Multiple sequence alignment - TraesCS6A01G077800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G077800 chr6A 100.000 7665 0 0 1 7665 47896563 47904227 0.000000e+00 14155.0
1 TraesCS6A01G077800 chr6A 82.906 117 18 2 53 168 58164219 58164104 3.780000e-18 104.0
2 TraesCS6A01G077800 chr6B 92.713 6738 252 103 393 7059 84123612 84130181 0.000000e+00 9502.0
3 TraesCS6A01G077800 chr6B 88.920 361 35 2 23 383 84123220 84123575 2.540000e-119 440.0
4 TraesCS6A01G077800 chrUn 94.120 4558 159 58 482 4976 143897689 143902200 0.000000e+00 6831.0
5 TraesCS6A01G077800 chrUn 95.877 1625 41 9 4986 6606 143902244 143903846 0.000000e+00 2606.0
6 TraesCS6A01G077800 chrUn 83.721 387 47 8 4 383 143897269 143897646 1.220000e-92 351.0
7 TraesCS6A01G077800 chrUn 83.226 310 16 9 6702 7011 143904149 143904422 1.280000e-62 252.0
8 TraesCS6A01G077800 chrUn 74.167 720 104 48 1834 2481 75223049 75223758 2.780000e-54 224.0
9 TraesCS6A01G077800 chrUn 87.500 96 7 2 393 488 224305541 224305631 1.050000e-18 106.0
10 TraesCS6A01G077800 chrUn 87.500 96 7 2 393 488 375623270 375623360 1.050000e-18 106.0
11 TraesCS6A01G077800 chr1A 92.972 4155 217 31 1619 5742 121745380 121741270 0.000000e+00 5986.0
12 TraesCS6A01G077800 chr1A 89.759 830 58 12 5759 6575 121741179 121740364 0.000000e+00 1037.0
13 TraesCS6A01G077800 chr1A 92.922 551 35 4 7117 7664 482734370 482733821 0.000000e+00 798.0
14 TraesCS6A01G077800 chr1A 84.375 288 21 9 1331 1617 121745784 121745520 2.120000e-65 261.0
15 TraesCS6A01G077800 chr1A 82.937 252 30 9 6824 7073 121740095 121739855 1.680000e-51 215.0
16 TraesCS6A01G077800 chr1A 81.048 248 25 16 1062 1289 121746034 121745789 2.200000e-40 178.0
17 TraesCS6A01G077800 chr1D 92.993 4153 203 32 1619 5742 113876202 113872109 0.000000e+00 5976.0
18 TraesCS6A01G077800 chr1D 88.530 837 62 16 5760 6577 113872013 113871192 0.000000e+00 983.0
19 TraesCS6A01G077800 chr1D 81.818 583 47 25 1062 1617 113876844 113876294 1.180000e-117 435.0
20 TraesCS6A01G077800 chr1D 83.333 252 30 8 6824 7073 113871033 113870792 1.000000e-53 222.0
21 TraesCS6A01G077800 chr1D 84.236 203 15 9 6627 6824 113871182 113870992 1.700000e-41 182.0
22 TraesCS6A01G077800 chr1B 93.720 3981 192 24 1795 5742 173977189 173973234 0.000000e+00 5914.0
23 TraesCS6A01G077800 chr1B 88.058 829 65 14 5772 6578 173973127 173972311 0.000000e+00 952.0
24 TraesCS6A01G077800 chr1B 81.142 578 54 32 1066 1617 173977930 173977382 5.530000e-111 412.0
25 TraesCS6A01G077800 chr1B 82.075 212 16 13 6625 6824 173972299 173972098 2.210000e-35 161.0
26 TraesCS6A01G077800 chr1B 79.365 252 30 15 6824 7073 173972137 173971906 2.860000e-34 158.0
27 TraesCS6A01G077800 chr1B 91.111 90 7 1 393 482 581100023 581100111 3.760000e-23 121.0
28 TraesCS6A01G077800 chr3D 90.086 1402 99 13 1725 3101 7924960 7923574 0.000000e+00 1783.0
29 TraesCS6A01G077800 chr3A 93.078 549 35 3 7117 7664 371041219 371040673 0.000000e+00 800.0
30 TraesCS6A01G077800 chr3A 92.727 550 38 2 7115 7664 371058624 371058077 0.000000e+00 793.0
31 TraesCS6A01G077800 chr2A 92.909 550 36 3 7117 7664 378650113 378650661 0.000000e+00 797.0
32 TraesCS6A01G077800 chr2A 92.909 550 35 4 7117 7664 378658259 378658806 0.000000e+00 797.0
33 TraesCS6A01G077800 chr2A 92.896 549 38 1 7117 7664 428992348 428992896 0.000000e+00 797.0
34 TraesCS6A01G077800 chr2A 92.896 549 37 2 7117 7664 585960269 585960816 0.000000e+00 797.0
35 TraesCS6A01G077800 chr2A 92.714 549 39 1 7117 7664 428984050 428984598 0.000000e+00 791.0
36 TraesCS6A01G077800 chr5A 92.701 548 38 2 7117 7663 341400782 341401328 0.000000e+00 789.0
37 TraesCS6A01G077800 chr5A 81.867 557 91 5 5903 6454 438472380 438471829 1.950000e-125 460.0
38 TraesCS6A01G077800 chr5A 87.368 95 8 1 393 487 575712889 575712799 1.050000e-18 106.0
39 TraesCS6A01G077800 chr5B 81.949 554 90 5 5903 6451 395922321 395921773 1.950000e-125 460.0
40 TraesCS6A01G077800 chr5B 82.114 123 18 4 50 172 480155996 480156114 1.360000e-17 102.0
41 TraesCS6A01G077800 chr5D 83.266 496 80 1 5903 6395 337302266 337301771 3.260000e-123 453.0
42 TraesCS6A01G077800 chr5D 77.986 427 89 4 5954 6379 539222309 539222731 5.900000e-66 263.0
43 TraesCS6A01G077800 chr3B 78.387 310 65 2 3527 3835 525608744 525609052 4.690000e-47 200.0
44 TraesCS6A01G077800 chr7A 88.542 96 6 2 393 488 48207327 48207237 2.260000e-20 111.0
45 TraesCS6A01G077800 chr7A 89.130 92 6 2 393 484 497864330 497864243 2.260000e-20 111.0
46 TraesCS6A01G077800 chr7A 87.500 96 7 2 393 488 48192272 48192182 1.050000e-18 106.0
47 TraesCS6A01G077800 chr4A 86.408 103 10 1 388 490 589651999 589651901 8.130000e-20 110.0
48 TraesCS6A01G077800 chr2D 88.889 90 6 1 393 482 465950388 465950303 2.920000e-19 108.0
49 TraesCS6A01G077800 chr2B 81.897 116 19 2 53 168 449677020 449676907 6.330000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G077800 chr6A 47896563 47904227 7664 False 14155.0 14155 100.0000 1 7665 1 chr6A.!!$F1 7664
1 TraesCS6A01G077800 chr6B 84123220 84130181 6961 False 4971.0 9502 90.8165 23 7059 2 chr6B.!!$F1 7036
2 TraesCS6A01G077800 chrUn 143897269 143904422 7153 False 2510.0 6831 89.2360 4 7011 4 chrUn.!!$F4 7007
3 TraesCS6A01G077800 chrUn 75223049 75223758 709 False 224.0 224 74.1670 1834 2481 1 chrUn.!!$F1 647
4 TraesCS6A01G077800 chr1A 121739855 121746034 6179 True 1535.4 5986 86.2182 1062 7073 5 chr1A.!!$R2 6011
5 TraesCS6A01G077800 chr1A 482733821 482734370 549 True 798.0 798 92.9220 7117 7664 1 chr1A.!!$R1 547
6 TraesCS6A01G077800 chr1D 113870792 113876844 6052 True 1559.6 5976 86.1820 1062 7073 5 chr1D.!!$R1 6011
7 TraesCS6A01G077800 chr1B 173971906 173977930 6024 True 1519.4 5914 84.8720 1066 7073 5 chr1B.!!$R1 6007
8 TraesCS6A01G077800 chr3D 7923574 7924960 1386 True 1783.0 1783 90.0860 1725 3101 1 chr3D.!!$R1 1376
9 TraesCS6A01G077800 chr3A 371040673 371041219 546 True 800.0 800 93.0780 7117 7664 1 chr3A.!!$R1 547
10 TraesCS6A01G077800 chr3A 371058077 371058624 547 True 793.0 793 92.7270 7115 7664 1 chr3A.!!$R2 549
11 TraesCS6A01G077800 chr2A 378650113 378650661 548 False 797.0 797 92.9090 7117 7664 1 chr2A.!!$F1 547
12 TraesCS6A01G077800 chr2A 378658259 378658806 547 False 797.0 797 92.9090 7117 7664 1 chr2A.!!$F2 547
13 TraesCS6A01G077800 chr2A 428992348 428992896 548 False 797.0 797 92.8960 7117 7664 1 chr2A.!!$F4 547
