Multiple sequence alignment - TraesCS6A01G076400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G076400 chr6A 100.000 4433 0 0 1 4433 46717799 46713367 0.000000e+00 8187.0
1 TraesCS6A01G076400 chr6A 74.925 1328 262 48 993 2279 33255152 33256449 3.900000e-150 542.0
2 TraesCS6A01G076400 chr6A 80.892 471 72 13 984 1441 46054447 46054912 5.450000e-94 355.0
3 TraesCS6A01G076400 chr6A 82.828 297 40 8 1014 1309 34009352 34009638 5.690000e-64 255.0
4 TraesCS6A01G076400 chr6A 76.645 471 95 14 1899 2361 47542164 47541701 3.420000e-61 246.0
5 TraesCS6A01G076400 chr6A 83.594 128 15 5 2663 2789 34030915 34031037 1.010000e-21 115.0
6 TraesCS6A01G076400 chr6A 89.041 73 8 0 2982 3054 45870615 45870687 1.700000e-14 91.6
7 TraesCS6A01G076400 chr6A 90.385 52 5 0 2975 3026 47467659 47467608 7.960000e-08 69.4
8 TraesCS6A01G076400 chr6B 91.040 2020 96 27 936 2895 79846965 79848959 0.000000e+00 2649.0
9 TraesCS6A01G076400 chr6B 91.254 1555 82 14 2894 4429 79848992 79850511 0.000000e+00 2069.0
10 TraesCS6A01G076400 chr6B 84.416 847 128 4 4 848 15841474 15840630 0.000000e+00 830.0
11 TraesCS6A01G076400 chr6B 75.885 1327 244 54 993 2279 60593806 60595096 3.790000e-170 608.0
12 TraesCS6A01G076400 chr6B 74.141 1222 268 39 998 2197 79275377 79276572 3.120000e-126 462.0
13 TraesCS6A01G076400 chr6B 84.387 269 37 5 958 1226 75514637 75514374 4.400000e-65 259.0
14 TraesCS6A01G076400 chr6B 82.812 128 16 5 2663 2789 62127342 62127464 4.690000e-20 110.0
15 TraesCS6A01G076400 chr6B 90.000 80 8 0 2975 3054 79336152 79336073 2.180000e-18 104.0
16 TraesCS6A01G076400 chr6B 87.356 87 10 1 2968 3054 79041872 79041787 1.010000e-16 99.0
17 TraesCS6A01G076400 chr6B 87.059 85 10 1 2968 3052 79300241 79300158 1.310000e-15 95.3
18 TraesCS6A01G076400 chr6B 86.207 87 9 3 3482 3565 49407560 49407474 1.700000e-14 91.6
19 TraesCS6A01G076400 chr6B 85.882 85 11 1 2672 2756 54150410 54150493 6.110000e-14 89.8
20 TraesCS6A01G076400 chrUn 87.348 1565 130 29 971 2488 27447690 27449233 0.000000e+00 1731.0
21 TraesCS6A01G076400 chrUn 84.910 1173 139 18 928 2089 27364798 27365943 0.000000e+00 1151.0
22 TraesCS6A01G076400 chrUn 88.796 714 57 9 2894 3590 27370152 27370859 0.000000e+00 854.0
23 TraesCS6A01G076400 chrUn 84.534 847 127 4 4 848 326629279 326628435 0.000000e+00 835.0
24 TraesCS6A01G076400 chrUn 87.978 366 29 5 4065 4430 27458526 27458876 6.860000e-113 418.0
25 TraesCS6A01G076400 chrUn 92.889 225 15 1 2418 2642 27366335 27366558 4.280000e-85 326.0
26 TraesCS6A01G076400 chrUn 80.162 494 45 18 2290 2744 27449229 27449708 1.990000e-83 320.0
27 TraesCS6A01G076400 chrUn 84.899 298 35 5 2000 2295 27365944 27366233 4.340000e-75 292.0
28 TraesCS6A01G076400 chrUn 88.318 214 12 6 2683 2895 27369918 27370119 1.230000e-60 244.0
29 TraesCS6A01G076400 chrUn 88.462 104 10 2 2687 2790 112650638 112650739 1.670000e-24 124.0
30 TraesCS6A01G076400 chrUn 85.227 88 8 3 2936 3023 27971898 27971816 7.900000e-13 86.1
31 TraesCS6A01G076400 chrUn 91.837 49 4 0 2975 3023 27076414 27076462 7.960000e-08 69.4
32 TraesCS6A01G076400 chr4B 85.832 847 116 4 4 848 405931397 405932241 0.000000e+00 896.0
33 TraesCS6A01G076400 chr1B 85.311 851 119 6 1 848 485678448 485679295 0.000000e+00 874.0
34 TraesCS6A01G076400 chr2D 84.497 845 131 0 4 848 60172938 60173782 0.000000e+00 835.0
35 TraesCS6A01G076400 chr7B 84.272 852 126 6 1 848 728048527 728049374 0.000000e+00 824.0
36 TraesCS6A01G076400 chr2A 83.550 845 139 0 4 848 692067904 692068748 0.000000e+00 791.0
37 TraesCS6A01G076400 chr2A 83.373 848 133 7 4 848 561245465 561244623 0.000000e+00 778.0
38 TraesCS6A01G076400 chr3D 83.593 835 133 4 16 848 483539815 483540647 0.000000e+00 780.0
39 TraesCS6A01G076400 chr6D 75.136 1468 275 61 935 2352 29194673 29196100 1.360000e-169 606.0
