Multiple sequence alignment - TraesCS6A01G078700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G078700 chr6A 100.000 3110 0 0 1 3110 48524265 48527374 0.000000e+00 5744
1 TraesCS6A01G078700 chr6A 100.000 2366 0 0 3190 5555 48527454 48529819 0.000000e+00 4370
2 TraesCS6A01G078700 chr6A 99.640 834 3 0 2277 3110 205097139 205097972 0.000000e+00 1524
3 TraesCS6A01G078700 chr6A 98.559 833 12 0 2278 3110 12299627 12298795 0.000000e+00 1472
4 TraesCS6A01G078700 chr6A 99.707 341 1 0 3190 3530 205098025 205098365 4.720000e-175 625
5 TraesCS6A01G078700 chr6A 98.413 63 1 0 5035 5097 203770766 203770704 1.640000e-20 111
6 TraesCS6A01G078700 chr6A 96.970 66 1 1 5032 5097 218758420 218758356 5.880000e-20 110
7 TraesCS6A01G078700 chr6B 93.878 1519 67 10 3532 5035 85709858 85711365 0.000000e+00 2266
8 TraesCS6A01G078700 chr6B 89.370 1731 114 27 586 2272 85708163 85709867 0.000000e+00 2113
9 TraesCS6A01G078700 chr6B 99.035 829 8 0 2273 3101 2801668 2800840 0.000000e+00 1487
10 TraesCS6A01G078700 chr6B 98.914 829 9 0 2278 3106 636207468 636206640 0.000000e+00 1482
11 TraesCS6A01G078700 chr6B 99.026 821 8 0 2277 3097 204479275 204478455 0.000000e+00 1472
12 TraesCS6A01G078700 chr6B 98.547 344 5 0 3190 3533 636206586 636206243 4.760000e-170 608
13 TraesCS6A01G078700 chr6B 97.965 344 7 0 3190 3533 636180501 636180158 1.030000e-166 597
14 TraesCS6A01G078700 chr6B 92.857 266 16 3 139 403 579179504 579179241 3.140000e-102 383
15 TraesCS6A01G078700 chr6B 87.135 342 28 10 5188 5523 85713179 85713510 1.890000e-99 374
16 TraesCS6A01G078700 chr6B 89.796 147 10 1 400 546 85707931 85708072 3.420000e-42 183
17 TraesCS6A01G078700 chr6B 95.000 100 3 2 13 112 85707825 85707922 7.450000e-34 156
18 TraesCS6A01G078700 chr6B 92.771 83 4 2 5094 5174 85711350 85711432 9.780000e-23 119
19 TraesCS6A01G078700 chr6D 93.148 1547 61 22 3532 5035 36781910 36783454 0.000000e+00 2228
20 TraesCS6A01G078700 chr6D 90.083 1563 98 12 742 2277 36780392 36781924 0.000000e+00 1975
21 TraesCS6A01G078700 chr6D 87.226 274 22 6 5285 5555 36783576 36783839 3.250000e-77 300
22 TraesCS6A01G078700 chr6D 91.270 126 9 2 5094 5217 36783439 36783564 2.660000e-38 171
23 TraesCS6A01G078700 chr6D 87.162 148 13 5 400 546 36780122 36780264 4.450000e-36 163
24 TraesCS6A01G078700 chr6D 92.857 112 6 2 1 112 36780004 36780113 1.600000e-35 161
25 TraesCS6A01G078700 chr3B 99.401 835 5 0 2276 3110 828406226 828405392 0.000000e+00 1515
26 TraesCS6A01G078700 chr3B 82.797 994 155 11 3568 4553 779194874 779195859 0.000000e+00 874
27 TraesCS6A01G078700 chr3B 98.256 344 6 0 3190 3533 828405338 828404995 2.210000e-168 603
28 TraesCS6A01G078700 chr7A 99.399 832 4 1 2276 3107 617484810 617485640 0.000000e+00 1507
29 TraesCS6A01G078700 chr7A 81.989 905 161 2 3659 4562 81003508 81004411 0.000000e+00 767
30 TraesCS6A01G078700 chr2B 98.921 834 8 1 2277 3110 393997981 393997149 0.000000e+00 1489
31 TraesCS6A01G078700 chr2B 97.840 324 7 0 3190 3513 393997096 393996773 1.350000e-155 560
32 TraesCS6A01G078700 chr2B 91.912 272 19 2 135 406 458090526 458090258 1.460000e-100 377
33 TraesCS6A01G078700 chr2A 99.507 812 4 0 2273 3084 108030382 108031193 0.000000e+00 1478
34 TraesCS6A01G078700 chr2A 92.674 273 18 2 135 407 1507298 1507028 5.220000e-105 392
35 TraesCS6A01G078700 chr3D 81.525 1023 178 8 3579 4598 582231884 582230870 0.000000e+00 832
36 TraesCS6A01G078700 chr3D 94.318 352 11 4 3191 3533 520370612 520370261 1.060000e-146 531
37 TraesCS6A01G078700 chr3D 100.000 62 0 0 5036 5097 380491666 380491605 1.260000e-21 115
38 TraesCS6A01G078700 chr5B 82.889 900 146 3 3656 4548 694154661 694153763 0.000000e+00 802
39 TraesCS6A01G078700 chr5B 98.827 341 4 0 3190 3530 547098535 547098875 4.760000e-170 608
40 TraesCS6A01G078700 chr5B 97.892 332 7 0 3202 3533 631938623 631938292 4.830000e-160 575
41 TraesCS6A01G078700 chr4A 82.673 883 141 7 3679 4554 613399855 613398978 0.000000e+00 773
42 TraesCS6A01G078700 chr4A 93.585 265 16 1 139 403 470875149 470875412 1.450000e-105 394
43 TraesCS6A01G078700 chr4A 98.438 64 1 0 5034 5097 605896290 605896227 4.550000e-21 113
44 TraesCS6A01G078700 chr4A 98.438 64 1 0 5034 5097 606119042 606118979 4.550000e-21 113
45 TraesCS6A01G078700 chr3A 80.402 995 187 6 3567 4554 1897533 1896540 0.000000e+00 750
46 TraesCS6A01G078700 chr3A 92.830 265 18 1 139 403 488313630 488313893 3.140000e-102 383
47 TraesCS6A01G078700 chr7B 98.256 344 6 0 3190 3533 603836524 603836181 2.210000e-168 603
48 TraesCS6A01G078700 chr7D 82.190 612 107 2 3659 4269 77176164 77176774 4.930000e-145 525
49 TraesCS6A01G078700 chr7D 84.512 297 46 0 4266 4562 77183063 77183359 1.510000e-75 294
50 TraesCS6A01G078700 chr1A 95.472 265 11 1 139 403 56599795 56600058 6.650000e-114 422
51 TraesCS6A01G078700 chr1A 93.309 269 16 2 135 403 546321103 546321369 4.030000e-106 396
52 TraesCS6A01G078700 chr1A 97.059 68 2 0 5030 5097 494318185 494318118 1.260000e-21 115
53 TraesCS6A01G078700 chr5A 92.830 265 17 2 139 403 370726642 370726904 3.140000e-102 383
54 TraesCS6A01G078700 chr5A 91.912 272 20 2 135 406 51462295 51462026 4.060000e-101 379
55 TraesCS6A01G078700 chr5A 100.000 62 0 0 5036 5097 626369003 626369064 1.260000e-21 115
56 TraesCS6A01G078700 chr5D 100.000 64 0 0 5034 5097 335881589 335881652 9.780000e-23 119
57 TraesCS6A01G078700 chrUn 98.413 63 1 0 5035 5097 3918490 3918428 1.640000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G078700 chr6A 48524265 48529819 5554 False 5057.0 5744 100.0000 1 5555 2 chr6A.!!$F1 5554
1 TraesCS6A01G078700 chr6A 12298795 12299627 832 True 1472.0 1472 98.5590 2278 3110 1 chr6A.!!$R1 832
2 TraesCS6A01G078700 chr6A 205097139 205098365 1226 False 1074.5 1524 99.6735 2277 3530 2 chr6A.!!$F2 1253
3 TraesCS6A01G078700 chr6B 2800840 2801668 828 True 1487.0 1487 99.0350 2273 3101 1 chr6B.!!$R1 828
4 TraesCS6A01G078700 chr6B 204478455 204479275 820 True 1472.0 1472 99.0260 2277 3097 1 chr6B.!!$R2 820
5 TraesCS6A01G078700 chr6B 636206243 636207468 1225 True 1045.0 1482 98.7305 2278 3533 2 chr6B.!!$R5 1255
6 TraesCS6A01G078700 chr6B 85707825 85713510 5685 False 868.5 2266 91.3250 13 5523 6 chr6B.!!$F1 5510
7 TraesCS6A01G078700 chr6D 36780004 36783839 3835 False 833.0 2228 90.2910 1 5555 6 chr6D.!!$F1 5554
8 TraesCS6A01G078700 chr3B 828404995 828406226 1231 True 1059.0 1515 98.8285 2276 3533 2 chr3B.!!$R1 1257
9 TraesCS6A01G078700 chr3B 779194874 779195859 985 False 874.0 874 82.7970 3568 4553 1 chr3B.!!$F1 985
10 TraesCS6A01G078700 chr7A 617484810 617485640 830 False 1507.0 1507 99.3990 2276 3107 1 chr7A.!!$F2 831
11 TraesCS6A01G078700 chr7A 81003508 81004411 903 False 767.0 767 81.9890 3659 4562 1 chr7A.!!$F1 903
