAAGTTTGCGGCACCGACA 60.814 50.000 14.43 7.68 42.83 4.35
63 64 0.110373 CTAAAGTTTGCGGCACCGAC 60.110 55.000 14.43 1.96 42.83 4.79
64 65 0.533308 ACTAAAGTTTGCGGCACCGA 60.533 50.000 14.43 0.00 42.83 4.69
65 66 0.385473 CACTAAAGTTTGCGGCACCG 60.385 55.000 0.05 4.30 43.09 4.94
66 67 0.039527 CCACTAAAGTTTGCGGCACC 60.040 55.000 0.05 0.00 0.00 5.01
67 68 0.039527 CCCACTAAAGTTTGCGGCAC 60.040 55.000 0.05 0.00 0.00 5.01
68 69 1.175983 CCCCACTAAAGTTTGCGGCA 61.176 55.000 0.00 0.00 0.00 5.69
69 70 0.891904 TCCCCACTAAAGTTTGCGGC 60.892 55.000 0.00 0.00 0.00 6.53
70 71 1.834188 ATCCCCACTAAAGTTTGCGG 58.166 50.000 0.00 0.00 0.00 5.69
71 72 5.576447 AATAATCCCCACTAAAGTTTGCG 57.424 39.130 0.00 0.00 0.00 4.85
72 73 7.640597 AGTAATAATCCCCACTAAAGTTTGC 57.359 36.000 0.00 0.00 0.00 3.68
458 459 2.325583 TACCTGGAATCCATCAACGC 57.674 50.000 0.87 0.00 30.82 4.84
817 821 0.532573 CTCCATACTGTCACACCGCT 59.467 55.000 0.00 0.00 0.00 5.52
1300 1358 1.354040 GTCTGCGTCCATCACTTCTG 58.646 55.000 0.00 0.00 0.00 3.02
1496 1554 5.269189 TCTTCCCCCTAAAATTTGCTAAGG 58.731 41.667 0.00 0.00 0.00 2.69
1595 1654 1.374631 CTGCTGCAGTTCTGCGGTA 60.375 57.895 27.16 23.48 42.80 4.02
1646 1709 5.404366 AGTGAACAACATACACACATACGAC 59.596 40.000 0.00 0.00 37.05 4.34
1672 1838 4.905429 TCCAGCACATGTACTACACAATT 58.095 39.130 0.00 0.00 41.55 2.32
1720 1886 4.689062 AGAGAGAAATGTAACCAGGGAGA 58.311 43.478 0.00 0.00 0.00 3.71
1864 2034 5.745312 TGTAGACATGGATCTTGTGAACT 57.255 39.130 6.58 1.94 0.00 3.01
1951 2121 8.128582 ACTTTCATGGTTGTACAATATAATGCG 58.871 33.333 12.26 7.78 0.00 4.73
1998 2168 4.910195 TGCACATTCTTAGTCTCATGGTT 58.090 39.130 0.00 0.00 0.00 3.67
2006 2176 3.187227 CACACCACTGCACATTCTTAGTC 59.813 47.826 0.00 0.00 0.00 2.59
2022 2192 2.929641 TGAACAGAATCAAGCACACCA 58.070 42.857 0.00 0.00 0.00 4.17
2092 2264 6.906157 AATGCTATACCCTTTCAATGGATG 57.094 37.500 0.00 0.00 0.00 3.51
2093 2265 7.068702 TCAAATGCTATACCCTTTCAATGGAT 58.931 34.615 0.00 0.00 0.00 3.41
2094 2266 6.430864 TCAAATGCTATACCCTTTCAATGGA 58.569 36.000 0.00 0.00 0.00 3.41
2095 2267 6.713762 TCAAATGCTATACCCTTTCAATGG 57.286 37.500 0.00 0.00 0.00 3.16
2096 2268 7.944061 TGATCAAATGCTATACCCTTTCAATG 58.056 34.615 0.00 0.00 0.00 2.82
2097 2269 8.537728 TTGATCAAATGCTATACCCTTTCAAT 57.462 30.769 5.45 0.00 0.00 2.57
2145 2321 9.213799 GTCTGAATAGATTTCCCTATGAATGTC 57.786 37.037 0.00 0.00 34.94 3.06
2183 2359 8.784043 ACAAGTATGATTCAACTACCTTTTCAC 58.216 33.333 0.00 0.00 0.00 3.18
2200 2376 4.065088 GGTGCAACAGAAGACAAGTATGA 58.935 43.478 0.00 0.00 39.98 2.15
2204 2380 2.292267 CAGGTGCAACAGAAGACAAGT 58.708 47.619 3.64 0.00 39.98 3.16
2243 2426 9.136323 GGGTTATATCAATCACTTCAATTCCTT 57.864 33.333 0.00 0.00 0.00 3.36
2250 2433 6.356556 CACTGGGGTTATATCAATCACTTCA 58.643 40.000 0.00 0.00 0.00 3.02
2251 2434 5.239525 GCACTGGGGTTATATCAATCACTTC 59.760 44.000 0.00 0.00 0.00 3.01
2254 2437 4.460263 TGCACTGGGGTTATATCAATCAC 58.540 43.478 0.00 0.00 0.00 3.06
2255 2438 4.787135 TGCACTGGGGTTATATCAATCA 57.213 40.909 0.00 0.00 0.00 2.57
2269 2452 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2270 2453 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2291 2474 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2292 2475 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2293 2476 1.988982 GATCCTTCCCCAGACCCTGC 61.989 65.000 0.00 0.00 0.00 4.85
2294 2477 0.327000 AGATCCTTCCCCAGACCCTG 60.327 60.000 0.00 0.00 0.00 4.45
2295 2478 0.327000 CAGATCCTTCCCCAGACCCT 60.327 60.000 0.00 0.00 0.00 4.34
2296 2479 0.326618 TCAGATCCTTCCCCAGACCC 60.327 60.000 0.00 0.00 0.00 4.46
2297 2480 0.833949 GTCAGATCCTTCCCCAGACC 59.166 60.000 0.00 0.00 0.00 3.85
2298 2481 0.833949 GGTCAGATCCTTCCCCAGAC 59.166 60.000 0.00 0.00 0.00 3.51
2299 2482 0.417437 TGGTCAGATCCTTCCCCAGA 59.583 55.000 0.00 0.00 0.00 3.86
2300 2483 0.543749 GTGGTCAGATCCTTCCCCAG 59.456 60.000 0.00 0.00 0.00 4.45
2301 2484 0.119155 AGTGGTCAGATCCTTCCCCA 59.881 55.000 0.00 0.00 0.00 4.96
2302 2485 1.290134 AAGTGGTCAGATCCTTCCCC 58.710 55.000 0.00 0.00 0.00 4.81
2303 2486 2.619074 CCAAAGTGGTCAGATCCTTCCC 60.619 54.545 0.00 0.00 31.35 3.97
2304 2487 2.619074 CCCAAAGTGGTCAGATCCTTCC 60.619 54.545 0.00 0.00 35.17 3.46
2305 2488 2.040412 ACCCAAAGTGGTCAGATCCTTC 59.960 50.000 0.00 0.00 35.17 3.46
2306 2489 2.065799 ACCCAAAGTGGTCAGATCCTT 58.934 47.619 0.00 0.00 35.17 3.36
2307 2490 1.747444 ACCCAAAGTGGTCAGATCCT 58.253 50.000 0.00 0.00 35.17 3.24