14 TraesCS6A01G077800 chr2A 585960269 585960816 547 False 797.0 797 92.8960 7117 7664 1 chr2A.!!$F5 547
15 TraesCS6A01G077800 chr2A 428984050 428984598 548 False 791.0 791 92.7140 7117 7664 1 chr2A.!!$F3 547
16 TraesCS6A01G077800 chr5A 341400782 341401328 546 False 789.0 789 92.7010 7117 7663 1 chr5A.!!$F1 546
17 TraesCS6A01G077800 chr5A 438471829 438472380 551 True 460.0 460 81.8670 5903 6454 1 chr5A.!!$R1 551
18 TraesCS6A01G077800 chr5B 395921773 395922321 548 True 460.0 460 81.9490 5903 6451 1 chr5B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 648 0.554792 CCCTCCCTCCTGATTTGCAT 59.445 55.000 0.00 0.0 0.00 3.96 F
1419 1541 0.179127 ATCGATCTGGTGTGCGTGAG 60.179 55.000 0.00 0.0 0.00 3.51 F
1521 1643 0.241749 TAGTCGCGTGTTGGATTCGT 59.758 50.000 5.77 0.0 0.00 3.85 F
1522 1644 0.241749 AGTCGCGTGTTGGATTCGTA 59.758 50.000 5.77 0.0 0.00 3.43 F
1640 1908 0.319641 GTTCCAGACCTCACCGACAC 60.320 60.000 0.00 0.0 0.00 3.67 F
1699 1968 0.398318 CCTGCCTTACCCTAGCATCC 59.602 60.000 0.00 0.0 35.64 3.51 F
2599 2961 1.225704 CCCTGATGCTTCCCCTGAC 59.774 63.158 0.00 0.0 0.00 3.51 F
4087 4455 0.387239 GCGTCTGCCATTTGACAACC 60.387 55.000 0.00 0.0 33.18 3.77 F
5075 5482 0.036732 TGCTTCAGCTAACCACCCTG 59.963 55.000 0.00 0.0 42.66 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1663 0.034863 TAACGGACAGGGGAAATGCC 60.035 55.000 0.00 0.00 0.00 4.40 R
2599 2961 2.028190 CTGCGGATAGAGTGGCGG 59.972 66.667 0.00 0.00 0.00 6.13 R
3319 3685 5.975693 GGTACCATTTTGGAAACTGATCA 57.024 39.130 7.15 0.00 40.96 2.92 R
4020 4388 0.839946 CAGGATGGTCCCTAGGGTTG 59.160 60.000 27.58 11.30 37.19 3.77 R
4067 4435 0.725784 GTTGTCAAATGGCAGACGCG 60.726 55.000 3.53 3.53 39.92 6.01 R
4082 4450 9.612066 AAGTTGACATTATTTTGAAATGGTTGT 57.388 25.926 0.00 1.22 38.41 3.32 R
5018 5421 2.872245 CTCAAGAACCAAAGCGAAGACA 59.128 45.455 0.00 0.00 0.00 3.41 R
6324 6837 0.738975 TGGACCAGACGATGACGATC 59.261 55.000 0.00 0.00 42.66 3.69 R
6798 7657 0.251121 ATTCCATGCCACGGTTGACA 60.251 50.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.671054 CACCATCTTTCCCACGCGT 60.671 57.895 5.58 5.58 0.00 6.01
148 149 2.846193 ACACCAACAACGCATCTAAGT 58.154 42.857 0.00 0.00 0.00 2.24
168 169 1.203994 TGCGCTCAACCCTTCTAGTAC 59.796 52.381 9.73 0.00 0.00 2.73
175 176 6.405508 CGCTCAACCCTTCTAGTACATTTAGA 60.406 42.308 0.00 0.00 0.00 2.10
183 184 7.065443 CCCTTCTAGTACATTTAGAAAAACCGG 59.935 40.741 0.00 0.00 36.87 5.28
211 215 3.181500 CGCCACATAAACTAGAAAAGGGC 60.181 47.826 0.00 0.00 0.00 5.19
255 259 5.645201 AGCCCTTCTCAAACTCCTTATTTT 58.355 37.500 0.00 0.00 0.00 1.82
257 262 7.414266 AGCCCTTCTCAAACTCCTTATTTTAT 58.586 34.615 0.00 0.00 0.00 1.40
280 285 0.963225 TTAAACGCCAAGGCCCTTTC 59.037 50.000 5.34 0.00 37.98 2.62
343 348 1.419922 CAATCGAACTTCGCACCGG 59.580 57.895 0.00 0.00 40.21 5.28
351 356 2.281831 TTCGCACCGGCCATTTCA 60.282 55.556 0.00 0.00 36.38 2.69
353 358 1.653094 TTCGCACCGGCCATTTCATC 61.653 55.000 0.00 0.00 36.38 2.92
383 388 6.423302 TGCACTTAATTTTCGCACATGATTTT 59.577 30.769 0.00 0.00 0.00 1.82
384 389 6.949877 GCACTTAATTTTCGCACATGATTTTC 59.050 34.615 0.00 0.00 0.00 2.29
385 390 7.159644 CACTTAATTTTCGCACATGATTTTCG 58.840 34.615 0.00 0.00 0.00 3.46
386 391 6.861055 ACTTAATTTTCGCACATGATTTTCGT 59.139 30.769 0.00 0.00 0.00 3.85
387 392 8.018520 ACTTAATTTTCGCACATGATTTTCGTA 58.981 29.630 0.00 0.00 0.00 3.43
388 393 8.903570 TTAATTTTCGCACATGATTTTCGTAT 57.096 26.923 0.00 0.00 0.00 3.06
389 394 9.989869 TTAATTTTCGCACATGATTTTCGTATA 57.010 25.926 0.00 0.00 0.00 1.47
405 437 9.804758 ATTTTCGTATATATTTTTGCGGGAAAA 57.195 25.926 3.11 3.11 35.12 2.29
409 441 8.460428 TCGTATATATTTTTGCGGGAAAACTTT 58.540 29.630 6.93 0.77 33.09 2.66
410 442 8.739461 CGTATATATTTTTGCGGGAAAACTTTC 58.261 33.333 6.93 0.00 33.09 2.62
415 447 1.161843 TGCGGGAAAACTTTCGATCC 58.838 50.000 0.00 0.00 38.06 3.36
433 465 7.619964 TCGATCCATTCATATTCAATCATGG 57.380 36.000 0.00 0.00 33.71 3.66
437 469 5.479027 TCCATTCATATTCAATCATGGCAGG 59.521 40.000 0.00 0.00 32.64 4.85
450 482 1.525077 GGCAGGACAACGAACACCA 60.525 57.895 0.00 0.00 0.00 4.17
455 487 2.031683 CAGGACAACGAACACCAGAAAC 59.968 50.000 0.00 0.00 0.00 2.78
456 488 2.011222 GGACAACGAACACCAGAAACA 58.989 47.619 0.00 0.00 0.00 2.83
462 494 6.622549 ACAACGAACACCAGAAACAAATAAA 58.377 32.000 0.00 0.00 0.00 1.40
479 511 9.801873 AACAAATAAAAATTACATCCAGATCCG 57.198 29.630 0.00 0.00 0.00 4.18
494 526 5.182380 TCCAGATCCGTAAAACAATGAAACC 59.818 40.000 0.00 0.00 0.00 3.27
498 530 3.318557 TCCGTAAAACAATGAAACCCACC 59.681 43.478 0.00 0.00 0.00 4.61
521 553 4.432712 GCATTTCAAGTATGCCGGAATTT 58.567 39.130 5.05 0.00 41.94 1.82
522 554 4.504097 GCATTTCAAGTATGCCGGAATTTC 59.496 41.667 5.05 0.00 41.94 2.17
523 555 5.649557 CATTTCAAGTATGCCGGAATTTCA 58.350 37.500 5.05 0.00 0.00 2.69
524 556 4.695217 TTCAAGTATGCCGGAATTTCAC 57.305 40.909 5.05 0.00 0.00 3.18
525 557 2.675844 TCAAGTATGCCGGAATTTCACG 59.324 45.455 5.05 0.10 0.00 4.35
526 558 2.396590 AGTATGCCGGAATTTCACGT 57.603 45.000 5.05 0.00 0.00 4.49
527 559 2.006888 AGTATGCCGGAATTTCACGTG 58.993 47.619 9.94 9.94 0.00 4.49
528 560 0.730265 TATGCCGGAATTTCACGTGC 59.270 50.000 11.67 0.00 0.00 5.34
529 561 1.933115 ATGCCGGAATTTCACGTGCC 61.933 55.000 11.67 4.75 0.00 5.01
530 562 2.332654 GCCGGAATTTCACGTGCCT 61.333 57.895 11.67 0.00 0.00 4.75
560 597 5.090083 GCTGTAGACTCTGAACTCTAAACG 58.910 45.833 0.00 0.00 0.00 3.60
572 609 3.798202 ACTCTAAACGGATTCATGCTCC 58.202 45.455 4.50 4.50 0.00 4.70
599 636 2.936032 GGTTGGTGAGCCCTCCCT 60.936 66.667 0.00 0.00 0.00 4.20
600 637 2.671682 GTTGGTGAGCCCTCCCTC 59.328 66.667 0.00 0.00 0.00 4.30
601 638 2.610859 TTGGTGAGCCCTCCCTCC 60.611 66.667 0.00 0.00 0.00 4.30
604 641 2.039624 GTGAGCCCTCCCTCCTGA 59.960 66.667 0.00 0.00 0.00 3.86
611 648 0.554792 CCCTCCCTCCTGATTTGCAT 59.445 55.000 0.00 0.00 0.00 3.96
621 659 5.009410 CCTCCTGATTTGCATAATGTTCTCC 59.991 44.000 0.00 0.00 0.00 3.71
985 1026 1.617947 CCACCCCACCTACTGAGCTC 61.618 65.000 6.82 6.82 0.00 4.09
1023 1064 1.614413 CGTATGTAAGAGGGGAGGAGC 59.386 57.143 0.00 0.00 0.00 4.70
1026 1067 2.444140 TAAGAGGGGAGGAGCGGC 60.444 66.667 0.00 0.00 0.00 6.53
1044 1111 3.834799 GGCATTGGAGCAGCAGCC 61.835 66.667 0.00 0.00 43.56 4.85
1057 1124 2.901813 CAGCCAGCTGAGAGAGGG 59.098 66.667 17.39 0.00 46.30 4.30
1058 1125 3.082701 AGCCAGCTGAGAGAGGGC 61.083 66.667 17.39 8.25 44.92 5.19
1059 1126 4.527583 GCCAGCTGAGAGAGGGCG 62.528 72.222 17.39 0.00 34.56 6.13