12 TraesCS6A01G078700 chr2B 393996773 393997981 1208 True 1024.5 1489 98.3805 2277 3513 2 chr2B.!!$R2 1236
13 TraesCS6A01G078700 chr2A 108030382 108031193 811 False 1478.0 1478 99.5070 2273 3084 1 chr2A.!!$F1 811
14 TraesCS6A01G078700 chr3D 582230870 582231884 1014 True 832.0 832 81.5250 3579 4598 1 chr3D.!!$R3 1019
15 TraesCS6A01G078700 chr5B 694153763 694154661 898 True 802.0 802 82.8890 3656 4548 1 chr5B.!!$R2 892
16 TraesCS6A01G078700 chr4A 613398978 613399855 877 True 773.0 773 82.6730 3679 4554 1 chr4A.!!$R3 875
17 TraesCS6A01G078700 chr3A 1896540 1897533 993 True 750.0 750 80.4020 3567 4554 1 chr3A.!!$R1 987
18 TraesCS6A01G078700 chr7D 77176164 77176774 610 False 525.0 525 82.1900 3659 4269 1 chr7D.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.176680 CGCTTCAGGCTGGTCATAGT 59.823 55.000 15.73 0.00 39.13 2.12 F
535 537 0.531657 TGCCAGCATGCACCATTAAC 59.468 50.000 21.98 0.58 36.04 2.01 F
1821 1937 0.250467 TGTGGTCTGCTCCAGAAAGC 60.250 55.000 0.00 0.00 42.46 3.51 F
2042 2159 0.695924 TTCCCCGAGAATTCTTGGCA 59.304 50.000 29.94 18.46 44.60 4.92 F
2223 2340 1.999024 GTTGCCACCAAACAACAACAG 59.001 47.619 0.00 0.00 44.39 3.16 F
3628 3745 4.991056 TCAGAGCAAGAACTGTGTATGAAC 59.009 41.667 0.00 0.00 35.84 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 1307 0.248866 GTGAACCAGGTGCCAAAACG 60.249 55.000 0.0 0.0 0.00 3.60 R
1928 2045 0.539051 CTCCCTCGAACAGCCAAGAT 59.461 55.000 0.0 0.0 0.00 2.40 R
3628 3745 0.744281 AAAACCACAAGGCTTCCGTG 59.256 50.000 10.0 10.0 38.88 4.94 R
3944 4067 1.067516 GCTTCCAGCTCAGTTTTGCAA 59.932 47.619 0.0 0.0 38.45 4.08 R
4285 4408 7.646314 GGAAAGTAAGTAAAGTTCCCTTGTTC 58.354 38.462 0.0 0.0 33.10 3.18 R
4908 5078 0.038744 ACCATTGAGGACCCTGCTTG 59.961 55.000 0.0 0.0 41.22 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.387565 GTTGTGGGGTTGCGTTCAAT 59.612 50.000 0.00 0.00 34.29 2.57
114 115 0.671251 TGTGGGGTTGCGTTCAATTC 59.329 50.000 0.00 0.00 34.29 2.17
115 116 0.671251 GTGGGGTTGCGTTCAATTCA 59.329 50.000 0.00 0.00 34.29 2.57
116 117 1.067821 GTGGGGTTGCGTTCAATTCAA 59.932 47.619 0.00 0.00 34.29 2.69
117 118 1.067821 TGGGGTTGCGTTCAATTCAAC 59.932 47.619 0.00 0.00 39.32 3.18
121 122 3.347958 GTTGCGTTCAATTCAACCTGA 57.652 42.857 0.00 0.00 35.36 3.86
122 123 3.042887 GTTGCGTTCAATTCAACCTGAC 58.957 45.455 0.00 0.00 35.36 3.51
123 124 2.571212 TGCGTTCAATTCAACCTGACT 58.429 42.857 0.00 0.00 0.00 3.41
124 125 3.734463 TGCGTTCAATTCAACCTGACTA 58.266 40.909 0.00 0.00 0.00 2.59
125 126 3.496884 TGCGTTCAATTCAACCTGACTAC 59.503 43.478 0.00 0.00 0.00 2.73
126 127 3.423123 GCGTTCAATTCAACCTGACTACG 60.423 47.826 0.00 0.00 0.00 3.51
127 128 3.739300 CGTTCAATTCAACCTGACTACGT 59.261 43.478 0.00 0.00 0.00 3.57
128 129 4.376008 CGTTCAATTCAACCTGACTACGTG 60.376 45.833 0.00 0.00 0.00 4.49
129 130 3.064207 TCAATTCAACCTGACTACGTGC 58.936 45.455 0.00 0.00 0.00 5.34
130 131 1.710013 ATTCAACCTGACTACGTGCG 58.290 50.000 0.00 0.00 0.00 5.34
131 132 0.942410 TTCAACCTGACTACGTGCGC 60.942 55.000 0.00 0.00 0.00 6.09
132 133 2.048503 AACCTGACTACGTGCGCC 60.049 61.111 4.18 0.00 0.00 6.53
133 134 3.909258 AACCTGACTACGTGCGCCG 62.909 63.158 15.25 15.25 44.03 6.46
135 136 4.778415 CTGACTACGTGCGCCGCT 62.778 66.667 11.67 7.98 41.42 5.52
136 137 4.351938 TGACTACGTGCGCCGCTT 62.352 61.111 11.67 0.00 41.42 4.68
137 138 3.542742 GACTACGTGCGCCGCTTC 61.543 66.667 11.67 2.45 41.42 3.86
138 139 4.351938 ACTACGTGCGCCGCTTCA 62.352 61.111 11.67 0.00 41.42 3.02
139 140 3.545481 CTACGTGCGCCGCTTCAG 61.545 66.667 11.67 1.14 41.42 3.02
148 149 2.270205 CCGCTTCAGGCTGGTCAT 59.730 61.111 15.73 0.00 39.13 3.06
149 150 1.522092 CCGCTTCAGGCTGGTCATA 59.478 57.895 15.73 0.00 39.13 2.15
150 151 0.531532 CCGCTTCAGGCTGGTCATAG 60.532 60.000 15.73 5.98 39.13 2.23
151 152 0.176680 CGCTTCAGGCTGGTCATAGT 59.823 55.000 15.73 0.00 39.13 2.12
152 153 1.661341 GCTTCAGGCTGGTCATAGTG 58.339 55.000 15.73 0.00 38.06 2.74
153 154 1.745141 GCTTCAGGCTGGTCATAGTGG 60.745 57.143 15.73 0.00 38.06 4.00
154 155 0.911769 TTCAGGCTGGTCATAGTGGG 59.088 55.000 15.73 0.00 0.00 4.61
155 156 0.982852 TCAGGCTGGTCATAGTGGGG 60.983 60.000 15.73 0.00 0.00 4.96
156 157 0.982852 CAGGCTGGTCATAGTGGGGA 60.983 60.000 6.61 0.00 0.00 4.81
157 158 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
158 159 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
159 160 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
160 161 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
161 162 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
162 163 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
163 164 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
164 165 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
165 166 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
166 167 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
167 168 6.552350 TGGTCATAGTGGGGAGTAACTTATAC 59.448 42.308 0.00 0.00 0.00 1.47
168 169 6.781507 GGTCATAGTGGGGAGTAACTTATACT 59.218 42.308 0.00 0.00 0.00 2.12
169 170 7.946776 GGTCATAGTGGGGAGTAACTTATACTA 59.053 40.741 0.00 0.00 0.00 1.82
170 171 9.012161 GTCATAGTGGGGAGTAACTTATACTAG 57.988 40.741 0.00 0.00 0.00 2.57
171 172 8.730948 TCATAGTGGGGAGTAACTTATACTAGT 58.269 37.037 0.00 0.00 0.00 2.57
172 173 8.794553 CATAGTGGGGAGTAACTTATACTAGTG 58.205 40.741 5.39 0.00 0.00 2.74
173 174 6.739664 AGTGGGGAGTAACTTATACTAGTGT 58.260 40.000 5.39 0.39 0.00 3.55
174 175 6.832900 AGTGGGGAGTAACTTATACTAGTGTC 59.167 42.308 5.39 0.00 0.00 3.67
175 176 6.604795 GTGGGGAGTAACTTATACTAGTGTCA 59.395 42.308 5.39 0.00 0.00 3.58
176 177 7.287235 GTGGGGAGTAACTTATACTAGTGTCAT 59.713 40.741 5.39 0.00 0.00 3.06
177 178 7.287005 TGGGGAGTAACTTATACTAGTGTCATG 59.713 40.741 5.39 0.00 0.00 3.07
178 179 7.146648 GGGAGTAACTTATACTAGTGTCATGC 58.853 42.308 5.39 0.00 0.00 4.06
179 180 7.201884 GGGAGTAACTTATACTAGTGTCATGCA 60.202 40.741 5.39 0.00 0.00 3.96
180 181 8.361139 GGAGTAACTTATACTAGTGTCATGCAT 58.639 37.037 5.39 0.00 0.00 3.96
197 198 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
198 199 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
199 200 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
200 201 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
201 202 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
202 203 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
203 204 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
207 208 8.930846 TGACACTAGTCTAAGTTACTACCTTT 57.069 34.615 0.00 0.00 45.20 3.11
215 216 9.471702 AGTCTAAGTTACTACCTTTATAGTGCA 57.528 33.333 0.00 0.00 36.09 4.57
251 252 8.978874 TTATTAGTGTCATATGTGGCTTCATT 57.021 30.769 1.90 0.00 0.00 2.57
