Multiple sequence alignment - TraesCS6A01G076200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G076200 chr6A 100.000 5967 0 0 1 5967 46701587 46695621 0.000000e+00 11020.0
1 TraesCS6A01G076200 chr6A 85.615 3010 316 60 2019 4971 31753544 31750595 0.000000e+00 3051.0
2 TraesCS6A01G076200 chr6A 86.316 2682 273 43 2299 4924 32741295 32743938 0.000000e+00 2833.0
3 TraesCS6A01G076200 chr6A 86.744 2316 242 31 2763 5043 32812175 32809890 0.000000e+00 2516.0
4 TraesCS6A01G076200 chr6A 85.540 2289 255 35 2704 4959 32885599 32883354 0.000000e+00 2324.0
5 TraesCS6A01G076200 chr6A 91.569 854 64 4 2692 3545 45354263 45355108 0.000000e+00 1171.0
6 TraesCS6A01G076200 chr6A 88.123 783 58 13 4977 5733 32883461 32882688 0.000000e+00 898.0
7 TraesCS6A01G076200 chr6A 81.818 891 66 44 956 1809 32740081 32740912 0.000000e+00 660.0
8 TraesCS6A01G076200 chr6A 87.861 519 47 11 2118 2625 45353753 45354266 3.980000e-166 595.0
9 TraesCS6A01G076200 chr6A 78.357 767 73 44 956 1697 31754435 31753737 1.550000e-110 411.0
10 TraesCS6A01G076200 chr6A 92.444 225 13 1 1401 1621 45353532 45353756 9.650000e-83 318.0
11 TraesCS6A01G076200 chr6A 80.893 403 49 9 542 931 32887898 32887511 5.850000e-75 292.0
12 TraesCS6A01G076200 chr6A 83.041 342 37 12 4897 5219 32810091 32809752 2.100000e-74 291.0
13 TraesCS6A01G076200 chr6A 88.636 220 19 4 1874 2088 32740930 32741148 4.590000e-66 263.0
14 TraesCS6A01G076200 chr6A 78.522 433 63 17 501 932 32739303 32739706 2.130000e-64 257.0
15 TraesCS6A01G076200 chr6A 81.148 244 37 5 4975 5211 31750671 31750430 2.840000e-43 187.0
16 TraesCS6A01G076200 chr6A 97.531 81 2 0 4891 4971 46696617 46696537 8.060000e-29 139.0
17 TraesCS6A01G076200 chr6A 83.108 148 8 5 5472 5602 32744167 32744314 1.050000e-22 119.0
18 TraesCS6A01G076200 chrUn 93.842 4693 190 48 329 4971 27471173 27475816 0.000000e+00 6974.0
19 TraesCS6A01G076200 chrUn 91.686 854 66 2 2692 3545 137913395 137912547 0.000000e+00 1179.0
20 TraesCS6A01G076200 chrUn 93.346 511 18 5 5423 5920 27476218 27476725 0.000000e+00 741.0
21 TraesCS6A01G076200 chrUn 87.072 526 51 9 2118 2631 137913906 137913386 4.010000e-161 579.0
22 TraesCS6A01G076200 chrUn 81.086 534 45 30 956 1461 68355780 68356285 5.650000e-100 375.0
23 TraesCS6A01G076200 chrUn 83.411 428 34 9 523 929 312455230 312454819 4.400000e-96 363.0
24 TraesCS6A01G076200 chrUn 83.178 428 35 9 523 929 268238681 268239092 2.050000e-94 357.0
25 TraesCS6A01G076200 chrUn 95.455 220 10 0 4971 5190 27475736 27475955 9.510000e-93 351.0
26 TraesCS6A01G076200 chrUn 91.150 226 15 2 1401 1621 137914128 137913903 9.720000e-78 302.0
27 TraesCS6A01G076200 chrUn 82.632 380 29 9 523 881 371098326 371098689 9.720000e-78 302.0
28 TraesCS6A01G076200 chrUn 78.799 533 42 39 956 1461 268239308 268239796 5.850000e-75 292.0
29 TraesCS6A01G076200 chrUn 87.654 243 28 1 4977 5219 137911208 137910968 1.270000e-71 281.0
30 TraesCS6A01G076200 chr6B 94.867 4072 162 28 938 4971 79876076 79880138 0.000000e+00 6318.0
31 TraesCS6A01G076200 chr6B 86.413 2679 271 39 2299 4923 57417252 57419891 0.000000e+00 2844.0
32 TraesCS6A01G076200 chr6B 85.727 2319 250 34 2763 5043 57733690 57731415 0.000000e+00 2374.0
33 TraesCS6A01G076200 chr6B 84.283 2036 237 45 2988 4971 56378585 56376581 0.000000e+00 1910.0
34 TraesCS6A01G076200 chr6B 86.732 1741 155 31 1921 3643 56397846 56396164 0.000000e+00 1866.0
35 TraesCS6A01G076200 chr6B 85.097 1295 146 23 3633 4905 56396144 56394875 0.000000e+00 1279.0
36 TraesCS6A01G076200 chr6B 91.735 859 65 3 2692 3550 50409585 50408733 0.000000e+00 1188.0
37 TraesCS6A01G076200 chr6B 87.953 1021 83 17 1931 2943 56379682 56378694 0.000000e+00 1168.0
38 TraesCS6A01G076200 chr6B 92.551 792 30 7 4971 5733 79880058 79880849 0.000000e+00 1109.0
39 TraesCS6A01G076200 chr6B 81.557 938 73 46 956 1860 57416030 57416900 0.000000e+00 682.0
40 TraesCS6A01G076200 chr6B 87.856 527 36 12 415 931 79875393 79875901 1.430000e-165 593.0
41 TraesCS6A01G076200 chr6B 85.427 398 30 13 1878 2272 57416885 57417257 7.250000e-104 388.0
42 TraesCS6A01G076200 chr6B 83.261 460 23 20 1275 1697 56380283 56379841 2.030000e-99 374.0
43 TraesCS6A01G076200 chr6B 85.044 341 33 7 4897 5219 57731616 57731276 1.240000e-86 331.0
44 TraesCS6A01G076200 chr6B 81.114 413 62 11 497 898 57736997 57736590 3.470000e-82 316.0
45 TraesCS6A01G076200 chr6B 90.950 221 16 1 1401 1617 50410295 50410075 1.630000e-75 294.0
46 TraesCS6A01G076200 chr6B 87.654 243 28 1 4977 5219 50407381 50407141 1.270000e-71 281.0
47 TraesCS6A01G076200 chr6B 86.500 200 15 6 956 1150 56380526 56380334 6.060000e-50 209.0
48 TraesCS6A01G076200 chr6B 89.583 96 4 3 5511 5602 57420201 57420294 3.780000e-22 117.0
49 TraesCS6A01G076200 chr6D 86.756 2824 272 52 2202 4971 31269924 31267149 0.000000e+00 3049.0
50 TraesCS6A01G076200 chr6D 85.477 3009 310 60 2019 4959 31471540 31474489 0.000000e+00 3018.0
51 TraesCS6A01G076200 chr6D 86.650 2719 257 41 2299 4961 30097799 30095131 0.000000e+00 2913.0
52 TraesCS6A01G076200 chr6D 85.640 2319 247 35 2763 5043 29925581 29927851 0.000000e+00 2359.0
53 TraesCS6A01G076200 chr6D 85.253 2292 261 38 2704 4959 29851348 29853598 0.000000e+00 2289.0
54 TraesCS6A01G076200 chr6D 86.683 841 58 10 4977 5777 29853491 29854317 0.000000e+00 883.0
55 TraesCS6A01G076200 chr6D 82.380 874 76 34 1023 1860 31270884 31270053 0.000000e+00 689.0
56 TraesCS6A01G076200 chr6D 83.458 671 41 17 1222 1860 30098804 30098172 1.450000e-155 560.0
57 TraesCS6A01G076200 chr6D 90.909 396 33 3 1878 2272 30098187 30097794 4.100000e-146 529.0
58 TraesCS6A01G076200 chr6D 79.093 794 68 52 953 1697 31470569 31471313 1.960000e-124 457.0
59 TraesCS6A01G076200 chr6D 80.976 410 50 18 501 898 29922344 29922737 3.500000e-77 300.0
60 TraesCS6A01G076200 chr6D 82.353 340 41 11 4897 5219 29927650 29927987 1.640000e-70 278.0
61 TraesCS6A01G076200 chr6D 79.458 443 52 20 523 944 31469745 31470169 1.640000e-70 278.0