1060 1127 2.757508 CCAGCTGAGAGAGGGCGA 60.758 66.667 17.39 0.00 0.00 5.54
1061 1128 2.784356 CCAGCTGAGAGAGGGCGAG 61.784 68.421 17.39 0.00 0.00 5.03
1062 1129 1.752310 CAGCTGAGAGAGGGCGAGA 60.752 63.158 8.42 0.00 0.00 4.04
1100 1167 1.152673 GGATCTGGGAATGGTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
1107 1174 1.649271 GGGAATGGTGGCCATCTCCT 61.649 60.000 20.64 4.66 44.40 3.69
1322 1431 1.290732 CCCCTCTCTCTTCCTCTTCCT 59.709 57.143 0.00 0.00 0.00 3.36
1327 1436 1.153469 CTCTTCCTCTTCCTGCCGC 60.153 63.158 0.00 0.00 0.00 6.53
1328 1437 2.510238 CTTCCTCTTCCTGCCGCG 60.510 66.667 0.00 0.00 0.00 6.46
1352 1462 2.346099 AATTTGTCGGTGCCATTTCG 57.654 45.000 0.00 0.00 0.00 3.46
1370 1480 2.654912 GGTTCGTCACGGCTCGTTG 61.655 63.158 0.00 0.00 38.32 4.10
1374 1484 1.443702 CGTCACGGCTCGTTGATGA 60.444 57.895 0.00 0.00 38.32 2.92
1415 1537 1.141665 TGGATCGATCTGGTGTGCG 59.858 57.895 23.96 0.00 0.00 5.34
1416 1538 1.141881 GGATCGATCTGGTGTGCGT 59.858 57.895 23.96 0.00 0.00 5.24
1417 1539 1.148157 GGATCGATCTGGTGTGCGTG 61.148 60.000 23.96 0.00 0.00 5.34
1418 1540 0.179137 GATCGATCTGGTGTGCGTGA 60.179 55.000 18.29 0.00 0.00 4.35
1419 1541 0.179127 ATCGATCTGGTGTGCGTGAG 60.179 55.000 0.00 0.00 0.00 3.51
1420 1542 1.807165 CGATCTGGTGTGCGTGAGG 60.807 63.158 0.00 0.00 0.00 3.86
1421 1543 2.046892 ATCTGGTGTGCGTGAGGC 60.047 61.111 0.00 0.00 43.96 4.70
1446 1568 1.090052 GTGGATCTAGGTTGCGGTGC 61.090 60.000 0.00 0.00 0.00 5.01
1474 1596 1.819632 CAGCTCGAATTTCCCCCGG 60.820 63.158 0.00 0.00 0.00 5.73
1479 1601 0.252761 TCGAATTTCCCCCGGTTACC 59.747 55.000 0.00 0.00 0.00 2.85
1508 1630 4.509737 GGGGGTGCTCGTAGTCGC 62.510 72.222 0.00 0.00 36.96 5.19
1521 1643 0.241749 TAGTCGCGTGTTGGATTCGT 59.758 50.000 5.77 0.00 0.00 3.85
1522 1644 0.241749 AGTCGCGTGTTGGATTCGTA 59.758 50.000 5.77 0.00 0.00 3.43
1523 1645 0.638746 GTCGCGTGTTGGATTCGTAG 59.361 55.000 5.77 0.00 0.00 3.51
1524 1646 0.522626 TCGCGTGTTGGATTCGTAGA 59.477 50.000 5.77 0.00 0.00 2.59
1525 1647 1.133598 TCGCGTGTTGGATTCGTAGAT 59.866 47.619 5.77 0.00 35.04 1.98
1526 1648 2.355444 TCGCGTGTTGGATTCGTAGATA 59.645 45.455 5.77 0.00 35.04 1.98
1527 1649 2.466571 CGCGTGTTGGATTCGTAGATAC 59.533 50.000 0.00 0.00 35.04 2.24
1528 1650 3.703420 GCGTGTTGGATTCGTAGATACT 58.297 45.455 0.00 0.00 35.04 2.12
1529 1651 4.553351 CGCGTGTTGGATTCGTAGATACTA 60.553 45.833 0.00 0.00 35.04 1.82
1530 1652 4.910456 GCGTGTTGGATTCGTAGATACTAG 59.090 45.833 0.00 0.00 35.04 2.57
1531 1653 5.277683 GCGTGTTGGATTCGTAGATACTAGA 60.278 44.000 0.00 0.00 35.04 2.43
1541 1663 9.428363 GATTCGTAGATACTAGATAGATTTGCG 57.572 37.037 0.00 0.00 35.04 4.85
1563 1685 2.758423 GCATTTCCCCTGTCCGTTAATT 59.242 45.455 0.00 0.00 0.00 1.40
1567 1694 1.979308 TCCCCTGTCCGTTAATTGTGA 59.021 47.619 0.00 0.00 0.00 3.58
1579 1706 0.887933 AATTGTGACCCCGTTCATGC 59.112 50.000 0.00 0.00 0.00 4.06
1617 1747 2.165030 GTGGAGCAATTGGGAGATGTTG 59.835 50.000 7.72 0.00 0.00 3.33
1640 1908 0.319641 GTTCCAGACCTCACCGACAC 60.320 60.000 0.00 0.00 0.00 3.67
1642 1910 1.179174 TCCAGACCTCACCGACACAG 61.179 60.000 0.00 0.00 0.00 3.66
1643 1911 1.179174 CCAGACCTCACCGACACAGA 61.179 60.000 0.00 0.00 0.00 3.41
1644 1912 0.891373 CAGACCTCACCGACACAGAT 59.109 55.000 0.00 0.00 0.00 2.90
1645 1913 2.092323 CAGACCTCACCGACACAGATA 58.908 52.381 0.00 0.00 0.00 1.98
1646 1914 2.690497 CAGACCTCACCGACACAGATAT 59.310 50.000 0.00 0.00 0.00 1.63
1647 1915 3.883489 CAGACCTCACCGACACAGATATA 59.117 47.826 0.00 0.00 0.00 0.86
1648 1916 4.520874 CAGACCTCACCGACACAGATATAT 59.479 45.833 0.00 0.00 0.00 0.86
1654 1922 4.407621 TCACCGACACAGATATATTTGGGT 59.592 41.667 10.77 10.77 32.62 4.51
1665 1933 7.448469 ACAGATATATTTGGGTCCATGTTTAGC 59.552 37.037 8.04 0.00 0.00 3.09
1669 1937 5.760484 ATTTGGGTCCATGTTTAGCATTT 57.240 34.783 0.00 0.00 35.19 2.32
1683 1951 2.366533 AGCATTTCACTGATGAGCCTG 58.633 47.619 0.00 0.00 35.83 4.85
1694 1963 1.346068 GATGAGCCTGCCTTACCCTAG 59.654 57.143 0.00 0.00 0.00 3.02
1699 1968 0.398318 CCTGCCTTACCCTAGCATCC 59.602 60.000 0.00 0.00 35.64 3.51
1743 2012 3.002042 CGCTTGGATCATAGTTTCAGCTG 59.998 47.826 7.63 7.63 0.00 4.24
1836 2116 2.353406 CCTCTGTGATTTCGTACGGGTT 60.353 50.000 16.52 0.00 0.00 4.11
1858 2139 3.141398 TGTGCTGACCTGTTTTCATCTC 58.859 45.455 0.00 0.00 0.00 2.75
2153 2467 5.333416 GCTTTATACTATGAGCCAAAGTCGC 60.333 44.000 0.00 0.00 0.00 5.19
2166 2489 1.466856 AAGTCGCGGTATACTGGTCA 58.533 50.000 13.59 0.00 0.00 4.02
2257 2592 4.213906 TCATGCTAATTGGTGTATGCATCG 59.786 41.667 0.19 0.00 38.82 3.84
2261 2596 3.698029 AATTGGTGTATGCATCGCTTC 57.302 42.857 0.19 0.00 0.00 3.86
2518 2880 4.644234 TGATGAAAGCTGAGTTTGTTTCCA 59.356 37.500 0.00 0.00 0.00 3.53
2599 2961 1.225704 CCCTGATGCTTCCCCTGAC 59.774 63.158 0.00 0.00 0.00 3.51
2647 3009 3.170791 AGCTATGTCGATCCAAGTGTG 57.829 47.619 0.00 0.00 0.00 3.82
2954 3318 9.950680 ATGCAAATGTATAAATAACCTTTCTCG 57.049 29.630 0.00 0.00 0.00 4.04
3062 3426 4.819769 AGTGTTGTTGCAGTTTGATGTTT 58.180 34.783 0.00 0.00 0.00 2.83
3762 4130 1.354705 AGGGCCCCAGAGTTTTACTTC 59.645 52.381 21.43 0.00 0.00 3.01
4020 4388 4.660938 ACCGCTTGGCCTGGGAAC 62.661 66.667 3.32 0.00 35.53 3.62
4067 4435 9.612620 CATGATTCAGGTACTTTTTACTTCAAC 57.387 33.333 0.00 0.00 34.60 3.18
4082 4450 0.882484 TCAACGCGTCTGCCATTTGA 60.882 50.000 14.44 7.12 38.08 2.69
4083 4451 0.725784 CAACGCGTCTGCCATTTGAC 60.726 55.000 14.44 0.00 38.08 3.18
4084 4452 1.163420 AACGCGTCTGCCATTTGACA 61.163 50.000 14.44 0.00 38.08 3.58
4085 4453 1.163420 ACGCGTCTGCCATTTGACAA 61.163 50.000 5.58 0.00 38.08 3.18
4086 4454 0.725784 CGCGTCTGCCATTTGACAAC 60.726 55.000 0.00 0.00 38.08 3.32
4087 4455 0.387239 GCGTCTGCCATTTGACAACC 60.387 55.000 0.00 0.00 33.18 3.77
4088 4456 0.950836 CGTCTGCCATTTGACAACCA 59.049 50.000 0.00 0.00 33.18 3.67
4089 4457 1.541147 CGTCTGCCATTTGACAACCAT 59.459 47.619 0.00 0.00 33.18 3.55
4090 4458 2.030007 CGTCTGCCATTTGACAACCATT 60.030 45.455 0.00 0.00 33.18 3.16
4091 4459 3.552684 CGTCTGCCATTTGACAACCATTT 60.553 43.478 0.00 0.00 33.18 2.32
4092 4460 3.989817 GTCTGCCATTTGACAACCATTTC 59.010 43.478 0.00 0.00 33.75 2.17
4331 4699 8.530311 TGTGTACATTGCATTGGATTTTATCTT 58.470 29.630 12.87 0.00 0.00 2.40
4976 5344 3.063510 TCTTGGCATCTGAAGACAAGG 57.936 47.619 23.77 9.33 39.10 3.61
4977 5345 2.373169 TCTTGGCATCTGAAGACAAGGT 59.627 45.455 23.77 0.00 39.10 3.50