252 253 7.886629 ATTAGTGTCATATGTGGCTTCATTT 57.113 32.000 1.90 0.00 0.00 2.32
253 254 8.978874 ATTAGTGTCATATGTGGCTTCATTTA 57.021 30.769 1.90 0.00 0.00 1.40
254 255 8.800370 TTAGTGTCATATGTGGCTTCATTTAA 57.200 30.769 1.90 0.00 0.00 1.52
255 256 7.886629 AGTGTCATATGTGGCTTCATTTAAT 57.113 32.000 1.90 0.00 0.00 1.40
256 257 7.709947 AGTGTCATATGTGGCTTCATTTAATG 58.290 34.615 1.90 0.00 0.00 1.90
257 258 6.919662 GTGTCATATGTGGCTTCATTTAATGG 59.080 38.462 5.02 0.00 0.00 3.16
258 259 5.922544 GTCATATGTGGCTTCATTTAATGGC 59.077 40.000 5.02 1.63 0.00 4.40
259 260 5.834742 TCATATGTGGCTTCATTTAATGGCT 59.165 36.000 5.02 0.00 0.00 4.75
260 261 6.324512 TCATATGTGGCTTCATTTAATGGCTT 59.675 34.615 5.02 0.00 0.00 4.35
261 262 4.191033 TGTGGCTTCATTTAATGGCTTG 57.809 40.909 5.02 0.00 0.00 4.01
262 263 3.577848 TGTGGCTTCATTTAATGGCTTGT 59.422 39.130 5.02 0.00 0.00 3.16
263 264 4.769488 TGTGGCTTCATTTAATGGCTTGTA 59.231 37.500 5.02 0.00 0.00 2.41
264 265 5.105797 TGTGGCTTCATTTAATGGCTTGTAG 60.106 40.000 5.02 0.00 0.00 2.74
265 266 5.125417 GTGGCTTCATTTAATGGCTTGTAGA 59.875 40.000 5.02 0.00 0.00 2.59
266 267 5.125417 TGGCTTCATTTAATGGCTTGTAGAC 59.875 40.000 5.02 0.00 0.00 2.59
267 268 5.358160 GGCTTCATTTAATGGCTTGTAGACT 59.642 40.000 5.02 0.00 0.00 3.24
268 269 6.458888 GGCTTCATTTAATGGCTTGTAGACTC 60.459 42.308 5.02 0.00 0.00 3.36
269 270 6.094048 GCTTCATTTAATGGCTTGTAGACTCA 59.906 38.462 5.02 0.00 0.00 3.41
270 271 7.201767 GCTTCATTTAATGGCTTGTAGACTCAT 60.202 37.037 5.02 0.00 0.00 2.90
271 272 7.792374 TCATTTAATGGCTTGTAGACTCATC 57.208 36.000 5.02 0.00 0.00 2.92
272 273 7.568349 TCATTTAATGGCTTGTAGACTCATCT 58.432 34.615 5.02 0.00 39.15 2.90
273 274 8.049117 TCATTTAATGGCTTGTAGACTCATCTT 58.951 33.333 5.02 0.00 36.29 2.40
274 275 9.330063 CATTTAATGGCTTGTAGACTCATCTTA 57.670 33.333 0.00 0.00 36.29 2.10
276 277 9.547753 TTTAATGGCTTGTAGACTCATCTTATC 57.452 33.333 0.00 0.00 36.29 1.75
277 278 6.992664 ATGGCTTGTAGACTCATCTTATCT 57.007 37.500 0.00 0.00 36.29 1.98
278 279 6.798427 TGGCTTGTAGACTCATCTTATCTT 57.202 37.500 0.00 0.00 36.29 2.40
279 280 6.577103 TGGCTTGTAGACTCATCTTATCTTG 58.423 40.000 0.00 0.00 36.29 3.02
280 281 5.988561 GGCTTGTAGACTCATCTTATCTTGG 59.011 44.000 0.00 0.00 36.29 3.61
281 282 5.988561 GCTTGTAGACTCATCTTATCTTGGG 59.011 44.000 0.00 0.00 36.29 4.12
282 283 6.183360 GCTTGTAGACTCATCTTATCTTGGGA 60.183 42.308 0.00 0.00 36.29 4.37
283 284 7.633772 GCTTGTAGACTCATCTTATCTTGGGAA 60.634 40.741 0.00 0.00 36.29 3.97
284 285 7.353414 TGTAGACTCATCTTATCTTGGGAAG 57.647 40.000 0.00 0.00 36.29 3.46
285 286 5.289083 AGACTCATCTTATCTTGGGAAGC 57.711 43.478 0.00 0.00 0.00 3.86
286 287 4.054671 GACTCATCTTATCTTGGGAAGCG 58.945 47.826 0.00 0.00 0.00 4.68
287 288 2.805099 CTCATCTTATCTTGGGAAGCGC 59.195 50.000 0.00 0.00 0.00 5.92
288 289 2.435805 TCATCTTATCTTGGGAAGCGCT 59.564 45.455 2.64 2.64 0.00 5.92
289 290 3.641436 TCATCTTATCTTGGGAAGCGCTA 59.359 43.478 12.05 0.00 0.00 4.26
290 291 4.284490 TCATCTTATCTTGGGAAGCGCTAT 59.716 41.667 12.05 0.00 0.00 2.97
291 292 5.480422 TCATCTTATCTTGGGAAGCGCTATA 59.520 40.000 12.05 0.00 0.00 1.31
292 293 6.155221 TCATCTTATCTTGGGAAGCGCTATAT 59.845 38.462 12.05 0.00 0.00 0.86
293 294 6.360370 TCTTATCTTGGGAAGCGCTATATT 57.640 37.500 12.05 0.00 0.00 1.28
294 295 7.476540 TCTTATCTTGGGAAGCGCTATATTA 57.523 36.000 12.05 0.00 0.00 0.98
295 296 7.321153 TCTTATCTTGGGAAGCGCTATATTAC 58.679 38.462 12.05 0.00 0.00 1.89
296 297 4.948341 TCTTGGGAAGCGCTATATTACA 57.052 40.909 12.05 1.24 0.00 2.41
297 298 4.883083 TCTTGGGAAGCGCTATATTACAG 58.117 43.478 12.05 1.15 0.00 2.74
298 299 4.344102 TCTTGGGAAGCGCTATATTACAGT 59.656 41.667 12.05 0.00 0.00 3.55
299 300 5.537295 TCTTGGGAAGCGCTATATTACAGTA 59.463 40.000 12.05 0.00 0.00 2.74
300 301 5.794726 TGGGAAGCGCTATATTACAGTAA 57.205 39.130 12.05 0.00 0.00 2.24
301 302 5.535333 TGGGAAGCGCTATATTACAGTAAC 58.465 41.667 12.05 0.00 0.00 2.50
302 303 5.069383 TGGGAAGCGCTATATTACAGTAACA 59.931 40.000 12.05 0.00 0.00 2.41
303 304 6.164176 GGGAAGCGCTATATTACAGTAACAT 58.836 40.000 12.05 0.00 0.00 2.71
304 305 7.039574 TGGGAAGCGCTATATTACAGTAACATA 60.040 37.037 12.05 0.00 0.00 2.29
305 306 7.980099 GGGAAGCGCTATATTACAGTAACATAT 59.020 37.037 12.05 0.00 0.00 1.78
306 307 9.367444 GGAAGCGCTATATTACAGTAACATATT 57.633 33.333 12.05 0.00 0.00 1.28
334 335 9.158233 TGTTACCACTTCTTATTAACTACATGC 57.842 33.333 0.00 0.00 0.00 4.06
335 336 8.610035 GTTACCACTTCTTATTAACTACATGCC 58.390 37.037 0.00 0.00 0.00 4.40
336 337 6.717289 ACCACTTCTTATTAACTACATGCCA 58.283 36.000 0.00 0.00 0.00 4.92
337 338 6.598064 ACCACTTCTTATTAACTACATGCCAC 59.402 38.462 0.00 0.00 0.00 5.01
338 339 6.597672 CCACTTCTTATTAACTACATGCCACA 59.402 38.462 0.00 0.00 0.00 4.17
339 340 7.283127 CCACTTCTTATTAACTACATGCCACAT 59.717 37.037 0.00 0.00 0.00 3.21
340 341 9.325198 CACTTCTTATTAACTACATGCCACATA 57.675 33.333 0.00 0.00 0.00 2.29
341 342 9.899661 ACTTCTTATTAACTACATGCCACATAA 57.100 29.630 0.00 0.00 0.00 1.90
343 344 8.378172 TCTTATTAACTACATGCCACATAAGC 57.622 34.615 0.00 0.00 0.00 3.09
344 345 7.990314 TCTTATTAACTACATGCCACATAAGCA 59.010 33.333 0.00 0.00 45.94 3.91
345 346 8.512966 TTATTAACTACATGCCACATAAGCAA 57.487 30.769 0.00 0.00 44.83 3.91
346 347 6.825944 TTAACTACATGCCACATAAGCAAA 57.174 33.333 0.00 0.00 44.83 3.68
347 348 5.920193 AACTACATGCCACATAAGCAAAT 57.080 34.783 0.00 0.00 44.83 2.32
348 349 5.920193 ACTACATGCCACATAAGCAAATT 57.080 34.783 0.00 0.00 44.83 1.82
349 350 6.284891 ACTACATGCCACATAAGCAAATTT 57.715 33.333 0.00 0.00 44.83 1.82
350 351 6.700352 ACTACATGCCACATAAGCAAATTTT 58.300 32.000 0.00 0.00 44.83 1.82
351 352 7.160726 ACTACATGCCACATAAGCAAATTTTT 58.839 30.769 0.00 0.00 44.83 1.94
377 378 8.630054 TTTTGAAATGTGCTATGTTACTACCT 57.370 30.769 0.00 0.00 0.00 3.08
378 379 9.727859 TTTTGAAATGTGCTATGTTACTACCTA 57.272 29.630 0.00 0.00 0.00 3.08
379 380 9.727859 TTTGAAATGTGCTATGTTACTACCTAA 57.272 29.630 0.00 0.00 0.00 2.69
380 381 8.942338 TGAAATGTGCTATGTTACTACCTAAG 57.058 34.615 0.00 0.00 0.00 2.18
381 382 8.537016 TGAAATGTGCTATGTTACTACCTAAGT 58.463 33.333 0.00 0.00 42.62 2.24
382 383 9.379791 GAAATGTGCTATGTTACTACCTAAGTT 57.620 33.333 0.00 0.00 39.80 2.66
384 385 9.813446 AATGTGCTATGTTACTACCTAAGTTAC 57.187 33.333 0.00 0.00 39.80 2.50
385 386 8.585471 TGTGCTATGTTACTACCTAAGTTACT 57.415 34.615 0.00 0.00 38.33 2.24
386 387 8.680903 TGTGCTATGTTACTACCTAAGTTACTC 58.319 37.037 0.00 0.00 38.33 2.59
387 388 8.134261 GTGCTATGTTACTACCTAAGTTACTCC 58.866 40.741 0.00 0.00 38.33 3.85
388 389 7.286316 TGCTATGTTACTACCTAAGTTACTCCC 59.714 40.741 0.00 0.00 38.33 4.30
389 390 7.286316 GCTATGTTACTACCTAAGTTACTCCCA 59.714 40.741 0.00 0.00 38.33 4.37