40 TraesCS6A01G076400 chr6D 84.000 125 14 5 2666 2789 28656592 28656473 1.010000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G076400 chr6A 46713367 46717799 4432 True 8187.0 8187 100.0000 1 4433 1 chr6A.!!$R1 4432
1 TraesCS6A01G076400 chr6A 33255152 33256449 1297 False 542.0 542 74.9250 993 2279 1 chr6A.!!$F1 1286
2 TraesCS6A01G076400 chr6B 79846965 79850511 3546 False 2359.0 2649 91.1470 936 4429 2 chr6B.!!$F5 3493
3 TraesCS6A01G076400 chr6B 15840630 15841474 844 True 830.0 830 84.4160 4 848 1 chr6B.!!$R1 844
4 TraesCS6A01G076400 chr6B 60593806 60595096 1290 False 608.0 608 75.8850 993 2279 1 chr6B.!!$F2 1286
5 TraesCS6A01G076400 chr6B 79275377 79276572 1195 False 462.0 462 74.1410 998 2197 1 chr6B.!!$F4 1199
6 TraesCS6A01G076400 chrUn 27447690 27449708 2018 False 1025.5 1731 83.7550 971 2744 2 chrUn.!!$F5 1773
7 TraesCS6A01G076400 chrUn 326628435 326629279 844 True 835.0 835 84.5340 4 848 1 chrUn.!!$R2 844
8 TraesCS6A01G076400 chrUn 27364798 27370859 6061 False 573.4 1151 87.9624 928 3590 5 chrUn.!!$F4 2662
9 TraesCS6A01G076400 chr4B 405931397 405932241 844 False 896.0 896 85.8320 4 848 1 chr4B.!!$F1 844
10 TraesCS6A01G076400 chr1B 485678448 485679295 847 False 874.0 874 85.3110 1 848 1 chr1B.!!$F1 847
11 TraesCS6A01G076400 chr2D 60172938 60173782 844 False 835.0 835 84.4970 4 848 1 chr2D.!!$F1 844
12 TraesCS6A01G076400 chr7B 728048527 728049374 847 False 824.0 824 84.2720 1 848 1 chr7B.!!$F1 847
13 TraesCS6A01G076400 chr2A 692067904 692068748 844 False 791.0 791 83.5500 4 848 1 chr2A.!!$F1 844
14 TraesCS6A01G076400 chr2A 561244623 561245465 842 True 778.0 778 83.3730 4 848 1 chr2A.!!$R1 844
15 TraesCS6A01G076400 chr3D 483539815 483540647 832 False 780.0 780 83.5930 16 848 1 chr3D.!!$F1 832
16 TraesCS6A01G076400 chr6D 29194673 29196100 1427 False 606.0 606 75.1360 935 2352 1 chr6D.!!$F1 1417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 923 0.037590 ATTAGCACTTTGGGCCGTGA 59.962 50.0 13.39 0.00 33.04 4.35 F
922 925 0.037590 TAGCACTTTGGGCCGTGATT 59.962 50.0 13.39 4.08 31.54 2.57 F
1639 1709 0.322816 TCCATCCAAGGCTTCTGTGC 60.323 55.0 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1902 1.208293 GACCAAGACCACCATCCTCTC 59.792 57.143 0.00 0.0 0.00 3.20 R
2202 2384 1.401539 GGCAAAAGGATGTGAGCGAAC 60.402 52.381 0.00 0.0 0.00 3.95 R
3590 7427 0.535102 AGGTGACCAAGCAGGAAACG 60.535 55.000 3.63 0.0 41.22 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.873129 CGGTCCCATGACGCCGAG 62.873 72.222 13.87 0.00 46.33 4.63
38 39 6.350864 CCGAGGTATGATCAATTAGCTCAGAT 60.351 42.308 24.63 0.60 37.02 2.90
45 46 6.453943 TGATCAATTAGCTCAGATACTCTGC 58.546 40.000 0.00 0.00 43.95 4.26
79 80 8.844592 TTTGTCACCAAACACCCATATGGTCT 62.845 42.308 20.46 2.12 44.12 3.85
121 122 4.946160 TCCAGTTGTCCCTCCAAATATT 57.054 40.909 0.00 0.00 0.00 1.28
132 133 6.434340 GTCCCTCCAAATATTTGTTGTCTCTT 59.566 38.462 23.24 0.00 36.45 2.85
144 145 3.515502 TGTTGTCTCTTCATTCCCGATCT 59.484 43.478 0.00 0.00 0.00 2.75
179 180 4.586421 CCTTGTCTCAGTATATCTCTGCCA 59.414 45.833 3.76 0.00 33.48 4.92
193 194 1.078497 TGCCATCAACTACAGCCCG 60.078 57.895 0.00 0.00 0.00 6.13
249 250 5.523916 GCTTCTAAAATATCAGACTGCGGAA 59.476 40.000 0.00 0.00 0.00 4.30
280 281 5.126067 GCTTCTAAGGATTCTGGCACATAA 58.874 41.667 0.00 0.00 38.20 1.90
302 303 3.023832 GGTATTAGGGTGCTGCAACAAT 58.976 45.455 20.65 13.60 0.00 2.71
308 309 0.961019 GGTGCTGCAACAATCTCCAA 59.039 50.000 13.80 0.00 0.00 3.53
314 315 2.295349 CTGCAACAATCTCCAAGCTTGT 59.705 45.455 24.35 3.45 36.25 3.16
361 362 6.109359 ACAATTCAAAGTCCTCGAATCCTAG 58.891 40.000 0.00 0.00 0.00 3.02
365 366 3.673543 AAGTCCTCGAATCCTAGACCT 57.326 47.619 0.00 0.00 0.00 3.85
374 375 2.424684 ATCCTAGACCTCCCATTCCC 57.575 55.000 0.00 0.00 0.00 3.97
425 426 1.530720 CAATGCGGTTTTCTTTTGCCC 59.469 47.619 0.00 0.00 0.00 5.36