4980 5348 0.807496 GCATCTGAAGACAAGGTGCC 59.193 55.000 0.00 0.00 0.00 5.01
5072 5475 1.807142 GACTTGCTTCAGCTAACCACC 59.193 52.381 0.00 0.00 42.66 4.61
5075 5482 0.036732 TGCTTCAGCTAACCACCCTG 59.963 55.000 0.00 0.00 42.66 4.45
5349 5763 1.925185 GCGGAGATACGAAACTGGAAC 59.075 52.381 0.00 0.00 35.47 3.62
5358 5772 6.814146 AGATACGAAACTGGAACTGAGATTTC 59.186 38.462 0.00 0.00 0.00 2.17
5370 5784 7.872483 TGGAACTGAGATTTCCTTTTATTTTGC 59.128 33.333 3.86 0.00 42.79 3.68
5468 5882 1.027357 CAATCTACTGCATGCCACCC 58.973 55.000 16.68 0.00 0.00 4.61
5528 5942 6.208007 TGTCTGACCGTCTTAATCAAGTTCTA 59.792 38.462 5.17 0.00 33.20 2.10
5537 5951 5.963334 TCTTAATCAAGTTCTACGATGGGCG 60.963 44.000 0.00 0.00 38.31 6.13
5645 6059 5.861787 GGCTTACATCAACACCATTGTTTAC 59.138 40.000 0.00 0.00 43.89 2.01
5786 6278 7.011857 CAGAGCTATGTTCCTCTTGTTAAATCC 59.988 40.741 0.00 0.00 36.33 3.01
6000 6509 1.819632 GGTCATCGGTGGCACATCC 60.820 63.158 20.82 7.93 44.52 3.51
6396 6909 2.618053 GTGAAGATCGACCCGTTCATT 58.382 47.619 0.00 0.00 31.84 2.57
6455 6968 1.203928 GTCAACTGCTGATCGGATCG 58.796 55.000 12.99 8.99 36.14 3.69
6468 6981 4.873129 GATCGCCGGCGCTCAAGA 62.873 66.667 39.20 25.75 39.59 3.02
6469 6982 4.880537 ATCGCCGGCGCTCAAGAG 62.881 66.667 42.78 16.04 39.59 2.85
6563 7093 9.901172 ACGGAAGGAGTTTATCTAAATTATTGT 57.099 29.630 0.00 0.00 0.00 2.71
6579 7118 7.949690 AATTATTGTCCCTTTGTTAGTACCC 57.050 36.000 0.00 0.00 0.00 3.69
6581 7120 5.594199 ATTGTCCCTTTGTTAGTACCCTT 57.406 39.130 0.00 0.00 0.00 3.95
6582 7121 4.360951 TGTCCCTTTGTTAGTACCCTTG 57.639 45.455 0.00 0.00 0.00 3.61
6583 7122 3.717913 TGTCCCTTTGTTAGTACCCTTGT 59.282 43.478 0.00 0.00 0.00 3.16
6617 7159 2.492019 GGAACCACAAACAGTCAAGC 57.508 50.000 0.00 0.00 0.00 4.01
6618 7160 1.067060 GGAACCACAAACAGTCAAGCC 59.933 52.381 0.00 0.00 0.00 4.35
6619 7161 2.024414 GAACCACAAACAGTCAAGCCT 58.976 47.619 0.00 0.00 0.00 4.58
6620 7162 1.680338 ACCACAAACAGTCAAGCCTC 58.320 50.000 0.00 0.00 0.00 4.70
6621 7163 0.954452 CCACAAACAGTCAAGCCTCC 59.046 55.000 0.00 0.00 0.00 4.30
6622 7164 1.679139 CACAAACAGTCAAGCCTCCA 58.321 50.000 0.00 0.00 0.00 3.86
6623 7165 1.334869 CACAAACAGTCAAGCCTCCAC 59.665 52.381 0.00 0.00 0.00 4.02
6781 7640 2.896243 CAGCTGTTGCATCAACTCTC 57.104 50.000 5.25 1.34 43.85 3.20
6782 7641 2.424557 CAGCTGTTGCATCAACTCTCT 58.575 47.619 5.25 3.24 43.85 3.10
6783 7642 2.415857 CAGCTGTTGCATCAACTCTCTC 59.584 50.000 5.25 0.00 43.85 3.20
6784 7643 2.302445 AGCTGTTGCATCAACTCTCTCT 59.698 45.455 10.52 0.00 43.85 3.10
6785 7644 3.072944 GCTGTTGCATCAACTCTCTCTT 58.927 45.455 10.52 0.00 43.85 2.85
6786 7645 3.124976 GCTGTTGCATCAACTCTCTCTTC 59.875 47.826 10.52 0.00 43.85 2.87
6787 7646 4.567971 CTGTTGCATCAACTCTCTCTTCT 58.432 43.478 10.52 0.00 43.85 2.85
6788 7647 4.313282 TGTTGCATCAACTCTCTCTTCTG 58.687 43.478 10.52 0.00 43.85 3.02
6789 7648 2.969990 TGCATCAACTCTCTCTTCTGC 58.030 47.619 0.00 0.00 0.00 4.26
6790 7649 2.301009 TGCATCAACTCTCTCTTCTGCA 59.699 45.455 0.00 0.00 36.15 4.41
6791 7650 3.244318 TGCATCAACTCTCTCTTCTGCAA 60.244 43.478 0.00 0.00 35.63 4.08
6792 7651 3.940221 GCATCAACTCTCTCTTCTGCAAT 59.060 43.478 0.00 0.00 0.00 3.56
6793 7652 4.395542 GCATCAACTCTCTCTTCTGCAATT 59.604 41.667 0.00 0.00 0.00 2.32
6794 7653 5.447548 GCATCAACTCTCTCTTCTGCAATTC 60.448 44.000 0.00 0.00 0.00 2.17
6795 7654 5.480642 TCAACTCTCTCTTCTGCAATTCT 57.519 39.130 0.00 0.00 0.00 2.40
6796 7655 6.596309 TCAACTCTCTCTTCTGCAATTCTA 57.404 37.500 0.00 0.00 0.00 2.10
6797 7656 6.629128 TCAACTCTCTCTTCTGCAATTCTAG 58.371 40.000 0.00 0.00 0.00 2.43
6798 7657 6.210385 TCAACTCTCTCTTCTGCAATTCTAGT 59.790 38.462 0.00 0.00 0.00 2.57
6799 7658 5.964758 ACTCTCTCTTCTGCAATTCTAGTG 58.035 41.667 0.00 0.00 0.00 2.74
6800 7659 5.480073 ACTCTCTCTTCTGCAATTCTAGTGT 59.520 40.000 0.00 0.00 0.00 3.55
6801 7660 5.960113 TCTCTCTTCTGCAATTCTAGTGTC 58.040 41.667 0.00 0.00 0.00 3.67
6802 7661 5.478332 TCTCTCTTCTGCAATTCTAGTGTCA 59.522 40.000 0.00 0.00 0.00 3.58
6803 7662 6.015095 TCTCTCTTCTGCAATTCTAGTGTCAA 60.015 38.462 0.00 0.00 0.00 3.18
6804 7663 5.928839 TCTCTTCTGCAATTCTAGTGTCAAC 59.071 40.000 0.00 0.00 0.00 3.18
6805 7664 4.997395 TCTTCTGCAATTCTAGTGTCAACC 59.003 41.667 0.00 0.00 0.00 3.77
6806 7665 3.325870 TCTGCAATTCTAGTGTCAACCG 58.674 45.455 0.00 0.00 0.00 4.44
6807 7666 3.067106 CTGCAATTCTAGTGTCAACCGT 58.933 45.455 0.00 0.00 0.00 4.83
6808 7667 2.805671 TGCAATTCTAGTGTCAACCGTG 59.194 45.455 0.00 0.00 0.00 4.94
6809 7668 2.159627 GCAATTCTAGTGTCAACCGTGG 59.840 50.000 0.00 0.00 0.00 4.94
6810 7669 2.094762 ATTCTAGTGTCAACCGTGGC 57.905 50.000 0.00 0.00 0.00 5.01
6811 7670 0.753867 TTCTAGTGTCAACCGTGGCA 59.246 50.000 0.00 0.00 36.89 4.92
6812 7671 0.973632 TCTAGTGTCAACCGTGGCAT 59.026 50.000 0.00 0.00 42.51 4.40
6813 7672 1.078709 CTAGTGTCAACCGTGGCATG 58.921 55.000 0.00 0.00 42.51 4.06
6814 7673 0.321210 TAGTGTCAACCGTGGCATGG 60.321 55.000 24.09 24.09 42.51 3.66
6815 7674 1.599518 GTGTCAACCGTGGCATGGA 60.600 57.895 31.76 7.17 42.51 3.41
6816 7675 1.149401 TGTCAACCGTGGCATGGAA 59.851 52.632 31.76 13.69 33.34 3.53
6817 7676 0.251121 TGTCAACCGTGGCATGGAAT 60.251 50.000 31.76 16.84 33.34 3.01
6818 7677 1.003696 TGTCAACCGTGGCATGGAATA 59.996 47.619 31.76 12.98 33.34 1.75
6819 7678 2.297701 GTCAACCGTGGCATGGAATAT 58.702 47.619 31.76 11.88 0.00 1.28
6820 7679 2.033299 GTCAACCGTGGCATGGAATATG 59.967 50.000 31.76 21.60 0.00 1.78
6821 7680 1.337703 CAACCGTGGCATGGAATATGG 59.662 52.381 31.76 3.23 0.00 2.74
6822 7681 0.843309 ACCGTGGCATGGAATATGGA 59.157 50.000 31.76 0.00 0.00 3.41
6823 7682 1.425066 ACCGTGGCATGGAATATGGAT 59.575 47.619 31.76 3.94 0.00 3.41
6824 7683 2.086869 CCGTGGCATGGAATATGGATC 58.913 52.381 21.47 0.00 0.00 3.36
6825 7684 2.290514 CCGTGGCATGGAATATGGATCT 60.291 50.000 21.47 0.00 0.00 2.75
6865 7724 4.365514 ACCGTGCCATGGAATATGAATA 57.634 40.909 18.40 0.00 0.00 1.75
6905 7774 5.122869 TGCTAGCTTGATTGTGATTGTTCTC 59.877 40.000 17.23 0.00 0.00 2.87
6908 7777 4.082895 AGCTTGATTGTGATTGTTCTCTGC 60.083 41.667 0.00 0.00 0.00 4.26
6912 7781 3.878086 TTGTGATTGTTCTCTGCGTTC 57.122 42.857 0.00 0.00 0.00 3.95
6914 7783 2.058798 GTGATTGTTCTCTGCGTTCGA 58.941 47.619 0.00 0.00 0.00 3.71
6918 7787 4.326278 TGATTGTTCTCTGCGTTCGATAAC 59.674 41.667 0.00 0.00 0.00 1.89
6989 7860 4.761739 TCAATTAAACTGCTGCTGTTAGCT 59.238 37.500 22.43 11.67 42.97 3.32
7020 7894 1.266718 GCTTGAAACACTGCCATTCGA 59.733 47.619 0.00 0.00 0.00 3.71