62 TraesCS6A01G076200 chr6D 87.629 194 16 5 956 1149 30099022 30098837 1.010000e-52 219.0
63 TraesCS6A01G076200 chr6D 88.701 177 20 0 4977 5153 30095240 30095064 3.620000e-52 217.0
64 TraesCS6A01G076200 chr6D 91.209 91 4 1 5516 5602 30094861 30094771 2.920000e-23 121.0
65 TraesCS6A01G076200 chr6D 93.056 72 5 0 1921 1992 31270040 31269969 8.180000e-19 106.0
66 TraesCS6A01G076200 chr2D 88.413 794 53 11 4971 5733 48567619 48568404 0.000000e+00 920.0
67 TraesCS6A01G076200 chr2D 81.458 960 73 43 956 1860 48562893 48563802 0.000000e+00 689.0
68 TraesCS6A01G076200 chr2D 80.796 427 49 14 523 931 48562286 48562697 2.700000e-78 303.0
69 TraesCS6A01G076200 chr2B 83.853 737 81 17 3619 4331 96277603 96278325 0.000000e+00 667.0
70 TraesCS6A01G076200 chr2B 85.841 452 29 13 1193 1611 13182933 13183382 1.180000e-121 448.0
71 TraesCS6A01G076200 chr5B 89.706 408 21 3 5337 5733 346850626 346851023 8.930000e-138 501.0
72 TraesCS6A01G076200 chr5B 86.364 418 35 9 523 931 664801345 664801749 2.550000e-118 436.0
73 TraesCS6A01G076200 chr5B 83.807 457 38 10 497 931 664892425 664892867 9.310000e-108 401.0
74 TraesCS6A01G076200 chr5B 83.333 426 37 18 526 930 664797839 664798251 4.400000e-96 363.0
75 TraesCS6A01G076200 chr5B 80.651 522 46 34 956 1461 664801963 664802445 2.650000e-93 353.0
76 TraesCS6A01G076200 chr4B 89.303 402 22 3 5343 5733 585761122 585760731 8.990000e-133 484.0
77 TraesCS6A01G076200 chr5A 85.417 432 32 12 523 931 655639705 655640128 2.570000e-113 420.0
78 TraesCS6A01G076200 chr5A 82.109 531 42 31 958 1461 655640332 655640836 7.200000e-109 405.0
79 TraesCS6A01G076200 chr5A 81.333 525 47 21 956 1460 655642276 655642769 4.360000e-101 379.0
80 TraesCS6A01G076200 chr5A 86.066 122 10 3 1234 1354 655875876 655875991 2.260000e-24 124.0
81 TraesCS6A01G076200 chr1A 96.610 177 6 0 5337 5513 198036089 198036265 1.630000e-75 294.0
82 TraesCS6A01G076200 chr1A 96.045 177 7 0 5337 5513 198058012 198058188 7.570000e-74 289.0
83 TraesCS6A01G076200 chr1A 88.554 166 19 0 5568 5733 198058281 198058446 1.010000e-47 202.0
84 TraesCS6A01G076200 chr3A 95.480 177 8 0 5337 5513 413470468 413470644 3.520000e-72 283.0
85 TraesCS6A01G076200 chr3A 92.025 163 13 0 5571 5733 176234686 176234524 4.650000e-56 230.0
86 TraesCS6A01G076200 chr7B 85.616 146 18 3 1649 1794 566839743 566839601 3.730000e-32 150.0
87 TraesCS6A01G076200 chr7D 84.314 102 12 4 1718 1819 529351646 529351549 4.920000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G076200 chr6A 46695621 46701587 5966 True 11020.000000 11020 100.000000 1 5967 1 chr6A.!!$R1 5966
1 TraesCS6A01G076200 chr6A 32809752 32812175 2423 True 1403.500000 2516 84.892500 2763 5219 2 chr6A.!!$R4 2456
2 TraesCS6A01G076200 chr6A 31750430 31754435 4005 True 1216.333333 3051 81.706667 956 5211 3 chr6A.!!$R3 4255
3 TraesCS6A01G076200 chr6A 32882688 32887898 5210 True 1171.333333 2324 84.852000 542 5733 3 chr6A.!!$R5 5191
4 TraesCS6A01G076200 chr6A 32739303 32744314 5011 False 826.400000 2833 83.680000 501 5602 5 chr6A.!!$F1 5101
5 TraesCS6A01G076200 chr6A 45353532 45355108 1576 False 694.666667 1171 90.624667 1401 3545 3 chr6A.!!$F2 2144
6 TraesCS6A01G076200 chrUn 27471173 27476725 5552 False 2688.666667 6974 94.214333 329 5920 3 chrUn.!!$F3 5591
7 TraesCS6A01G076200 chrUn 137910968 137914128 3160 True 585.250000 1179 89.390500 1401 5219 4 chrUn.!!$R2 3818
8 TraesCS6A01G076200 chrUn 68355780 68356285 505 False 375.000000 375 81.086000 956 1461 1 chrUn.!!$F1 505
9 TraesCS6A01G076200 chrUn 268238681 268239796 1115 False 324.500000 357 80.988500 523 1461 2 chrUn.!!$F4 938
10 TraesCS6A01G076200 chr6B 79875393 79880849 5456 False 2673.333333 6318 91.758000 415 5733 3 chr6B.!!$F2 5318
11 TraesCS6A01G076200 chr6B 56394875 56397846 2971 True 1572.500000 1866 85.914500 1921 4905 2 chr6B.!!$R3 2984
12 TraesCS6A01G076200 chr6B 57416030 57420294 4264 False 1007.750000 2844 85.745000 956 5602 4 chr6B.!!$F1 4646
13 TraesCS6A01G076200 chr6B 57731276 57736997 5721 True 1007.000000 2374 83.961667 497 5219 3 chr6B.!!$R4 4722
14 TraesCS6A01G076200 chr6B 56376581 56380526 3945 True 915.250000 1910 85.499250 956 4971 4 chr6B.!!$R2 4015
15 TraesCS6A01G076200 chr6B 50407141 50410295 3154 True 587.666667 1188 90.113000 1401 5219 3 chr6B.!!$R1 3818
16 TraesCS6A01G076200 chr6D 29851348 29854317 2969 False 1586.000000 2289 85.968000 2704 5777 2 chr6D.!!$F1 3073
17 TraesCS6A01G076200 chr6D 31267149 31270884 3735 True 1281.333333 3049 87.397333 1023 4971 3 chr6D.!!$R2 3948
18 TraesCS6A01G076200 chr6D 31469745 31474489 4744 False 1251.000000 3018 81.342667 523 4959 3 chr6D.!!$F3 4436
19 TraesCS6A01G076200 chr6D 29922344 29927987 5643 False 979.000000 2359 82.989667 501 5219 3 chr6D.!!$F2 4718
20 TraesCS6A01G076200 chr6D 30094771 30099022 4251 True 759.833333 2913 88.092667 956 5602 6 chr6D.!!$R1 4646
21 TraesCS6A01G076200 chr2D 48562286 48568404 6118 False 637.333333 920 83.555667 523 5733 3 chr2D.!!$F1 5210
22 TraesCS6A01G076200 chr2B 96277603 96278325 722 False 667.000000 667 83.853000 3619 4331 1 chr2B.!!$F2 712
23 TraesCS6A01G076200 chr5B 664797839 664802445 4606 False 384.000000 436 83.449333 523 1461 3 chr5B.!!$F3 938
24 TraesCS6A01G076200 chr5A 655639705 655642769 3064 False 401.333333 420 82.953000 523 1461 3 chr5A.!!$F2 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.037590 ACGCATTGGAGTTGGCCTTA 59.962 50.000 3.32 0.0 0.00 2.69 F
1244 5082 0.926293 TCTTGGGGTTGGGGATGATC 59.074 55.000 0.00 0.0 0.00 2.92 F
2504 10791 1.886542 AGAGGTTTCGCCATTTGGTTC 59.113 47.619 0.00 0.0 40.61 3.62 F
2856 11152 0.535102 AAGCACCAGGTTTGTCTCCG 60.535 55.000 0.00 0.0 29.59 4.63 F
4033 13160 0.612744 ACTGAAGCTTCTCAGGGAGC 59.387 55.000 26.09 0.0 46.02 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 9771 0.250295 ACGTGTGTACTGCTGCCAAT 60.250 50.000 0.00 0.0 0.00 3.16 R
2824 11120 1.210155 GTGCTTCACATGTTCCGGC 59.790 57.895 0.00 0.0 34.08 6.13 R
4249 13394 2.061509 TGGCATGCATTCAGCTACAT 57.938 45.000 21.36 0.0 45.94 2.29 R