434 436 4.191544 GTTTTCTTTTGCCCTCTTTGCTT 58.808 39.130 0.00 0.00 0.00 3.91
467 469 8.971321 CAAAACTTCCTTATCAACATGTTCAAG 58.029 33.333 8.48 11.78 0.00 3.02
476 478 5.635417 TCAACATGTTCAAGTGTTCACAA 57.365 34.783 8.48 0.00 36.48 3.33
483 485 1.110442 CAAGTGTTCACAAAGGCCCA 58.890 50.000 0.00 0.00 0.00 5.36
488 490 1.337118 GTTCACAAAGGCCCATTGGA 58.663 50.000 19.78 12.54 32.02 3.53
500 502 3.588955 GCCCATTGGAAGTTTAAAGCAG 58.411 45.455 3.62 0.00 0.00 4.24
506 508 6.152661 CCATTGGAAGTTTAAAGCAGGACATA 59.847 38.462 0.00 0.00 0.00 2.29
602 605 0.178953 ACCCTTGCACTTTGCTCCAT 60.179 50.000 0.00 0.00 45.31 3.41
605 608 2.094545 CCCTTGCACTTTGCTCCATAAC 60.095 50.000 0.00 0.00 45.31 1.89
629 632 4.186926 GGTCCTTTAGGTACTTAAAGGCG 58.813 47.826 35.16 21.67 42.92 5.52
650 653 3.364621 CGCCGTTCTTTGAATTTCCAATG 59.635 43.478 0.00 0.00 0.00 2.82
653 656 4.923281 CCGTTCTTTGAATTTCCAATGTCC 59.077 41.667 0.00 0.00 0.00 4.02
656 659 6.212955 GTTCTTTGAATTTCCAATGTCCGAA 58.787 36.000 0.00 0.00 0.00 4.30
680 683 5.960202 AGGCATTCCAAGGTATTTCTCATTT 59.040 36.000 0.00 0.00 33.74 2.32
683 686 7.428826 GCATTCCAAGGTATTTCTCATTTAGG 58.571 38.462 0.00 0.00 0.00 2.69
695 698 4.609301 TCTCATTTAGGGTTTCATTGGGG 58.391 43.478 0.00 0.00 0.00 4.96
708 711 6.203915 GGTTTCATTGGGGACATTTAACAAAC 59.796 38.462 0.00 0.00 42.32 2.93
709 712 6.485830 TTCATTGGGGACATTTAACAAACA 57.514 33.333 0.00 0.00 42.32 2.83
715 718 8.664211 TTGGGGACATTTAACAAACATTTTAC 57.336 30.769 0.00 0.00 42.32 2.01
732 735 2.242882 TACCTCCACCCTTACACTCC 57.757 55.000 0.00 0.00 0.00 3.85
734 737 0.546747 CCTCCACCCTTACACTCCCA 60.547 60.000 0.00 0.00 0.00 4.37
791 794 5.337009 GGAGTAGTTGATTCTTTGTCCCGTA 60.337 44.000 0.00 0.00 0.00 4.02
836 839 2.241176 CTGGTTAACCTCATTAGCCCCA 59.759 50.000 24.78 0.00 42.16 4.96
848 851 4.764143 GCCCCAACACTATTGGCT 57.236 55.556 0.00 0.00 39.05 4.75
849 852 2.192605 GCCCCAACACTATTGGCTG 58.807 57.895 0.00 0.00 39.05 4.85
850 853 1.948721 GCCCCAACACTATTGGCTGC 61.949 60.000 0.00 0.00 39.05 5.25
851 854 0.323725 CCCCAACACTATTGGCTGCT 60.324 55.000 0.00 0.00 38.23 4.24
852 855 0.813184 CCCAACACTATTGGCTGCTG 59.187 55.000 0.00 0.00 38.23 4.41
853 856 1.538047 CCAACACTATTGGCTGCTGT 58.462 50.000 0.00 0.00 32.18 4.40
854 857 1.888512 CCAACACTATTGGCTGCTGTT 59.111 47.619 0.00 0.00 32.18 3.16
855 858 2.095059 CCAACACTATTGGCTGCTGTTC 60.095 50.000 0.00 0.00 32.18 3.18
856 859 2.816087 CAACACTATTGGCTGCTGTTCT 59.184 45.455 0.00 0.00 0.00 3.01
857 860 3.146104 ACACTATTGGCTGCTGTTCTT 57.854 42.857 0.00 0.00 0.00 2.52
858 861 3.490348 ACACTATTGGCTGCTGTTCTTT 58.510 40.909 0.00 0.00 0.00 2.52
859 862 4.651778 ACACTATTGGCTGCTGTTCTTTA 58.348 39.130 0.00 0.00 0.00 1.85
860 863 5.070001 ACACTATTGGCTGCTGTTCTTTAA 58.930 37.500 0.00 0.00 0.00 1.52
861 864 5.048713 ACACTATTGGCTGCTGTTCTTTAAC 60.049 40.000 0.00 0.00 36.07 2.01
862 865 5.048782 CACTATTGGCTGCTGTTCTTTAACA 60.049 40.000 0.00 0.00 43.32 2.41
874 877 5.365619 TGTTCTTTAACAGAGACACCTTCC 58.634 41.667 0.00 0.00 40.69 3.46
875 878 5.130477 TGTTCTTTAACAGAGACACCTTCCT 59.870 40.000 0.00 0.00 40.69 3.36
876 879 5.888982 TCTTTAACAGAGACACCTTCCTT 57.111 39.130 0.00 0.00 0.00 3.36
877 880 6.248569 TCTTTAACAGAGACACCTTCCTTT 57.751 37.500 0.00 0.00 0.00 3.11
878 881 6.659824 TCTTTAACAGAGACACCTTCCTTTT 58.340 36.000 0.00 0.00 0.00 2.27
879 882 7.116736 TCTTTAACAGAGACACCTTCCTTTTT 58.883 34.615 0.00 0.00 0.00 1.94
918 921 2.365582 CTAATTAGCACTTTGGGCCGT 58.634 47.619 0.00 0.00 0.00 5.68
919 922 0.887933 AATTAGCACTTTGGGCCGTG 59.112 50.000 0.00 1.85 0.00 4.94
920 923 0.037590 ATTAGCACTTTGGGCCGTGA 59.962 50.000 13.39 0.00 33.04 4.35
921 924 0.037590 TTAGCACTTTGGGCCGTGAT 59.962 50.000 13.39 9.76 33.87 3.06
922 925 0.037590 TAGCACTTTGGGCCGTGATT 59.962 50.000 13.39 4.08 31.54 2.57
923 926 0.827507 AGCACTTTGGGCCGTGATTT 60.828 50.000 13.39 0.00 33.04 2.17