390 391 6.840780 TGTTACTACCTAAGTTACTCCCAC 57.159 41.667 0.00 0.00 38.33 4.61
391 392 6.555711 TGTTACTACCTAAGTTACTCCCACT 58.444 40.000 0.00 0.00 38.33 4.00
392 393 7.698912 TGTTACTACCTAAGTTACTCCCACTA 58.301 38.462 0.00 0.00 38.33 2.74
393 394 8.339247 TGTTACTACCTAAGTTACTCCCACTAT 58.661 37.037 0.00 0.00 38.33 2.12
394 395 8.628280 GTTACTACCTAAGTTACTCCCACTATG 58.372 40.741 0.00 0.00 39.80 2.23
395 396 6.978261 ACTACCTAAGTTACTCCCACTATGA 58.022 40.000 0.00 0.00 33.35 2.15
396 397 6.832900 ACTACCTAAGTTACTCCCACTATGAC 59.167 42.308 0.00 0.00 33.35 3.06
397 398 5.840081 ACCTAAGTTACTCCCACTATGACT 58.160 41.667 0.00 0.00 0.00 3.41
398 399 6.978261 ACCTAAGTTACTCCCACTATGACTA 58.022 40.000 0.00 0.00 0.00 2.59
401 402 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
440 441 1.645034 CGACAGCAGGTGAGGTAATG 58.355 55.000 6.61 0.00 0.00 1.90
535 537 0.531657 TGCCAGCATGCACCATTAAC 59.468 50.000 21.98 0.58 36.04 2.01
546 548 5.674052 TGCACCATTAACTTGCCAAATAT 57.326 34.783 3.10 0.00 35.26 1.28
547 549 5.659463 TGCACCATTAACTTGCCAAATATC 58.341 37.500 3.10 0.00 35.26 1.63
551 564 7.201548 GCACCATTAACTTGCCAAATATCAAAG 60.202 37.037 0.00 0.00 0.00 2.77
560 573 9.686683 ACTTGCCAAATATCAAAGTATAAGACT 57.313 29.630 0.00 0.00 41.56 3.24
580 593 8.477419 AAGACTTTTTATTTTGACAGGATGGA 57.523 30.769 0.00 0.00 43.62 3.41
584 597 8.793592 ACTTTTTATTTTGACAGGATGGAGTAC 58.206 33.333 0.00 0.00 43.62 2.73
591 644 2.428890 GACAGGATGGAGTACTGACCTG 59.571 54.545 21.90 21.90 41.74 4.00
610 663 0.966370 GGTCAGTCCTGTCTACGCCT 60.966 60.000 0.00 0.00 0.00 5.52
623 676 2.040009 TACGCCTGCCCAATAGAGCC 62.040 60.000 0.00 0.00 0.00 4.70
635 688 2.932614 CAATAGAGCCGTTCAACTGAGG 59.067 50.000 0.00 0.00 0.00 3.86
646 702 4.439426 CGTTCAACTGAGGACTCTAGATGG 60.439 50.000 0.00 0.00 0.00 3.51
649 705 3.107402 ACTGAGGACTCTAGATGGCAA 57.893 47.619 0.00 0.00 0.00 4.52
650 706 3.445008 ACTGAGGACTCTAGATGGCAAA 58.555 45.455 0.00 0.00 0.00 3.68
651 707 4.036518 ACTGAGGACTCTAGATGGCAAAT 58.963 43.478 0.00 0.00 0.00 2.32
652 708 5.211973 ACTGAGGACTCTAGATGGCAAATA 58.788 41.667 0.00 0.00 0.00 1.40
653 709 5.069781 ACTGAGGACTCTAGATGGCAAATAC 59.930 44.000 0.00 0.00 0.00 1.89
654 710 5.211973 TGAGGACTCTAGATGGCAAATACT 58.788 41.667 0.00 0.00 0.00 2.12
655 711 5.303078 TGAGGACTCTAGATGGCAAATACTC 59.697 44.000 0.00 0.00 0.00 2.59
656 712 4.591072 AGGACTCTAGATGGCAAATACTCC 59.409 45.833 0.00 0.00 0.00 3.85
657 713 4.591072 GGACTCTAGATGGCAAATACTCCT 59.409 45.833 0.00 0.00 0.00 3.69
658 714 5.775701 GGACTCTAGATGGCAAATACTCCTA 59.224 44.000 0.00 0.00 0.00 2.94
659 715 6.294843 GGACTCTAGATGGCAAATACTCCTAC 60.295 46.154 0.00 0.00 0.00 3.18
670 726 6.217294 GCAAATACTCCTACTACTAGCCAAG 58.783 44.000 0.00 0.00 0.00 3.61
675 731 3.639094 CTCCTACTACTAGCCAAGCATGT 59.361 47.826 0.00 0.00 0.00 3.21
683 739 2.211250 AGCCAAGCATGTCTGATGTT 57.789 45.000 0.00 0.00 0.00 2.71
712 768 5.968988 GTGAACCACATGTTACAGTCTCTGT 60.969 44.000 0.00 7.54 40.01 3.41
720 776 7.224753 CACATGTTACAGTCTCTGTTTTAGTGT 59.775 37.037 7.70 5.22 42.59 3.55
726 782 4.572389 CAGTCTCTGTTTTAGTGTGCTTGT 59.428 41.667 0.00 0.00 0.00 3.16
794 862 4.275936 GCTATCCATTAATTCAACCGCACT 59.724 41.667 0.00 0.00 0.00 4.40
816 884 3.299503 GCCAACCATATTTGACCTGGAT 58.700 45.455 0.00 0.00 34.08 3.41
824 892 7.006509 ACCATATTTGACCTGGATAATTCCTG 58.993 38.462 0.00 0.00 43.07 3.86
830 898 7.392766 TTGACCTGGATAATTCCTGTATGAT 57.607 36.000 0.00 0.00 43.07 2.45
831 899 6.772605 TGACCTGGATAATTCCTGTATGATG 58.227 40.000 0.00 0.00 43.07 3.07
859 932 1.666888 CCATTGACTTGCAACCGAAGC 60.667 52.381 0.00 0.00 39.78 3.86
895 968 8.598041 GTTCCCATATATCTGTTCAGTTAGGAT 58.402 37.037 0.00 0.00 0.00 3.24
906 979 0.824759 AGTTAGGATGGACGGAGCAC 59.175 55.000 0.00 0.00 0.00 4.40
907 980 0.535335 GTTAGGATGGACGGAGCACA 59.465 55.000 0.00 0.00 0.00 4.57
908 981 1.139058 GTTAGGATGGACGGAGCACAT 59.861 52.381 0.00 0.00 0.00 3.21
909 982 1.040646 TAGGATGGACGGAGCACATC 58.959 55.000 0.00 0.00 41.29 3.06
910 983 4.445699 GATGGACGGAGCACATCC 57.554 61.111 0.00 0.00 45.64 3.51
952 1028 7.671398 ACCAAGAAATACCTCATCAAATTCAGT 59.329 33.333 0.00 0.00 0.00 3.41
1018 1094 1.132643 CAATGGAGAGAGCAAGCAAGC 59.867 52.381 0.00 0.00 0.00 4.01
1125 1201 1.228894 AGACACGCTCCTTCCTGGA 60.229 57.895 0.00 0.00 43.86 3.86
1147 1223 4.712476 ACAATCTCTAAATGCTAGCCAGG 58.288 43.478 13.29 0.00 0.00 4.45
1152 1228 3.898123 CTCTAAATGCTAGCCAGGTCCTA 59.102 47.826 13.29 0.00 0.00 2.94
1202 1284 5.105392 TGGGTTTCAACTTGCAATATGATCC 60.105 40.000 13.24 15.96 0.00 3.36
1208 1299 3.837355 ACTTGCAATATGATCCTTCCCC 58.163 45.455 0.00 0.00 0.00 4.81
1216 1307 3.771577 ATGATCCTTCCCCGTATTGTC 57.228 47.619 0.00 0.00 0.00 3.18
1246 1337 2.271800 CCTGGTTCACTAACTCATCGC 58.728 52.381 0.00 0.00 35.81 4.58
1258 1349 3.637184 TCATCGCCCCATGATGATG 57.363 52.632 0.00 2.33 45.37 3.07
1263 1354 1.420891 TCGCCCCATGATGATGATTCA 59.579 47.619 0.00 0.00 36.00 2.57
1332 1423 5.649265 TCATCAGCTACCCTATCAGAGAAT 58.351 41.667 0.00 0.00 0.00 2.40
1358 1449 3.817084 ACGCTACATATAACCGACAGCTA 59.183 43.478 0.00 0.00 0.00 3.32
1360 1451 5.645067 ACGCTACATATAACCGACAGCTATA 59.355 40.000 0.00 0.00 0.00 1.31
1361 1452 5.964168 CGCTACATATAACCGACAGCTATAC 59.036 44.000 0.00 0.00 0.00 1.47
1413 1522 4.418392 CCATTGCAGTGCTTCTTGATAAC 58.582 43.478 17.60 0.00 0.00 1.89
1419 1528 4.712763 CAGTGCTTCTTGATAACGGAAAC 58.287 43.478 0.00 0.00 0.00 2.78
1524 1633 2.654863 CGCCTAGGGTCCAATTCAATT 58.345 47.619 11.72 0.00 0.00 2.32
1660 1776 6.723298 TTCAGCAGAATCCTTTTGGTTTAA 57.277 33.333 0.00 0.00 41.38 1.52
1714 1830 4.058124 TCGTGAAGATGGAGACTTTGTTG 58.942 43.478 0.00 0.00 0.00 3.33
1821 1937 0.250467 TGTGGTCTGCTCCAGAAAGC 60.250 55.000 0.00 0.00 42.46 3.51
1873 1990 5.652014 CCTTATGGTATCTGCAAAAGGTCAA 59.348 40.000 0.00 0.00 0.00 3.18
1928 2045 8.811017 TCCATTAAGCACAAAATCAAGGAATTA 58.189 29.630 0.00 0.00 0.00 1.40
1980 2097 5.712152 ATTGTGAAGGAGACAATTCAACC 57.288 39.130 0.00 0.00 40.39 3.77
2029 2146 1.447314 GGCGTCTACAAGTTCCCCG 60.447 63.158 0.00 0.00 0.00 5.73
2042 2159 0.695924 TTCCCCGAGAATTCTTGGCA 59.304 50.000 29.94 18.46 44.60 4.92
2130 2247 3.949132 TGCTTACAATGTGACATGCCTA 58.051 40.909 0.00 0.00 0.00 3.93
2140 2257 5.833406 TGTGACATGCCTATTATGGTTTG 57.167 39.130 0.00 0.00 0.00 2.93
2199 2316 5.777802 TCAAATGGCAATCGTTTGTACATT 58.222 33.333 17.69 17.69 46.84 2.71
2223 2340 1.999024 GTTGCCACCAAACAACAACAG 59.001 47.619 0.00 0.00 44.39 3.16
3562 3679 6.259167 GGCCGTGTTAGTCATCATTGTTATTA 59.741 38.462 0.00 0.00 0.00 0.98
3628 3745 4.991056 TCAGAGCAAGAACTGTGTATGAAC 59.009 41.667 0.00 0.00 35.84 3.18
4285 4408 3.301642 GCGAAGAAATGCGGAGAAAATTG 59.698 43.478 0.00 0.00 0.00 2.32
4563 4693 3.118884 GCATGGAGGATTGATTGCACTTT 60.119 43.478 0.00 0.00 0.00 2.66
