Multiple sequence alignment - TraesCS6A01G078800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G078800 chr6A 100.000 4554 0 0 1388 5941 48552832 48557385 0.000000e+00 8410.0
1 TraesCS6A01G078800 chr6A 100.000 1054 0 0 1 1054 48551445 48552498 0.000000e+00 1947.0
2 TraesCS6A01G078800 chr6A 84.335 466 63 8 2224 2683 262365093 262364632 1.170000e-121 448.0
3 TraesCS6A01G078800 chr6A 90.393 229 14 2 1918 2144 572390125 572390347 1.620000e-75 294.0
4 TraesCS6A01G078800 chr6A 89.083 229 17 4 1918 2144 262365332 262365110 1.630000e-70 278.0
5 TraesCS6A01G078800 chr6A 94.792 96 3 2 3244 3338 499011144 499011238 1.330000e-31 148.0
6 TraesCS6A01G078800 chr6A 100.000 45 0 0 2220 2264 48553620 48553664 3.820000e-12 84.2
7 TraesCS6A01G078800 chr6A 100.000 45 0 0 2176 2220 48553664 48553708 3.820000e-12 84.2
8 TraesCS6A01G078800 chr6A 88.679 53 6 0 2168 2220 262365105 262365053 1.380000e-06 65.8
9 TraesCS6A01G078800 chr6D 94.831 2631 94 21 3325 5941 36816830 36819432 0.000000e+00 4067.0
10 TraesCS6A01G078800 chr6D 94.951 1030 43 6 2220 3245 36815806 36816830 0.000000e+00 1605.0
11 TraesCS6A01G078800 chr6D 94.347 513 25 3 543 1054 36814498 36815007 0.000000e+00 784.0
12 TraesCS6A01G078800 chr6D 87.387 555 29 7 1670 2220 36815333 36815850 3.060000e-167 599.0
13 TraesCS6A01G078800 chr6D 84.685 555 66 15 1 545 36812160 36812705 2.440000e-148 536.0
14 TraesCS6A01G078800 chr6D 90.541 222 13 2 1925 2144 28344221 28344006 2.710000e-73 287.0
15 TraesCS6A01G078800 chr6D 83.721 129 20 1 215 342 454064141 454064269 2.910000e-23 121.0
16 TraesCS6A01G078800 chr6B 94.255 1967 82 14 3308 5251 85784625 85786583 0.000000e+00 2977.0
17 TraesCS6A01G078800 chr6B 95.150 1031 39 7 2220 3247 85783519 85784541 0.000000e+00 1616.0
18 TraesCS6A01G078800 chr6B 87.182 983 91 19 84 1054 85781765 85782724 0.000000e+00 1085.0
19 TraesCS6A01G078800 chr6B 91.119 563 36 10 1667 2220 85783006 85783563 0.000000e+00 750.0
20 TraesCS6A01G078800 chr6B 94.433 485 22 2 5462 5941 85787338 85787822 0.000000e+00 741.0
21 TraesCS6A01G078800 chr6B 95.652 69 3 0 1597 1665 166127579 166127647 1.750000e-20 111.0
22 TraesCS6A01G078800 chr6B 92.424 66 5 0 1600 1665 195461860 195461925 1.760000e-15 95.3
23 TraesCS6A01G078800 chr6B 84.158 101 4 3 5370 5470 85786976 85787064 2.950000e-13 87.9
24 TraesCS6A01G078800 chr6B 93.750 48 3 0 1595 1642 247033388 247033435 8.260000e-09 73.1
25 TraesCS6A01G078800 chr7B 85.867 467 57 9 2224 2683 404672161 404672625 6.920000e-134 488.0
26 TraesCS6A01G078800 chr7B 87.571 177 13 4 1970 2144 404671975 404672144 4.700000e-46 196.0
27 TraesCS6A01G078800 chr4D 90.393 229 14 5 1918 2144 505743154 505742932 1.620000e-75 294.0
28 TraesCS6A01G078800 chr7D 89.956 229 15 2 1918 2144 161768479 161768701 7.530000e-74 289.0
29 TraesCS6A01G078800 chr7D 93.069 101 4 3 3237 3334 361747127 361747027 1.730000e-30 145.0
30 TraesCS6A01G078800 chr7D 89.908 109 9 2 3221 3329 509611630 509611736 8.030000e-29 139.0
31 TraesCS6A01G078800 chr7D 97.297 37 0 1 1634 1669 505138988 505138952 1.790000e-05 62.1
32 TraesCS6A01G078800 chr3D 89.177 231 15 5 1918 2144 540180839 540181063 4.530000e-71 279.0
33 TraesCS6A01G078800 chr3D 93.000 100 6 1 3234 3332 219572171 219572270 1.730000e-30 145.0
34 TraesCS6A01G078800 chr3D 84.091 132 20 1 215 345 300618713 300618582 6.250000e-25 126.0
35 TraesCS6A01G078800 chr3D 92.424 66 5 0 1600 1665 474998258 474998193 1.760000e-15 95.3
36 TraesCS6A01G078800 chr3D 90.769 65 4 2 1601 1665 471101181 471101243 1.060000e-12 86.1
37 TraesCS6A01G078800 chr2D 89.177 231 15 4 1918 2144 644884980 644885204 4.530000e-71 279.0
38 TraesCS6A01G078800 chr2D 92.381 105 5 3 3226 3329 565156936 565156834 4.800000e-31 147.0
39 TraesCS6A01G078800 chr2D 92.308 65 5 0 1601 1665 331615776 331615840 6.340000e-15 93.5
40 TraesCS6A01G078800 chr4B 88.372 172 19 1 2234 2404 523827220 523827391 7.800000e-49 206.0
41 TraesCS6A01G078800 chr4B 100.000 31 0 0 2190 2220 523827220 523827250 2.310000e-04 58.4
42 TraesCS6A01G078800 chr7A 94.949 99 3 1 3232 3328 78824041 78824139 2.870000e-33 154.0
43 TraesCS6A01G078800 chr7A 93.000 100 6 1 3237 3335 409259619 409259520 1.730000e-30 145.0
44 TraesCS6A01G078800 chr7A 90.164 61 3 3 1611 1669 572872143 572872084 6.380000e-10 76.8
45 TraesCS6A01G078800 chr1B 96.703 91 3 0 3241 3331 436383663 436383753 1.030000e-32 152.0
46 TraesCS6A01G078800 chr5A 91.429 105 7 2 3239 3341 280154703 280154599 6.210000e-30 143.0
47 TraesCS6A01G078800 chr3A 85.185 135 19 1 214 347 644817527 644817393 2.890000e-28 137.0
48 TraesCS6A01G078800 chr3A 83.846 130 20 1 214 342 163893465 163893594 8.090000e-24 122.0
49 TraesCS6A01G078800 chr3A 81.884 138 21 2 212 347 7797302 7797167 4.870000e-21 113.0
50 TraesCS6A01G078800 chr4A 82.576 132 22 1 215 345 137523222 137523091 1.350000e-21 115.0
51 TraesCS6A01G078800 chr2B 82.707 133 20 3 215 345 794331359 794331228 1.350000e-21 115.0
52 TraesCS6A01G078800 chr2B 88.333 60 7 0 1606 1665 190237406 190237465 8.260000e-09 73.1
53 TraesCS6A01G078800 chr1A 90.769 65 6 0 1601 1665 352871001 352871065 2.950000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G078800 chr6A 48551445 48557385 5940 False 2631.350000 8410 100.000000 1 5941 4 chr6A.!!$F3 5940
1 TraesCS6A01G078800 chr6A 262364632 262365332 700 True 263.933333 448 87.365667 1918 2683 3 chr6A.!!$R1 765
2 TraesCS6A01G078800 chr6D 36812160 36819432 7272 False 1518.200000 4067 91.240200 1 5941 5 chr6D.!!$F2 5940