7060 7934 2.108976 GATCGAGGCCCATTCGCA 59.891 61.111 7.96 0.00 37.94 5.10
7076 7950 2.079158 TCGCAAGAGCAGAGAATTTGG 58.921 47.619 0.00 0.00 45.01 3.28
7077 7951 1.467035 CGCAAGAGCAGAGAATTTGGC 60.467 52.381 0.00 0.00 42.27 4.52
7078 7952 1.817447 GCAAGAGCAGAGAATTTGGCT 59.183 47.619 0.00 0.00 41.58 4.75
7083 7957 3.361281 AGCAGAGAATTTGGCTCATGA 57.639 42.857 0.00 0.00 34.85 3.07
7084 7958 3.693807 AGCAGAGAATTTGGCTCATGAA 58.306 40.909 0.00 0.00 34.85 2.57
7085 7959 4.084287 AGCAGAGAATTTGGCTCATGAAA 58.916 39.130 0.00 0.00 34.85 2.69
7086 7960 4.525487 AGCAGAGAATTTGGCTCATGAAAA 59.475 37.500 0.00 0.00 34.85 2.29
7087 7961 4.624452 GCAGAGAATTTGGCTCATGAAAAC 59.376 41.667 0.00 0.00 34.85 2.43
7088 7962 5.566230 GCAGAGAATTTGGCTCATGAAAACT 60.566 40.000 0.00 0.00 34.85 2.66
7089 7963 6.349611 GCAGAGAATTTGGCTCATGAAAACTA 60.350 38.462 0.00 0.00 34.85 2.24
7090 7964 7.596494 CAGAGAATTTGGCTCATGAAAACTAA 58.404 34.615 0.00 0.00 34.85 2.24
7091 7965 7.754027 CAGAGAATTTGGCTCATGAAAACTAAG 59.246 37.037 0.00 0.00 34.85 2.18
7092 7966 6.928520 AGAATTTGGCTCATGAAAACTAAGG 58.071 36.000 0.00 0.00 0.00 2.69
7093 7967 6.721208 AGAATTTGGCTCATGAAAACTAAGGA 59.279 34.615 0.00 0.00 0.00 3.36
7094 7968 7.398332 AGAATTTGGCTCATGAAAACTAAGGAT 59.602 33.333 0.00 0.00 0.00 3.24
7095 7969 5.902613 TTGGCTCATGAAAACTAAGGATG 57.097 39.130 0.00 0.00 0.00 3.51
7096 7970 4.922206 TGGCTCATGAAAACTAAGGATGT 58.078 39.130 0.00 0.00 0.00 3.06
7097 7971 4.701651 TGGCTCATGAAAACTAAGGATGTG 59.298 41.667 0.00 0.00 0.00 3.21
7098 7972 4.702131 GGCTCATGAAAACTAAGGATGTGT 59.298 41.667 0.00 0.00 0.00 3.72
7099 7973 5.183904 GGCTCATGAAAACTAAGGATGTGTT 59.816 40.000 0.00 0.00 0.00 3.32
7100 7974 6.294731 GGCTCATGAAAACTAAGGATGTGTTT 60.295 38.462 0.00 0.00 35.71 2.83
7101 7975 6.583806 GCTCATGAAAACTAAGGATGTGTTTG 59.416 38.462 0.00 0.00 34.63 2.93
7102 7976 6.980593 TCATGAAAACTAAGGATGTGTTTGG 58.019 36.000 0.00 0.00 34.63 3.28
7103 7977 6.549364 TCATGAAAACTAAGGATGTGTTTGGT 59.451 34.615 0.00 0.00 34.63 3.67
7104 7978 6.783708 TGAAAACTAAGGATGTGTTTGGTT 57.216 33.333 0.00 0.00 34.63 3.67
7105 7979 7.883391 TGAAAACTAAGGATGTGTTTGGTTA 57.117 32.000 0.00 0.00 34.63 2.85
7106 7980 7.708998 TGAAAACTAAGGATGTGTTTGGTTAC 58.291 34.615 0.00 0.00 34.63 2.50
7107 7981 6.644248 AAACTAAGGATGTGTTTGGTTACC 57.356 37.500 0.00 0.00 33.36 2.85
7108 7982 5.578157 ACTAAGGATGTGTTTGGTTACCT 57.422 39.130 2.07 0.00 0.00 3.08
7109 7983 6.691255 ACTAAGGATGTGTTTGGTTACCTA 57.309 37.500 2.07 0.00 0.00 3.08
7110 7984 6.470278 ACTAAGGATGTGTTTGGTTACCTAC 58.530 40.000 2.07 1.62 0.00 3.18
7111 7985 3.934068 AGGATGTGTTTGGTTACCTACG 58.066 45.455 2.07 0.00 0.00 3.51
7112 7986 3.325716 AGGATGTGTTTGGTTACCTACGT 59.674 43.478 2.07 0.00 0.00 3.57
7113 7987 4.527816 AGGATGTGTTTGGTTACCTACGTA 59.472 41.667 2.07 0.00 0.00 3.57
7150 8024 1.003355 CGATGTGCCAGGTGTCCTT 60.003 57.895 0.00 0.00 0.00 3.36
7184 8059 2.796593 GTTGTTGCCTTGTCATTGCTTC 59.203 45.455 0.00 0.00 0.00 3.86
7190 8065 1.608590 CCTTGTCATTGCTTCCGTGTT 59.391 47.619 0.00 0.00 0.00 3.32
7257 8132 1.067084 CGTCTCATGCATCCGAGCT 59.933 57.895 8.78 0.00 34.99 4.09
7287 8162 0.820074 TGTCCGTTTTGCATTCCGGT 60.820 50.000 15.35 0.00 41.17 5.28
7321 8196 2.235402 TCCGGTGGTCATTTCTACCTTC 59.765 50.000 0.00 0.00 36.92 3.46
7324 8200 3.933332 CGGTGGTCATTTCTACCTTCTTC 59.067 47.826 0.00 0.00 36.92 2.87
7331 8208 6.349944 GGTCATTTCTACCTTCTTCTCGTGTA 60.350 42.308 0.00 0.00 33.97 2.90
7336 8213 2.537143 ACCTTCTTCTCGTGTATGGGT 58.463 47.619 0.00 0.00 0.00 4.51
7337 8214 2.904434 ACCTTCTTCTCGTGTATGGGTT 59.096 45.455 0.00 0.00 0.00 4.11
7356 8233 4.390603 GGGTTTTAAACATTTCCGGATTGC 59.609 41.667 4.15 0.00 0.00 3.56
7360 8237 0.894835 AACATTTCCGGATTGCACCC 59.105 50.000 4.15 0.00 0.00 4.61
7375 8252 2.032528 CCCAGACTTGCCAAGCGA 59.967 61.111 3.88 0.00 0.00 4.93
7504 8381 1.410932 CCCAACACCCTTCCAAAGTGA 60.411 52.381 0.00 0.00 35.47 3.41
7528 8405 3.572642 CAAAACCCACCTAAACCTCCTT 58.427 45.455 0.00 0.00 0.00 3.36
7577 8454 3.292159 GGCCGAAAACCGCACCTT 61.292 61.111 0.00 0.00 36.84 3.50
7589 8466 2.835764 ACCGCACCTTATTTGGACTCTA 59.164 45.455 0.00 0.00 0.00 2.43
7594 8471 5.749109 CGCACCTTATTTGGACTCTACTAAG 59.251 44.000 0.00 0.00 0.00 2.18
7625 8502 8.689054 TCTACCTATAAATATGTTCTCCCCTCT 58.311 37.037 0.00 0.00 0.00 3.69
7664 8542 0.178975 CTAGCCATCTCCCTCCTCGT 60.179 60.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.250332 CCCATTGCTTTTAATTTTGCTACTAGA 58.750 33.333 0.00 0.00 0.00 2.43
1 2 8.250332 TCCCATTGCTTTTAATTTTGCTACTAG 58.750 33.333 0.00 0.00 0.00 2.57
5 6 6.648725 GTGTCCCATTGCTTTTAATTTTGCTA 59.351 34.615 0.00 0.00 0.00 3.49
7 8 5.238214 TGTGTCCCATTGCTTTTAATTTTGC 59.762 36.000 0.00 0.00 0.00 3.68
8 9 6.857777 TGTGTCCCATTGCTTTTAATTTTG 57.142 33.333 0.00 0.00 0.00 2.44
10 11 9.566432 TTAATTGTGTCCCATTGCTTTTAATTT 57.434 25.926 0.00 0.00 0.00 1.82
11 12 9.737844 ATTAATTGTGTCCCATTGCTTTTAATT 57.262 25.926 0.00 0.00 0.00 1.40
12 13 9.165035 CATTAATTGTGTCCCATTGCTTTTAAT 57.835 29.630 0.00 0.00 0.00 1.40
13 14 8.370940 TCATTAATTGTGTCCCATTGCTTTTAA 58.629 29.630 0.00 0.00 0.00 1.52
14 15 7.816995 GTCATTAATTGTGTCCCATTGCTTTTA 59.183 33.333 0.00 0.00 0.00 1.52
15 16 6.650390 GTCATTAATTGTGTCCCATTGCTTTT 59.350 34.615 0.00 0.00 0.00 2.27
16 17 6.165577 GTCATTAATTGTGTCCCATTGCTTT 58.834 36.000 0.00 0.00 0.00 3.51
148 149 1.203994 GTACTAGAAGGGTTGAGCGCA 59.796 52.381 11.47 0.00 0.00 6.09
183 184 4.644103 TCTAGTTTATGTGGCGGACTAC 57.356 45.455 0.00 0.00 0.00 2.73
191 192 4.258543 TCGCCCTTTTCTAGTTTATGTGG 58.741 43.478 0.00 0.00 0.00 4.17
192 193 5.175859 TCTCGCCCTTTTCTAGTTTATGTG 58.824 41.667 0.00 0.00 0.00 3.21
193 194 5.416271 TCTCGCCCTTTTCTAGTTTATGT 57.584 39.130 0.00 0.00 0.00 2.29
227 231 3.846588 AGGAGTTTGAGAAGGGCTTATGA 59.153 43.478 0.00 0.00 0.00 2.15
267 272 2.681421 CCTGGAAAGGGCCTTGGC 60.681 66.667 21.72 14.96 0.00 4.52
280 285 5.048294 ACTTTTAAATAACGAAGGTGCCTGG 60.048 40.000 0.00 0.00 0.00 4.45
289 294 9.252962 ACTTTCTCTCGACTTTTAAATAACGAA 57.747 29.630 10.54 0.00 0.00 3.85
343 348 0.099436 GTGCACGAGGATGAAATGGC 59.901 55.000 0.00 0.00 0.00 4.40
345 350 4.944962 TTAAGTGCACGAGGATGAAATG 57.055 40.909 12.01 0.00 0.00 2.32
351 356 3.181510 GCGAAAATTAAGTGCACGAGGAT 60.182 43.478 12.01 1.71 0.00 3.24
353 358 2.095969 TGCGAAAATTAAGTGCACGAGG 60.096 45.455 12.01 0.00 0.00 4.63