4854 14065 0.536460 GGAAGCCCGGTGACTTGAAA 60.536 55.000 0.00 0.0 0.00 2.69 R
5758 15337 0.107456 AGCACCAGGTTGTGACTCAG 59.893 55.000 0.00 0.0 38.55 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.757227 CTAAAAAGGAGTAGTGATAGAAGATGG 57.243 37.037 0.00 0.00 0.00 3.51
33 34 7.979786 AAAAGGAGTAGTGATAGAAGATGGA 57.020 36.000 0.00 0.00 0.00 3.41
34 35 6.969993 AAGGAGTAGTGATAGAAGATGGAC 57.030 41.667 0.00 0.00 0.00 4.02
37 38 5.242838 GGAGTAGTGATAGAAGATGGACCAG 59.757 48.000 0.00 0.00 0.00 4.00
38 39 5.772004 AGTAGTGATAGAAGATGGACCAGT 58.228 41.667 0.00 0.00 0.00 4.00
39 40 6.912426 AGTAGTGATAGAAGATGGACCAGTA 58.088 40.000 0.00 0.00 0.00 2.74
42 43 5.596361 AGTGATAGAAGATGGACCAGTACTG 59.404 44.000 16.34 16.34 0.00 2.74
74 75 7.581213 CCTAACAGGCCATGTCATAATAAAA 57.419 36.000 5.01 0.00 43.00 1.52
75 76 7.651808 CCTAACAGGCCATGTCATAATAAAAG 58.348 38.462 5.01 0.00 43.00 2.27
77 78 9.337396 CTAACAGGCCATGTCATAATAAAAGTA 57.663 33.333 5.01 0.00 43.00 2.24
78 79 8.588290 AACAGGCCATGTCATAATAAAAGTAA 57.412 30.769 5.01 0.00 43.00 2.24
79 80 8.588290 ACAGGCCATGTCATAATAAAAGTAAA 57.412 30.769 5.01 0.00 37.75 2.01
80 81 8.686334 ACAGGCCATGTCATAATAAAAGTAAAG 58.314 33.333 5.01 0.00 37.75 1.85
81 82 7.649306 CAGGCCATGTCATAATAAAAGTAAAGC 59.351 37.037 5.01 0.00 0.00 3.51
84 85 7.433680 CCATGTCATAATAAAAGTAAAGCCCC 58.566 38.462 0.00 0.00 0.00 5.80
85 86 7.069331 CCATGTCATAATAAAAGTAAAGCCCCA 59.931 37.037 0.00 0.00 0.00 4.96
87 88 8.423906 TGTCATAATAAAAGTAAAGCCCCAAA 57.576 30.769 0.00 0.00 0.00 3.28
88 89 8.871125 TGTCATAATAAAAGTAAAGCCCCAAAA 58.129 29.630 0.00 0.00 0.00 2.44
89 90 9.366216 GTCATAATAAAAGTAAAGCCCCAAAAG 57.634 33.333 0.00 0.00 0.00 2.27
90 91 9.315363 TCATAATAAAAGTAAAGCCCCAAAAGA 57.685 29.630 0.00 0.00 0.00 2.52
91 92 9.936759 CATAATAAAAGTAAAGCCCCAAAAGAA 57.063 29.630 0.00 0.00 0.00 2.52
94 95 9.688091 AATAAAAGTAAAGCCCCAAAAGAAAAA 57.312 25.926 0.00 0.00 0.00 1.94
116 117 4.846779 AAACAGATAACACAAATGGCGT 57.153 36.364 0.00 0.00 0.00 5.68
118 119 2.095263 ACAGATAACACAAATGGCGTGC 60.095 45.455 0.00 0.00 37.93 5.34
119 120 1.130373 AGATAACACAAATGGCGTGCG 59.870 47.619 0.00 0.00 37.93 5.34
120 121 0.170116 ATAACACAAATGGCGTGCGG 59.830 50.000 0.00 0.00 37.93 5.69
121 122 0.885150 TAACACAAATGGCGTGCGGA 60.885 50.000 0.00 0.00 37.93 5.54
122 123 1.729470 AACACAAATGGCGTGCGGAA 61.729 50.000 0.00 0.00 37.93 4.30
123 124 1.007964 CACAAATGGCGTGCGGAAA 60.008 52.632 0.00 0.00 0.00 3.13
126 127 1.270041 ACAAATGGCGTGCGGAAAAAT 60.270 42.857 0.00 0.00 0.00 1.82
128 129 1.708822 AATGGCGTGCGGAAAAATTC 58.291 45.000 0.00 0.00 0.00 2.17
129 130 0.108851 ATGGCGTGCGGAAAAATTCC 60.109 50.000 0.00 0.00 46.62 3.01
138 139 1.336877 GGAAAAATTCCGACGCAAGC 58.663 50.000 0.00 0.00 40.59 4.01
139 140 0.974836 GAAAAATTCCGACGCAAGCG 59.025 50.000 13.50 13.50 46.03 4.68
147 148 2.668550 GACGCAAGCGGGAAGGTT 60.669 61.111 19.30 0.00 44.69 3.50
148 149 2.203294 ACGCAAGCGGGAAGGTTT 60.203 55.556 19.30 0.00 44.69 3.27
149 150 1.792118 GACGCAAGCGGGAAGGTTTT 61.792 55.000 19.30 0.00 44.69 2.43
150 151 1.362355 CGCAAGCGGGAAGGTTTTT 59.638 52.632 6.55 0.00 38.72 1.94
180 181 9.642343 TTAGTCTAACATCATCACTATAGTGGT 57.358 33.333 28.33 21.61 45.65 4.16
189 190 5.854010 ATCACTATAGTGGTGACGTTGAT 57.146 39.130 28.33 11.52 44.82 2.57
190 191 5.654603 TCACTATAGTGGTGACGTTGATT 57.345 39.130 28.33 0.00 45.65 2.57
191 192 5.407502 TCACTATAGTGGTGACGTTGATTG 58.592 41.667 28.33 2.42 45.65 2.67
195 196 2.925724 AGTGGTGACGTTGATTGGAAA 58.074 42.857 0.00 0.00 0.00 3.13
196 197 3.486383 AGTGGTGACGTTGATTGGAAAT 58.514 40.909 0.00 0.00 0.00 2.17
200 201 1.198867 TGACGTTGATTGGAAATGGCG 59.801 47.619 0.00 0.00 0.00 5.69
202 203 1.133363 CGTTGATTGGAAATGGCGCG 61.133 55.000 0.00 0.00 0.00 6.86
204 205 2.278792 GATTGGAAATGGCGCGCC 60.279 61.111 42.35 42.35 0.00 6.53
216 217 1.583709 GCGCGCCATCAACTAAAGC 60.584 57.895 23.24 0.00 0.00 3.51
218 219 1.062525 GCGCCATCAACTAAAGCCG 59.937 57.895 0.00 0.00 0.00 5.52
219 220 1.644786 GCGCCATCAACTAAAGCCGT 61.645 55.000 0.00 0.00 0.00 5.68
220 221 0.096976 CGCCATCAACTAAAGCCGTG 59.903 55.000 0.00 0.00 0.00 4.94
222 223 0.451783 CCATCAACTAAAGCCGTGCC 59.548 55.000 0.00 0.00 0.00 5.01
223 224 1.453155 CATCAACTAAAGCCGTGCCT 58.547 50.000 0.00 0.00 0.00 4.75
224 225 2.627945 CATCAACTAAAGCCGTGCCTA 58.372 47.619 0.00 0.00 0.00 3.93
225 226 2.380084 TCAACTAAAGCCGTGCCTAG 57.620 50.000 0.00 0.00 0.00 3.02
228 229 1.220749 CTAAAGCCGTGCCTAGCCA 59.779 57.895 0.00 0.00 0.00 4.75
229 230 0.179045 CTAAAGCCGTGCCTAGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
230 231 0.254747 TAAAGCCGTGCCTAGCCATT 59.745 50.000 0.00 0.00 0.00 3.16
231 232 0.611896 AAAGCCGTGCCTAGCCATTT 60.612 50.000 0.00 0.00 0.00 2.32
232 233 1.032114 AAGCCGTGCCTAGCCATTTC 61.032 55.000 0.00 0.00 0.00 2.17
234 235 1.440145 GCCGTGCCTAGCCATTTCTC 61.440 60.000 0.00 0.00 0.00 2.87
235 236 0.179000 CCGTGCCTAGCCATTTCTCT 59.821 55.000 0.00 0.00 0.00 3.10
236 237 1.412710 CCGTGCCTAGCCATTTCTCTA 59.587 52.381 0.00 0.00 0.00 2.43
237 238 2.474816 CGTGCCTAGCCATTTCTCTAC 58.525 52.381 0.00 0.00 0.00 2.59
238 239 2.101582 CGTGCCTAGCCATTTCTCTACT 59.898 50.000 0.00 0.00 0.00 2.57
239 240 3.318275 CGTGCCTAGCCATTTCTCTACTA 59.682 47.826 0.00 0.00 0.00 1.82
240 241 4.557695 CGTGCCTAGCCATTTCTCTACTAG 60.558 50.000 0.00 0.00 0.00 2.57
241 242 4.342665 GTGCCTAGCCATTTCTCTACTAGT 59.657 45.833 0.00 0.00 30.56 2.57
243 244 4.342665 GCCTAGCCATTTCTCTACTAGTGT 59.657 45.833 5.39 0.00 30.56 3.55
245 246 5.361285 CCTAGCCATTTCTCTACTAGTGTGT 59.639 44.000 5.39 0.00 30.56 3.72
246 247 6.546403 CCTAGCCATTTCTCTACTAGTGTGTA 59.454 42.308 5.39 0.00 30.56 2.90
247 248 6.458232 AGCCATTTCTCTACTAGTGTGTAG 57.542 41.667 5.39 0.00 40.75 2.74
248 249 5.044558 GCCATTTCTCTACTAGTGTGTAGC 58.955 45.833 5.39 0.00 39.61 3.58
249 250 5.593010 CCATTTCTCTACTAGTGTGTAGCC 58.407 45.833 5.39 0.00 39.61 3.93
250 251 5.127194 CCATTTCTCTACTAGTGTGTAGCCA 59.873 44.000 5.39 0.00 39.61 4.75