3 TraesCS6A01G078800 chr6B 85781765 85787822 6057 False 1209.483333 2977 91.049500 84 5941 6 chr6B.!!$F4 5857
4 TraesCS6A01G078800 chr7B 404671975 404672625 650 False 342.000000 488 86.719000 1970 2683 2 chr7B.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 340 0.248866 CGACCACAAACACCAAAGCC 60.249 55.0 0.0 0.0 0.0 4.35 F
1602 3470 0.107993 TCTGCTCTGCTGCCATGTAC 60.108 55.0 0.0 0.0 0.0 2.90 F
3262 5259 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 4097 0.035056 ACCATGCCAGTACCTCTTGC 60.035 55.0 0.0 0.0 35.67 4.01 R
3511 5509 0.392193 GGCCAGTGAGTGACCATCAG 60.392 60.0 0.0 0.0 0.00 2.90 R
5130 7152 0.255890 CCAGGGGTGAGGTTATGTGG 59.744 60.0 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.967890 ATGAATGGATTGAAAGTTTTTCCAC 57.032 32.000 14.50 7.15 39.18 4.02
29 30 7.986085 TGGATTGAAAGTTTTTCCACAAAAA 57.014 28.000 10.27 0.00 38.84 1.94
101 102 7.597643 TTCGTTCAAAAATGTATTCACGAAC 57.402 32.000 0.00 0.00 39.69 3.95
108 109 9.574458 TCAAAAATGTATTCACGAACAGAAAAA 57.426 25.926 0.00 0.00 0.00 1.94
145 147 3.744987 AGATTCAGAAGTACGTCGTTCG 58.255 45.455 1.78 1.87 46.00 3.95
198 201 5.050499 TGGCGTGCATGAGTTTTAATTTTTG 60.050 36.000 10.93 0.00 0.00 2.44
257 264 9.736414 ATTCATCTATTCATCAACTATCAAGGG 57.264 33.333 0.00 0.00 0.00 3.95
258 265 7.164122 TCATCTATTCATCAACTATCAAGGGC 58.836 38.462 0.00 0.00 0.00 5.19
259 266 5.541845 TCTATTCATCAACTATCAAGGGCG 58.458 41.667 0.00 0.00 0.00 6.13
271 278 3.134574 TCAAGGGCGTACAAAGAACAT 57.865 42.857 0.00 0.00 0.00 2.71
274 281 3.134574 AGGGCGTACAAAGAACATCAA 57.865 42.857 0.00 0.00 0.00 2.57
333 340 0.248866 CGACCACAAACACCAAAGCC 60.249 55.000 0.00 0.00 0.00 4.35
345 352 1.961277 CAAAGCCAGCCGAAGACGT 60.961 57.895 0.00 0.00 37.88 4.34
356 363 3.194116 AGCCGAAGACGTGAAAATACCTA 59.806 43.478 0.00 0.00 37.88 3.08
396 404 7.832503 AAGGACACACAAATTCTTTTCTTTG 57.167 32.000 0.00 0.00 38.13 2.77
431 439 4.494199 CGGAGAGGTTTATTCGATGCAAAC 60.494 45.833 0.00 7.96 0.00 2.93
434 442 6.325919 AGAGGTTTATTCGATGCAAACAAA 57.674 33.333 14.93 0.00 34.55 2.83
435 443 6.149633 AGAGGTTTATTCGATGCAAACAAAC 58.850 36.000 14.93 0.00 34.55 2.93
439 451 6.843779 GGTTTATTCGATGCAAACAAACAAAC 59.156 34.615 14.93 3.82 34.55 2.93
440 452 7.394872 GTTTATTCGATGCAAACAAACAAACA 58.605 30.769 0.00 0.00 33.39 2.83
449 461 5.755375 TGCAAACAAACAAACAAACAAGAGA 59.245 32.000 0.00 0.00 0.00 3.10
492 504 7.713734 AAGAACAATCACAGATGAATTCCAT 57.286 32.000 2.27 0.00 38.69 3.41
556 2363 2.030363 CCAATGGTAAACATGCACGTGT 60.030 45.455 18.38 0.00 40.44 4.49
634 2442 9.484326 CTTACCCAAAAACTTTGAAAATTTTCG 57.516 29.630 22.51 12.94 40.01 3.46
701 2512 3.704061 TCCAAACAGGTCCAAAAAGAAGG 59.296 43.478 0.00 0.00 39.02 3.46
720 2531 1.931841 GGATAAAAGAACGGCGAGACC 59.068 52.381 16.62 0.00 0.00 3.85
881 2692 3.518998 CGGAGATCGGACGGCTGT 61.519 66.667 0.00 0.00 34.75 4.40
1510 3345 2.676471 CCTCGCCTGGGGTTTTGG 60.676 66.667 10.81 5.71 0.00 3.28
1524 3359 3.575630 GGTTTTGGGCGAATTCTTCTTC 58.424 45.455 3.52 0.00 0.00 2.87
1543 3378 1.614241 CGGTAGACCACAGAAGGGGG 61.614 65.000 0.00 0.00 35.14 5.40
1558 3423 5.362717 CAGAAGGGGGTTAATTTCCCATTAC 59.637 44.000 16.72 8.97 45.88 1.89
1592 3460 0.524862 CCATGTTGGTTCTGCTCTGC 59.475 55.000 0.00 0.00 31.35 4.26
1600 3468 0.959372 GTTCTGCTCTGCTGCCATGT 60.959 55.000 0.00 0.00 0.00 3.21
1601 3469 0.614812 TTCTGCTCTGCTGCCATGTA 59.385 50.000 0.00 0.00 0.00 2.29
1602 3470 0.107993 TCTGCTCTGCTGCCATGTAC 60.108 55.000 0.00 0.00 0.00 2.90
1603 3471 1.078214 TGCTCTGCTGCCATGTACC 60.078 57.895 0.00 0.00 0.00 3.34
1604 3472 1.821332 GCTCTGCTGCCATGTACCC 60.821 63.158 0.00 0.00 0.00 3.69
1605 3473 1.153086 CTCTGCTGCCATGTACCCC 60.153 63.158 0.00 0.00 0.00 4.95
1606 3474 2.124151 CTGCTGCCATGTACCCCC 60.124 66.667 0.00 0.00 0.00 5.40
1607 3475 2.613696 TGCTGCCATGTACCCCCT 60.614 61.111 0.00 0.00 0.00 4.79
1608 3476 2.215451 CTGCTGCCATGTACCCCCTT 62.215 60.000 0.00 0.00 0.00 3.95
1609 3477 1.453928 GCTGCCATGTACCCCCTTC 60.454 63.158 0.00 0.00 0.00 3.46
1610 3478 1.153168 CTGCCATGTACCCCCTTCG 60.153 63.158 0.00 0.00 0.00 3.79
1611 3479 1.910580 CTGCCATGTACCCCCTTCGT 61.911 60.000 0.00 0.00 0.00 3.85
1612 3480 1.153229 GCCATGTACCCCCTTCGTC 60.153 63.158 0.00 0.00 0.00 4.20
1613 3481 1.525442 CCATGTACCCCCTTCGTCC 59.475 63.158 0.00 0.00 0.00 4.79
1614 3482 1.525442 CATGTACCCCCTTCGTCCC 59.475 63.158 0.00 0.00 0.00 4.46
1615 3483 1.081462 ATGTACCCCCTTCGTCCCA 59.919 57.895 0.00 0.00 0.00 4.37
1616 3484 0.548197 ATGTACCCCCTTCGTCCCAA 60.548 55.000 0.00 0.00 0.00 4.12
1617 3485 0.767446 TGTACCCCCTTCGTCCCAAA 60.767 55.000 0.00 0.00 0.00 3.28
1618 3486 0.401356 GTACCCCCTTCGTCCCAAAA 59.599 55.000 0.00 0.00 0.00 2.44
1619 3487 1.005097 GTACCCCCTTCGTCCCAAAAT 59.995 52.381 0.00 0.00 0.00 1.82
1620 3488 1.374572 ACCCCCTTCGTCCCAAAATA 58.625 50.000 0.00 0.00 0.00 1.40
1621 3489 1.711942 ACCCCCTTCGTCCCAAAATAA 59.288 47.619 0.00 0.00 0.00 1.40
1622 3490 2.291346 ACCCCCTTCGTCCCAAAATAAG 60.291 50.000 0.00 0.00 0.00 1.73
1623 3491 2.291346 CCCCCTTCGTCCCAAAATAAGT 60.291 50.000 0.00 0.00 0.00 2.24
1624 3492 2.752903 CCCCTTCGTCCCAAAATAAGTG 59.247 50.000 0.00 0.00 0.00 3.16
1625 3493 3.418047 CCCTTCGTCCCAAAATAAGTGT 58.582 45.455 0.00 0.00 0.00 3.55
1626 3494 3.439129 CCCTTCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
1627 3495 4.324267 CCTTCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