4574 4704 2.928801 TTGCACTTTCTCTACAGGCA 57.071 45.000 0.00 0.00 0.00 4.75
4682 4826 4.481072 ACTACGTTATCCCCTTATCTGCT 58.519 43.478 0.00 0.00 0.00 4.24
4766 4911 1.180029 GTTGGCATGATGGCTTGTCT 58.820 50.000 19.96 0.00 44.10 3.41
4767 4912 1.135199 GTTGGCATGATGGCTTGTCTG 60.135 52.381 19.96 0.00 44.10 3.51
4834 5004 9.623000 ATTGAGTTCAAGATATCATGTGAATGA 57.377 29.630 15.41 0.00 39.47 2.57
4869 5039 4.816392 TGTACTTACTGCACCACATACTG 58.184 43.478 0.00 0.00 0.00 2.74
4871 5041 1.660607 CTTACTGCACCACATACTGCG 59.339 52.381 0.00 0.00 36.08 5.18
4878 5048 1.464608 CACCACATACTGCGGTCTTTG 59.535 52.381 0.00 1.16 28.74 2.77
4967 5137 8.888716 ACACACGTTTGCAGAATATCAATTATA 58.111 29.630 0.61 0.00 0.00 0.98
5019 5192 7.112122 AGCATGGTTGTAGATTCTTGTGAATA 58.888 34.615 0.00 0.00 42.43 1.75
5020 5193 7.611467 AGCATGGTTGTAGATTCTTGTGAATAA 59.389 33.333 0.00 0.00 42.43 1.40
5021 5194 8.408601 GCATGGTTGTAGATTCTTGTGAATAAT 58.591 33.333 0.00 0.00 42.43 1.28
5024 5197 8.739039 TGGTTGTAGATTCTTGTGAATAATTGG 58.261 33.333 0.00 0.00 42.43 3.16
5025 5198 8.190784 GGTTGTAGATTCTTGTGAATAATTGGG 58.809 37.037 0.00 0.00 42.43 4.12
5026 5199 8.739972 GTTGTAGATTCTTGTGAATAATTGGGT 58.260 33.333 0.00 0.00 42.43 4.51
5027 5200 9.967451 TTGTAGATTCTTGTGAATAATTGGGTA 57.033 29.630 0.00 0.00 42.43 3.69
5028 5201 9.967451 TGTAGATTCTTGTGAATAATTGGGTAA 57.033 29.630 0.00 0.00 42.43 2.85
5072 5245 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
5074 5247 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
5075 5248 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
5076 5249 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
5077 5250 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
5078 5251 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
5079 5252 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
5080 5253 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
5089 5262 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
5090 5263 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
5091 5264 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
5092 5265 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
5178 5353 9.872684 ACAAAATTTAGATAGATCCATGGACAT 57.127 29.630 18.99 11.33 0.00 3.06
5312 7222 1.891150 CTGCTTTCAGCTTGGTTGGAT 59.109 47.619 0.00 0.00 42.97 3.41
5317 7227 5.163364 TGCTTTCAGCTTGGTTGGATTTTTA 60.163 36.000 0.00 0.00 42.97 1.52
5318 7228 5.934043 GCTTTCAGCTTGGTTGGATTTTTAT 59.066 36.000 0.00 0.00 38.45 1.40
5319 7229 6.427853 GCTTTCAGCTTGGTTGGATTTTTATT 59.572 34.615 0.00 0.00 38.45 1.40
5366 7279 7.841915 AACAGTTTTGTTCAACAAATAAGGG 57.158 32.000 16.41 7.60 46.17 3.95
5368 7281 5.236263 CAGTTTTGTTCAACAAATAAGGGGC 59.764 40.000 16.41 2.43 46.17 5.80
5388 7302 4.342665 GGGCCGGGATACAAATAATTTCAA 59.657 41.667 2.18 0.00 39.74 2.69
5413 7327 4.103469 AGTCCCTAACAACCACACATAACA 59.897 41.667 0.00 0.00 0.00 2.41
5443 7357 0.535335 AATGATGCTGCTGCCTTTGG 59.465 50.000 13.47 0.00 38.71 3.28
5444 7358 1.327690 ATGATGCTGCTGCCTTTGGG 61.328 55.000 13.47 0.00 38.71 4.12
5454 7368 2.731572 CTGCCTTTGGGAGATCATGTT 58.268 47.619 0.00 0.00 44.17 2.71
5501 7415 6.653526 TCATTCTTTTCTTTGCCTTGATGA 57.346 33.333 0.00 0.00 0.00 2.92
5523 7437 4.275810 ACTTGAATAATGGTGCTGCTGAT 58.724 39.130 0.00 0.00 0.00 2.90
5529 7443 2.677524 GGTGCTGCTGATGCCCAA 60.678 61.111 0.00 0.00 38.71 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.413767 CTCGGTGAGGCATTTCGTCG 61.414 60.000 0.00 0.00 32.48 5.12
65 66 2.802667 CGCTCGGTGAGGCATTTCG 61.803 63.158 0.00 0.00 0.00 3.46
95 96 0.671251 GAATTGAACGCAACCCCACA 59.329 50.000 0.00 0.00 36.72 4.17
96 97 0.671251 TGAATTGAACGCAACCCCAC 59.329 50.000 0.00 0.00 36.72 4.61
97 98 1.067821 GTTGAATTGAACGCAACCCCA 59.932 47.619 0.00 0.00 36.72 4.96
112 113 0.942410 GCGCACGTAGTCAGGTTGAA 60.942 55.000 0.30 0.00 41.61 2.69
114 115 2.380410 GGCGCACGTAGTCAGGTTG 61.380 63.158 10.83 0.00 41.61 3.77
115 116 2.048503 GGCGCACGTAGTCAGGTT 60.049 61.111 10.83 0.00 41.61 3.50
116 117 4.415332 CGGCGCACGTAGTCAGGT 62.415 66.667 10.83 0.00 41.61 4.00
119 120 4.351938 AAGCGGCGCACGTAGTCA 62.352 61.111 35.02 0.00 41.61 3.41
120 121 3.542742 GAAGCGGCGCACGTAGTC 61.543 66.667 35.02 16.14 41.61 2.59
122 123 3.545481 CTGAAGCGGCGCACGTAG 61.545 66.667 35.02 21.04 46.52 3.51
133 134 1.661341 CACTATGACCAGCCTGAAGC 58.339 55.000 0.00 0.00 44.25 3.86
134 135 1.134280 CCCACTATGACCAGCCTGAAG 60.134 57.143 0.00 0.00 0.00 3.02
135 136 0.911769 CCCACTATGACCAGCCTGAA 59.088 55.000 0.00 0.00 0.00 3.02
136 137 0.982852 CCCCACTATGACCAGCCTGA 60.983 60.000 0.00 0.00 0.00 3.86
137 138 0.982852 TCCCCACTATGACCAGCCTG 60.983 60.000 0.00 0.00 0.00 4.85
138 139 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
139 140 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
140 141 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
141 142 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
142 143 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
143 144 6.781507 AGTATAAGTTACTCCCCACTATGACC 59.218 42.308 0.00 0.00 0.00 4.02
144 145 7.836479 AGTATAAGTTACTCCCCACTATGAC 57.164 40.000 0.00 0.00 0.00 3.06
145 146 8.730948 ACTAGTATAAGTTACTCCCCACTATGA 58.269 37.037 0.00 0.00 0.00 2.15
146 147 8.794553 CACTAGTATAAGTTACTCCCCACTATG 58.205 40.741 0.00 0.00 0.00 2.23
147 148 8.509441 ACACTAGTATAAGTTACTCCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
148 149 7.876371 ACACTAGTATAAGTTACTCCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
149 150 6.739664 ACACTAGTATAAGTTACTCCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
150 151 6.604795 TGACACTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
151 152 6.734532 TGACACTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
152 153 7.659186 CATGACACTAGTATAAGTTACTCCCC 58.341 42.308 0.00 0.00 0.00 4.81
153 154 7.146648 GCATGACACTAGTATAAGTTACTCCC 58.853 42.308 0.00 0.00 0.00 4.30
154 155 7.713750 TGCATGACACTAGTATAAGTTACTCC 58.286 38.462 0.00 0.00 0.00 3.85
173 174 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
174 175 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
175 176 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
176 177 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
177 178 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
181 182 9.531158 AAAGGTAGTAACTTAGACTAGTGTCAT 57.469 33.333 0.00 0.00 45.20 3.06
182 183 8.930846 AAAGGTAGTAACTTAGACTAGTGTCA 57.069 34.615 0.00 0.00 45.20 3.58
189 190 9.471702 TGCACTATAAAGGTAGTAACTTAGACT 57.528 33.333 0.00 0.00 33.29 3.24
225 226 9.578576 AATGAAGCCACATATGACACTAATAAT 57.421 29.630 10.38 0.00 0.00 1.28