924 927 0.388520 GCACTTTGGGCCGTGATTTC 60.389 55.000 13.39 0.00 33.04 2.17
925 928 1.247567 CACTTTGGGCCGTGATTTCT 58.752 50.000 4.21 0.00 33.04 2.52
926 929 1.613437 CACTTTGGGCCGTGATTTCTT 59.387 47.619 4.21 0.00 33.04 2.52
927 930 1.886542 ACTTTGGGCCGTGATTTCTTC 59.113 47.619 0.00 0.00 0.00 2.87
928 931 1.885887 CTTTGGGCCGTGATTTCTTCA 59.114 47.619 0.00 0.00 0.00 3.02
929 932 1.533625 TTGGGCCGTGATTTCTTCAG 58.466 50.000 0.00 0.00 34.17 3.02
930 933 0.400213 TGGGCCGTGATTTCTTCAGT 59.600 50.000 0.00 0.00 34.17 3.41
931 934 1.626321 TGGGCCGTGATTTCTTCAGTA 59.374 47.619 0.00 0.00 34.17 2.74
932 935 2.238646 TGGGCCGTGATTTCTTCAGTAT 59.761 45.455 0.00 0.00 34.17 2.12
933 936 3.452990 TGGGCCGTGATTTCTTCAGTATA 59.547 43.478 0.00 0.00 34.17 1.47
1459 1529 4.292178 CGAGAGATGAGGGGCGCC 62.292 72.222 21.18 21.18 0.00 6.53
1474 1544 3.017581 GCCCCCTGATCAGTGGGT 61.018 66.667 35.16 0.00 46.42 4.51
1534 1604 2.016905 AGCCTTGACAGTGGTAGACT 57.983 50.000 0.00 0.00 34.02 3.24
1610 1680 2.431057 GAGTATGGGGTGATGTCGTCTT 59.569 50.000 0.00 0.00 0.00 3.01
1639 1709 0.322816 TCCATCCAAGGCTTCTGTGC 60.323 55.000 0.00 0.00 0.00 4.57
1663 1748 5.047847 GCACGCTGGTTATTACAGATAAGA 58.952 41.667 0.00 0.00 38.20 2.10
1704 1789 4.836125 TTCTCTTTACTGGCTGCTTTTG 57.164 40.909 0.00 0.00 0.00 2.44
1722 1807 4.840716 TTTGGGGAATTTGGATGGATTG 57.159 40.909 0.00 0.00 0.00 2.67
1817 1902 3.480505 TGATATCTGTGTGATGCAGGG 57.519 47.619 3.98 0.00 36.65 4.45
1997 2082 1.475392 CGTTGTGGTACTGGGGTTTGA 60.475 52.381 0.00 0.00 0.00 2.69
2020 2105 3.244875 TGAGGACAATAATGTGGTGTGCT 60.245 43.478 0.00 0.00 45.28 4.40
2114 2289 4.599047 TCATTTTTGGTTGTCACCCATC 57.401 40.909 0.00 0.00 43.49 3.51
2147 2322 4.428294 ACACTGCAGGTAATATCATGCT 57.572 40.909 19.93 0.00 43.99 3.79
2202 2384 3.192422 TGTTCAATAATTGGTTGGCGGAG 59.808 43.478 5.81 0.00 0.00 4.63
2435 2848 2.259505 GCTGTCAGCTTCATTTCTGC 57.740 50.000 17.89 0.00 38.45 4.26
2619 3065 6.153851 TGGTAGTTTTAGTGCATAGCTACAGA 59.846 38.462 0.00 0.00 31.73 3.41
2677 3123 0.110486 TTGGAGGTGGAGGTTGAAGC 59.890 55.000 0.00 0.00 0.00 3.86
2732 6519 7.665559 ACTGAAATGTCAAATAGGTAGCTCAAA 59.334 33.333 0.00 0.00 31.88 2.69
2907 6728 7.412853 TTTGTACCAGGGGCTAAATTTATTC 57.587 36.000 0.00 0.00 0.00 1.75
2959 6780 9.638239 TTGATCACTTTTATTGCTATGGTTTTC 57.362 29.630 0.00 0.00 0.00 2.29
3084 6906 3.698029 ATTTATTCCGATGTGCAGTGC 57.302 42.857 8.58 8.58 0.00 4.40
3103 6925 6.976925 GCAGTGCAATGAGCTTAATTATTCTT 59.023 34.615 20.00 0.00 45.94 2.52
3141 6970 2.619177 TGACCAGCTAATAGTCTCGAGC 59.381 50.000 7.81 2.90 35.07 5.03
3150 6979 0.378610 TAGTCTCGAGCGTGCATCTG 59.621 55.000 7.81 0.00 0.00 2.90
3324 7153 5.808366 TGATGCCTCCTCGTATCTATTTT 57.192 39.130 0.00 0.00 0.00 1.82
3373 7202 8.621532 TTGCTTGACTTGATTACTTCTTATGT 57.378 30.769 0.00 0.00 0.00 2.29
3399 7228 1.613437 GAAACAGACATTGGTGGTGGG 59.387 52.381 0.00 0.00 0.00 4.61
3495 7324 5.207110 TGAGCAGGTAAGCATATCTTCTC 57.793 43.478 2.43 2.43 34.32 2.87
3504 7333 7.236432 AGGTAAGCATATCTTCTCCATGTATGT 59.764 37.037 0.00 0.00 36.25 2.29
3604 7441 2.104281 ACTAAGACGTTTCCTGCTTGGT 59.896 45.455 0.00 0.00 37.07 3.67
3611 7448 0.110486 TTTCCTGCTTGGTCACCTCC 59.890 55.000 0.00 0.00 37.07 4.30
3633 7470 3.830192 CCGCTTTCATGGCAGGCC 61.830 66.667 2.62 2.62 0.00 5.19
3660 7497 2.286935 TTATCTTTCCTCCAGGCCCT 57.713 50.000 0.00 0.00 34.44 5.19
3676 7513 2.021208 GCCCTGCTTCCTCATCCTTTC 61.021 57.143 0.00 0.00 0.00 2.62
3677 7514 1.283029 CCCTGCTTCCTCATCCTTTCA 59.717 52.381 0.00 0.00 0.00 2.69
3681 7518 2.291089 TGCTTCCTCATCCTTTCATGCA 60.291 45.455 0.00 0.00 0.00 3.96
3694 7531 2.836479 TCATGCATTCATCAGCAACG 57.164 45.000 0.00 0.00 44.88 4.10
3711 7548 3.625764 GCAACGCTATATTCCCTTTCACA 59.374 43.478 0.00 0.00 0.00 3.58
3727 7568 0.327924 CACATGCCTTCACCCACCTA 59.672 55.000 0.00 0.00 0.00 3.08