1628 3496 4.760204 CCTTCGTCCCAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
1629 3497 5.334879 CCTTCGTCCCAAAATAAGTGTCTTG 60.335 44.000 0.00 0.00 0.00 3.02
1630 3498 4.963373 TCGTCCCAAAATAAGTGTCTTGA 58.037 39.130 0.00 0.00 0.00 3.02
1631 3499 4.753107 TCGTCCCAAAATAAGTGTCTTGAC 59.247 41.667 0.00 0.00 0.00 3.18
1632 3500 4.083484 CGTCCCAAAATAAGTGTCTTGACC 60.083 45.833 0.00 0.00 0.00 4.02
1633 3501 5.070685 GTCCCAAAATAAGTGTCTTGACCT 58.929 41.667 0.00 0.00 0.00 3.85
1634 3502 5.535030 GTCCCAAAATAAGTGTCTTGACCTT 59.465 40.000 0.00 4.52 0.00 3.50
1635 3503 6.713450 GTCCCAAAATAAGTGTCTTGACCTTA 59.287 38.462 11.29 11.29 0.00 2.69
1636 3504 6.940298 TCCCAAAATAAGTGTCTTGACCTTAG 59.060 38.462 13.13 0.00 0.00 2.18
1637 3505 6.715264 CCCAAAATAAGTGTCTTGACCTTAGT 59.285 38.462 13.13 9.86 0.00 2.24
1638 3506 7.881232 CCCAAAATAAGTGTCTTGACCTTAGTA 59.119 37.037 13.13 0.23 0.00 1.82
1639 3507 8.718734 CCAAAATAAGTGTCTTGACCTTAGTAC 58.281 37.037 13.13 0.00 0.00 2.73
1640 3508 9.268268 CAAAATAAGTGTCTTGACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
1641 3509 9.841295 AAAATAAGTGTCTTGACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
1642 3510 8.828688 AATAAGTGTCTTGACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
1643 3511 6.481434 AAGTGTCTTGACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
1644 3512 6.481434 AGTGTCTTGACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
1645 3513 7.592885 AGTGTCTTGACCTTAGTACAACTTA 57.407 36.000 0.00 0.00 0.00 2.24
1646 3514 8.191534 AGTGTCTTGACCTTAGTACAACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
1647 3515 8.648693 AGTGTCTTGACCTTAGTACAACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
1648 3516 9.269453 GTGTCTTGACCTTAGTACAACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
1649 3517 9.841295 TGTCTTGACCTTAGTACAACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
1651 3519 9.280174 TCTTGACCTTAGTACAACTTATTTTGG 57.720 33.333 0.00 0.00 0.00 3.28
1652 3520 7.989416 TGACCTTAGTACAACTTATTTTGGG 57.011 36.000 0.00 0.00 0.00 4.12
1653 3521 7.747690 TGACCTTAGTACAACTTATTTTGGGA 58.252 34.615 0.00 0.00 0.00 4.37
1654 3522 7.662669 TGACCTTAGTACAACTTATTTTGGGAC 59.337 37.037 0.00 0.00 0.00 4.46
1655 3523 6.652062 ACCTTAGTACAACTTATTTTGGGACG 59.348 38.462 0.00 0.00 0.00 4.79
1656 3524 6.093082 CCTTAGTACAACTTATTTTGGGACGG 59.907 42.308 0.00 0.00 0.00 4.79
1657 3525 5.231702 AGTACAACTTATTTTGGGACGGA 57.768 39.130 0.00 0.00 0.00 4.69
1658 3526 5.243207 AGTACAACTTATTTTGGGACGGAG 58.757 41.667 0.00 0.00 0.00 4.63
1659 3527 3.418047 ACAACTTATTTTGGGACGGAGG 58.582 45.455 0.00 0.00 0.00 4.30
1660 3528 2.752903 CAACTTATTTTGGGACGGAGGG 59.247 50.000 0.00 0.00 0.00 4.30
1661 3529 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
1662 3530 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1663 3531 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1664 3532 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1665 3533 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
1666 3534 1.961133 TTTGGGACGGAGGGAGTAAT 58.039 50.000 0.00 0.00 0.00 1.89
1667 3535 1.961133 TTGGGACGGAGGGAGTAATT 58.039 50.000 0.00 0.00 0.00 1.40
1668 3536 1.961133 TGGGACGGAGGGAGTAATTT 58.039 50.000 0.00 0.00 0.00 1.82
1691 3565 4.141597 TGGTTAGGATCATGAATTGCGGTA 60.142 41.667 0.00 0.00 0.00 4.02
1713 3587 3.643792 AGCGATTTCTTAGCAGGATAGGT 59.356 43.478 0.00 0.00 0.00 3.08
1739 3613 5.517054 GTCAATGGAACGAGTAGCTAGAAAG 59.483 44.000 0.00 0.00 0.00 2.62
1741 3615 2.165845 TGGAACGAGTAGCTAGAAAGGC 59.834 50.000 0.00 0.00 0.00 4.35
1742 3616 2.452105 GAACGAGTAGCTAGAAAGGCG 58.548 52.381 0.00 0.00 34.52 5.52
1744 3618 2.299521 ACGAGTAGCTAGAAAGGCGAT 58.700 47.619 0.00 0.00 34.52 4.58
1771 3646 6.317140 TCTGCTTATGTTTGCTTCATTCTAGG 59.683 38.462 0.00 0.00 0.00 3.02
2096 3979 8.935844 TGTGCAGATAACATTTAACTGAGTTAG 58.064 33.333 5.10 0.00 30.87 2.34
2133 4016 6.347859 AGTTTGGACTGGTAGAAAGTAGAG 57.652 41.667 0.00 0.00 33.99 2.43
2211 4094 5.639082 GGTAGGCTCAATTGTGAAATTTTGG 59.361 40.000 11.59 0.00 31.88 3.28
2212 4095 5.549742 AGGCTCAATTGTGAAATTTTGGA 57.450 34.783 11.59 0.00 31.88 3.53
2213 4096 6.117975 AGGCTCAATTGTGAAATTTTGGAT 57.882 33.333 11.59 0.00 31.88 3.41
2214 4097 5.935789 AGGCTCAATTGTGAAATTTTGGATG 59.064 36.000 11.59 0.00 31.88 3.51
2215 4098 5.391203 GGCTCAATTGTGAAATTTTGGATGC 60.391 40.000 11.59 0.00 31.88 3.91
2216 4099 5.179742 GCTCAATTGTGAAATTTTGGATGCA 59.820 36.000 11.59 0.00 31.88 3.96
2217 4100 6.293516 GCTCAATTGTGAAATTTTGGATGCAA 60.294 34.615 11.59 0.00 31.88 4.08
2218 4101 7.192148 TCAATTGTGAAATTTTGGATGCAAG 57.808 32.000 5.13 0.00 0.00 4.01
2219 4102 6.990939 TCAATTGTGAAATTTTGGATGCAAGA 59.009 30.769 5.13 0.00 0.00 3.02
2220 4103 7.171848 TCAATTGTGAAATTTTGGATGCAAGAG 59.828 33.333 5.13 0.00 0.00 2.85
2221 4104 4.885413 TGTGAAATTTTGGATGCAAGAGG 58.115 39.130 0.00 0.00 0.00 3.69
2222 4105 4.344679 TGTGAAATTTTGGATGCAAGAGGT 59.655 37.500 0.00 0.00 0.00 3.85
2223 4106 5.538053 TGTGAAATTTTGGATGCAAGAGGTA 59.462 36.000 0.00 0.00 0.00 3.08
2224 4107 5.863935 GTGAAATTTTGGATGCAAGAGGTAC 59.136 40.000 0.00 0.00 0.00 3.34
2226 4109 5.649782 AATTTTGGATGCAAGAGGTACTG 57.350 39.130 0.00 0.00 41.55 2.74
2227 4110 2.787473 TTGGATGCAAGAGGTACTGG 57.213 50.000 0.00 0.00 41.55 4.00
2250 4133 4.142093 GCATGGTAGGCTCAATTGTGAAAT 60.142 41.667 11.59 0.00 31.88 2.17
2303 4186 4.749598 CCCCTTTGTTCTTGTTGCATTAAC 59.250 41.667 0.00 0.00 39.80 2.01