251 252 6.351033 CCATTTCTCTACTAGTGTGTAGCCAA 60.351 42.308 5.39 0.00 39.61 4.52
252 253 6.852420 TTTCTCTACTAGTGTGTAGCCAAT 57.148 37.500 5.39 0.00 39.61 3.16
253 254 7.949690 TTTCTCTACTAGTGTGTAGCCAATA 57.050 36.000 5.39 0.00 39.61 1.90
254 255 6.939132 TCTCTACTAGTGTGTAGCCAATAC 57.061 41.667 5.39 0.00 39.61 1.89
255 256 6.420638 TCTCTACTAGTGTGTAGCCAATACA 58.579 40.000 5.39 0.00 42.21 2.29
267 268 7.987750 TGTAGCCAATACACACAGATAAAAA 57.012 32.000 0.00 0.00 39.52 1.94
289 290 8.751302 AAAAACAGACTAATTTCGTGTTTGTT 57.249 26.923 0.00 0.00 39.75 2.83
290 291 8.751302 AAAACAGACTAATTTCGTGTTTGTTT 57.249 26.923 7.76 7.76 44.84 2.83
291 292 7.734538 AACAGACTAATTTCGTGTTTGTTTG 57.265 32.000 0.00 0.00 36.19 2.93
292 293 5.741982 ACAGACTAATTTCGTGTTTGTTTGC 59.258 36.000 0.00 0.00 0.00 3.68
293 294 4.967575 AGACTAATTTCGTGTTTGTTTGCG 59.032 37.500 0.00 0.00 0.00 4.85
294 295 4.664188 ACTAATTTCGTGTTTGTTTGCGT 58.336 34.783 0.00 0.00 0.00 5.24
296 297 2.613730 TTTCGTGTTTGTTTGCGTCA 57.386 40.000 0.00 0.00 0.00 4.35
297 298 2.613730 TTCGTGTTTGTTTGCGTCAA 57.386 40.000 0.00 0.00 0.00 3.18
298 299 1.884756 TCGTGTTTGTTTGCGTCAAC 58.115 45.000 0.00 0.00 0.00 3.18
299 300 0.559342 CGTGTTTGTTTGCGTCAACG 59.441 50.000 0.00 0.00 43.27 4.10
312 313 4.557942 CAACGCATTGGAGTTGGC 57.442 55.556 3.80 0.00 46.87 4.52
313 314 1.080569 CAACGCATTGGAGTTGGCC 60.081 57.895 0.00 0.00 46.87 5.36
314 315 1.228552 AACGCATTGGAGTTGGCCT 60.229 52.632 3.32 0.00 35.61 5.19
315 316 0.827507 AACGCATTGGAGTTGGCCTT 60.828 50.000 3.32 0.00 35.61 4.35
316 317 0.037590 ACGCATTGGAGTTGGCCTTA 59.962 50.000 3.32 0.00 0.00 2.69
318 319 1.544724 GCATTGGAGTTGGCCTTACA 58.455 50.000 3.32 0.00 0.00 2.41
319 320 2.102578 GCATTGGAGTTGGCCTTACAT 58.897 47.619 3.32 0.00 0.00 2.29
320 321 3.287222 GCATTGGAGTTGGCCTTACATA 58.713 45.455 3.32 0.00 0.00 2.29
321 322 3.891366 GCATTGGAGTTGGCCTTACATAT 59.109 43.478 3.32 0.00 0.00 1.78
322 323 4.342092 GCATTGGAGTTGGCCTTACATATT 59.658 41.667 3.32 0.00 0.00 1.28
323 324 5.737063 GCATTGGAGTTGGCCTTACATATTG 60.737 44.000 3.32 0.00 0.00 1.90
324 325 4.584638 TGGAGTTGGCCTTACATATTGT 57.415 40.909 3.32 0.00 0.00 2.71
325 326 4.929479 TGGAGTTGGCCTTACATATTGTT 58.071 39.130 3.32 0.00 0.00 2.83
326 327 6.068461 TGGAGTTGGCCTTACATATTGTTA 57.932 37.500 3.32 0.00 0.00 2.41
327 328 5.883673 TGGAGTTGGCCTTACATATTGTTAC 59.116 40.000 3.32 0.00 0.00 2.50
328 329 5.298527 GGAGTTGGCCTTACATATTGTTACC 59.701 44.000 3.32 0.00 0.00 2.85
330 331 5.650703 AGTTGGCCTTACATATTGTTACCAC 59.349 40.000 3.32 0.00 0.00 4.16
331 332 5.180810 TGGCCTTACATATTGTTACCACA 57.819 39.130 3.32 0.00 0.00 4.17
332 333 5.761205 TGGCCTTACATATTGTTACCACAT 58.239 37.500 3.32 0.00 31.06 3.21
333 334 5.592282 TGGCCTTACATATTGTTACCACATG 59.408 40.000 3.32 0.00 31.06 3.21
407 408 7.848223 TGTAGAATTTACATGTGATCCACTG 57.152 36.000 9.11 0.00 35.11 3.66
408 409 6.823182 TGTAGAATTTACATGTGATCCACTGG 59.177 38.462 9.11 0.00 35.11 4.00
436 437 9.976255 CACTAAATTCATTGCCACAAAATATTG 57.024 29.630 0.00 0.00 42.46 1.90
564 3549 6.530181 GGTTTTTCCAAATAAATAGCCGTGAG 59.470 38.462 0.00 0.00 35.97 3.51
566 3551 6.677781 TTTCCAAATAAATAGCCGTGAGAG 57.322 37.500 0.00 0.00 0.00 3.20
643 3629 1.320344 ACTCAGCGGAATAGCCACGA 61.320 55.000 0.00 0.00 38.01 4.35
671 3664 4.736896 AGTTTCTCCCGCCGCGAC 62.737 66.667 15.93 2.84 0.00 5.19
909 4064 2.825836 CTGCCGCCCAAGGTCATC 60.826 66.667 0.00 0.00 0.00 2.92
980 4669 1.282930 GCCGTCGACAAGGAGAACAC 61.283 60.000 17.16 0.00 0.00 3.32
1046 4785 2.687935 TGCTGTTGTTTCTTGGAGTTCC 59.312 45.455 0.00 0.00 0.00 3.62
1160 4928 5.044846 AGGAACAGGTATGGTCTTATTGCTT 60.045 40.000 0.00 0.00 43.18 3.91
1180 4956 1.135315 CTCGCGATTTGTTGGCCAG 59.865 57.895 10.36 0.00 0.00 4.85
1244 5082 0.926293 TCTTGGGGTTGGGGATGATC 59.074 55.000 0.00 0.00 0.00 2.92
1265 5499 8.155821 TGATCTAGTAGTAGAAACGGAATCAG 57.844 38.462 11.31 0.00 38.82 2.90
1307 5541 5.335661 GGACAGTTTCACGATTAGGCATTTT 60.336 40.000 0.00 0.00 0.00 1.82
1472 7303 3.010027 TGCAAGTGAAAGATGTGGGGATA 59.990 43.478 0.00 0.00 0.00 2.59
1482 7316 3.139025 AGATGTGGGGATAATGTCTTGGG 59.861 47.826 0.00 0.00 0.00 4.12
1513 7352 6.465948 TGCTGTCATATTTTGGCAAGAAATT 58.534 32.000 0.00 0.00 40.05 1.82
1579 7446 6.424207 CGTTATAGGGGAAGTTAAGCTGAATC 59.576 42.308 0.00 0.00 0.00 2.52
1637 7579 2.632512 GGATCCTTTTGCCTTTGGTCAA 59.367 45.455 3.84 0.00 0.00 3.18
1762 8287 6.205784 TCTTGTTATTTCTTTCACCTTTGCG 58.794 36.000 0.00 0.00 0.00 4.85
1794 8325 6.630444 ATGTGTGATCTTGATGCTAATTCC 57.370 37.500 0.00 0.00 0.00 3.01
1832 8369 5.794894 ACTATCACAAGTAAAGACTGTGGG 58.205 41.667 1.93 0.00 36.33 4.61
1863 8400 2.430694 ACCCAAGCAGGACAAACTTTTC 59.569 45.455 0.00 0.00 41.22 2.29
1866 8403 3.381272 CCAAGCAGGACAAACTTTTCTCA 59.619 43.478 0.00 0.00 41.22 3.27
2174 9771 7.340232 GCATATATGAGGAATCTTGGGCAAATA 59.660 37.037 17.10 0.00 0.00 1.40
2247 9845 5.106634 TGCCATTGTATTTTGAAGCAAATGC 60.107 36.000 0.00 0.00 42.49 3.56
2314 10586 3.118482 AGGTCATGTCCTGATTACTGCAG 60.118 47.826 13.48 13.48 35.97 4.41
2382 10658 6.351711 TGTAAACAGATGCTGCTATCAGAAT 58.648 36.000 0.00 0.00 41.34 2.40
2446 10731 7.495279 GCATAATTCCTGTAAATCATTTGCCAA 59.505 33.333 0.00 0.00 0.00 4.52
2504 10791 1.886542 AGAGGTTTCGCCATTTGGTTC 59.113 47.619 0.00 0.00 40.61 3.62
2614 10901 7.173562 ACGTTTTGTGGTCTTGCTATACATTAA 59.826 33.333 0.00 0.00 0.00 1.40
2675 10968 7.118496 ACTGGTTGTTTGTTAATTCCATTCA 57.882 32.000 0.00 0.00 0.00 2.57
2796 11092 9.965824 GTTTTCTTCATTTCCTGTCAAATAGAA 57.034 29.630 0.00 0.00 0.00 2.10
2824 11120 6.013554 TGTAGAAAAGGAAGGGGAATATGG 57.986 41.667 0.00 0.00 0.00 2.74
2856 11152 0.535102 AAGCACCAGGTTTGTCTCCG 60.535 55.000 0.00 0.00 29.59 4.63
3185 12182 5.053811 ACATGGAAACCCGAAAATTTGAAC 58.946 37.500 0.00 0.00 0.00 3.18
3247 12249 8.863049 GTTTCCATGTTTAACTCAGCATAATTG 58.137 33.333 0.00 0.00 0.00 2.32
3975 13085 8.426489 GGTTATTATTGTATAGTCACCTCACCA 58.574 37.037 0.00 0.00 0.00 4.17
3980 13090 5.854010 TGTATAGTCACCTCACCATTCTC 57.146 43.478 0.00 0.00 0.00 2.87