226 227 8.978874 AATGAAGCCACATATGACACTAATAA 57.021 30.769 10.38 0.00 0.00 1.40
227 228 8.978874 AAATGAAGCCACATATGACACTAATA 57.021 30.769 10.38 0.00 0.00 0.98
228 229 7.886629 AAATGAAGCCACATATGACACTAAT 57.113 32.000 10.38 0.00 0.00 1.73
229 230 8.800370 TTAAATGAAGCCACATATGACACTAA 57.200 30.769 10.38 0.00 0.00 2.24
230 231 8.839343 CATTAAATGAAGCCACATATGACACTA 58.161 33.333 10.38 0.00 0.00 2.74
231 232 7.201848 CCATTAAATGAAGCCACATATGACACT 60.202 37.037 10.38 0.00 0.00 3.55
232 233 6.919662 CCATTAAATGAAGCCACATATGACAC 59.080 38.462 10.38 0.00 0.00 3.67
233 234 6.461370 GCCATTAAATGAAGCCACATATGACA 60.461 38.462 10.38 0.52 0.00 3.58
234 235 5.922544 GCCATTAAATGAAGCCACATATGAC 59.077 40.000 10.38 0.00 0.00 3.06
235 236 5.834742 AGCCATTAAATGAAGCCACATATGA 59.165 36.000 10.38 0.00 0.00 2.15
236 237 6.092955 AGCCATTAAATGAAGCCACATATG 57.907 37.500 0.00 0.00 0.00 1.78
237 238 6.098695 ACAAGCCATTAAATGAAGCCACATAT 59.901 34.615 0.00 0.00 0.00 1.78
238 239 5.421693 ACAAGCCATTAAATGAAGCCACATA 59.578 36.000 0.00 0.00 0.00 2.29
239 240 4.223477 ACAAGCCATTAAATGAAGCCACAT 59.777 37.500 0.00 0.00 0.00 3.21
240 241 3.577848 ACAAGCCATTAAATGAAGCCACA 59.422 39.130 0.00 0.00 0.00 4.17
241 242 4.192429 ACAAGCCATTAAATGAAGCCAC 57.808 40.909 0.00 0.00 0.00 5.01
242 243 5.125417 GTCTACAAGCCATTAAATGAAGCCA 59.875 40.000 0.00 0.00 0.00 4.75
243 244 5.358160 AGTCTACAAGCCATTAAATGAAGCC 59.642 40.000 0.00 0.00 0.00 4.35
244 245 6.094048 TGAGTCTACAAGCCATTAAATGAAGC 59.906 38.462 0.00 0.00 0.00 3.86
245 246 7.615582 TGAGTCTACAAGCCATTAAATGAAG 57.384 36.000 0.00 0.00 0.00 3.02
246 247 8.049117 AGATGAGTCTACAAGCCATTAAATGAA 58.951 33.333 0.00 0.00 31.36 2.57
247 248 7.568349 AGATGAGTCTACAAGCCATTAAATGA 58.432 34.615 0.00 0.00 31.36 2.57
248 249 7.798596 AGATGAGTCTACAAGCCATTAAATG 57.201 36.000 0.00 0.00 31.36 2.32
250 251 9.547753 GATAAGATGAGTCTACAAGCCATTAAA 57.452 33.333 0.00 0.00 33.30 1.52
251 252 8.928448 AGATAAGATGAGTCTACAAGCCATTAA 58.072 33.333 0.00 0.00 33.30 1.40
252 253 8.484214 AGATAAGATGAGTCTACAAGCCATTA 57.516 34.615 0.00 0.00 33.30 1.90
253 254 7.372260 AGATAAGATGAGTCTACAAGCCATT 57.628 36.000 0.00 0.00 33.30 3.16
254 255 6.992664 AGATAAGATGAGTCTACAAGCCAT 57.007 37.500 0.00 0.00 33.30 4.40
255 256 6.407412 CCAAGATAAGATGAGTCTACAAGCCA 60.407 42.308 0.00 0.00 33.30 4.75
256 257 5.988561 CCAAGATAAGATGAGTCTACAAGCC 59.011 44.000 0.00 0.00 33.30 4.35
257 258 5.988561 CCCAAGATAAGATGAGTCTACAAGC 59.011 44.000 0.00 0.00 33.30 4.01
258 259 7.353414 TCCCAAGATAAGATGAGTCTACAAG 57.647 40.000 0.00 0.00 33.30 3.16
259 260 7.633772 GCTTCCCAAGATAAGATGAGTCTACAA 60.634 40.741 0.00 0.00 33.30 2.41
260 261 6.183360 GCTTCCCAAGATAAGATGAGTCTACA 60.183 42.308 0.00 0.00 33.30 2.74
261 262 6.220201 GCTTCCCAAGATAAGATGAGTCTAC 58.780 44.000 0.00 0.00 33.30 2.59
262 263 5.010112 CGCTTCCCAAGATAAGATGAGTCTA 59.990 44.000 0.00 0.00 33.30 2.59
263 264 4.202202 CGCTTCCCAAGATAAGATGAGTCT 60.202 45.833 0.00 0.00 35.82 3.24
264 265 4.054671 CGCTTCCCAAGATAAGATGAGTC 58.945 47.826 0.00 0.00 0.00 3.36
265 266 3.742640 GCGCTTCCCAAGATAAGATGAGT 60.743 47.826 0.00 0.00 0.00 3.41
266 267 2.805099 GCGCTTCCCAAGATAAGATGAG 59.195 50.000 0.00 0.00 0.00 2.90
267 268 2.435805 AGCGCTTCCCAAGATAAGATGA 59.564 45.455 2.64 0.00 0.00 2.92
268 269 2.843701 AGCGCTTCCCAAGATAAGATG 58.156 47.619 2.64 0.00 0.00 2.90
269 270 4.899352 ATAGCGCTTCCCAAGATAAGAT 57.101 40.909 18.68 0.00 0.00 2.40
270 271 6.360370 AATATAGCGCTTCCCAAGATAAGA 57.640 37.500 18.68 0.00 0.00 2.10
271 272 7.097192 TGTAATATAGCGCTTCCCAAGATAAG 58.903 38.462 18.68 0.00 0.00 1.73
272 273 6.999950 TGTAATATAGCGCTTCCCAAGATAA 58.000 36.000 18.68 0.00 0.00 1.75
273 274 6.210784 ACTGTAATATAGCGCTTCCCAAGATA 59.789 38.462 18.68 5.63 0.00 1.98
274 275 5.012148 ACTGTAATATAGCGCTTCCCAAGAT 59.988 40.000 18.68 2.95 0.00 2.40
275 276 4.344102 ACTGTAATATAGCGCTTCCCAAGA 59.656 41.667 18.68 0.00 0.00 3.02
276 277 4.632153 ACTGTAATATAGCGCTTCCCAAG 58.368 43.478 18.68 7.94 0.00 3.61
277 278 4.682778 ACTGTAATATAGCGCTTCCCAA 57.317 40.909 18.68 0.00 0.00 4.12
278 279 5.069383 TGTTACTGTAATATAGCGCTTCCCA 59.931 40.000 18.68 0.00 0.00 4.37
279 280 5.535333 TGTTACTGTAATATAGCGCTTCCC 58.465 41.667 18.68 0.00 0.00 3.97
280 281 8.928270 ATATGTTACTGTAATATAGCGCTTCC 57.072 34.615 18.68 0.00 0.00 3.46
309 310 8.610035 GGCATGTAGTTAATAAGAAGTGGTAAC 58.390 37.037 0.00 0.00 0.00 2.50
310 311 8.322828 TGGCATGTAGTTAATAAGAAGTGGTAA 58.677 33.333 0.00 0.00 0.00 2.85
311 312 7.767198 GTGGCATGTAGTTAATAAGAAGTGGTA 59.233 37.037 0.00 0.00 0.00 3.25
312 313 6.598064 GTGGCATGTAGTTAATAAGAAGTGGT 59.402 38.462 0.00 0.00 0.00 4.16
313 314 6.597672 TGTGGCATGTAGTTAATAAGAAGTGG 59.402 38.462 0.00 0.00 0.00 4.00
314 315 7.609760 TGTGGCATGTAGTTAATAAGAAGTG 57.390 36.000 0.00 0.00 0.00 3.16
315 316 9.899661 TTATGTGGCATGTAGTTAATAAGAAGT 57.100 29.630 0.00 0.00 0.00 3.01
317 318 8.836413 GCTTATGTGGCATGTAGTTAATAAGAA 58.164 33.333 14.01 0.00 31.15 2.52
318 319 7.990314 TGCTTATGTGGCATGTAGTTAATAAGA 59.010 33.333 14.01 3.47 34.56 2.10
319 320 8.153479 TGCTTATGTGGCATGTAGTTAATAAG 57.847 34.615 0.00 3.22 34.56 1.73
320 321 8.512966 TTGCTTATGTGGCATGTAGTTAATAA 57.487 30.769 0.00 0.00 39.54 1.40
321 322 8.512966 TTTGCTTATGTGGCATGTAGTTAATA 57.487 30.769 0.00 0.00 39.54 0.98
322 323 7.403312 TTTGCTTATGTGGCATGTAGTTAAT 57.597 32.000 0.00 0.00 39.54 1.40
323 324 6.825944 TTTGCTTATGTGGCATGTAGTTAA 57.174 33.333 0.00 0.00 39.54 2.01
324 325 7.403312 AATTTGCTTATGTGGCATGTAGTTA 57.597 32.000 0.00 0.00 39.54 2.24
325 326 5.920193 ATTTGCTTATGTGGCATGTAGTT 57.080 34.783 0.00 0.00 39.54 2.24
326 327 5.920193 AATTTGCTTATGTGGCATGTAGT 57.080 34.783 0.00 0.00 39.54 2.73
327 328 7.599630 AAAAATTTGCTTATGTGGCATGTAG 57.400 32.000 0.00 0.00 39.54 2.74
351 352 9.073475 AGGTAGTAACATAGCACATTTCAAAAA 57.927 29.630 0.00 0.00 0.00 1.94
352 353 8.630054 AGGTAGTAACATAGCACATTTCAAAA 57.370 30.769 0.00 0.00 0.00 2.44
353 354 9.727859 TTAGGTAGTAACATAGCACATTTCAAA 57.272 29.630 0.00 0.00 0.00 2.69
354 355 9.378551 CTTAGGTAGTAACATAGCACATTTCAA 57.621 33.333 0.00 0.00 0.00 2.69
355 356 8.537016 ACTTAGGTAGTAACATAGCACATTTCA 58.463 33.333 0.00 0.00 34.56 2.69
356 357 8.943909 ACTTAGGTAGTAACATAGCACATTTC 57.056 34.615 0.00 0.00 34.56 2.17
358 359 9.813446 GTAACTTAGGTAGTAACATAGCACATT 57.187 33.333 0.00 0.00 35.54 2.71
359 360 9.198475 AGTAACTTAGGTAGTAACATAGCACAT 57.802 33.333 0.00 0.00 35.54 3.21
360 361 8.585471 AGTAACTTAGGTAGTAACATAGCACA 57.415 34.615 0.00 0.00 35.54 4.57
361 362 8.134261 GGAGTAACTTAGGTAGTAACATAGCAC 58.866 40.741 0.00 0.00 35.54 4.40
362 363 7.286316 GGGAGTAACTTAGGTAGTAACATAGCA 59.714 40.741 0.00 0.00 35.54 3.49
363 364 7.286316 TGGGAGTAACTTAGGTAGTAACATAGC 59.714 40.741 0.00 0.00 35.54 2.97