2308 4191 7.167468 CCTTTGTTCTTGTTGCATTAACTACAC 59.833 37.037 0.00 0.00 40.05 2.90
2371 4255 6.861065 TTGTAGTTCAGGACAAGAATGTTC 57.139 37.500 0.00 0.00 40.74 3.18
2372 4256 5.305585 TGTAGTTCAGGACAAGAATGTTCC 58.694 41.667 0.00 0.00 40.74 3.62
2616 4504 1.135489 CATCACTTGGCATGTCACTGC 60.135 52.381 0.00 0.00 41.53 4.40
2661 4551 6.338146 TGCGCCATACTTGATAGGATATTAC 58.662 40.000 4.18 0.00 0.00 1.89
2769 4661 7.619302 TGGCCTATAAATTCCTTTCATTCAACT 59.381 33.333 3.32 0.00 0.00 3.16
2781 4673 6.712547 CCTTTCATTCAACTTCCTAACTCTGT 59.287 38.462 0.00 0.00 0.00 3.41
2876 4768 2.356382 CGTGTTTGCCTACTTTTGTGGA 59.644 45.455 0.00 0.00 32.14 4.02
2983 4875 8.285394 CACTAAATAATATAAGCACAGCACAGG 58.715 37.037 0.00 0.00 0.00 4.00
3029 4921 8.973378 CCTAAGAAGATCTCATTATTTGTCGTC 58.027 37.037 0.00 0.00 0.00 4.20
3035 4927 9.784531 AAGATCTCATTATTTGTCGTCCATATT 57.215 29.630 0.00 0.00 0.00 1.28
3145 5038 9.247861 ACCTAGCAATTTTGTTTCTAATCTGAT 57.752 29.630 0.00 0.00 0.00 2.90
3146 5039 9.512435 CCTAGCAATTTTGTTTCTAATCTGATG 57.488 33.333 0.00 0.00 0.00 3.07
3251 5248 9.886132 TTGTTCTTTATAAACATCTACTCCCTC 57.114 33.333 0.00 0.00 36.57 4.30
3252 5249 8.483758 TGTTCTTTATAAACATCTACTCCCTCC 58.516 37.037 0.00 0.00 31.90 4.30
3253 5250 7.286215 TCTTTATAAACATCTACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
3254 5251 6.837568 TCTTTATAAACATCTACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
3255 5252 6.645790 TTATAAACATCTACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
3256 5253 1.777941 AACATCTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3257 5254 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
3258 5255 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
3259 5256 0.106116 ATCTACTCCCTCCGTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
3260 5257 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3261 5258 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3262 5259 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3263 5260 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
3264 5261 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
3265 5262 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
3266 5263 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
3267 5264 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
3268 5265 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3269 5266 3.389983 CCCTCCGTCCCACAATATAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
3270 5267 4.377897 CCTCCGTCCCACAATATAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
3271 5268 4.049186 CTCCGTCCCACAATATAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
3272 5269 3.448301 TCCGTCCCACAATATAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
3273 5270 4.081531 TCCGTCCCACAATATAAGAACGTT 60.082 41.667 0.00 0.00 0.00 3.99
3274 5271 4.632688 CCGTCCCACAATATAAGAACGTTT 59.367 41.667 0.46 0.00 0.00 3.60
3275 5272 5.122711 CCGTCCCACAATATAAGAACGTTTT 59.877 40.000 0.46 0.00 0.00 2.43
3276 5273 6.348704 CCGTCCCACAATATAAGAACGTTTTT 60.349 38.462 9.22 9.22 0.00 1.94
3277 5274 7.148440 CCGTCCCACAATATAAGAACGTTTTTA 60.148 37.037 13.02 13.02 0.00 1.52
3278 5275 8.229137 CGTCCCACAATATAAGAACGTTTTTAA 58.771 33.333 14.41 5.85 0.00 1.52
3279 5276 9.333497 GTCCCACAATATAAGAACGTTTTTAAC 57.667 33.333 14.41 2.76 0.00 2.01
3280 5277 9.064706 TCCCACAATATAAGAACGTTTTTAACA 57.935 29.630 14.41 6.96 0.00 2.41
3281 5278 9.120422 CCCACAATATAAGAACGTTTTTAACAC 57.880 33.333 14.41 0.00 0.00 3.32
3282 5279 9.887406 CCACAATATAAGAACGTTTTTAACACT 57.113 29.630 14.41 2.21 0.00 3.55
3290 5287 8.707938 AAGAACGTTTTTAACACTACACTAGT 57.292 30.769 0.46 0.00 40.28 2.57
3303 5300 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
3304 5301 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
3305 5302 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
3306 5303 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
3307 5304 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
3308 5305 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
3309 5306 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
3314 5311 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
3315 5312 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
3316 5313 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
3317 5314 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
3318 5315 7.804129 TCAAAAACGTTCTTATATTTTGGGACG 59.196 33.333 15.53 0.00 39.94 4.79
3319 5316 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
3320 5317 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
3321 5318 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
3322 5319 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
3323 5320 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3324 5321 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
3337 5334 5.280934 GGGACGGAGGGAGTATATACTAAGT 60.281 48.000 15.42 9.10 36.50 2.24
3340 5337 7.552330 GGACGGAGGGAGTATATACTAAGTTAG 59.448 44.444 15.42 8.41 36.50 2.34
3341 5338 7.983363 ACGGAGGGAGTATATACTAAGTTAGT 58.017 38.462 19.15 19.15 42.68 2.24
3342 5339 8.443979 ACGGAGGGAGTATATACTAAGTTAGTT 58.556 37.037 20.28 10.89 40.14 2.24
3343 5340 9.950496 CGGAGGGAGTATATACTAAGTTAGTTA 57.050 37.037 20.28 12.49 40.14 2.24
3366 5363 5.344743 TGTAAGATGACTTCCATGAGACC 57.655 43.478 0.00 0.00 37.53 3.85
3511 5509 5.590259 ACCAGCATATAATTGAGACACCAAC 59.410 40.000 0.00 0.00 0.00 3.77