3981 13091 4.338400 TGTATAGTCACCTCACCATTCTCG 59.662 45.833 0.00 0.00 0.00 4.04
3982 13092 1.633774 AGTCACCTCACCATTCTCGT 58.366 50.000 0.00 0.00 0.00 4.18
3983 13093 1.971357 AGTCACCTCACCATTCTCGTT 59.029 47.619 0.00 0.00 0.00 3.85
3984 13094 2.028930 AGTCACCTCACCATTCTCGTTC 60.029 50.000 0.00 0.00 0.00 3.95
3985 13095 2.028930 GTCACCTCACCATTCTCGTTCT 60.029 50.000 0.00 0.00 0.00 3.01
4033 13160 0.612744 ACTGAAGCTTCTCAGGGAGC 59.387 55.000 26.09 0.00 46.02 4.70
4063 13190 5.500234 AGCTGTGTTCCTTTATATCTTGCA 58.500 37.500 0.00 0.00 0.00 4.08
4191 13336 6.697395 TGAGAACGTAATGAAATGGAAGAGA 58.303 36.000 0.00 0.00 0.00 3.10
4249 13394 6.928492 GGTTTTCTGCAATTCCATCAAAGTAA 59.072 34.615 0.00 0.00 0.00 2.24
4320 13465 3.121445 GTCGCCGTAAAGAGAAACTTCTG 59.879 47.826 0.00 0.00 37.73 3.02
4343 13488 6.573434 TGAAGTTCTTCAGCACGTATGATAT 58.427 36.000 10.67 0.00 0.00 1.63
4591 13789 3.328505 GTGCTGAATTTCCATTGTTGGG 58.671 45.455 0.00 0.00 43.81 4.12
4608 13806 3.034721 TGGGTACACGACACTCATTTC 57.965 47.619 0.00 0.00 30.09 2.17
4798 14009 4.477975 CGTCCGAGCGTGACCCTC 62.478 72.222 0.00 0.00 0.00 4.30
4807 14018 1.812686 GCGTGACCCTCCTGTACACA 61.813 60.000 0.00 0.00 0.00 3.72
4853 14064 2.511145 GCGCTCCTTCTGCTGAGG 60.511 66.667 0.00 0.00 0.00 3.86
4854 14065 2.977178 CGCTCCTTCTGCTGAGGT 59.023 61.111 2.12 0.00 0.00 3.85
4893 14104 1.209019 CCAGAGAGAACATCCTGGTGG 59.791 57.143 0.00 0.00 39.60 4.61
4894 14105 1.905215 CAGAGAGAACATCCTGGTGGT 59.095 52.381 0.00 0.00 34.23 4.16
4895 14106 2.093764 CAGAGAGAACATCCTGGTGGTC 60.094 54.545 6.30 6.30 36.04 4.02
4896 14107 1.902508 GAGAGAACATCCTGGTGGTCA 59.097 52.381 14.06 0.00 38.29 4.02
4897 14108 1.905215 AGAGAACATCCTGGTGGTCAG 59.095 52.381 14.06 0.00 38.29 3.51
4898 14109 1.902508 GAGAACATCCTGGTGGTCAGA 59.097 52.381 14.06 0.00 46.18 3.27
4899 14110 2.303022 GAGAACATCCTGGTGGTCAGAA 59.697 50.000 14.06 0.00 46.18 3.02
4900 14111 2.915604 AGAACATCCTGGTGGTCAGAAT 59.084 45.455 14.06 0.00 46.18 2.40
4901 14112 3.331889 AGAACATCCTGGTGGTCAGAATT 59.668 43.478 14.06 0.00 46.18 2.17
4902 14113 3.356529 ACATCCTGGTGGTCAGAATTC 57.643 47.619 0.00 0.00 46.18 2.17
4903 14114 2.644299 ACATCCTGGTGGTCAGAATTCA 59.356 45.455 8.44 0.00 46.18 2.57
4904 14115 3.074390 ACATCCTGGTGGTCAGAATTCAA 59.926 43.478 8.44 0.00 46.18 2.69
4905 14116 3.423539 TCCTGGTGGTCAGAATTCAAG 57.576 47.619 8.44 0.00 46.18 3.02
4906 14117 2.711009 TCCTGGTGGTCAGAATTCAAGT 59.289 45.455 8.44 0.00 46.18 3.16
4907 14118 3.077359 CCTGGTGGTCAGAATTCAAGTC 58.923 50.000 8.44 0.00 46.18 3.01
4908 14119 3.496692 CCTGGTGGTCAGAATTCAAGTCA 60.497 47.826 8.44 0.00 46.18 3.41
4909 14120 4.330250 CTGGTGGTCAGAATTCAAGTCAT 58.670 43.478 8.44 0.00 46.18 3.06
4910 14121 5.491070 CTGGTGGTCAGAATTCAAGTCATA 58.509 41.667 8.44 0.00 46.18 2.15
4911 14122 5.875224 TGGTGGTCAGAATTCAAGTCATAA 58.125 37.500 8.44 0.00 0.00 1.90
4912 14123 5.939883 TGGTGGTCAGAATTCAAGTCATAAG 59.060 40.000 8.44 0.00 0.00 1.73
4913 14124 5.355350 GGTGGTCAGAATTCAAGTCATAAGG 59.645 44.000 8.44 0.00 0.00 2.69
4914 14125 4.943705 TGGTCAGAATTCAAGTCATAAGGC 59.056 41.667 8.44 0.00 0.00 4.35
4915 14126 5.189180 GGTCAGAATTCAAGTCATAAGGCT 58.811 41.667 8.44 0.00 0.00 4.58
4916 14127 5.649831 GGTCAGAATTCAAGTCATAAGGCTT 59.350 40.000 8.44 4.58 0.00 4.35
4917 14128 6.183360 GGTCAGAATTCAAGTCATAAGGCTTC 60.183 42.308 1.30 0.00 0.00 3.86
4918 14129 5.882557 TCAGAATTCAAGTCATAAGGCTTCC 59.117 40.000 1.30 0.00 0.00 3.46
4919 14130 5.067023 CAGAATTCAAGTCATAAGGCTTCCC 59.933 44.000 1.30 0.00 0.00 3.97
4920 14131 4.591321 ATTCAAGTCATAAGGCTTCCCA 57.409 40.909 1.30 0.00 0.00 4.37
4921 14132 3.634397 TCAAGTCATAAGGCTTCCCAG 57.366 47.619 1.30 0.00 0.00 4.45
4922 14133 3.181329 TCAAGTCATAAGGCTTCCCAGA 58.819 45.455 1.30 0.00 0.00 3.86
4923 14134 3.198635 TCAAGTCATAAGGCTTCCCAGAG 59.801 47.826 1.30 0.00 0.00 3.35
4924 14135 3.121929 AGTCATAAGGCTTCCCAGAGA 57.878 47.619 1.30 0.00 0.00 3.10
4925 14136 3.454858 AGTCATAAGGCTTCCCAGAGAA 58.545 45.455 1.30 0.00 0.00 2.87
4926 14137 3.846588 AGTCATAAGGCTTCCCAGAGAAA 59.153 43.478 1.30 0.00 32.88 2.52
4927 14138 4.289672 AGTCATAAGGCTTCCCAGAGAAAA 59.710 41.667 1.30 0.00 32.88 2.29
4928 14139 4.396478 GTCATAAGGCTTCCCAGAGAAAAC 59.604 45.833 1.30 0.00 32.88 2.43
4929 14140 4.042809 TCATAAGGCTTCCCAGAGAAAACA 59.957 41.667 1.30 0.00 32.88 2.83
4930 14141 3.532641 AAGGCTTCCCAGAGAAAACAT 57.467 42.857 0.00 0.00 32.88 2.71
4931 14142 3.078891 AGGCTTCCCAGAGAAAACATC 57.921 47.619 0.00 0.00 32.88 3.06
4932 14143 2.095461 GGCTTCCCAGAGAAAACATCC 58.905 52.381 0.00 0.00 32.88 3.51
4933 14144 2.291217 GGCTTCCCAGAGAAAACATCCT 60.291 50.000 0.00 0.00 32.88 3.24
4934 14145 2.751806 GCTTCCCAGAGAAAACATCCTG 59.248 50.000 0.00 0.00 32.88 3.86
4935 14146 3.350833 CTTCCCAGAGAAAACATCCTGG 58.649 50.000 0.00 0.00 42.03 4.45
4936 14147 2.348472 TCCCAGAGAAAACATCCTGGT 58.652 47.619 0.00 0.00 41.38 4.00
4937 14148 2.040278 TCCCAGAGAAAACATCCTGGTG 59.960 50.000 0.00 0.00 41.38 4.17
4938 14149 2.040278 CCCAGAGAAAACATCCTGGTGA 59.960 50.000 0.00 0.00 41.38 4.02
4939 14150 3.308688 CCCAGAGAAAACATCCTGGTGAT 60.309 47.826 0.00 0.00 41.38 3.06
4940 14151 3.944015 CCAGAGAAAACATCCTGGTGATC 59.056 47.826 0.00 0.00 39.64 2.92
4941 14152 4.566278 CCAGAGAAAACATCCTGGTGATCA 60.566 45.833 0.00 0.00 39.64 2.92
4942 14153 4.634883 CAGAGAAAACATCCTGGTGATCAG 59.365 45.833 0.00 0.00 43.00 2.90
4943 14154 4.533707 AGAGAAAACATCCTGGTGATCAGA 59.466 41.667 0.00 0.00 46.18 3.27
4944 14155 4.841422 AGAAAACATCCTGGTGATCAGAG 58.159 43.478 0.00 0.00 46.18 3.35
4945 14156 4.288105 AGAAAACATCCTGGTGATCAGAGT 59.712 41.667 0.00 0.00 46.18 3.24
4946 14157 4.647564 AAACATCCTGGTGATCAGAGTT 57.352 40.909 0.00 0.00 46.18 3.01
4947 14158 3.902881 ACATCCTGGTGATCAGAGTTC 57.097 47.619 0.00 0.00 46.18 3.01
4948 14159 3.176411 ACATCCTGGTGATCAGAGTTCA 58.824 45.455 0.00 0.00 46.18 3.18
4949 14160 3.584406 ACATCCTGGTGATCAGAGTTCAA 59.416 43.478 0.00 0.00 46.18 2.69