3739 7580 6.719829 CCTTCACCCACCTACTCTTTTATTTT 59.280 38.462 0.00 0.00 0.00 1.82
3740 7581 7.309194 CCTTCACCCACCTACTCTTTTATTTTG 60.309 40.741 0.00 0.00 0.00 2.44
3770 7612 1.559682 ACGCCCTCACTATTGGATGTT 59.440 47.619 0.00 0.00 0.00 2.71
3771 7613 2.026262 ACGCCCTCACTATTGGATGTTT 60.026 45.455 0.00 0.00 0.00 2.83
3772 7614 2.355756 CGCCCTCACTATTGGATGTTTG 59.644 50.000 0.00 0.00 0.00 2.93
3774 7616 2.689983 CCCTCACTATTGGATGTTTGCC 59.310 50.000 0.00 0.00 0.00 4.52
3777 7619 4.096984 CCTCACTATTGGATGTTTGCCTTC 59.903 45.833 0.00 0.00 0.00 3.46
3779 7621 3.689161 CACTATTGGATGTTTGCCTTCGA 59.311 43.478 0.00 0.00 0.00 3.71
3824 7676 7.361286 GCTTTCAGTTACCACCTTAATTCTCAG 60.361 40.741 0.00 0.00 0.00 3.35
3861 7713 6.015350 TGTTAGTGTAGTTTCTTCTCCCTCTG 60.015 42.308 0.00 0.00 0.00 3.35
3868 7720 0.032615 TCTTCTCCCTCTGGCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
3903 7755 0.105913 TTGGGACCCTTCCGCTTTTT 60.106 50.000 13.00 0.00 43.94 1.94
3904 7756 0.825840 TGGGACCCTTCCGCTTTTTG 60.826 55.000 13.00 0.00 43.94 2.44
3905 7757 0.826256 GGGACCCTTCCGCTTTTTGT 60.826 55.000 2.09 0.00 43.94 2.83
3906 7758 0.313987 GGACCCTTCCGCTTTTTGTG 59.686 55.000 0.00 0.00 29.98 3.33
3907 7759 0.318699 GACCCTTCCGCTTTTTGTGC 60.319 55.000 0.00 0.00 0.00 4.57
3908 7760 1.040339 ACCCTTCCGCTTTTTGTGCA 61.040 50.000 0.00 0.00 0.00 4.57
3909 7761 0.318120 CCCTTCCGCTTTTTGTGCAT 59.682 50.000 0.00 0.00 0.00 3.96
3910 7762 1.543802 CCCTTCCGCTTTTTGTGCATA 59.456 47.619 0.00 0.00 0.00 3.14
3911 7763 2.166254 CCCTTCCGCTTTTTGTGCATAT 59.834 45.455 0.00 0.00 0.00 1.78
3912 7764 3.181397 CCTTCCGCTTTTTGTGCATATG 58.819 45.455 0.00 0.00 0.00 1.78
3913 7765 3.367292 CCTTCCGCTTTTTGTGCATATGT 60.367 43.478 4.29 0.00 0.00 2.29
3914 7766 3.932545 TCCGCTTTTTGTGCATATGTT 57.067 38.095 4.29 0.00 0.00 2.71
3915 7767 5.378292 TTCCGCTTTTTGTGCATATGTTA 57.622 34.783 4.29 0.00 0.00 2.41
3916 7768 5.378292 TCCGCTTTTTGTGCATATGTTAA 57.622 34.783 4.29 0.00 0.00 2.01
3917 7769 5.773575 TCCGCTTTTTGTGCATATGTTAAA 58.226 33.333 4.29 1.35 0.00 1.52
3918 7770 6.393990 TCCGCTTTTTGTGCATATGTTAAAT 58.606 32.000 4.29 0.00 0.00 1.40
3919 7771 6.309980 TCCGCTTTTTGTGCATATGTTAAATG 59.690 34.615 4.29 4.26 0.00 2.32
3920 7772 6.090628 CCGCTTTTTGTGCATATGTTAAATGT 59.909 34.615 4.29 0.00 0.00 2.71
3921 7773 7.359933 CCGCTTTTTGTGCATATGTTAAATGTT 60.360 33.333 4.29 0.00 0.00 2.71
3922 7774 8.642885 CGCTTTTTGTGCATATGTTAAATGTTA 58.357 29.630 4.29 0.00 0.00 2.41
3923 7775 9.956797 GCTTTTTGTGCATATGTTAAATGTTAG 57.043 29.630 4.29 2.16 0.00 2.34
3924 7776 9.956797 CTTTTTGTGCATATGTTAAATGTTAGC 57.043 29.630 4.29 0.00 0.00 3.09
3925 7777 9.481340 TTTTTGTGCATATGTTAAATGTTAGCA 57.519 25.926 4.29 0.00 0.00 3.49
3926 7778 9.650539 TTTTGTGCATATGTTAAATGTTAGCAT 57.349 25.926 4.29 3.38 36.80 3.79
3976 7828 2.162208 TGAAATGCATCCTCTTTCGTGC 59.838 45.455 0.00 0.00 38.05 5.34
4009 7863 9.602568 TTTGATTTCCTTTTTGTTTTACTACCC 57.397 29.630 0.00 0.00 0.00 3.69
4010 7864 8.541899 TGATTTCCTTTTTGTTTTACTACCCT 57.458 30.769 0.00 0.00 0.00 4.34
4060 7914 4.411869 TGGGGTTATGCATCTATCAAGTCA 59.588 41.667 0.19 0.00 0.00 3.41
4097 7951 5.392767 TGTTGTTTCCTTTGTGCAAGTAA 57.607 34.783 0.00 0.00 0.00 2.24
4098 7952 5.164954 TGTTGTTTCCTTTGTGCAAGTAAC 58.835 37.500 0.00 0.00 0.00 2.50
4137 7991 5.521010 ACATGAACATTTGCTTCACACTTTG 59.479 36.000 0.00 0.00 30.46 2.77
4145 7999 8.945057 ACATTTGCTTCACACTTTGTTTAAATT 58.055 25.926 0.00 0.00 0.00 1.82
4334 8190 3.003897 GTGATGGTCGGTTTGCTTAAACA 59.996 43.478 5.41 0.00 34.46 2.83
4349 8205 5.884232 TGCTTAAACAATCAGCATCTCTCAT 59.116 36.000 0.00 0.00 38.65 2.90
4382 8238 5.874897 ATTTGCATATGTAATTGGCCACT 57.125 34.783 3.88 0.00 0.00 4.00
4429 8285 6.334202 GTCCAAGGTATATGTAGCTATGCTC 58.666 44.000 1.31 0.00 40.44 4.26