3584 5582 9.469807 CTTGTTGTATCTATACTCAAGGATGTC 57.530 37.037 19.06 0.00 39.33 3.06
3699 5697 7.195646 TGATCGATTATGCATTGTTTTTCCTC 58.804 34.615 3.54 0.00 0.00 3.71
3754 5752 3.887716 GCTTTGTCTGGATGGCTGATAAT 59.112 43.478 0.00 0.00 0.00 1.28
3805 5803 0.981183 TTAGCCGCTTTCAGGGAGAA 59.019 50.000 0.00 0.00 0.00 2.87
3822 5820 1.419387 AGAATGGCTACAGGATGCTCC 59.581 52.381 0.00 0.00 42.53 4.70
3988 5986 9.847224 TGGAAAACCTGGAATTATATCTAAGAC 57.153 33.333 0.00 0.00 0.00 3.01
4223 6230 3.340814 TGGAGATTGAGAAGCCAACTC 57.659 47.619 0.00 0.00 35.26 3.01
4469 6476 1.145819 GCTGAGAGGGATGAGGTGC 59.854 63.158 0.00 0.00 0.00 5.01
4543 6552 1.936547 GCTGACTTGGCTATTCTTCCG 59.063 52.381 0.00 0.00 0.00 4.30
4608 6617 5.363101 GCACTTTATGTCATGAGAGATCCA 58.637 41.667 0.00 0.00 0.00 3.41
4702 6713 4.327680 CTTCCTATATGCCCTTGCTTACC 58.672 47.826 0.00 0.00 38.71 2.85
4712 6723 1.340114 CCTTGCTTACCCTTGAGTCCC 60.340 57.143 0.00 0.00 0.00 4.46
4805 6824 4.081807 GTGTGAACTTTCCCCGTATCTACT 60.082 45.833 0.00 0.00 0.00 2.57
4820 6839 4.792521 ATCTACTATGCATCTCGTTCCC 57.207 45.455 0.19 0.00 0.00 3.97
4833 6852 1.819288 TCGTTCCCACAAAAACTTGCA 59.181 42.857 0.00 0.00 0.00 4.08
4934 6953 4.337274 TCGCGGTATACATATACATCAGGG 59.663 45.833 6.13 7.27 40.16 4.45
4942 6961 7.867305 ATACATATACATCAGGGTCGTAGAG 57.133 40.000 0.00 0.00 36.95 2.43
4967 6986 4.916424 AGGATTGGGATAGATTTACCTGCT 59.084 41.667 0.00 0.00 0.00 4.24
4968 6987 5.373854 AGGATTGGGATAGATTTACCTGCTT 59.626 40.000 0.00 0.00 0.00 3.91
4969 6988 5.707764 GGATTGGGATAGATTTACCTGCTTC 59.292 44.000 0.00 0.00 0.00 3.86
5029 7051 0.968405 TGCTGGTTCCTGGATTTTGC 59.032 50.000 0.00 1.34 0.00 3.68
5065 7087 2.341846 TTTGAGCGAAACCCTGTCTT 57.658 45.000 0.00 0.00 0.00 3.01
5122 7144 2.025155 TCTCGAGACCTTGGCTGATAC 58.975 52.381 12.08 0.00 0.00 2.24
5181 7203 9.284968 GCTGGGAATGTAATTATACAGTACATT 57.715 33.333 14.72 14.72 46.18 2.71
5218 7241 2.399611 GCACGCAGCAATACCGTC 59.600 61.111 0.00 0.00 44.79 4.79
5274 7297 6.445357 TGTTCCTTAAACTGTGAAGTTTCC 57.555 37.500 7.10 0.00 41.58 3.13
5280 7303 3.626028 AACTGTGAAGTTTCCGATTGC 57.374 42.857 0.00 0.00 0.00 3.56
5309 7332 6.313411 GTGATCTGGCATTTCTCTATCTATGC 59.687 42.308 0.00 0.00 41.94 3.14
5330 7353 9.729023 CTATGCTATGCTACTATATTGTCAGTC 57.271 37.037 0.00 0.00 0.00 3.51
5352 7375 9.525409 CAGTCTTTGATCATTGATTTTTATCCC 57.475 33.333 0.00 0.00 0.00 3.85
5353 7376 8.699130 AGTCTTTGATCATTGATTTTTATCCCC 58.301 33.333 0.00 0.00 0.00 4.81
5354 7377 8.699130 GTCTTTGATCATTGATTTTTATCCCCT 58.301 33.333 0.00 0.00 0.00 4.79
5355 7378 8.917088 TCTTTGATCATTGATTTTTATCCCCTC 58.083 33.333 0.00 0.00 0.00 4.30
5356 7379 8.843308 TTTGATCATTGATTTTTATCCCCTCT 57.157 30.769 0.00 0.00 0.00 3.69
5357 7380 9.934784 TTTGATCATTGATTTTTATCCCCTCTA 57.065 29.630 0.00 0.00 0.00 2.43
5358 7381 9.578576 TTGATCATTGATTTTTATCCCCTCTAG 57.421 33.333 0.00 0.00 0.00 2.43
5359 7382 8.948362 TGATCATTGATTTTTATCCCCTCTAGA 58.052 33.333 0.00 0.00 0.00 2.43
5360 7383 9.799106 GATCATTGATTTTTATCCCCTCTAGAA 57.201 33.333 0.00 0.00 0.00 2.10
5415 7712 2.358957 CCCTCGTTTGCTCATTGATCA 58.641 47.619 0.00 0.00 0.00 2.92
5416 7713 2.096496 CCCTCGTTTGCTCATTGATCAC 59.904 50.000 0.00 0.00 0.00 3.06
5470 8049 4.277672 GGTGATGCATCTTGATAATGTGCT 59.722 41.667 26.32 0.00 36.78 4.40
5495 8074 7.639039 TGTGTATCTCAACTTGATTTGTGTTC 58.361 34.615 0.00 0.00 0.00 3.18
5513 8092 4.516698 GTGTTCGGATTTAGCATGGATCAT 59.483 41.667 0.00 0.00 0.00 2.45
5548 8127 4.882427 AGATGTCCATGAAGCATTTCAGAG 59.118 41.667 0.00 0.00 45.89 3.35
5554 8133 4.413087 CATGAAGCATTTCAGAGTCAAGC 58.587 43.478 0.00 0.00 45.89 4.01
5729 8313 8.109705 TGTTAATGTACAACATGATCAAGCTT 57.890 30.769 0.00 0.00 37.97 3.74
5753 8337 4.330250 ACAAGCATGAGCAAGATAGTGTT 58.670 39.130 0.00 0.00 45.49 3.32
5881 8465 1.139058 GATAGGGACTGCAACCACGAT 59.861 52.381 10.99 0.00 41.52 3.73
5908 8492 1.346395 ACAGGCTTCCGTACAACATCA 59.654 47.619 0.00 0.00 0.00 3.07
5911 8495 1.593006 GGCTTCCGTACAACATCATCG 59.407 52.381 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 8.555166 TTCTGTTCGTGAATACATTTTTGAAC 57.445 30.769 0.00 0.00 36.06 3.18
82 83 9.574458 TTTTTCTGTTCGTGAATACATTTTTGA 57.426 25.926 0.00 0.00 0.00 2.69
122 123 5.499935 CGAACGACGTACTTCTGAATCTAT 58.500 41.667 0.00 0.00 37.22 1.98
142 144 0.452184 TTTTTGTGTTGCTCGCCGAA 59.548 45.000 0.00 0.00 0.00 4.30
177 179 8.005662 TGATCAAAAATTAAAACTCATGCACG 57.994 30.769 0.00 0.00 0.00 5.34
231 236 9.736414 CCCTTGATAGTTGATGAATAGATGAAT 57.264 33.333 0.00 0.00 0.00 2.57
257 264 8.722342 TCTTATTTTTGATGTTCTTTGTACGC 57.278 30.769 0.00 0.00 0.00 4.42
271 278 8.966868 GGACCTGGATGTAAATCTTATTTTTGA 58.033 33.333 0.00 0.00 0.00 2.69
274 281 7.116736 ACGGACCTGGATGTAAATCTTATTTT 58.883 34.615 0.00 0.00 0.00 1.82
312 319 1.671845 GCTTTGGTGTTTGTGGTCGTA 59.328 47.619 0.00 0.00 0.00 3.43
318 325 0.530431 GGCTGGCTTTGGTGTTTGTG 60.530 55.000 0.00 0.00 0.00 3.33
333 340 2.093783 GGTATTTTCACGTCTTCGGCTG 59.906 50.000 0.00 0.00 41.85 4.85
356 363 9.030452 TGTGTGTCCTTTTTATTTGCCTATAAT 57.970 29.630 0.00 0.00 0.00 1.28
466 478 8.812513 TGGAATTCATCTGTGATTGTTCTTAT 57.187 30.769 7.93 0.00 33.56 1.73
492 504 9.573166 CTTATGGGGAAATTAGAATGTATCACA 57.427 33.333 0.00 0.00 0.00 3.58
612 2419 8.233868 ACTTCGAAAATTTTCAAAGTTTTTGGG 58.766 29.630 24.88 8.87 40.46 4.12
629 2436 4.703093 ACCTGACTTCCAAAACTTCGAAAA 59.297 37.500 0.00 0.00 0.00 2.29
634 2442 3.551846 TGGACCTGACTTCCAAAACTTC 58.448 45.455 0.00 0.00 40.35 3.01