4950 14161 3.969287 TCCTGGTGATCAGAGTTCAAG 57.031 47.619 0.00 0.00 46.18 3.02
4951 14162 3.242867 TCCTGGTGATCAGAGTTCAAGT 58.757 45.455 0.00 0.00 46.18 3.16
4952 14163 3.259374 TCCTGGTGATCAGAGTTCAAGTC 59.741 47.826 0.00 0.00 46.18 3.01
4953 14164 3.007290 CCTGGTGATCAGAGTTCAAGTCA 59.993 47.826 0.00 0.00 46.18 3.41
4954 14165 4.503817 CCTGGTGATCAGAGTTCAAGTCAA 60.504 45.833 0.00 0.00 46.18 3.18
4955 14166 4.380531 TGGTGATCAGAGTTCAAGTCAAC 58.619 43.478 0.00 0.00 0.00 3.18
4956 14167 4.141733 TGGTGATCAGAGTTCAAGTCAACA 60.142 41.667 0.00 0.00 31.49 3.33
4957 14168 4.450419 GGTGATCAGAGTTCAAGTCAACAG 59.550 45.833 0.00 0.00 0.00 3.16
4958 14169 5.292765 GTGATCAGAGTTCAAGTCAACAGA 58.707 41.667 0.00 0.00 0.00 3.41
4959 14170 5.176590 GTGATCAGAGTTCAAGTCAACAGAC 59.823 44.000 0.00 0.00 0.00 3.51
4960 14171 5.069648 TGATCAGAGTTCAAGTCAACAGACT 59.930 40.000 0.00 0.00 44.25 3.24
4972 14183 6.325919 AGTCAACAGACTTTCTAGAGAGTG 57.674 41.667 19.92 9.56 39.54 3.51
4973 14184 5.242838 AGTCAACAGACTTTCTAGAGAGTGG 59.757 44.000 19.92 13.71 39.54 4.00
5113 14460 3.826729 GGATTAAAGTTGAGTTGGGCTGT 59.173 43.478 0.00 0.00 0.00 4.40
5117 14464 0.395586 AGTTGAGTTGGGCTGTTGCA 60.396 50.000 0.00 0.00 41.91 4.08
5180 14575 0.909623 CCGATGAAGTTGGGGTAGGT 59.090 55.000 0.00 0.00 0.00 3.08
5184 14579 4.262335 CCGATGAAGTTGGGGTAGGTATAC 60.262 50.000 0.00 0.00 0.00 1.47
5219 14737 2.294233 GTGCATTCTTCTTCTGTTGGCA 59.706 45.455 0.00 0.00 0.00 4.92
5239 14775 4.036027 GGCATTCTGTGATCACATTCGAAT 59.964 41.667 28.00 26.23 41.01 3.34
5356 14899 0.823356 GTCTCTTTGGTGGCTTGCCA 60.823 55.000 10.65 10.65 0.00 4.92
5383 14926 4.107622 GTTTACAGCAATGTGGATGATGC 58.892 43.478 0.00 0.00 37.70 3.91
5622 15188 2.408271 TGCCACTGGATTGATCAGTC 57.592 50.000 9.63 9.63 42.87 3.51
5733 15312 4.331168 GCTTGTGTCTGAACCTGTATGATC 59.669 45.833 0.00 0.00 0.00 2.92
5780 15360 1.334869 GAGTCACAACCTGGTGCTTTG 59.665 52.381 0.00 0.00 38.66 2.77
5784 15364 1.476085 CACAACCTGGTGCTTTGTTCA 59.524 47.619 0.00 0.00 30.98 3.18
5785 15365 2.101249 CACAACCTGGTGCTTTGTTCAT 59.899 45.455 0.00 0.00 30.98 2.57
5786 15366 2.362077 ACAACCTGGTGCTTTGTTCATC 59.638 45.455 0.00 0.00 28.92 2.92
5807 15387 9.507329 TTCATCTTATCTTTTGCAGTACTTTCT 57.493 29.630 0.00 0.00 0.00 2.52
5833 15413 6.897259 TGGCTTGTAATAACTCGTATGTTC 57.103 37.500 0.00 0.00 0.00 3.18
5932 15512 8.581253 TTTTTGAGGAGGCCAAAATTTTTAAA 57.419 26.923 5.01 0.00 41.39 1.52
5933 15513 7.800155 TTTGAGGAGGCCAAAATTTTTAAAG 57.200 32.000 5.01 0.00 31.36 1.85
5934 15514 6.739331 TGAGGAGGCCAAAATTTTTAAAGA 57.261 33.333 5.01 0.00 0.00 2.52
5935 15515 7.315066 TGAGGAGGCCAAAATTTTTAAAGAT 57.685 32.000 5.01 0.00 0.00 2.40
5936 15516 7.744733 TGAGGAGGCCAAAATTTTTAAAGATT 58.255 30.769 5.01 0.00 0.00 2.40
5937 15517 7.877612 TGAGGAGGCCAAAATTTTTAAAGATTC 59.122 33.333 5.01 0.00 0.00 2.52
5938 15518 7.744733 AGGAGGCCAAAATTTTTAAAGATTCA 58.255 30.769 5.01 0.00 0.00 2.57
5939 15519 8.217111 AGGAGGCCAAAATTTTTAAAGATTCAA 58.783 29.630 5.01 0.00 0.00 2.69
5940 15520 8.845227 GGAGGCCAAAATTTTTAAAGATTCAAA 58.155 29.630 5.01 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.757227 CCATCTTCTATCACTACTCCTTTTTAG 57.243 37.037 0.00 0.00 0.00 1.85
8 9 8.261522 GTCCATCTTCTATCACTACTCCTTTTT 58.738 37.037 0.00 0.00 0.00 1.94
10 11 6.325286 GGTCCATCTTCTATCACTACTCCTTT 59.675 42.308 0.00 0.00 0.00 3.11
15 16 5.772004 ACTGGTCCATCTTCTATCACTACT 58.228 41.667 0.00 0.00 0.00 2.57
16 17 6.773685 AGTACTGGTCCATCTTCTATCACTAC 59.226 42.308 0.00 0.00 0.00 2.73
18 19 5.596361 CAGTACTGGTCCATCTTCTATCACT 59.404 44.000 15.49 0.00 0.00 3.41
19 20 5.221342 CCAGTACTGGTCCATCTTCTATCAC 60.221 48.000 30.57 0.00 45.53 3.06
20 21 4.895889 CCAGTACTGGTCCATCTTCTATCA 59.104 45.833 30.57 0.00 45.53 2.15
21 22 5.461032 CCAGTACTGGTCCATCTTCTATC 57.539 47.826 30.57 0.00 45.53 2.08
50 51 7.285401 ACTTTTATTATGACATGGCCTGTTAGG 59.715 37.037 3.32 0.00 38.54 2.69
51 52 8.225603 ACTTTTATTATGACATGGCCTGTTAG 57.774 34.615 3.32 0.00 38.54 2.34
53 54 8.588290 TTACTTTTATTATGACATGGCCTGTT 57.412 30.769 3.32 0.00 38.54 3.16
54 55 8.588290 TTTACTTTTATTATGACATGGCCTGT 57.412 30.769 3.32 5.85 42.15 4.00
55 56 7.649306 GCTTTACTTTTATTATGACATGGCCTG 59.351 37.037 3.32 2.01 0.00 4.85
56 57 7.201911 GGCTTTACTTTTATTATGACATGGCCT 60.202 37.037 3.32 0.00 0.00 5.19
57 58 6.923508 GGCTTTACTTTTATTATGACATGGCC 59.076 38.462 0.00 0.00 0.00 5.36
58 59 6.923508 GGGCTTTACTTTTATTATGACATGGC 59.076 38.462 0.00 0.00 0.00 4.40
60 61 8.006298 TGGGGCTTTACTTTTATTATGACATG 57.994 34.615 0.00 0.00 0.00 3.21
61 62 8.602472 TTGGGGCTTTACTTTTATTATGACAT 57.398 30.769 0.00 0.00 0.00 3.06
62 63 8.423906 TTTGGGGCTTTACTTTTATTATGACA 57.576 30.769 0.00 0.00 0.00 3.58
63 64 9.366216 CTTTTGGGGCTTTACTTTTATTATGAC 57.634 33.333 0.00 0.00 0.00 3.06
64 65 9.315363 TCTTTTGGGGCTTTACTTTTATTATGA 57.685 29.630 0.00 0.00 0.00 2.15
68 69 9.688091 TTTTTCTTTTGGGGCTTTACTTTTATT 57.312 25.926 0.00 0.00 0.00 1.40
94 95 4.981674 CACGCCATTTGTGTTATCTGTTTT 59.018 37.500 0.00 0.00 34.84 2.43
96 97 3.611530 GCACGCCATTTGTGTTATCTGTT 60.612 43.478 0.00 0.00 39.53 3.16
97 98 2.095263 GCACGCCATTTGTGTTATCTGT 60.095 45.455 0.00 0.00 39.53 3.41
98 99 2.518949 GCACGCCATTTGTGTTATCTG 58.481 47.619 0.00 0.00 39.53 2.90
99 100 1.130373 CGCACGCCATTTGTGTTATCT 59.870 47.619 0.00 0.00 39.53 1.98
101 102 0.170116 CCGCACGCCATTTGTGTTAT 59.830 50.000 0.00 0.00 39.53 1.89
102 103 0.885150 TCCGCACGCCATTTGTGTTA 60.885 50.000 0.00 0.00 39.53 2.41
103 104 1.729470 TTCCGCACGCCATTTGTGTT 61.729 50.000 0.00 0.00 39.53 3.32
105 106 0.596083 TTTTCCGCACGCCATTTGTG 60.596 50.000 0.00 0.00 40.32 3.33
106 107 0.103208 TTTTTCCGCACGCCATTTGT 59.897 45.000 0.00 0.00 0.00 2.83
107 108 1.427435 ATTTTTCCGCACGCCATTTG 58.573 45.000 0.00 0.00 0.00 2.32
108 109 2.065512 GAATTTTTCCGCACGCCATTT 58.934 42.857 0.00 0.00 0.00 2.32
109 110 1.671556 GGAATTTTTCCGCACGCCATT 60.672 47.619 0.00 0.00 40.59 3.16
110 111 0.108851 GGAATTTTTCCGCACGCCAT 60.109 50.000 0.00 0.00 40.59 4.40