4430 8286 6.153680 GTCCAAGGTATATGTAGCTATGCTCT 59.846 42.308 1.31 0.00 40.44 4.09
4431 8287 6.153510 TCCAAGGTATATGTAGCTATGCTCTG 59.846 42.308 1.31 0.00 40.44 3.35
4432 8288 6.071108 CCAAGGTATATGTAGCTATGCTCTGT 60.071 42.308 1.31 0.00 40.44 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.107945 TTGATCATACCTCGGCGTCA 58.892 50.000 6.85 0.00 0.00 4.35
14 15 6.018589 TCTGAGCTAATTGATCATACCTCG 57.981 41.667 0.00 0.00 40.58 4.63
17 18 8.925161 GAGTATCTGAGCTAATTGATCATACC 57.075 38.462 0.00 0.00 40.58 2.73
38 39 0.400213 CAAACCCACCAGGCAGAGTA 59.600 55.000 0.00 0.00 40.58 2.59
79 80 2.066393 CCGAGGGAGGAGATGCCAA 61.066 63.158 0.00 0.00 43.31 4.52
81 82 3.237741 CCCGAGGGAGGAGATGCC 61.238 72.222 0.84 0.00 40.48 4.40
121 122 3.762407 TCGGGAATGAAGAGACAACAA 57.238 42.857 0.00 0.00 0.00 2.83
162 163 6.343716 AGTTGATGGCAGAGATATACTGAG 57.656 41.667 11.91 0.00 37.54 3.35
179 180 1.078426 GTGGCGGGCTGTAGTTGAT 60.078 57.895 2.38 0.00 0.00 2.57
209 210 0.034089 AAGCTAATCTGGGTGGCCAC 60.034 55.000 28.57 28.57 0.00 5.01
215 216 8.938883 TCTGATATTTTAGAAGCTAATCTGGGT 58.061 33.333 0.00 0.00 0.00 4.51
249 250 6.687647 GCCAGAATCCTTAGAAGCATCTACTT 60.688 42.308 0.00 0.00 37.88 2.24
280 281 1.633432 TGTTGCAGCACCCTAATACCT 59.367 47.619 0.00 0.00 0.00 3.08
352 353 2.300437 GGAATGGGAGGTCTAGGATTCG 59.700 54.545 0.00 0.00 0.00 3.34
361 362 1.894699 ACCTAAGGGAATGGGAGGTC 58.105 55.000 0.00 0.00 35.57 3.85
365 366 2.307686 GACACAACCTAAGGGAATGGGA 59.692 50.000 1.52 0.00 33.16 4.37
374 375 4.202101 TGGCAAACAATGACACAACCTAAG 60.202 41.667 0.00 0.00 44.10 2.18
425 426 3.437642 TTGGTGGGGAAGCAAAGAG 57.562 52.632 0.00 0.00 43.13 2.85
434 436 3.399644 TGATAAGGAAGTTTTGGTGGGGA 59.600 43.478 0.00 0.00 0.00 4.81
467 469 1.270252 CCAATGGGCCTTTGTGAACAC 60.270 52.381 25.27 0.00 0.00 3.32
476 478 3.007940 GCTTTAAACTTCCAATGGGCCTT 59.992 43.478 4.53 0.00 0.00 4.35
483 485 7.175104 TCTATGTCCTGCTTTAAACTTCCAAT 58.825 34.615 0.00 0.00 0.00 3.16
488 490 7.604545 GTCTTCTCTATGTCCTGCTTTAAACTT 59.395 37.037 0.00 0.00 0.00 2.66
500 502 2.763448 AGTGCCTGTCTTCTCTATGTCC 59.237 50.000 0.00 0.00 0.00 4.02
506 508 1.055040 AAGCAGTGCCTGTCTTCTCT 58.945 50.000 12.58 0.00 33.43 3.10
534 537 4.224594 GGGTAAGGAGGTGCTAGTTAAAGT 59.775 45.833 0.00 0.00 0.00 2.66
602 605 6.926630 TTTAAGTACCTAAAGGACCGGTTA 57.073 37.500 9.42 0.00 38.94 2.85
629 632 4.306600 ACATTGGAAATTCAAAGAACGGC 58.693 39.130 0.00 0.00 0.00 5.68
650 653 0.322546 ACCTTGGAATGCCTTCGGAC 60.323 55.000 0.00 0.00 34.31 4.79
653 656 3.947834 AGAAATACCTTGGAATGCCTTCG 59.052 43.478 0.00 0.00 34.31 3.79
656 659 4.591321 TGAGAAATACCTTGGAATGCCT 57.409 40.909 0.00 0.00 34.31 4.75
668 671 8.197439 CCCAATGAAACCCTAAATGAGAAATAC 58.803 37.037 0.00 0.00 0.00 1.89
680 683 4.412060 AAATGTCCCCAATGAAACCCTA 57.588 40.909 0.00 0.00 0.00 3.53
683 686 5.476091 TGTTAAATGTCCCCAATGAAACC 57.524 39.130 0.00 0.00 0.00 3.27
695 698 8.974408 GTGGAGGTAAAATGTTTGTTAAATGTC 58.026 33.333 0.00 0.00 0.00 3.06
708 711 4.918588 AGTGTAAGGGTGGAGGTAAAATG 58.081 43.478 0.00 0.00 0.00 2.32
709 712 4.018688 GGAGTGTAAGGGTGGAGGTAAAAT 60.019 45.833 0.00 0.00 0.00 1.82
715 718 0.546747 TGGGAGTGTAAGGGTGGAGG 60.547 60.000 0.00 0.00 0.00 4.30
791 794 3.077359 GCTGAACACTTATTGTCAGGCT 58.923 45.455 0.00 0.00 37.51 4.58
836 839 3.146104 AGAACAGCAGCCAATAGTGTT 57.854 42.857 0.00 0.00 34.08 3.32
851 854 5.130477 AGGAAGGTGTCTCTGTTAAAGAACA 59.870 40.000 0.00 0.00 43.41 3.18
852 855 5.612351 AGGAAGGTGTCTCTGTTAAAGAAC 58.388 41.667 0.00 0.00 33.37 3.01
853 856 5.888982 AGGAAGGTGTCTCTGTTAAAGAA 57.111 39.130 0.00 0.00 33.37 2.52
854 857 5.888982 AAGGAAGGTGTCTCTGTTAAAGA 57.111 39.130 0.00 0.00 0.00 2.52
855 858 6.944234 AAAAGGAAGGTGTCTCTGTTAAAG 57.056 37.500 0.00 0.00 0.00 1.85
898 901 2.097466 CACGGCCCAAAGTGCTAATTAG 59.903 50.000 8.20 8.20 0.00 1.73