2315 2498 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2316 2499 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2317 2500 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2318 2501 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2319 2502 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2320 2503 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2321 2504 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2322 2505 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2323 2506 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2324 2507 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2325 2508 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2326 2509 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2327 2510 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2328 2511 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2329 2512 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2330 2513 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2331 2514 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2332 2515 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2333 2516 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2334 2517 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2335 2518 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2336 2519 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2337 2520 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
2338 2521 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
2339 2522 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
2340 2523 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2341 2524 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
2342 2525 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
2343 2526 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
2344 2527 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
2345 2528 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
2346 2529 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2347 2530 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
2348 2531 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
2349 2532 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
2350 2533 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
2351 2534 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
2352 2535 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
2353 2536 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
2354 2537 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
2355 2538 1.268899 CTTGGAAACAGCCTCTTGCAG 59.731 52.381 0.00 0.00 44.54 4.41
2356 2539 1.133823 TCTTGGAAACAGCCTCTTGCA 60.134 47.619 0.00 0.00 44.54 4.08
2357 2540 1.268079 GTCTTGGAAACAGCCTCTTGC 59.732 52.381 0.00 0.00 44.54 4.01
2358 2541 2.856222 AGTCTTGGAAACAGCCTCTTG 58.144 47.619 0.00 0.00 44.54 3.02
2359 2542 3.117888 TCAAGTCTTGGAAACAGCCTCTT 60.118 43.478 12.66 0.00 44.54 2.85
2360 2543 2.439507 TCAAGTCTTGGAAACAGCCTCT 59.560 45.455 12.66 0.00 44.54 3.69
2361 2544 2.851195 TCAAGTCTTGGAAACAGCCTC 58.149 47.619 12.66 0.00 44.54 4.70
2362 2545 2.952310 GTTCAAGTCTTGGAAACAGCCT 59.048 45.455 12.66 0.00 44.54 4.58
2363 2546 2.034685 GGTTCAAGTCTTGGAAACAGCC 59.965 50.000 12.66 0.98 44.54 4.85
2364 2547 2.034685 GGGTTCAAGTCTTGGAAACAGC 59.965 50.000 12.66 2.46 44.54 4.40
2365 2548 2.290641 CGGGTTCAAGTCTTGGAAACAG 59.709 50.000 12.66 5.83 44.54 3.16
2366 2549 2.294074 CGGGTTCAAGTCTTGGAAACA 58.706 47.619 12.66 0.00 32.36 2.83
2367 2550 2.032924 CACGGGTTCAAGTCTTGGAAAC 59.967 50.000 12.66 10.07 0.00 2.78
2368 2551 2.092861 TCACGGGTTCAAGTCTTGGAAA 60.093 45.455 12.66 0.00 0.00 3.13
2369 2552 1.487142 TCACGGGTTCAAGTCTTGGAA 59.513 47.619 12.66 3.49 0.00 3.53
2370 2553 1.124780 TCACGGGTTCAAGTCTTGGA 58.875 50.000 12.66 0.30 0.00 3.53
2371 2554 1.226746 GTCACGGGTTCAAGTCTTGG 58.773 55.000 12.66 0.00 0.00 3.61
2372 2555 1.202651 AGGTCACGGGTTCAAGTCTTG 60.203 52.381 6.21 6.21 0.00 3.02
2373 2556 1.070289 GAGGTCACGGGTTCAAGTCTT 59.930 52.381 0.00 0.00 0.00 3.01
2374 2557 0.680061 GAGGTCACGGGTTCAAGTCT 59.320 55.000 0.00 0.00 0.00 3.24
2375 2558 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2376 2559 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2377 2560 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2378 2561 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2379 2562 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2380 2563 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.