111 112 1.287503 GGAATTTTTCCGCACGCCA 59.712 52.632 0.00 0.00 40.59 5.69
112 113 4.162640 GGAATTTTTCCGCACGCC 57.837 55.556 0.00 0.00 40.59 5.68
119 120 1.336877 GCTTGCGTCGGAATTTTTCC 58.663 50.000 0.00 0.00 46.62 3.13
120 121 0.974836 CGCTTGCGTCGGAATTTTTC 59.025 50.000 6.86 0.00 0.00 2.29
121 122 3.086161 CGCTTGCGTCGGAATTTTT 57.914 47.368 6.86 0.00 0.00 1.94
122 123 4.838959 CGCTTGCGTCGGAATTTT 57.161 50.000 6.86 0.00 0.00 1.82
130 131 1.792118 AAAACCTTCCCGCTTGCGTC 61.792 55.000 13.97 0.00 0.00 5.19
131 132 1.388837 AAAAACCTTCCCGCTTGCGT 61.389 50.000 13.97 0.00 0.00 5.24
156 157 7.780271 TCACCACTATAGTGATGATGTTAGACT 59.220 37.037 30.41 0.00 43.29 3.24
157 158 7.941919 TCACCACTATAGTGATGATGTTAGAC 58.058 38.462 30.41 0.00 43.29 2.59
170 171 4.464951 TCCAATCAACGTCACCACTATAGT 59.535 41.667 0.00 0.00 0.00 2.12
171 172 5.006153 TCCAATCAACGTCACCACTATAG 57.994 43.478 0.00 0.00 0.00 1.31
173 174 3.973206 TCCAATCAACGTCACCACTAT 57.027 42.857 0.00 0.00 0.00 2.12
174 175 3.755112 TTCCAATCAACGTCACCACTA 57.245 42.857 0.00 0.00 0.00 2.74
177 178 2.556189 CCATTTCCAATCAACGTCACCA 59.444 45.455 0.00 0.00 0.00 4.17
178 179 2.671070 GCCATTTCCAATCAACGTCACC 60.671 50.000 0.00 0.00 0.00 4.02
179 180 2.595386 GCCATTTCCAATCAACGTCAC 58.405 47.619 0.00 0.00 0.00 3.67
180 181 1.198867 CGCCATTTCCAATCAACGTCA 59.801 47.619 0.00 0.00 0.00 4.35
181 182 1.895051 CGCCATTTCCAATCAACGTC 58.105 50.000 0.00 0.00 0.00 4.34
182 183 0.109319 GCGCCATTTCCAATCAACGT 60.109 50.000 0.00 0.00 0.00 3.99
184 185 1.413008 GCGCGCCATTTCCAATCAAC 61.413 55.000 23.24 0.00 0.00 3.18
185 186 1.153862 GCGCGCCATTTCCAATCAA 60.154 52.632 23.24 0.00 0.00 2.57
186 187 2.489285 GCGCGCCATTTCCAATCA 59.511 55.556 23.24 0.00 0.00 2.57
187 188 2.278792 GGCGCGCCATTTCCAATC 60.279 61.111 43.55 13.42 35.81 2.67
188 189 3.067439 TGGCGCGCCATTTCCAAT 61.067 55.556 46.88 0.00 41.89 3.16
200 201 1.062525 CGGCTTTAGTTGATGGCGC 59.937 57.895 0.00 0.00 41.11 6.53
202 203 0.179163 GCACGGCTTTAGTTGATGGC 60.179 55.000 0.00 0.00 0.00 4.40
204 205 1.453155 AGGCACGGCTTTAGTTGATG 58.547 50.000 0.00 0.00 0.00 3.07
205 206 2.906354 CTAGGCACGGCTTTAGTTGAT 58.094 47.619 0.00 0.00 0.00 2.57
206 207 1.674817 GCTAGGCACGGCTTTAGTTGA 60.675 52.381 0.00 0.00 0.00 3.18
208 209 0.392595 GGCTAGGCACGGCTTTAGTT 60.393 55.000 12.16 0.00 33.21 2.24
209 210 1.221021 GGCTAGGCACGGCTTTAGT 59.779 57.895 12.16 0.00 33.21 2.24
210 211 0.179045 ATGGCTAGGCACGGCTTTAG 60.179 55.000 22.77 0.00 33.21 1.85
211 212 0.254747 AATGGCTAGGCACGGCTTTA 59.745 50.000 22.77 0.00 33.21 1.85
212 213 0.611896 AAATGGCTAGGCACGGCTTT 60.612 50.000 22.77 14.92 33.21 3.51
216 217 0.179000 AGAGAAATGGCTAGGCACGG 59.821 55.000 22.77 0.00 0.00 4.94
218 219 3.828875 AGTAGAGAAATGGCTAGGCAC 57.171 47.619 22.77 9.29 0.00 5.01
219 220 4.342378 CACTAGTAGAGAAATGGCTAGGCA 59.658 45.833 22.54 22.54 34.94 4.75
220 221 4.342665 ACACTAGTAGAGAAATGGCTAGGC 59.657 45.833 9.85 9.85 34.94 3.93
222 223 6.458232 ACACACTAGTAGAGAAATGGCTAG 57.542 41.667 3.59 0.00 36.25 3.42
223 224 6.039493 GCTACACACTAGTAGAGAAATGGCTA 59.961 42.308 3.59 0.00 43.24 3.93
224 225 5.163499 GCTACACACTAGTAGAGAAATGGCT 60.163 44.000 3.59 0.00 43.24 4.75
225 226 5.044558 GCTACACACTAGTAGAGAAATGGC 58.955 45.833 3.59 0.00 43.24 4.40
228 229 6.852420 TTGGCTACACACTAGTAGAGAAAT 57.148 37.500 3.59 0.00 43.24 2.17
229 230 6.852420 ATTGGCTACACACTAGTAGAGAAA 57.148 37.500 3.59 0.00 43.24 2.52
230 231 6.888088 TGTATTGGCTACACACTAGTAGAGAA 59.112 38.462 3.59 0.00 43.24 2.87
231 232 6.420638 TGTATTGGCTACACACTAGTAGAGA 58.579 40.000 3.59 0.00 43.24 3.10
232 233 6.694877 TGTATTGGCTACACACTAGTAGAG 57.305 41.667 3.59 0.00 43.24 2.43
243 244 7.987750 TTTTTATCTGTGTGTATTGGCTACA 57.012 32.000 0.00 0.00 38.02 2.74
264 265 8.751302 AACAAACACGAAATTAGTCTGTTTTT 57.249 26.923 0.00 0.00 0.00 1.94
265 266 8.643752 CAAACAAACACGAAATTAGTCTGTTTT 58.356 29.630 0.00 0.00 33.47 2.43
266 267 7.201401 GCAAACAAACACGAAATTAGTCTGTTT 60.201 33.333 0.00 0.00 35.47 2.83
267 268 6.252655 GCAAACAAACACGAAATTAGTCTGTT 59.747 34.615 0.00 0.00 0.00 3.16
268 269 5.741982 GCAAACAAACACGAAATTAGTCTGT 59.258 36.000 0.00 0.00 0.00 3.41
270 271 4.967575 CGCAAACAAACACGAAATTAGTCT 59.032 37.500 0.00 0.00 0.00 3.24
271 272 4.731480 ACGCAAACAAACACGAAATTAGTC 59.269 37.500 0.00 0.00 0.00 2.59
272 273 4.664188 ACGCAAACAAACACGAAATTAGT 58.336 34.783 0.00 0.00 0.00 2.24
273 274 4.731000 TGACGCAAACAAACACGAAATTAG 59.269 37.500 0.00 0.00 0.00 1.73
274 275 4.659088 TGACGCAAACAAACACGAAATTA 58.341 34.783 0.00 0.00 0.00 1.40
275 276 3.502920 TGACGCAAACAAACACGAAATT 58.497 36.364 0.00 0.00 0.00 1.82
276 277 3.138205 TGACGCAAACAAACACGAAAT 57.862 38.095 0.00 0.00 0.00 2.17
277 278 2.613730 TGACGCAAACAAACACGAAA 57.386 40.000 0.00 0.00 0.00 3.46
278 279 2.243407 GTTGACGCAAACAAACACGAA 58.757 42.857 0.00 0.00 0.00 3.85
279 280 1.787281 CGTTGACGCAAACAAACACGA 60.787 47.619 0.00 0.00 0.00 4.35
280 281 0.559342 CGTTGACGCAAACAAACACG 59.441 50.000 2.23 0.00 0.00 4.49
292 293 0.110238 CCAACTCCAATGCGTTGACG 60.110 55.000 20.36 12.10 42.24 4.35
293 294 0.387239 GCCAACTCCAATGCGTTGAC 60.387 55.000 20.36 0.00 42.24 3.18
294 295 1.523154 GGCCAACTCCAATGCGTTGA 61.523 55.000 20.36 5.53 42.24 3.18
296 297 0.827507 AAGGCCAACTCCAATGCGTT 60.828 50.000 5.01 0.00 0.00 4.84
297 298 0.037590 TAAGGCCAACTCCAATGCGT 59.962 50.000 5.01 0.00 0.00 5.24
298 299 0.451783 GTAAGGCCAACTCCAATGCG 59.548 55.000 5.01 0.00 0.00 4.73
299 300 1.544724 TGTAAGGCCAACTCCAATGC 58.455 50.000 5.01 0.00 0.00 3.56
301 302 5.518865 ACAATATGTAAGGCCAACTCCAAT 58.481 37.500 5.01 0.00 0.00 3.16
302 303 4.929479 ACAATATGTAAGGCCAACTCCAA 58.071 39.130 5.01 0.00 0.00 3.53
303 304 4.584638 ACAATATGTAAGGCCAACTCCA 57.415 40.909 5.01 0.00 0.00 3.86
304 305 5.298527 GGTAACAATATGTAAGGCCAACTCC 59.701 44.000 5.01 0.00 0.00 3.85
384 385 6.238484 GCCAGTGGATCACATGTAAATTCTAC 60.238 42.308 15.20 1.76 36.74 2.59
385 386 5.822519 GCCAGTGGATCACATGTAAATTCTA 59.177 40.000 15.20 0.00 36.74 2.10