899 902 2.088423 CACGGCCCAAAGTGCTAATTA 58.912 47.619 0.00 0.00 0.00 1.40
900 903 0.887933 CACGGCCCAAAGTGCTAATT 59.112 50.000 0.00 0.00 0.00 1.40
901 904 0.037590 TCACGGCCCAAAGTGCTAAT 59.962 50.000 0.00 0.00 38.19 1.73
902 905 0.037590 ATCACGGCCCAAAGTGCTAA 59.962 50.000 0.00 0.00 38.19 3.09
903 906 0.037590 AATCACGGCCCAAAGTGCTA 59.962 50.000 0.00 0.00 38.19 3.49
904 907 0.827507 AAATCACGGCCCAAAGTGCT 60.828 50.000 0.00 0.00 38.19 4.40
905 908 0.388520 GAAATCACGGCCCAAAGTGC 60.389 55.000 0.00 0.00 38.19 4.40
906 909 1.247567 AGAAATCACGGCCCAAAGTG 58.752 50.000 0.00 0.00 39.55 3.16
907 910 1.886542 GAAGAAATCACGGCCCAAAGT 59.113 47.619 0.00 0.00 0.00 2.66
908 911 1.885887 TGAAGAAATCACGGCCCAAAG 59.114 47.619 0.00 0.00 31.50 2.77
909 912 1.885887 CTGAAGAAATCACGGCCCAAA 59.114 47.619 0.00 0.00 33.47 3.28
910 913 1.202879 ACTGAAGAAATCACGGCCCAA 60.203 47.619 0.00 0.00 33.47 4.12
911 914 0.400213 ACTGAAGAAATCACGGCCCA 59.600 50.000 0.00 0.00 33.47 5.36
912 915 2.396590 TACTGAAGAAATCACGGCCC 57.603 50.000 0.00 0.00 33.47 5.80
913 916 5.116882 AGTTATACTGAAGAAATCACGGCC 58.883 41.667 0.00 0.00 33.47 6.13
914 917 6.663944 AAGTTATACTGAAGAAATCACGGC 57.336 37.500 0.00 0.00 33.47 5.68
915 918 7.414098 CCCAAAGTTATACTGAAGAAATCACGG 60.414 40.741 0.00 0.00 33.47 4.94
916 919 7.464358 CCCAAAGTTATACTGAAGAAATCACG 58.536 38.462 0.00 0.00 33.47 4.35
917 920 7.121315 AGCCCAAAGTTATACTGAAGAAATCAC 59.879 37.037 0.00 0.00 33.47 3.06
918 921 7.121168 CAGCCCAAAGTTATACTGAAGAAATCA 59.879 37.037 0.00 0.00 36.38 2.57
919 922 7.475840 CAGCCCAAAGTTATACTGAAGAAATC 58.524 38.462 0.00 0.00 0.00 2.17
920 923 6.127619 GCAGCCCAAAGTTATACTGAAGAAAT 60.128 38.462 0.00 0.00 0.00 2.17
921 924 5.183140 GCAGCCCAAAGTTATACTGAAGAAA 59.817 40.000 0.00 0.00 0.00 2.52
922 925 4.700213 GCAGCCCAAAGTTATACTGAAGAA 59.300 41.667 0.00 0.00 0.00 2.52
923 926 4.261801 GCAGCCCAAAGTTATACTGAAGA 58.738 43.478 0.00 0.00 0.00 2.87
924 927 3.378427 GGCAGCCCAAAGTTATACTGAAG 59.622 47.826 0.00 0.00 0.00 3.02
925 928 3.010138 AGGCAGCCCAAAGTTATACTGAA 59.990 43.478 8.22 0.00 0.00 3.02
926 929 2.576191 AGGCAGCCCAAAGTTATACTGA 59.424 45.455 8.22 0.00 0.00 3.41
927 930 2.684881 CAGGCAGCCCAAAGTTATACTG 59.315 50.000 8.22 0.00 0.00 2.74
928 931 2.945890 GCAGGCAGCCCAAAGTTATACT 60.946 50.000 8.22 0.00 37.23 2.12
929 932 1.405463 GCAGGCAGCCCAAAGTTATAC 59.595 52.381 8.22 0.00 37.23 1.47
930 933 1.762708 GCAGGCAGCCCAAAGTTATA 58.237 50.000 8.22 0.00 37.23 0.98
931 934 2.583472 GCAGGCAGCCCAAAGTTAT 58.417 52.632 8.22 0.00 37.23 1.89
932 935 4.095590 GCAGGCAGCCCAAAGTTA 57.904 55.556 8.22 0.00 37.23 2.24
952 956 1.374758 GTGGTGGAGTCGAAGCAGG 60.375 63.158 0.00 0.00 0.00 4.85
1436 1503 0.539051 CCCCTCATCTCTCGCAAACT 59.461 55.000 0.00 0.00 0.00 2.66
1534 1604 3.119065 TGTCTGTGTTGTTTGTCCTCGTA 60.119 43.478 0.00 0.00 0.00 3.43
1610 1680 0.321564 CTTGGATGGAAGCGGTGTCA 60.322 55.000 0.00 0.00 0.00 3.58
1639 1709 1.635844 TCTGTAATAACCAGCGTGCG 58.364 50.000 0.00 0.00 0.00 5.34
1663 1748 4.988598 CCGAACCAGCACAGCGGT 62.989 66.667 0.00 0.00 37.13 5.68
1704 1789 2.103601 CAGCAATCCATCCAAATTCCCC 59.896 50.000 0.00 0.00 0.00 4.81
1722 1807 2.751806 CCTCTCCAAATCAAACTCCAGC 59.248 50.000 0.00 0.00 0.00 4.85
1817 1902 1.208293 GACCAAGACCACCATCCTCTC 59.792 57.143 0.00 0.00 0.00 3.20
1879 1964 4.081198 ACCATGACAATCAGACTTCCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
1888 1973 3.144657 AGCAACACCATGACAATCAGA 57.855 42.857 0.00 0.00 0.00 3.27
1997 2082 3.696051 GCACACCACATTATTGTCCTCAT 59.304 43.478 0.00 0.00 32.34 2.90
2102 2277 1.535462 CACTTTCGGATGGGTGACAAC 59.465 52.381 0.00 0.00 32.12 3.32
2141 2316 5.999205 AAACCCAATATGTGAAAGCATGA 57.001 34.783 0.00 0.00 0.00 3.07
2202 2384 1.401539 GGCAAAAGGATGTGAGCGAAC 60.402 52.381 0.00 0.00 0.00 3.95
2249 2434 7.549147 AGTAGTAAAGAAACAGGTGGTATGA 57.451 36.000 0.00 0.00 0.00 2.15