701 2512 1.931841 GGGTCTCGCCGTTCTTTTATC 59.068 52.381 0.00 0.00 38.44 1.75
941 2755 0.391793 GTGGAAGAAGAGGAAGGCGG 60.392 60.000 0.00 0.00 0.00 6.13
1442 3256 0.321830 GAAACCCCAAATCGACGGGA 60.322 55.000 16.23 0.00 46.34 5.14
1524 3359 1.614241 CCCCCTTCTGTGGTCTACCG 61.614 65.000 0.00 0.00 39.43 4.02
1558 3423 8.980143 AACCAACATGGAAATTCGTAAAATAG 57.020 30.769 2.85 0.00 40.96 1.73
1592 3460 1.153168 CGAAGGGGGTACATGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
1600 3468 1.374572 ATTTTGGGACGAAGGGGGTA 58.625 50.000 0.00 0.00 0.00 3.69
1601 3469 1.374572 TATTTTGGGACGAAGGGGGT 58.625 50.000 0.00 0.00 0.00 4.95
1602 3470 2.291346 ACTTATTTTGGGACGAAGGGGG 60.291 50.000 0.00 0.00 0.00 5.40
1603 3471 2.752903 CACTTATTTTGGGACGAAGGGG 59.247 50.000 0.00 0.00 0.00 4.79
1604 3472 3.418047 ACACTTATTTTGGGACGAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
1605 3473 4.324267 AGACACTTATTTTGGGACGAAGG 58.676 43.478 0.00 0.00 0.00 3.46
1606 3474 5.468746 TCAAGACACTTATTTTGGGACGAAG 59.531 40.000 0.00 0.00 0.00 3.79
1607 3475 5.237779 GTCAAGACACTTATTTTGGGACGAA 59.762 40.000 0.00 0.00 0.00 3.85
1608 3476 4.753107 GTCAAGACACTTATTTTGGGACGA 59.247 41.667 0.00 0.00 0.00 4.20
1609 3477 4.083484 GGTCAAGACACTTATTTTGGGACG 60.083 45.833 2.29 0.00 0.00 4.79
1610 3478 5.070685 AGGTCAAGACACTTATTTTGGGAC 58.929 41.667 2.29 0.00 0.00 4.46
1611 3479 5.319043 AGGTCAAGACACTTATTTTGGGA 57.681 39.130 2.29 0.00 0.00 4.37
1612 3480 6.715264 ACTAAGGTCAAGACACTTATTTTGGG 59.285 38.462 2.29 0.00 0.00 4.12
1613 3481 7.745620 ACTAAGGTCAAGACACTTATTTTGG 57.254 36.000 2.29 0.05 0.00 3.28
1614 3482 9.268268 TGTACTAAGGTCAAGACACTTATTTTG 57.732 33.333 2.29 0.34 0.00 2.44
1615 3483 9.841295 TTGTACTAAGGTCAAGACACTTATTTT 57.159 29.630 2.29 0.15 0.00 1.82
1616 3484 9.269453 GTTGTACTAAGGTCAAGACACTTATTT 57.731 33.333 2.29 2.03 0.00 1.40
1617 3485 8.648693 AGTTGTACTAAGGTCAAGACACTTATT 58.351 33.333 2.29 5.06 0.00 1.40
1618 3486 8.191534 AGTTGTACTAAGGTCAAGACACTTAT 57.808 34.615 2.29 2.45 0.00 1.73
1619 3487 7.592885 AGTTGTACTAAGGTCAAGACACTTA 57.407 36.000 2.29 6.73 0.00 2.24
1620 3488 6.481434 AGTTGTACTAAGGTCAAGACACTT 57.519 37.500 2.29 5.99 0.00 3.16
1621 3489 6.481434 AAGTTGTACTAAGGTCAAGACACT 57.519 37.500 2.29 0.00 0.00 3.55
1622 3490 8.828688 AATAAGTTGTACTAAGGTCAAGACAC 57.171 34.615 2.29 0.00 0.00 3.67
1623 3491 9.841295 AAAATAAGTTGTACTAAGGTCAAGACA 57.159 29.630 2.29 0.00 0.00 3.41
1625 3493 9.280174 CCAAAATAAGTTGTACTAAGGTCAAGA 57.720 33.333 0.00 0.00 0.00 3.02
1626 3494 8.512138 CCCAAAATAAGTTGTACTAAGGTCAAG 58.488 37.037 0.00 0.00 0.00 3.02
1627 3495 8.219178 TCCCAAAATAAGTTGTACTAAGGTCAA 58.781 33.333 0.00 0.00 0.00 3.18
1628 3496 7.662669 GTCCCAAAATAAGTTGTACTAAGGTCA 59.337 37.037 0.00 0.00 0.00 4.02
1629 3497 7.148523 CGTCCCAAAATAAGTTGTACTAAGGTC 60.149 40.741 0.00 0.00 0.00 3.85
1630 3498 6.652062 CGTCCCAAAATAAGTTGTACTAAGGT 59.348 38.462 0.00 0.00 0.00 3.50
1631 3499 6.093082 CCGTCCCAAAATAAGTTGTACTAAGG 59.907 42.308 0.00 0.00 0.00 2.69
1632 3500 6.875195 TCCGTCCCAAAATAAGTTGTACTAAG 59.125 38.462 0.00 0.00 0.00 2.18
1633 3501 6.767456 TCCGTCCCAAAATAAGTTGTACTAA 58.233 36.000 0.00 0.00 0.00 2.24
1634 3502 6.357579 TCCGTCCCAAAATAAGTTGTACTA 57.642 37.500 0.00 0.00 0.00 1.82
1635 3503 5.231702 TCCGTCCCAAAATAAGTTGTACT 57.768 39.130 0.00 0.00 0.00 2.73
1636 3504 4.393990 CCTCCGTCCCAAAATAAGTTGTAC 59.606 45.833 0.00 0.00 0.00 2.90
1637 3505 4.566070 CCCTCCGTCCCAAAATAAGTTGTA 60.566 45.833 0.00 0.00 0.00 2.41
1638 3506 3.418047 CCTCCGTCCCAAAATAAGTTGT 58.582 45.455 0.00 0.00 0.00 3.32
1639 3507 2.752903 CCCTCCGTCCCAAAATAAGTTG 59.247 50.000 0.00 0.00 0.00 3.16
1640 3508 2.645797 TCCCTCCGTCCCAAAATAAGTT 59.354 45.455 0.00 0.00 0.00 2.66
1641 3509 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1642 3510 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1643 3511 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1644 3512 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1645 3513 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1646 3514 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
1647 3515 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1648 3516 1.961133 AATTACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
1649 3517 1.557832 CAAATTACTCCCTCCGTCCCA 59.442 52.381 0.00 0.00 0.00 4.37
1650 3518 1.134189 CCAAATTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
1651 3519 1.558294 ACCAAATTACTCCCTCCGTCC 59.442 52.381 0.00 0.00 0.00 4.79
1652 3520 3.345508 AACCAAATTACTCCCTCCGTC 57.654 47.619 0.00 0.00 0.00 4.79
1653 3521 3.199289 CCTAACCAAATTACTCCCTCCGT 59.801 47.826 0.00 0.00 0.00 4.69
1654 3522 3.453353 TCCTAACCAAATTACTCCCTCCG 59.547 47.826 0.00 0.00 0.00 4.63
1655 3523 5.132144 TGATCCTAACCAAATTACTCCCTCC 59.868 44.000 0.00 0.00 0.00 4.30
1656 3524 6.248569 TGATCCTAACCAAATTACTCCCTC 57.751 41.667 0.00 0.00 0.00 4.30
1657 3525 6.389869 TCATGATCCTAACCAAATTACTCCCT 59.610 38.462 0.00 0.00 0.00 4.20
1658 3526 6.601332 TCATGATCCTAACCAAATTACTCCC 58.399 40.000 0.00 0.00 0.00 4.30
1659 3527 8.697507 ATTCATGATCCTAACCAAATTACTCC 57.302 34.615 0.00 0.00 0.00 3.85
1660 3528 9.956720 CAATTCATGATCCTAACCAAATTACTC 57.043 33.333 0.00 0.00 0.00 2.59
1661 3529 8.416329 GCAATTCATGATCCTAACCAAATTACT 58.584 33.333 0.00 0.00 0.00 2.24
1662 3530 7.379529 CGCAATTCATGATCCTAACCAAATTAC 59.620 37.037 0.00 0.00 0.00 1.89
1663 3531 7.424803 CGCAATTCATGATCCTAACCAAATTA 58.575 34.615 0.00 0.00 0.00 1.40