364 365 8.628280 GTGGGAGTAACTTAGGTAGTAACATAG 58.372 40.741 0.00 0.00 35.54 2.23
365 366 8.339247 AGTGGGAGTAACTTAGGTAGTAACATA 58.661 37.037 0.00 0.00 35.54 2.29
366 367 7.187676 AGTGGGAGTAACTTAGGTAGTAACAT 58.812 38.462 0.00 0.00 35.54 2.71
367 368 6.555711 AGTGGGAGTAACTTAGGTAGTAACA 58.444 40.000 0.00 0.00 35.54 2.41
368 369 8.628280 CATAGTGGGAGTAACTTAGGTAGTAAC 58.372 40.741 0.00 0.00 35.54 2.50
369 370 8.560039 TCATAGTGGGAGTAACTTAGGTAGTAA 58.440 37.037 0.00 0.00 35.54 2.24
370 371 7.995488 GTCATAGTGGGAGTAACTTAGGTAGTA 59.005 40.741 0.00 0.00 35.54 1.82
371 372 6.832900 GTCATAGTGGGAGTAACTTAGGTAGT 59.167 42.308 0.00 0.00 39.32 2.73
372 373 7.061688 AGTCATAGTGGGAGTAACTTAGGTAG 58.938 42.308 0.00 0.00 0.00 3.18
373 374 6.978261 AGTCATAGTGGGAGTAACTTAGGTA 58.022 40.000 0.00 0.00 0.00 3.08
374 375 5.840081 AGTCATAGTGGGAGTAACTTAGGT 58.160 41.667 0.00 0.00 0.00 3.08
375 376 6.016108 GCTAGTCATAGTGGGAGTAACTTAGG 60.016 46.154 0.00 0.00 0.00 2.69
376 377 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
377 378 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
378 379 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
379 380 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
380 381 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
381 382 4.079385 TGAGGCTAGTCATAGTGGGAGTAA 60.079 45.833 0.00 0.00 0.00 2.24
382 383 3.462205 TGAGGCTAGTCATAGTGGGAGTA 59.538 47.826 0.00 0.00 0.00 2.59
383 384 2.245028 TGAGGCTAGTCATAGTGGGAGT 59.755 50.000 0.00 0.00 0.00 3.85
384 385 2.890311 CTGAGGCTAGTCATAGTGGGAG 59.110 54.545 0.00 0.00 0.00 4.30
385 386 2.245028 ACTGAGGCTAGTCATAGTGGGA 59.755 50.000 0.00 0.00 0.00 4.37
386 387 2.625790 GACTGAGGCTAGTCATAGTGGG 59.374 54.545 8.06 0.00 45.03 4.61
387 388 2.292016 CGACTGAGGCTAGTCATAGTGG 59.708 54.545 18.02 3.92 45.78 4.00
388 389 2.292016 CCGACTGAGGCTAGTCATAGTG 59.708 54.545 18.02 2.31 45.78 2.74
389 390 2.577700 CCGACTGAGGCTAGTCATAGT 58.422 52.381 18.02 0.00 45.78 2.12
401 402 1.994507 CTACCCTGACGCCGACTGAG 61.995 65.000 0.00 0.00 0.00 3.35
432 433 0.182775 AATGGGACCGGCATTACCTC 59.817 55.000 0.00 0.00 35.61 3.85
433 434 0.106719 CAATGGGACCGGCATTACCT 60.107 55.000 0.00 0.00 35.61 3.08
434 435 1.734388 GCAATGGGACCGGCATTACC 61.734 60.000 0.00 0.00 0.00 2.85
435 436 0.751643 AGCAATGGGACCGGCATTAC 60.752 55.000 0.00 0.00 0.00 1.89
436 437 0.033601 AAGCAATGGGACCGGCATTA 60.034 50.000 0.00 0.00 0.00 1.90
440 441 0.679960 ACTAAAGCAATGGGACCGGC 60.680 55.000 0.00 0.00 0.00 6.13
476 477 4.828939 AGAGTCAAAATCAAATGAGGTGCA 59.171 37.500 0.00 0.00 0.00 4.57
483 484 4.083110 ACGGCAGAGAGTCAAAATCAAATG 60.083 41.667 0.00 0.00 0.00 2.32
484 485 4.074970 ACGGCAGAGAGTCAAAATCAAAT 58.925 39.130 0.00 0.00 0.00 2.32
560 573 8.792633 CAGTACTCCATCCTGTCAAAATAAAAA 58.207 33.333 0.00 0.00 0.00 1.94
565 578 5.491982 GTCAGTACTCCATCCTGTCAAAAT 58.508 41.667 0.00 0.00 0.00 1.82
567 580 3.260884 GGTCAGTACTCCATCCTGTCAAA 59.739 47.826 0.00 0.00 0.00 2.69
568 581 2.832129 GGTCAGTACTCCATCCTGTCAA 59.168 50.000 0.00 0.00 0.00 3.18
569 582 2.043115 AGGTCAGTACTCCATCCTGTCA 59.957 50.000 3.61 0.00 0.00 3.58
570 583 2.428890 CAGGTCAGTACTCCATCCTGTC 59.571 54.545 17.16 0.00 38.01 3.51
571 584 2.461695 CAGGTCAGTACTCCATCCTGT 58.538 52.381 17.16 0.00 38.01 4.00
572 585 1.759445 CCAGGTCAGTACTCCATCCTG 59.241 57.143 17.90 17.90 41.17 3.86
573 586 1.362932 ACCAGGTCAGTACTCCATCCT 59.637 52.381 3.61 1.95 0.00 3.24
574 587 1.757699 GACCAGGTCAGTACTCCATCC 59.242 57.143 15.43 0.00 32.09 3.51
575 588 2.457598 TGACCAGGTCAGTACTCCATC 58.542 52.381 19.21 0.00 37.67 3.51
576 589 2.623418 TGACCAGGTCAGTACTCCAT 57.377 50.000 19.21 0.00 37.67 3.41
591 644 0.966370 AGGCGTAGACAGGACTGACC 60.966 60.000 6.29 0.00 39.87 4.02
610 663 0.326595 TTGAACGGCTCTATTGGGCA 59.673 50.000 0.41 0.00 0.00 5.36
623 676 4.439426 CCATCTAGAGTCCTCAGTTGAACG 60.439 50.000 0.00 0.00 0.00 3.95
635 688 5.799827 AGGAGTATTTGCCATCTAGAGTC 57.200 43.478 0.00 0.00 0.00 3.36
646 702 5.786264 TGGCTAGTAGTAGGAGTATTTGC 57.214 43.478 6.73 0.00 0.00 3.68
649 705 5.455872 TGCTTGGCTAGTAGTAGGAGTATT 58.544 41.667 6.73 0.00 0.00 1.89
650 706 5.063017 TGCTTGGCTAGTAGTAGGAGTAT 57.937 43.478 6.73 0.00 0.00 2.12
651 707 4.515028 TGCTTGGCTAGTAGTAGGAGTA 57.485 45.455 6.73 0.00 0.00 2.59
652 708 3.383698 TGCTTGGCTAGTAGTAGGAGT 57.616 47.619 6.73 0.00 0.00 3.85
653 709 3.639094 ACATGCTTGGCTAGTAGTAGGAG 59.361 47.826 6.73 0.00 0.00 3.69
654 710 3.637229 GACATGCTTGGCTAGTAGTAGGA 59.363 47.826 6.73 0.00 0.00 2.94
655 711 3.639094 AGACATGCTTGGCTAGTAGTAGG 59.361 47.826 6.08 0.00 40.39 3.18
656 712 4.339530 TCAGACATGCTTGGCTAGTAGTAG 59.660 45.833 7.79 0.00 40.10 2.57
657 713 4.278310 TCAGACATGCTTGGCTAGTAGTA 58.722 43.478 7.79 0.00 40.10 1.82
658 714 3.099905 TCAGACATGCTTGGCTAGTAGT 58.900 45.455 7.79 0.00 40.10 2.73
659 715 3.808466 TCAGACATGCTTGGCTAGTAG 57.192 47.619 7.79 0.00 40.10 2.57
670 726 3.069289 TCACAGTCAACATCAGACATGC 58.931 45.455 0.00 0.00 38.46 4.06
675 731 3.118445 TGTGGTTCACAGTCAACATCAGA 60.118 43.478 0.00 0.00 39.62 3.27
712 768 4.573201 GGTACACAGACAAGCACACTAAAA 59.427 41.667 0.00 0.00 0.00 1.52
720 776 2.605837 TTTCGGTACACAGACAAGCA 57.394 45.000 0.00 0.00 0.00 3.91
726 782 3.064207 GTTGAGCATTTCGGTACACAGA 58.936 45.455 0.00 0.00 0.00 3.41
790 858 2.417243 GGTCAAATATGGTTGGCAGTGC 60.417 50.000 6.55 6.55 34.70 4.40
794 862 2.042297 TCCAGGTCAAATATGGTTGGCA 59.958 45.455 0.00 0.00 34.70 4.92
816 884 6.126911 TGGTGTGCTACATCATACAGGAATTA 60.127 38.462 0.00 0.00 33.64 1.40
830 898 1.879380 GCAAGTCAATGGTGTGCTACA 59.121 47.619 0.00 0.00 32.43 2.74
831 899 1.879380 TGCAAGTCAATGGTGTGCTAC 59.121 47.619 0.00 0.00 36.18 3.58
906 979 5.379187 TGGTGACTAATGGATGATTGGATG 58.621 41.667 0.00 0.00 0.00 3.51
907 980 5.651612 TGGTGACTAATGGATGATTGGAT 57.348 39.130 0.00 0.00 0.00 3.41
908 981 5.191522 TCTTGGTGACTAATGGATGATTGGA 59.808 40.000 0.00 0.00 0.00 3.53
909 982 5.439721 TCTTGGTGACTAATGGATGATTGG 58.560 41.667 0.00 0.00 0.00 3.16
910 983 7.395190 TTTCTTGGTGACTAATGGATGATTG 57.605 36.000 0.00 0.00 0.00 2.67
911 984 9.125026 GTATTTCTTGGTGACTAATGGATGATT 57.875 33.333 0.00 0.00 0.00 2.57
912 985 7.721399 GGTATTTCTTGGTGACTAATGGATGAT 59.279 37.037 0.00 0.00 0.00 2.45
913 986 7.054124 GGTATTTCTTGGTGACTAATGGATGA 58.946 38.462 0.00 0.00 0.00 2.92
952 1028 3.371063 GTGCTCCGTCCGTCCTGA 61.371 66.667 0.00 0.00 0.00 3.86
977 1053 4.517285 TGATGAGGTATTTCTTGGTGAGC 58.483 43.478 0.00 0.00 0.00 4.26
1125 1201 4.164988 ACCTGGCTAGCATTTAGAGATTGT 59.835 41.667 18.24 0.00 0.00 2.71
1147 1223 4.642429 ACACCATTGTTTGAGAGTAGGAC 58.358 43.478 0.00 0.00 28.43 3.85
1152 1228 4.780815 TGAAGACACCATTGTTTGAGAGT 58.219 39.130 0.00 0.00 35.47 3.24