375 380 8.849490 CCCGCAAAAATATATACGAAAATCATG 58.151 33.333 0.00 0.00 0.00 3.07
383 388 7.556733 AGTTTTCCCGCAAAAATATATACGA 57.443 32.000 0.00 0.00 35.68 3.43
384 389 8.623310 AAAGTTTTCCCGCAAAAATATATACG 57.377 30.769 0.00 0.00 35.68 3.06
385 390 8.739461 CGAAAGTTTTCCCGCAAAAATATATAC 58.261 33.333 0.00 0.00 35.68 1.47
386 391 8.675504 TCGAAAGTTTTCCCGCAAAAATATATA 58.324 29.630 0.00 0.00 35.68 0.86
387 392 7.540299 TCGAAAGTTTTCCCGCAAAAATATAT 58.460 30.769 0.00 0.00 35.68 0.86
388 393 6.910995 TCGAAAGTTTTCCCGCAAAAATATA 58.089 32.000 0.00 0.00 35.68 0.86
389 394 5.774630 TCGAAAGTTTTCCCGCAAAAATAT 58.225 33.333 0.00 0.00 35.68 1.28
391 423 4.048241 TCGAAAGTTTTCCCGCAAAAAT 57.952 36.364 0.00 0.00 35.68 1.82
405 437 8.681486 TGATTGAATATGAATGGATCGAAAGT 57.319 30.769 0.00 0.00 0.00 2.66
409 441 6.094464 GCCATGATTGAATATGAATGGATCGA 59.906 38.462 10.90 0.00 37.36 3.59
410 442 6.127842 TGCCATGATTGAATATGAATGGATCG 60.128 38.462 10.90 0.00 37.36 3.69
415 447 6.015772 TGTCCTGCCATGATTGAATATGAATG 60.016 38.462 0.00 0.00 0.00 2.67
433 465 0.531974 TCTGGTGTTCGTTGTCCTGC 60.532 55.000 0.00 0.00 0.00 4.85
437 469 3.750639 TTGTTTCTGGTGTTCGTTGTC 57.249 42.857 0.00 0.00 0.00 3.18
462 494 7.931578 TGTTTTACGGATCTGGATGTAATTT 57.068 32.000 6.47 0.00 0.00 1.82
474 506 5.158494 GTGGGTTTCATTGTTTTACGGATC 58.842 41.667 0.00 0.00 0.00 3.36
479 511 3.054166 GCGGTGGGTTTCATTGTTTTAC 58.946 45.455 0.00 0.00 0.00 2.01
494 526 2.193306 GCATACTTGAAATGCGGTGG 57.807 50.000 0.00 0.00 40.27 4.61
521 553 1.155889 CAGCAATTGTAGGCACGTGA 58.844 50.000 22.23 0.00 0.00 4.35
522 554 0.874390 ACAGCAATTGTAGGCACGTG 59.126 50.000 12.28 12.28 38.56 4.49
523 555 2.465860 TACAGCAATTGTAGGCACGT 57.534 45.000 7.40 0.00 41.29 4.49
530 562 6.209589 AGAGTTCAGAGTCTACAGCAATTGTA 59.790 38.462 7.40 0.00 41.29 2.41
572 609 1.745141 GCTCACCAACCATGCTCCTAG 60.745 57.143 0.00 0.00 0.00 3.02
599 636 4.576053 CGGAGAACATTATGCAAATCAGGA 59.424 41.667 0.00 0.00 0.00 3.86
600 637 4.261322 CCGGAGAACATTATGCAAATCAGG 60.261 45.833 0.00 0.00 0.00 3.86
601 638 4.261322 CCCGGAGAACATTATGCAAATCAG 60.261 45.833 0.73 0.00 0.00 2.90
604 641 3.631250 ACCCGGAGAACATTATGCAAAT 58.369 40.909 0.73 0.00 0.00 2.32
611 648 4.283978 TGTTGTTAGACCCGGAGAACATTA 59.716 41.667 0.73 0.00 32.19 1.90
621 659 3.426159 GCATGTGATTGTTGTTAGACCCG 60.426 47.826 0.00 0.00 0.00 5.28
692 730 5.632244 TTTATTGGCTAGGAAACGGAAAC 57.368 39.130 0.00 0.00 0.00 2.78
718 756 4.093261 GCTGTTTTTGTTGATTTGTGTGCT 59.907 37.500 0.00 0.00 0.00 4.40
762 800 1.301009 GCCGCTCCTTTCCCTATCG 60.301 63.158 0.00 0.00 0.00 2.92
767 805 2.595009 CTACCTGCCGCTCCTTTCCC 62.595 65.000 0.00 0.00 0.00 3.97
1026 1067 4.189188 GCTGCTGCTCCAATGCCG 62.189 66.667 8.53 0.00 36.03 5.69
1044 1111 1.727511 CTCTCGCCCTCTCTCAGCTG 61.728 65.000 7.63 7.63 0.00 4.24
1058 1125 3.506312 GAGCTCGCTCTCGCTCTCG 62.506 68.421 11.49 0.00 46.87 4.04
1059 1126 2.327940 GAGCTCGCTCTCGCTCTC 59.672 66.667 11.49 0.00 46.87 3.20
1107 1174 2.597805 GCCGCTCTAGATCCGGGA 60.598 66.667 24.75 0.00 42.17 5.14
1179 1278 2.690653 ATCTCTCCTCTCCGCCCTCG 62.691 65.000 0.00 0.00 0.00 4.63
1226 1331 3.281751 CTCGTTGCGGTTGTGCGAG 62.282 63.158 0.00 0.00 42.01 5.03
1327 1436 0.179174 GGCACCGACAAATTAAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
1328 1437 0.885196 TGGCACCGACAAATTAAGCC 59.115 50.000 0.00 0.00 40.93 4.35
1352 1462 2.355481 AACGAGCCGTGACGAACC 60.355 61.111 6.54 0.00 39.99 3.62
1415 1537 3.682292 GATCCACCCACCGCCTCAC 62.682 68.421 0.00 0.00 0.00 3.51
1416 1538 2.523740 TAGATCCACCCACCGCCTCA 62.524 60.000 0.00 0.00 0.00 3.86
1417 1539 1.749334 CTAGATCCACCCACCGCCTC 61.749 65.000 0.00 0.00 0.00 4.70
1418 1540 1.762460 CTAGATCCACCCACCGCCT 60.762 63.158 0.00 0.00 0.00 5.52
1419 1541 2.808206 CCTAGATCCACCCACCGCC 61.808 68.421 0.00 0.00 0.00 6.13
1420 1542 1.623542 AACCTAGATCCACCCACCGC 61.624 60.000 0.00 0.00 0.00 5.68
1421 1543 0.178068 CAACCTAGATCCACCCACCG 59.822 60.000 0.00 0.00 0.00 4.94
1422 1544 0.107165 GCAACCTAGATCCACCCACC 60.107 60.000 0.00 0.00 0.00 4.61
1423 1545 0.462047 CGCAACCTAGATCCACCCAC 60.462 60.000 0.00 0.00 0.00 4.61
1424 1546 1.622607 CCGCAACCTAGATCCACCCA 61.623 60.000 0.00 0.00 0.00 4.51
1425 1547 1.146263 CCGCAACCTAGATCCACCC 59.854 63.158 0.00 0.00 0.00 4.61
1446 1568 4.567159 GGAAATTCGAGCTGTTACACCTAG 59.433 45.833 0.00 0.00 0.00 3.02
1474 1596 3.458487 ACCCCCACAGATTCATAGGTAAC 59.542 47.826 0.00 0.00 0.00 2.50
1479 1601 1.492176 AGCACCCCCACAGATTCATAG 59.508 52.381 0.00 0.00 0.00 2.23
1508 1630 6.296365 TCTAGTATCTACGAATCCAACACG 57.704 41.667 0.00 0.00 0.00 4.49
1521 1643 7.646548 ATGCCGCAAATCTATCTAGTATCTA 57.353 36.000 0.00 0.00 0.00 1.98
1522 1644 5.984695 TGCCGCAAATCTATCTAGTATCT 57.015 39.130 0.00 0.00 0.00 1.98
1523 1645 7.201565 GGAAATGCCGCAAATCTATCTAGTATC 60.202 40.741 0.00 0.00 0.00 2.24
1524 1646 6.595716 GGAAATGCCGCAAATCTATCTAGTAT 59.404 38.462 0.00 0.00 0.00 2.12
1525 1647 5.932303 GGAAATGCCGCAAATCTATCTAGTA 59.068 40.000 0.00 0.00 0.00 1.82
1526 1648 4.757149 GGAAATGCCGCAAATCTATCTAGT 59.243 41.667 0.00 0.00 0.00 2.57
1527 1649 4.154918 GGGAAATGCCGCAAATCTATCTAG 59.845 45.833 0.00 0.00 37.63 2.43
1528 1650 4.072131 GGGAAATGCCGCAAATCTATCTA 58.928 43.478 0.00 0.00 37.63 1.98
1529 1651 2.887152 GGGAAATGCCGCAAATCTATCT 59.113 45.455 0.00 0.00 37.63 1.98
1530 1652 3.288809 GGGAAATGCCGCAAATCTATC 57.711 47.619 0.00 0.00 37.63 2.08
1541 1663 0.034863 TAACGGACAGGGGAAATGCC 60.035 55.000 0.00 0.00 0.00 4.40
1563 1685 2.358125 CGCATGAACGGGGTCACA 60.358 61.111 0.00 0.00 0.00 3.58
1579 1706 1.153823 ACCGCTCGTCAATTCCTCG 60.154 57.895 0.00 0.00 0.00 4.63
1640 1908 7.448161 TGCTAAACATGGACCCAAATATATCTG 59.552 37.037 0.00 0.00 0.00 2.90
1642 1910 7.759489 TGCTAAACATGGACCCAAATATATC 57.241 36.000 0.00 0.00 0.00 1.63
1643 1911 8.725606 AATGCTAAACATGGACCCAAATATAT 57.274 30.769 0.00 0.00 39.60 0.86
1644 1912 8.546083 AAATGCTAAACATGGACCCAAATATA 57.454 30.769 0.00 0.00 39.60 0.86
1645 1913 7.125507 TGAAATGCTAAACATGGACCCAAATAT 59.874 33.333 0.00 0.00 39.60 1.28
1646 1914 6.438741 TGAAATGCTAAACATGGACCCAAATA 59.561 34.615 0.00 0.00 39.60 1.40
1647 1915 5.248020 TGAAATGCTAAACATGGACCCAAAT 59.752 36.000 0.00 0.00 39.60 2.32
1648 1916 4.590647 TGAAATGCTAAACATGGACCCAAA 59.409 37.500 0.00 0.00 39.60 3.28
1654 1922 5.945191 TCATCAGTGAAATGCTAAACATGGA 59.055 36.000 0.00 0.00 39.60 3.41