1664 3532 6.275335 CGCAATTCATGATCCTAACCAAATT 58.725 36.000 0.00 0.00 0.00 1.82
1665 3533 5.221303 CCGCAATTCATGATCCTAACCAAAT 60.221 40.000 0.00 0.00 0.00 2.32
1666 3534 4.097741 CCGCAATTCATGATCCTAACCAAA 59.902 41.667 0.00 0.00 0.00 3.28
1667 3535 3.631686 CCGCAATTCATGATCCTAACCAA 59.368 43.478 0.00 0.00 0.00 3.67
1668 3536 3.213506 CCGCAATTCATGATCCTAACCA 58.786 45.455 0.00 0.00 0.00 3.67
1691 3565 3.643792 ACCTATCCTGCTAAGAAATCGCT 59.356 43.478 0.00 0.00 0.00 4.93
1713 3587 3.678056 AGCTACTCGTTCCATTGACAA 57.322 42.857 0.00 0.00 0.00 3.18
1739 3613 2.854185 GCAAACATAAGCAGAAATCGCC 59.146 45.455 0.00 0.00 0.00 5.54
1741 3615 5.393124 TGAAGCAAACATAAGCAGAAATCG 58.607 37.500 0.00 0.00 0.00 3.34
1742 3616 7.758528 AGAATGAAGCAAACATAAGCAGAAATC 59.241 33.333 0.00 0.00 0.00 2.17
1744 3618 6.985117 AGAATGAAGCAAACATAAGCAGAAA 58.015 32.000 0.00 0.00 0.00 2.52
1914 3795 4.021104 ACCGATGACAGAAGATTCAGACAA 60.021 41.667 0.00 0.00 0.00 3.18
1929 3810 6.757010 AGACAGTAAACATATCAACCGATGAC 59.243 38.462 0.00 0.00 41.93 3.06
2096 3979 3.746492 GTCCAAACTGTATGTGTCAGACC 59.254 47.826 0.00 0.00 36.81 3.85
2211 4094 3.861341 TGCCAGTACCTCTTGCATC 57.139 52.632 0.00 0.00 39.40 3.91
2213 4096 0.035152 CCATGCCAGTACCTCTTGCA 60.035 55.000 0.00 0.00 46.29 4.08
2214 4097 0.035056 ACCATGCCAGTACCTCTTGC 60.035 55.000 0.00 0.00 35.67 4.01
2215 4098 2.158900 CCTACCATGCCAGTACCTCTTG 60.159 54.545 0.00 0.00 0.00 3.02
2216 4099 2.119495 CCTACCATGCCAGTACCTCTT 58.881 52.381 0.00 0.00 0.00 2.85
2217 4100 1.794714 CCTACCATGCCAGTACCTCT 58.205 55.000 0.00 0.00 0.00 3.69
2218 4101 0.106894 GCCTACCATGCCAGTACCTC 59.893 60.000 0.00 0.00 0.00 3.85
2219 4102 0.326618 AGCCTACCATGCCAGTACCT 60.327 55.000 0.00 0.00 0.00 3.08
2220 4103 0.106894 GAGCCTACCATGCCAGTACC 59.893 60.000 0.00 0.00 0.00 3.34
2221 4104 0.830648 TGAGCCTACCATGCCAGTAC 59.169 55.000 0.00 0.00 0.00 2.73
2222 4105 1.578897 TTGAGCCTACCATGCCAGTA 58.421 50.000 0.00 0.00 0.00 2.74
2223 4106 0.921896 ATTGAGCCTACCATGCCAGT 59.078 50.000 0.00 0.00 0.00 4.00
2224 4107 1.679680 CAATTGAGCCTACCATGCCAG 59.320 52.381 0.00 0.00 0.00 4.85
2225 4108 1.005805 ACAATTGAGCCTACCATGCCA 59.994 47.619 13.59 0.00 0.00 4.92
2226 4109 1.406539 CACAATTGAGCCTACCATGCC 59.593 52.381 13.59 0.00 0.00 4.40
2227 4110 2.368439 TCACAATTGAGCCTACCATGC 58.632 47.619 13.59 0.00 0.00 4.06
2250 4133 6.766944 ACATGTCAAAAATCTTGCATCCAAAA 59.233 30.769 0.00 0.00 0.00 2.44
2303 4186 5.177511 CCATACATTAACTCGGCATGTGTAG 59.822 44.000 0.00 0.00 33.19 2.74
2308 4191 3.738982 TCCCATACATTAACTCGGCATG 58.261 45.455 0.00 0.00 0.00 4.06
2719 4609 3.076621 GGCAGTCATCTCATGTTGTCAA 58.923 45.455 0.00 0.00 0.00 3.18
2769 4661 3.569194 TGCCAAACACAGAGTTAGGAA 57.431 42.857 0.00 0.00 40.26 3.36
2776 4668 2.546373 CCACCAAATGCCAAACACAGAG 60.546 50.000 0.00 0.00 0.00 3.35
2781 4673 4.529769 TCATAATCCACCAAATGCCAAACA 59.470 37.500 0.00 0.00 0.00 2.83
2876 4768 9.000486 GTAGGTAAGTCTGCTGTAGAAAATTTT 58.000 33.333 2.28 2.28 37.12 1.82
2983 4875 3.110358 GGTTTAGTTTGCGGTTGTTGAC 58.890 45.455 0.00 0.00 0.00 3.18
2993 4885 7.907214 TGAGATCTTCTTAGGTTTAGTTTGC 57.093 36.000 0.00 0.00 0.00 3.68
3035 4927 7.992608 ACAGATGCAAATACATGTCCACTATAA 59.007 33.333 0.00 0.00 0.00 0.98
3037 4929 6.261603 CACAGATGCAAATACATGTCCACTAT 59.738 38.462 0.00 0.00 0.00 2.12
3194 5087 3.557686 GCTTCCCAGGGTAAGTTTCGTTA 60.558 47.826 5.01 0.00 0.00 3.18
3245 5242 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3246 5243 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3247 5244 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3248 5245 4.377897 GTTCTTATATTGTGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
3249 5246 4.049186 CGTTCTTATATTGTGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
3250 5247 3.448301 ACGTTCTTATATTGTGGGACGGA 59.552 43.478 0.00 0.00 0.00 4.69
3251 5248 3.788937 ACGTTCTTATATTGTGGGACGG 58.211 45.455 0.00 0.00 0.00 4.79
3252 5249 5.789710 AAACGTTCTTATATTGTGGGACG 57.210 39.130 0.00 0.00 0.00 4.79
3253 5250 9.333497 GTTAAAAACGTTCTTATATTGTGGGAC 57.667 33.333 0.00 0.00 0.00 4.46
3254 5251 9.064706 TGTTAAAAACGTTCTTATATTGTGGGA 57.935 29.630 0.00 0.00 0.00 4.37
3255 5252 9.120422 GTGTTAAAAACGTTCTTATATTGTGGG 57.880 33.333 0.00 0.00 0.00 4.61
3256 5253 9.887406 AGTGTTAAAAACGTTCTTATATTGTGG 57.113 29.630 0.00 0.00 0.00 4.17
3264 5261 9.801873 ACTAGTGTAGTGTTAAAAACGTTCTTA 57.198 29.630 0.00 0.00 37.69 2.10
3265 5262 8.707938 ACTAGTGTAGTGTTAAAAACGTTCTT 57.292 30.769 0.00 0.00 37.69 2.52
3280 5277 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
3281 5278 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
3282 5279 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
3288 5285 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
3289 5286 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
3290 5287 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
3291 5288 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
3292 5289 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
3293 5290 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
3294 5291 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
3295 5292 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
3296 5293 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
3297 5294 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
3298 5295 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