1198 1280 1.411612 ACGACAATACGGGGAAGGATC 59.588 52.381 0.00 0.00 37.61 3.36
1202 1284 2.160813 CCAAAACGACAATACGGGGAAG 59.839 50.000 0.00 0.00 37.61 3.46
1208 1299 1.533731 AGGTGCCAAAACGACAATACG 59.466 47.619 0.00 0.00 39.31 3.06
1216 1307 0.248866 GTGAACCAGGTGCCAAAACG 60.249 55.000 0.00 0.00 0.00 3.60
1246 1337 3.154710 CCAGTGAATCATCATCATGGGG 58.845 50.000 0.00 0.00 38.01 4.96
1332 1423 1.682323 TCGGTTATATGTAGCGTGCCA 59.318 47.619 9.91 0.00 37.71 4.92
1369 1460 5.003804 GGCAGAGATAGAAGTGGTCAAAAA 58.996 41.667 0.00 0.00 0.00 1.94
1413 1522 5.484715 TGGTCTCTTAATACAAGGTTTCCG 58.515 41.667 0.00 0.00 0.00 4.30
1419 1528 6.206634 TGTTTGCTTGGTCTCTTAATACAAGG 59.793 38.462 0.00 0.00 39.04 3.61
1524 1633 1.973515 AGGATCATGCTCTTGCCGATA 59.026 47.619 0.00 0.00 38.71 2.92
1660 1776 4.459337 GCTAGGAAAAGTACCAGCAAACAT 59.541 41.667 0.00 0.00 34.36 2.71
1714 1830 4.387559 TGTATGTGCGTCATTTAGTGTCAC 59.612 41.667 0.00 0.00 37.91 3.67
1873 1990 0.822532 GCAGGGCATATGCAGAAGCT 60.823 55.000 28.07 0.00 43.31 3.74
1928 2045 0.539051 CTCCCTCGAACAGCCAAGAT 59.461 55.000 0.00 0.00 0.00 2.40
1980 2097 1.241315 AAAACGCCACTTCCCGATGG 61.241 55.000 0.00 0.00 39.16 3.51
1987 2104 6.430451 CATCTATTGGATAAAACGCCACTTC 58.570 40.000 0.00 0.00 33.01 3.01
2029 2146 3.365767 GCAACAGAGTGCCAAGAATTCTC 60.366 47.826 8.78 0.00 38.66 2.87
2130 2247 3.524380 TCCGTAACTCCCCAAACCATAAT 59.476 43.478 0.00 0.00 0.00 1.28
2140 2257 0.683412 ACTGTGTTCCGTAACTCCCC 59.317 55.000 0.00 0.00 36.51 4.81
2223 2340 2.820197 AGCTCTGAAACCCGAATTTTCC 59.180 45.455 0.00 0.00 32.83 3.13
3533 3650 2.355197 TGATGACTAACACGGCCATTG 58.645 47.619 2.24 0.69 0.00 2.82
3534 3651 2.779755 TGATGACTAACACGGCCATT 57.220 45.000 2.24 0.00 0.00 3.16
3535 3652 2.945008 CAATGATGACTAACACGGCCAT 59.055 45.455 2.24 0.00 0.00 4.40
3536 3653 2.290008 ACAATGATGACTAACACGGCCA 60.290 45.455 2.24 0.00 0.00 5.36
3537 3654 2.356135 ACAATGATGACTAACACGGCC 58.644 47.619 0.00 0.00 0.00 6.13
3538 3655 5.734855 ATAACAATGATGACTAACACGGC 57.265 39.130 0.00 0.00 0.00 5.68
3539 3656 9.040939 TGATAATAACAATGATGACTAACACGG 57.959 33.333 0.00 0.00 0.00 4.94
3546 3663 9.857656 AGACCAATGATAATAACAATGATGACT 57.142 29.630 0.00 0.00 0.00 3.41
3547 3664 9.888878 CAGACCAATGATAATAACAATGATGAC 57.111 33.333 0.00 0.00 0.00 3.06
3548 3665 9.850198 TCAGACCAATGATAATAACAATGATGA 57.150 29.630 0.00 0.00 0.00 2.92
3562 3679 4.279169 CCACAAAACAGTCAGACCAATGAT 59.721 41.667 0.00 0.00 0.00 2.45
3628 3745 0.744281 AAAACCACAAGGCTTCCGTG 59.256 50.000 10.00 10.00 38.88 4.94
3944 4067 1.067516 GCTTCCAGCTCAGTTTTGCAA 59.932 47.619 0.00 0.00 38.45 4.08
4285 4408 7.646314 GGAAAGTAAGTAAAGTTCCCTTGTTC 58.354 38.462 0.00 0.00 33.10 3.18
4563 4693 3.948473 GAGACAGTACATGCCTGTAGAGA 59.052 47.826 16.21 0.00 43.00 3.10
4682 4826 7.882791 TGATAGCAAATTCAGTTCAGAACCTTA 59.117 33.333 9.85 0.00 0.00 2.69
4715 4860 3.762779 GTGAAGGCACAATATCACAAGC 58.237 45.455 0.00 0.00 44.51 4.01
4766 4911 6.929049 AGATTTACAGTTCTGATTGTCGAACA 59.071 34.615 6.83 0.00 41.40 3.18
4767 4912 7.352719 AGATTTACAGTTCTGATTGTCGAAC 57.647 36.000 6.83 0.00 39.74 3.95
4834 5004 9.804758 GTGCAGTAAGTACATCTACTAGAATTT 57.195 33.333 0.00 0.00 32.46 1.82
4869 5039 2.766970 TTAGTTTGTGCAAAGACCGC 57.233 45.000 0.00 0.00 0.00 5.68
4871 5041 9.908152 ATTAGTTAATTAGTTTGTGCAAAGACC 57.092 29.630 0.00 0.00 0.00 3.85
4878 5048 7.698130 CAGCAGGATTAGTTAATTAGTTTGTGC 59.302 37.037 0.00 0.00 0.00 4.57
4908 5078 0.038744 ACCATTGAGGACCCTGCTTG 59.961 55.000 0.00 0.00 41.22 4.01
5055 5228 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
5057 5230 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
5058 5231 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
5059 5232 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
5060 5233 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
5061 5234 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
5062 5235 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
5070 5243 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
5071 5244 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
5072 5245 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
5073 5246 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
5074 5247 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
5075 5248 0.675208 TTGTGGCCGTATGCATCGTT 60.675 50.000 0.19 0.00 43.89 3.85
5076 5249 0.463654 ATTGTGGCCGTATGCATCGT 60.464 50.000 0.19 0.00 43.89 3.73
5077 5250 0.662619 AATTGTGGCCGTATGCATCG 59.337 50.000 0.19 7.03 43.89 3.84
5078 5251 1.269206 CCAATTGTGGCCGTATGCATC 60.269 52.381 0.19 0.00 43.89 3.91
5079 5252 0.746063 CCAATTGTGGCCGTATGCAT 59.254 50.000 3.79 3.79 43.89 3.96
5080 5253 1.318886 CCCAATTGTGGCCGTATGCA 61.319 55.000 4.43 0.00 44.46 3.96
5081 5254 1.319614 ACCCAATTGTGGCCGTATGC 61.320 55.000 4.43 0.00 44.46 3.14
5082 5255 2.045561 TACCCAATTGTGGCCGTATG 57.954 50.000 4.43 0.00 44.46 2.39
5083 5256 2.371306 GTTACCCAATTGTGGCCGTAT 58.629 47.619 4.43 0.00 44.46 3.06
5084 5257 1.613785 GGTTACCCAATTGTGGCCGTA 60.614 52.381 4.43 0.00 44.46 4.02
5085 5258 0.896479 GGTTACCCAATTGTGGCCGT 60.896 55.000 4.43 0.00 44.46 5.68
5086 5259 0.896019 TGGTTACCCAATTGTGGCCG 60.896 55.000 4.43 0.00 44.46 6.13
5087 5260 0.606096 GTGGTTACCCAATTGTGGCC 59.394 55.000 4.43 0.00 44.15 5.36
5088 5261 1.333177 TGTGGTTACCCAATTGTGGC 58.667 50.000 4.43 0.00 44.15 5.01
5089 5262 3.161067 TCATGTGGTTACCCAATTGTGG 58.839 45.455 4.43 7.96 44.15 4.17
5090 5263 4.862902 TTCATGTGGTTACCCAATTGTG 57.137 40.909 4.43 0.00 44.15 3.33
5091 5264 4.898861 ACTTTCATGTGGTTACCCAATTGT 59.101 37.500 4.43 0.00 44.15 2.71
5092 5265 5.467035 ACTTTCATGTGGTTACCCAATTG 57.533 39.130 0.00 0.00 44.15 2.32
5127 5300 2.584835 ACAGACAGCCAAAATGCCTA 57.415 45.000 0.00 0.00 0.00 3.93
5130 5303 2.925563 GCATTACAGACAGCCAAAATGC 59.074 45.455 2.50 2.50 41.44 3.56
5257 7167 4.780021 ACACAGAAACCAGAGGATACATCT 59.220 41.667 0.00 0.00 41.41 2.90
5351 7262 1.203758 CCGGCCCCTTATTTGTTGAAC 59.796 52.381 0.00 0.00 0.00 3.18
5366 7279 5.300792 TCTTGAAATTATTTGTATCCCGGCC 59.699 40.000 0.00 0.00 0.00 6.13
5368 7281 7.255139 GGACTCTTGAAATTATTTGTATCCCGG 60.255 40.741 0.00 0.00 0.00 5.73
5388 7302 2.404559 TGTGTGGTTGTTAGGGACTCT 58.595 47.619 0.00 0.00 41.75 3.24
5413 7327 3.137913 AGCAGCATCATTAGATCCTGGTT 59.862 43.478 0.00 0.00 45.88 3.67
5443 7357 7.031975 GTCCAATTTTGAAGAACATGATCTCC 58.968 38.462 5.89 0.00 0.00 3.71
5444 7358 7.824672 AGTCCAATTTTGAAGAACATGATCTC 58.175 34.615 5.89 1.38 0.00 2.75
5454 7368 4.722526 TGAGGGAGTCCAATTTTGAAGA 57.277 40.909 12.30 0.00 34.83 2.87
5501 7415 3.689347 TCAGCAGCACCATTATTCAAGT 58.311 40.909 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.