1665 1933 1.404391 GGCAGGCTCATCAGTGAAATG 59.596 52.381 0.00 0.00 33.05 2.32
1669 1937 1.208052 GTAAGGCAGGCTCATCAGTGA 59.792 52.381 0.00 0.00 0.00 3.41
1722 1991 3.944015 ACAGCTGAAACTATGATCCAAGC 59.056 43.478 23.35 0.00 0.00 4.01
1743 2012 2.010145 TGATCGTCTGCTTGGCTTAC 57.990 50.000 0.00 0.00 0.00 2.34
1836 2116 3.554934 AGATGAAAACAGGTCAGCACAA 58.445 40.909 0.00 0.00 33.81 3.33
1858 2139 0.744874 CTCCTTGCCCTGCATCAATG 59.255 55.000 0.00 0.00 38.76 2.82
2153 2467 4.402056 ACAAGGAATGACCAGTATACCG 57.598 45.455 0.00 0.00 42.04 4.02
2166 2489 7.624360 TTTTATATGTCGAGCAACAAGGAAT 57.376 32.000 0.00 0.00 31.81 3.01
2232 2562 6.569035 CGATGCATACACCAATTAGCATGATT 60.569 38.462 0.00 0.00 42.18 2.57
2246 2581 2.672874 TGTCAAGAAGCGATGCATACAC 59.327 45.455 0.00 0.00 0.00 2.90
2257 2592 5.157067 GCTACCTGAATTTTGTCAAGAAGC 58.843 41.667 0.00 0.00 0.00 3.86
2261 2596 3.193479 GGGGCTACCTGAATTTTGTCAAG 59.807 47.826 0.00 0.00 36.80 3.02
2518 2880 3.672808 CACAAGAGCAAGGAGTTCTCAT 58.327 45.455 2.24 0.00 36.73 2.90
2599 2961 2.028190 CTGCGGATAGAGTGGCGG 59.972 66.667 0.00 0.00 0.00 6.13
3062 3426 8.631797 TCAGTTTCATTGAGTCATTTCAAATCA 58.368 29.630 0.00 0.00 40.21 2.57
3319 3685 5.975693 GGTACCATTTTGGAAACTGATCA 57.024 39.130 7.15 0.00 40.96 2.92
4020 4388 0.839946 CAGGATGGTCCCTAGGGTTG 59.160 60.000 27.58 11.30 37.19 3.77
4067 4435 0.725784 GTTGTCAAATGGCAGACGCG 60.726 55.000 3.53 3.53 39.92 6.01
4082 4450 9.612066 AAGTTGACATTATTTTGAAATGGTTGT 57.388 25.926 0.00 1.22 38.41 3.32
4331 4699 6.036191 TGCAATCGTATAATTAGCAACGAACA 59.964 34.615 18.51 15.10 46.18 3.18
5018 5421 2.872245 CTCAAGAACCAAAGCGAAGACA 59.128 45.455 0.00 0.00 0.00 3.41
5349 5763 9.136952 CTGAAGCAAAATAAAAGGAAATCTCAG 57.863 33.333 0.00 0.00 0.00 3.35
5358 5772 6.091713 CAGCCAATCTGAAGCAAAATAAAAGG 59.908 38.462 0.00 0.00 45.72 3.11
5370 5784 4.202440 ACCATAGATCCAGCCAATCTGAAG 60.202 45.833 3.92 0.00 45.72 3.02
5417 5831 1.718711 CTTGCGTGCATTTTAAACCCG 59.281 47.619 0.00 0.00 0.00 5.28
5468 5882 1.112916 AACCCTTGAAACAAGGCCGG 61.113 55.000 20.90 12.35 36.10 6.13
5528 5942 4.778143 GACCCAAGCGCCCATCGT 62.778 66.667 2.29 0.00 41.07 3.73
5537 5951 3.319122 ACAGAATTTCAACTGACCCAAGC 59.681 43.478 0.00 0.00 37.54 4.01
5645 6059 1.852965 AGTGGGAGGGATGTTAATGGG 59.147 52.381 0.00 0.00 0.00 4.00
5786 6278 1.135402 GTGAGGGTTTTAGCAATGCGG 60.135 52.381 0.00 0.00 0.00 5.69
6042 6551 4.444838 TTGGTGTCGATCCCGGCG 62.445 66.667 0.00 0.00 44.62 6.46
6324 6837 0.738975 TGGACCAGACGATGACGATC 59.261 55.000 0.00 0.00 42.66 3.69
6396 6909 2.747686 GCCTTCTGGGTGTCGGAA 59.252 61.111 0.00 0.00 38.35 4.30
6455 6968 4.742201 TCACTCTTGAGCGCCGGC 62.742 66.667 19.07 19.07 40.37 6.13
6563 7093 3.007182 CGACAAGGGTACTAACAAAGGGA 59.993 47.826 0.00 0.00 0.00 4.20
6598 7140 1.067060 GGCTTGACTGTTTGTGGTTCC 59.933 52.381 0.00 0.00 0.00 3.62
6606 7148 1.972872 CAGTGGAGGCTTGACTGTTT 58.027 50.000 15.27 0.00 33.77 2.83
6607 7149 0.536006 GCAGTGGAGGCTTGACTGTT 60.536 55.000 21.21 0.00 39.48 3.16
6608 7150 1.072159 GCAGTGGAGGCTTGACTGT 59.928 57.895 21.21 0.00 39.48 3.55
6609 7151 1.673665 GGCAGTGGAGGCTTGACTG 60.674 63.158 17.93 17.93 40.14 3.51
6610 7152 0.545309 TAGGCAGTGGAGGCTTGACT 60.545 55.000 0.00 0.00 42.35 3.41
6611 7153 0.391793 GTAGGCAGTGGAGGCTTGAC 60.392 60.000 0.00 0.00 42.35 3.18
6612 7154 1.888436 CGTAGGCAGTGGAGGCTTGA 61.888 60.000 0.00 0.00 42.35 3.02
6613 7155 1.448540 CGTAGGCAGTGGAGGCTTG 60.449 63.158 0.00 0.00 42.35 4.01
6614 7156 1.192146 TTCGTAGGCAGTGGAGGCTT 61.192 55.000 0.00 0.00 42.35 4.35
6616 7158 1.019805 GTTTCGTAGGCAGTGGAGGC 61.020 60.000 0.00 0.00 0.00 4.70
6617 7159 0.391263 GGTTTCGTAGGCAGTGGAGG 60.391 60.000 0.00 0.00 0.00 4.30
6618 7160 0.608640 AGGTTTCGTAGGCAGTGGAG 59.391 55.000 0.00 0.00 0.00 3.86
6619 7161 0.320374 CAGGTTTCGTAGGCAGTGGA 59.680 55.000 0.00 0.00 0.00 4.02
6620 7162 1.298859 GCAGGTTTCGTAGGCAGTGG 61.299 60.000 0.00 0.00 0.00 4.00
6621 7163 0.602638 TGCAGGTTTCGTAGGCAGTG 60.603 55.000 0.00 0.00 0.00 3.66
6622 7164 0.320771 CTGCAGGTTTCGTAGGCAGT 60.321 55.000 5.57 0.00 45.11 4.40
6623 7165 2.460330 CTGCAGGTTTCGTAGGCAG 58.540 57.895 5.57 0.00 44.91 4.85
6666 7211 6.739331 ACAAGTATCACAAATGGGGAAAAA 57.261 33.333 0.00 0.00 0.00 1.94
6670 7221 5.255397 AGAACAAGTATCACAAATGGGGA 57.745 39.130 0.00 0.00 0.00 4.81
6781 7640 5.121454 GGTTGACACTAGAATTGCAGAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
6782 7641 4.997395 GGTTGACACTAGAATTGCAGAAGA 59.003 41.667 0.00 0.00 0.00 2.87
6783 7642 4.143030 CGGTTGACACTAGAATTGCAGAAG 60.143 45.833 0.00 0.00 0.00 2.85
6784 7643 3.745975 CGGTTGACACTAGAATTGCAGAA 59.254 43.478 0.00 0.00 0.00 3.02
6785 7644 3.244078 ACGGTTGACACTAGAATTGCAGA 60.244 43.478 0.00 0.00 0.00 4.26
6786 7645 3.067106 ACGGTTGACACTAGAATTGCAG 58.933 45.455 0.00 0.00 0.00 4.41
6787 7646 2.805671 CACGGTTGACACTAGAATTGCA 59.194 45.455 0.00 0.00 0.00 4.08
6788 7647 2.159627 CCACGGTTGACACTAGAATTGC 59.840 50.000 0.00 0.00 0.00 3.56
6789 7648 2.159627 GCCACGGTTGACACTAGAATTG 59.840 50.000 0.00 0.00 0.00 2.32
6790 7649 2.224426 TGCCACGGTTGACACTAGAATT 60.224 45.455 0.00 0.00 0.00 2.17
6791 7650 1.346395 TGCCACGGTTGACACTAGAAT 59.654 47.619 0.00 0.00 0.00 2.40
6792 7651 0.753867 TGCCACGGTTGACACTAGAA 59.246 50.000 0.00 0.00 0.00 2.10
6793 7652 0.973632 ATGCCACGGTTGACACTAGA 59.026 50.000 0.00 0.00 0.00 2.43
6794 7653 1.078709 CATGCCACGGTTGACACTAG 58.921 55.000 0.00 0.00 0.00 2.57
6795 7654 0.321210 CCATGCCACGGTTGACACTA 60.321 55.000 0.00 0.00 0.00 2.74
6796 7655 1.600636 CCATGCCACGGTTGACACT 60.601 57.895 0.00 0.00 0.00 3.55
6797 7656 1.169661 TTCCATGCCACGGTTGACAC 61.170 55.000 0.00 0.00 0.00 3.67
6798 7657 0.251121 ATTCCATGCCACGGTTGACA 60.251 50.000 0.00 0.00 0.00 3.58
6799 7658 1.745232 TATTCCATGCCACGGTTGAC 58.255 50.000 0.00 0.00 0.00 3.18
6800 7659 2.296792 CATATTCCATGCCACGGTTGA 58.703 47.619 0.00 0.00 0.00 3.18
6801 7660 1.337703 CCATATTCCATGCCACGGTTG 59.662 52.381 0.00 0.00 0.00 3.77
6802 7661 1.214175 TCCATATTCCATGCCACGGTT 59.786 47.619 0.00 0.00 0.00 4.44
6803 7662 0.843309 TCCATATTCCATGCCACGGT 59.157 50.000 0.00 0.00 0.00 4.83
6804 7663 2.086869 GATCCATATTCCATGCCACGG 58.913 52.381 0.00 0.00 0.00 4.94
6805 7664 3.063510 AGATCCATATTCCATGCCACG 57.936 47.619 0.00 0.00 0.00 4.94
6806 7665 4.458295 CAGAAGATCCATATTCCATGCCAC 59.542 45.833 0.00 0.00 0.00 5.01
6807 7666 4.659115 CAGAAGATCCATATTCCATGCCA 58.341 43.478 0.00 0.00 0.00 4.92