2250 2435 7.876068 TCAAGTAGTAAAGAAACAGGTGGTATG 59.124 37.037 0.00 0.00 0.00 2.39
2307 2699 9.739276 ACAAGAATCAGAACAGGAATATTACAA 57.261 29.630 0.00 0.00 0.00 2.41
2505 2945 4.084433 CCAATCTTGGCGTTCATTGTTTTG 60.084 41.667 0.00 0.00 42.21 2.44
2642 3088 6.043243 CCACCTCCAACTACCATGTATCTTAT 59.957 42.308 0.00 0.00 0.00 1.73
2643 3089 5.365605 CCACCTCCAACTACCATGTATCTTA 59.634 44.000 0.00 0.00 0.00 2.10
2644 3090 4.164221 CCACCTCCAACTACCATGTATCTT 59.836 45.833 0.00 0.00 0.00 2.40
2677 3123 5.296780 TCAAGCAAGTTTCTCAAGTAGTTGG 59.703 40.000 10.39 1.96 34.09 3.77
2732 6519 5.412904 GCTTGAAGCTTCTAACTGTACCAAT 59.587 40.000 26.09 0.00 38.45 3.16
2791 6578 7.011109 GGCTGAATTTAGTAGCGAGATTAACAA 59.989 37.037 0.00 0.00 38.31 2.83
2801 6588 5.617751 GCAATATGGGCTGAATTTAGTAGCG 60.618 44.000 0.00 0.00 38.31 4.26
3080 6902 8.284945 TCAAGAATAATTAAGCTCATTGCACT 57.715 30.769 0.00 0.00 45.94 4.40
3103 6925 3.582647 TGGTCAGAAGAGGCAAGTTATCA 59.417 43.478 0.00 0.00 0.00 2.15
3141 6970 5.393124 TCTTAAAAATGAAGCAGATGCACG 58.607 37.500 7.68 0.00 45.16 5.34
3347 7176 9.236006 ACATAAGAAGTAATCAAGTCAAGCAAT 57.764 29.630 0.00 0.00 0.00 3.56
3373 7202 5.067153 CACCACCAATGTCTGTTTCTACAAA 59.933 40.000 0.00 0.00 32.92 2.83
3377 7206 3.497763 CCCACCACCAATGTCTGTTTCTA 60.498 47.826 0.00 0.00 0.00 2.10
3399 7228 3.628646 AAGACCAGCCCCATCGTGC 62.629 63.158 0.00 0.00 0.00 5.34
3495 7324 5.070981 AGTCCAGATACCTCAACATACATGG 59.929 44.000 0.00 0.00 0.00 3.66
3567 7404 6.183360 ACGTCTTAGTCCTCGCTTATAATTGT 60.183 38.462 0.00 0.00 0.00 2.71
3590 7427 0.535102 AGGTGACCAAGCAGGAAACG 60.535 55.000 3.63 0.00 41.22 3.60
3604 7441 1.120530 GAAAGCGGGATAGGAGGTGA 58.879 55.000 0.00 0.00 0.00 4.02
3611 7448 1.233019 CTGCCATGAAAGCGGGATAG 58.767 55.000 0.00 0.00 32.74 2.08
3650 7487 3.013932 AGGAAGCAGGGCCTGGAG 61.014 66.667 33.43 10.52 32.06 3.86
3660 7497 2.291089 TGCATGAAAGGATGAGGAAGCA 60.291 45.455 0.00 0.00 0.00 3.91
3676 7513 1.197055 GCGTTGCTGATGAATGCATG 58.803 50.000 0.00 0.00 39.07 4.06
3677 7514 1.100510 AGCGTTGCTGATGAATGCAT 58.899 45.000 0.00 0.00 37.57 3.96
3681 7518 4.697352 GGGAATATAGCGTTGCTGATGAAT 59.303 41.667 0.70 0.00 40.10 2.57
3694 7531 4.401925 AGGCATGTGAAAGGGAATATAGC 58.598 43.478 0.00 0.00 0.00 2.97
3711 7548 0.912486 GAGTAGGTGGGTGAAGGCAT 59.088 55.000 0.00 0.00 0.00 4.40
3727 7568 7.589954 GCGTACAACATCACAAAATAAAAGAGT 59.410 33.333 0.00 0.00 0.00 3.24
3739 7580 0.682292 TGAGGGCGTACAACATCACA 59.318 50.000 0.00 0.00 0.00 3.58
3740 7581 1.076332 GTGAGGGCGTACAACATCAC 58.924 55.000 13.45 13.45 0.00 3.06
3770 7612 2.290260 ACTGGATGAACATCGAAGGCAA 60.290 45.455 15.41 0.00 38.69 4.52
3771 7613 1.278985 ACTGGATGAACATCGAAGGCA 59.721 47.619 15.41 0.00 38.69 4.75
3772 7614 2.029838 ACTGGATGAACATCGAAGGC 57.970 50.000 15.41 2.71 38.69 4.35
3774 7616 2.096496 GGCAACTGGATGAACATCGAAG 59.904 50.000 8.41 10.31 38.69 3.79
3824 7676 3.127425 ACACTAACAGAAGGAACCAGC 57.873 47.619 0.00 0.00 0.00 4.85
3868 7720 3.937706 GTCCCAAGTCATCAGTTCATCTG 59.062 47.826 0.00 0.00 44.85 2.90
3887 7739 0.313987 CACAAAAAGCGGAAGGGTCC 59.686 55.000 0.00 0.00 41.01 4.46
3976 7828 7.486802 AACAAAAAGGAAATCAAATGCAGAG 57.513 32.000 0.00 0.00 0.00 3.35
4078 7932 5.652994 AAGTTACTTGCACAAAGGAAACA 57.347 34.783 0.00 0.00 40.54 2.83
4137 7991 8.986477 AATGACAGTCATAAGCCAATTTAAAC 57.014 30.769 16.71 0.00 35.76 2.01
4145 7999 4.650734 TGTGAAATGACAGTCATAAGCCA 58.349 39.130 16.71 8.75 35.76 4.75
4296 8152 6.260714 CGACCATCACAAGAATTATGATCCAA 59.739 38.462 0.00 0.00 30.58 3.53
4317 8173 4.226761 CTGATTGTTTAAGCAAACCGACC 58.773 43.478 8.89 0.00 42.88 4.79
4334 8190 5.711506 AGATAGACGATGAGAGATGCTGATT 59.288 40.000 0.00 0.00 0.00 2.57
4382 8238 7.015292 GGACCAGACAAGATATGTTAGTGGATA 59.985 40.741 11.78 0.00 44.12 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.