3299 5296 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3300 5297 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3301 5298 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3302 5299 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3303 5300 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3304 5301 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3305 5302 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3306 5303 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3307 5304 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3308 5305 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3309 5306 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3310 5307 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3311 5308 3.400322 AGTATATACTCCCTCCGTCCCAA 59.600 47.826 9.71 0.00 0.00 4.12
3312 5309 2.991713 AGTATATACTCCCTCCGTCCCA 59.008 50.000 9.71 0.00 0.00 4.37
3313 5310 3.735720 AGTATATACTCCCTCCGTCCC 57.264 52.381 9.71 0.00 0.00 4.46
3314 5311 5.814481 ACTTAGTATATACTCCCTCCGTCC 58.186 45.833 18.68 0.00 37.73 4.79
3315 5312 8.100164 ACTAACTTAGTATATACTCCCTCCGTC 58.900 40.741 18.68 0.00 37.23 4.79
3316 5313 7.983363 ACTAACTTAGTATATACTCCCTCCGT 58.017 38.462 18.68 8.40 37.23 4.69
3317 5314 8.860780 AACTAACTTAGTATATACTCCCTCCG 57.139 38.462 18.68 7.84 38.26 4.63
3344 5341 4.142160 CGGTCTCATGGAAGTCATCTTACA 60.142 45.833 0.00 0.00 46.88 2.41
3366 5363 8.417176 GCTTCTTGACAACAAAAATACATAACG 58.583 33.333 0.00 0.00 35.49 3.18
3511 5509 0.392193 GGCCAGTGAGTGACCATCAG 60.392 60.000 0.00 0.00 0.00 2.90
3584 5582 2.111756 GCAACTTCAACAACTGCTTCG 58.888 47.619 0.00 0.00 0.00 3.79
3699 5697 3.437741 TGGCAATATCAGATATGCAAGCG 59.562 43.478 18.68 0.00 0.00 4.68
3769 5767 2.625737 CTAACCTGACACATGCTCTGG 58.374 52.381 12.79 12.79 33.90 3.86
3822 5820 0.042731 TCCACCTCCCCTCCTTGTAG 59.957 60.000 0.00 0.00 0.00 2.74
3944 5942 1.541889 CCATCCGGACCATCAGACATG 60.542 57.143 6.12 0.00 0.00 3.21
3946 5944 0.325203 TCCATCCGGACCATCAGACA 60.325 55.000 6.12 0.00 35.91 3.41
3988 5986 2.031120 CTACTGCTCTTCCCTCCAGAG 58.969 57.143 0.00 0.00 40.84 3.35
4181 6179 0.399454 ACTGCTGAGCACAAGGACAT 59.601 50.000 1.40 0.00 33.79 3.06
4250 6257 3.290710 ACATGAATAAGCGCCCAGAAAT 58.709 40.909 2.29 0.00 0.00 2.17
4469 6476 8.955061 AACACAATAAAGAACTGAAATCATCG 57.045 30.769 0.00 0.00 0.00 3.84
4502 6511 3.057526 GCAACCCAGAGAACATAACCAAC 60.058 47.826 0.00 0.00 0.00 3.77
4543 6552 5.452078 TTCAACTGATGGAATTGAACCAC 57.548 39.130 0.00 0.00 40.36 4.16
4608 6617 2.440409 CTGGTGTAGCTGGCAAAGAAT 58.560 47.619 0.00 0.00 0.00 2.40
4702 6713 1.672356 CGCCTGTTGGGACTCAAGG 60.672 63.158 0.00 0.00 35.80 3.61
4712 6723 2.084610 TCTCAAGATGACGCCTGTTG 57.915 50.000 0.00 0.00 0.00 3.33
4748 6759 1.737816 GATAAGCGGCACCGGACTA 59.262 57.895 9.46 0.00 40.19 2.59
4750 6761 2.960129 CGATAAGCGGCACCGGAC 60.960 66.667 9.46 0.00 40.19 4.79
4805 6824 3.342377 TTTGTGGGAACGAGATGCATA 57.658 42.857 0.00 0.00 0.00 3.14
4820 6839 3.118542 GCTTCCTCTGCAAGTTTTTGTG 58.881 45.455 0.00 0.00 36.65 3.33
4833 6852 5.128919 AGAATATCGCAAAATGCTTCCTCT 58.871 37.500 0.43 0.00 42.25 3.69
4849 6868 5.643339 AAATCGAGCGTGTCAAGAATATC 57.357 39.130 0.00 0.00 0.00 1.63
4855 6874 3.181521 TGCAATAAATCGAGCGTGTCAAG 60.182 43.478 0.00 0.00 0.00 3.02
4934 6953 2.068834 TCCCAATCCTCCTCTACGAC 57.931 55.000 0.00 0.00 0.00 4.34
4942 6961 5.804771 GCAGGTAAATCTATCCCAATCCTCC 60.805 48.000 0.00 0.00 0.00 4.30
5029 7051 5.233902 CGCTCAAATCCTCATCTACTGAAAG 59.766 44.000 0.00 0.00 42.29 2.62
5065 7087 1.067915 GGCTACGAAATGGCAAAGCAA 60.068 47.619 0.00 0.00 36.24 3.91
5122 7144 0.447801 GAGGTTATGTGGCTGCAACG 59.552 55.000 2.19 0.00 0.00 4.10
5130 7152 0.255890 CCAGGGGTGAGGTTATGTGG 59.744 60.000 0.00 0.00 0.00 4.17
5181 7203 5.368145 GTGCCTATTCATGACATTAGACCA 58.632 41.667 0.00 0.00 0.00 4.02
5211 7234 6.808829 TCATTTCTGGTAAATACGACGGTAT 58.191 36.000 0.00 0.00 41.09 2.73
5274 7297 1.920051 CCAGATCACGTCGCAATCG 59.080 57.895 0.00 0.00 0.00 3.34
5280 7303 1.590238 GAGAAATGCCAGATCACGTCG 59.410 52.381 0.00 0.00 0.00 5.12
5327 7350 8.699130 GGGGATAAAAATCAATGATCAAAGACT 58.301 33.333 0.00 0.00 0.00 3.24
5330 7353 8.921205 AGAGGGGATAAAAATCAATGATCAAAG 58.079 33.333 0.00 0.00 0.00 2.77
5415 7712 7.129425 AGGAAGATTCAGTTATCTCCAGTAGT 58.871 38.462 0.00 0.00 33.81 2.73
5416 7713 7.595819 AGGAAGATTCAGTTATCTCCAGTAG 57.404 40.000 0.00 0.00 33.81 2.57
5470 8049 7.518211 CGAACACAAATCAAGTTGAGATACACA 60.518 37.037 11.91 0.00 32.59 3.72
5495 8074 3.947868 AGGATGATCCATGCTAAATCCG 58.052 45.455 14.90 0.00 40.60 4.18
5513 8092 0.620556 GGACATCTCCAGCCAAAGGA 59.379 55.000 0.00 0.00 36.42 3.36
5548 8127 8.922058 AGATTTAATGATTCATGTTGCTTGAC 57.078 30.769 0.00 0.00 0.00 3.18
5628 8207 9.500785 TTTTCATCTTGTCATTATGTCTGTACA 57.499 29.630 0.00 0.00 40.69 2.90
5633 8212 8.058667 TGCATTTTCATCTTGTCATTATGTCT 57.941 30.769 0.00 0.00 0.00 3.41
5635 8214 7.833786 ACTGCATTTTCATCTTGTCATTATGT 58.166 30.769 0.00 0.00 0.00 2.29
5639 8218 7.458409 AGTACTGCATTTTCATCTTGTCATT 57.542 32.000 0.00 0.00 0.00 2.57
5643 8222 9.672673 AAGTATAGTACTGCATTTTCATCTTGT 57.327 29.630 5.39 0.00 39.39 3.16
5655 8235 4.332543 GCATGTTGCAAGTATAGTACTGCA 59.667 41.667 5.39 3.12 44.26 4.41
5729 8313 3.937079 CACTATCTTGCTCATGCTTGTCA 59.063 43.478 0.00 0.00 40.48 3.58
5753 8337 3.659786 ACAGAACTATTGCACGCTTGTA 58.340 40.909 0.00 0.00 0.00 2.41
5911 8495 2.807622 GCCCATGTTGCGGAATCC 59.192 61.111 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.