6808 7667 3.442977 GCAGAAGATCCATATTCCATGCC 59.557 47.826 0.00 0.00 28.77 4.40
6809 7668 4.077108 TGCAGAAGATCCATATTCCATGC 58.923 43.478 0.00 2.69 32.90 4.06
6810 7669 6.835819 ATTGCAGAAGATCCATATTCCATG 57.164 37.500 0.00 0.00 0.00 3.66
6811 7670 7.239438 AGAATTGCAGAAGATCCATATTCCAT 58.761 34.615 0.00 0.00 0.00 3.41
6812 7671 6.607970 AGAATTGCAGAAGATCCATATTCCA 58.392 36.000 0.00 0.00 0.00 3.53
6813 7672 7.882271 ACTAGAATTGCAGAAGATCCATATTCC 59.118 37.037 0.00 0.00 0.00 3.01
6814 7673 8.719648 CACTAGAATTGCAGAAGATCCATATTC 58.280 37.037 0.00 0.00 0.00 1.75
6815 7674 8.216423 ACACTAGAATTGCAGAAGATCCATATT 58.784 33.333 0.00 0.00 0.00 1.28
6816 7675 7.743749 ACACTAGAATTGCAGAAGATCCATAT 58.256 34.615 0.00 0.00 0.00 1.78
6817 7676 7.129457 ACACTAGAATTGCAGAAGATCCATA 57.871 36.000 0.00 0.00 0.00 2.74
6818 7677 5.999044 ACACTAGAATTGCAGAAGATCCAT 58.001 37.500 0.00 0.00 0.00 3.41
6819 7678 5.046376 TGACACTAGAATTGCAGAAGATCCA 60.046 40.000 0.00 0.00 0.00 3.41
6820 7679 5.423015 TGACACTAGAATTGCAGAAGATCC 58.577 41.667 0.00 0.00 0.00 3.36
6821 7680 6.183360 GGTTGACACTAGAATTGCAGAAGATC 60.183 42.308 0.00 0.00 0.00 2.75
6822 7681 5.645497 GGTTGACACTAGAATTGCAGAAGAT 59.355 40.000 0.00 0.00 0.00 2.40
6823 7682 4.997395 GGTTGACACTAGAATTGCAGAAGA 59.003 41.667 0.00 0.00 0.00 2.87
6824 7683 4.143030 CGGTTGACACTAGAATTGCAGAAG 60.143 45.833 0.00 0.00 0.00 2.85
6825 7684 3.745975 CGGTTGACACTAGAATTGCAGAA 59.254 43.478 0.00 0.00 0.00 3.02
6905 7774 2.845967 GCCAAATTGTTATCGAACGCAG 59.154 45.455 0.00 0.00 38.51 5.18
6908 7777 4.657055 TCATGCCAAATTGTTATCGAACG 58.343 39.130 0.00 0.00 38.51 3.95
6912 7781 5.590145 TCCATTCATGCCAAATTGTTATCG 58.410 37.500 0.00 0.00 0.00 2.92
6914 7783 6.764085 CACATCCATTCATGCCAAATTGTTAT 59.236 34.615 0.00 0.00 0.00 1.89
6918 7787 3.874543 CCACATCCATTCATGCCAAATTG 59.125 43.478 0.00 0.00 0.00 2.32
6989 7860 4.567558 CAGTGTTTCAAGCATCAAAGCAAA 59.432 37.500 0.00 0.00 36.85 3.68
7064 7938 4.445452 TTTCATGAGCCAAATTCTCTGC 57.555 40.909 0.00 0.00 0.00 4.26
7066 7940 7.094032 CCTTAGTTTTCATGAGCCAAATTCTCT 60.094 37.037 0.00 0.00 0.00 3.10
7073 7947 5.183713 CACATCCTTAGTTTTCATGAGCCAA 59.816 40.000 0.00 0.00 0.00 4.52
7074 7948 4.701651 CACATCCTTAGTTTTCATGAGCCA 59.298 41.667 0.00 0.00 0.00 4.75
7075 7949 4.702131 ACACATCCTTAGTTTTCATGAGCC 59.298 41.667 0.00 0.00 0.00 4.70
7076 7950 5.886960 ACACATCCTTAGTTTTCATGAGC 57.113 39.130 0.00 0.00 0.00 4.26
7077 7951 7.086376 CCAAACACATCCTTAGTTTTCATGAG 58.914 38.462 0.00 0.00 33.54 2.90
7078 7952 6.549364 ACCAAACACATCCTTAGTTTTCATGA 59.451 34.615 0.00 0.00 33.54 3.07
7079 7953 6.748132 ACCAAACACATCCTTAGTTTTCATG 58.252 36.000 0.00 0.00 33.54 3.07
7080 7954 6.976934 ACCAAACACATCCTTAGTTTTCAT 57.023 33.333 0.00 0.00 33.54 2.57
7081 7955 6.783708 AACCAAACACATCCTTAGTTTTCA 57.216 33.333 0.00 0.00 33.54 2.69
7082 7956 7.013942 AGGTAACCAAACACATCCTTAGTTTTC 59.986 37.037 0.00 0.00 33.54 2.29
7083 7957 6.837048 AGGTAACCAAACACATCCTTAGTTTT 59.163 34.615 0.00 0.00 33.54 2.43
7084 7958 6.370453 AGGTAACCAAACACATCCTTAGTTT 58.630 36.000 0.00 0.00 36.00 2.66
7085 7959 5.948842 AGGTAACCAAACACATCCTTAGTT 58.051 37.500 0.00 0.00 37.17 2.24
7086 7960 5.578157 AGGTAACCAAACACATCCTTAGT 57.422 39.130 0.00 0.00 37.17 2.24
7087 7961 5.579511 CGTAGGTAACCAAACACATCCTTAG 59.420 44.000 0.00 0.00 37.17 2.18
7088 7962 5.011943 ACGTAGGTAACCAAACACATCCTTA 59.988 40.000 0.00 0.00 37.17 2.69
7089 7963 4.202388 ACGTAGGTAACCAAACACATCCTT 60.202 41.667 0.00 0.00 37.17 3.36
7090 7964 3.325716 ACGTAGGTAACCAAACACATCCT 59.674 43.478 0.00 0.00 37.17 3.24
7091 7965 3.667360 ACGTAGGTAACCAAACACATCC 58.333 45.455 0.00 0.00 37.17 3.51
7092 7966 7.707893 ACATATACGTAGGTAACCAAACACATC 59.292 37.037 0.08 0.00 31.15 3.06
7093 7967 7.558604 ACATATACGTAGGTAACCAAACACAT 58.441 34.615 0.08 0.00 31.15 3.21
7094 7968 6.934056 ACATATACGTAGGTAACCAAACACA 58.066 36.000 0.08 0.00 31.15 3.72
7095 7969 8.807581 GTTACATATACGTAGGTAACCAAACAC 58.192 37.037 23.54 9.08 45.43 3.32
7096 7970 8.925161 GTTACATATACGTAGGTAACCAAACA 57.075 34.615 23.54 3.04 45.43 2.83
7102 7976 5.154222 GGGCGTTACATATACGTAGGTAAC 58.846 45.833 23.85 23.85 46.62 2.50
7103 7977 4.217550 GGGGCGTTACATATACGTAGGTAA 59.782 45.833 0.08 7.23 40.92 2.85
7104 7978 3.756434 GGGGCGTTACATATACGTAGGTA 59.244 47.826 0.08 0.00 40.92 3.08
7105 7979 2.558359 GGGGCGTTACATATACGTAGGT 59.442 50.000 0.08 2.06 40.92 3.08
7106 7980 2.414559 CGGGGCGTTACATATACGTAGG 60.415 54.545 0.08 0.00 40.92 3.18
7107 7981 2.483877 TCGGGGCGTTACATATACGTAG 59.516 50.000 0.08 0.00 40.92 3.51
7108 7982 2.483877 CTCGGGGCGTTACATATACGTA 59.516 50.000 0.00 0.00 40.92 3.57
7109 7983 1.267806 CTCGGGGCGTTACATATACGT 59.732 52.381 0.00 0.00 40.92 3.57
7110 7984 1.536766 TCTCGGGGCGTTACATATACG 59.463 52.381 0.00 0.00 41.71 3.06
7111 7985 2.352127 GGTCTCGGGGCGTTACATATAC 60.352 54.545 0.00 0.00 0.00 1.47
7112 7986 1.888512 GGTCTCGGGGCGTTACATATA 59.111 52.381 0.00 0.00 0.00 0.86
7113 7987 0.677842 GGTCTCGGGGCGTTACATAT 59.322 55.000 0.00 0.00 0.00 1.78
7150 8024 2.225491 GGCAACAACAGCGAATAACTGA 59.775 45.455 0.00 0.00 38.55 3.41
7190 8065 8.962679 ACATGATGACATAATATGCAATGCATA 58.037 29.630 27.39 27.39 43.48 3.14
7204 8079 6.477360 GCAAATGAAATGCACATGATGACATA 59.523 34.615 0.00 0.00 43.29 2.29
7321 8196 6.548441 TGTTTAAAACCCATACACGAGAAG 57.452 37.500 0.00 0.00 0.00 2.85
7324 8200 6.804783 GGAAATGTTTAAAACCCATACACGAG 59.195 38.462 0.00 0.00 0.00 4.18
7331 8208 6.169800 CAATCCGGAAATGTTTAAAACCCAT 58.830 36.000 9.01 0.00 0.00 4.00
7336 8213 4.991687 GGTGCAATCCGGAAATGTTTAAAA 59.008 37.500 9.01 0.00 0.00 1.52
7337 8214 4.561105 GGTGCAATCCGGAAATGTTTAAA 58.439 39.130 9.01 0.00 0.00 1.52
7356 8233 2.620112 CGCTTGGCAAGTCTGGGTG 61.620 63.158 26.71 5.14 0.00 4.61
7360 8237 0.886490 AAGGTCGCTTGGCAAGTCTG 60.886 55.000 26.71 17.22 0.00 3.51
7401 8278 6.485313 AGTCCAAATGATACGAAACTTGACAA 59.515 34.615 0.00 0.00 0.00 3.18
7504 8381 1.576757 AGGTTTAGGTGGGTTTTGGGT 59.423 47.619 0.00 0.00 0.00 4.51
7528 8405 1.375551 TCGAACGACCGAGATGATGA 58.624 50.000 0.00 0.00 34.19 2.92
7594 8471 8.751242 GGAGAACATATTTATAGGTAGAGGGAC 58.249 40.741 0.00 0.00 0.00 4.46
7616 8493 0.460311 GCGAATTTCGAGAGGGGAGA 59.540 55.000 22.25 0.00 43.74 3.71
7625 8502 1.935199 GGGTTTATCCGCGAATTTCGA 59.065 47.619 22.25 2.02 42.51 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.