388 389 3.701040 GGCCAGTGGATCACATGTAAATT 59.299 43.478 15.20 0.00 36.74 1.82
407 408 2.233431 TGTGGCAATGAATTTAGTGGCC 59.767 45.455 19.02 11.50 40.00 5.36
408 409 3.591196 TGTGGCAATGAATTTAGTGGC 57.409 42.857 15.82 15.82 40.95 5.01
481 487 0.476771 ACACAGGTCCCGTGGAAAAT 59.523 50.000 10.05 0.00 38.74 1.82
513 519 3.264964 AGGGCGGTTTGGTCTATTAGAAA 59.735 43.478 0.00 0.00 0.00 2.52
564 3549 1.985895 TGGAAAAGGGGAGAAGGTCTC 59.014 52.381 0.00 0.00 42.66 3.36
566 3551 2.357257 GGATGGAAAAGGGGAGAAGGTC 60.357 54.545 0.00 0.00 0.00 3.85
598 3583 1.204312 GCGTGGAGAAGAAACGTGC 59.796 57.895 0.00 0.00 39.45 5.34
625 3611 0.596083 CTCGTGGCTATTCCGCTGAG 60.596 60.000 0.00 0.00 43.21 3.35
636 3622 4.704103 TGGAGGGCTCTCGTGGCT 62.704 66.667 7.70 0.00 40.85 4.75
643 3629 0.988063 GGAGAAACTTGGAGGGCTCT 59.012 55.000 0.00 0.00 0.00 4.09
671 3664 2.967076 CGGATGGTTCCATCGCGG 60.967 66.667 20.96 11.77 42.74 6.46
672 3665 2.967076 CCGGATGGTTCCATCGCG 60.967 66.667 20.96 22.11 42.74 5.87
750 3773 2.045045 CCATTGGAGGAGGCGCAA 60.045 61.111 10.83 0.00 0.00 4.85
909 4064 2.131067 GGAGCTCGGAGGAGAAGGG 61.131 68.421 7.83 0.00 43.27 3.95
1027 4765 3.316308 CCAGGAACTCCAAGAAACAACAG 59.684 47.826 0.00 0.00 34.60 3.16
1130 4897 4.031611 AGACCATACCTGTTCCTTCCTAC 58.968 47.826 0.00 0.00 0.00 3.18
1160 4928 2.560861 GCCAACAAATCGCGAGCA 59.439 55.556 16.66 0.00 0.00 4.26
1180 4956 3.399330 TCCACATTCCGAACAGAAAGAC 58.601 45.455 0.00 0.00 0.00 3.01
1265 5499 3.513515 TGTCCCCAACATTTGCCTAAATC 59.486 43.478 0.00 0.00 34.34 2.17
1307 5541 9.658799 CAAGAAGAACTGAGTAATAATCAGGAA 57.341 33.333 19.87 0.00 46.89 3.36
1389 7176 2.040278 TCAATTAGCACAAGCCTGGACT 59.960 45.455 0.00 0.00 43.56 3.85
1472 7303 1.145738 AGCAACCACTCCCAAGACATT 59.854 47.619 0.00 0.00 0.00 2.71
1482 7316 4.737054 CCAAAATATGACAGCAACCACTC 58.263 43.478 0.00 0.00 0.00 3.51
1513 7352 6.873076 GGAAACTGATACATTTTGGCATCAAA 59.127 34.615 0.00 0.00 40.71 2.69
1579 7446 5.642063 TCAAGTTAAGTAATCCCGAGCAAAG 59.358 40.000 0.00 0.00 0.00 2.77
1746 8271 3.304391 CGGATTCGCAAAGGTGAAAGAAA 60.304 43.478 0.00 0.00 45.80 2.52
1762 8287 5.801350 TCAAGATCACACATTTCGGATTC 57.199 39.130 0.00 0.00 0.00 2.52
1794 8325 3.614616 GTGATAGTTTCTCCTGCTCAACG 59.385 47.826 0.00 0.00 0.00 4.10
1832 8369 1.528129 CTGCTTGGGTCTCACCTTTC 58.472 55.000 0.00 0.00 38.64 2.62
2054 9574 6.516718 TGAACAAACAGAAACCAAGAAAACA 58.483 32.000 0.00 0.00 0.00 2.83
2174 9771 0.250295 ACGTGTGTACTGCTGCCAAT 60.250 50.000 0.00 0.00 0.00 3.16
2247 9845 5.180117 CAGACAACAGTTCCAACAAGATAGG 59.820 44.000 0.00 0.00 0.00 2.57
2314 10586 5.705905 ACTTCAGGCTCTGTTACCAAAATAC 59.294 40.000 2.68 0.00 32.61 1.89
2401 10683 4.212143 TGCTCAGTTATGCAGTCTTGAT 57.788 40.909 0.00 0.00 34.84 2.57
2446 10731 3.016031 TGCTCACCGATTTTGCATGTAT 58.984 40.909 0.00 0.00 0.00 2.29
2504 10791 2.879103 ACCAGTTCCAGGTACCAATG 57.121 50.000 15.94 4.23 37.67 2.82
2551 10838 8.992073 AGCTTCTTTATTTTTGGCAACTATTTG 58.008 29.630 0.00 0.00 35.62 2.32
2626 10913 4.820894 TTTTCCTTTTCCCGGTCAAAAA 57.179 36.364 0.00 3.64 0.00 1.94
2796 11092 7.872061 ATTCCCCTTCCTTTTCTACAAAAAT 57.128 32.000 0.00 0.00 30.90 1.82
2824 11120 1.210155 GTGCTTCACATGTTCCGGC 59.790 57.895 0.00 0.00 34.08 6.13
2856 11152 3.911868 TGTGCATGACATTAGGCAAAAC 58.088 40.909 0.00 0.00 39.24 2.43
3307 12309 4.434520 GCCTCGTCAGAAGTAAGCTTATT 58.565 43.478 9.88 1.92 34.61 1.40
3476 12485 4.854399 TCCTGTTGTACATTCGCAAAAAG 58.146 39.130 0.00 0.00 0.00 2.27
3975 13085 9.069082 ACTATAGCATAGTAACAGAACGAGAAT 57.931 33.333 0.00 0.00 0.00 2.40
4033 13160 8.200792 AGATATAAAGGAACACAGCTAAGACAG 58.799 37.037 0.00 0.00 0.00 3.51
4191 13336 3.418684 AACCTGCTAGTTGATTCCGTT 57.581 42.857 0.00 0.00 0.00 4.44
4249 13394 2.061509 TGGCATGCATTCAGCTACAT 57.938 45.000 21.36 0.00 45.94 2.29
4320 13465 6.697455 TCATATCATACGTGCTGAAGAACTTC 59.303 38.462 0.00 7.51 39.91 3.01
4343 13488 2.595124 TTTCTCACTGTCTTGCGTCA 57.405 45.000 0.00 0.00 0.00 4.35
4591 13789 3.428870 CAGGTGAAATGAGTGTCGTGTAC 59.571 47.826 0.00 0.00 0.00 2.90
4608 13806 2.193306 GTGCAACAACAAGTCAGGTG 57.807 50.000 0.00 0.00 36.32 4.00
4807 14018 4.211125 AGATGATGTCGTAGTGATCACCT 58.789 43.478 22.21 11.95 31.39 4.00
4853 14064 0.591659 GAAGCCCGGTGACTTGAAAC 59.408 55.000 0.00 0.00 0.00 2.78
4854 14065 0.536460 GGAAGCCCGGTGACTTGAAA 60.536 55.000 0.00 0.00 0.00 2.69
4893 14104 6.183360 GGAAGCCTTATGACTTGAATTCTGAC 60.183 42.308 7.05 1.38 0.00 3.51
4894 14105 5.882557 GGAAGCCTTATGACTTGAATTCTGA 59.117 40.000 7.05 0.00 0.00 3.27
4895 14106 5.067023 GGGAAGCCTTATGACTTGAATTCTG 59.933 44.000 7.05 2.42 0.00 3.02
4896 14107 5.196695 GGGAAGCCTTATGACTTGAATTCT 58.803 41.667 7.05 0.00 0.00 2.40
4897 14108 4.949856 TGGGAAGCCTTATGACTTGAATTC 59.050 41.667 0.00 0.00 0.00 2.17
4898 14109 4.934356 TGGGAAGCCTTATGACTTGAATT 58.066 39.130 0.00 0.00 0.00 2.17
4899 14110 4.228210 TCTGGGAAGCCTTATGACTTGAAT 59.772 41.667 0.00 0.00 0.00 2.57
4900 14111 3.587061 TCTGGGAAGCCTTATGACTTGAA 59.413 43.478 0.00 0.00 0.00 2.69
4901 14112 3.181329 TCTGGGAAGCCTTATGACTTGA 58.819 45.455 0.00 0.00 0.00 3.02
4902 14113 3.198635 TCTCTGGGAAGCCTTATGACTTG 59.801 47.826 0.00 0.00 0.00 3.16
4903 14114 3.454858 TCTCTGGGAAGCCTTATGACTT 58.545 45.455 0.00 0.00 0.00 3.01
4904 14115 3.121929 TCTCTGGGAAGCCTTATGACT 57.878 47.619 0.00 0.00 0.00 3.41
4905 14116 3.914426 TTCTCTGGGAAGCCTTATGAC 57.086 47.619 0.00 0.00 0.00 3.06
4906 14117 4.042809 TGTTTTCTCTGGGAAGCCTTATGA 59.957 41.667 0.00 0.00 35.16 2.15
4907 14118 4.335416 TGTTTTCTCTGGGAAGCCTTATG 58.665 43.478 0.00 0.00 35.16 1.90
4908 14119 4.657814 TGTTTTCTCTGGGAAGCCTTAT 57.342 40.909 0.00 0.00 35.16 1.73
4909 14120 4.567747 GGATGTTTTCTCTGGGAAGCCTTA 60.568 45.833 0.00 0.00 35.16 2.69
4910 14121 3.425659 GATGTTTTCTCTGGGAAGCCTT 58.574 45.455 0.00 0.00 35.16 4.35
4911 14122 2.291217 GGATGTTTTCTCTGGGAAGCCT 60.291 50.000 0.00 0.00 35.16 4.58
4912 14123 2.095461 GGATGTTTTCTCTGGGAAGCC 58.905 52.381 0.00 0.00 35.16 4.35
4913 14124 2.751806 CAGGATGTTTTCTCTGGGAAGC 59.248 50.000 0.00 0.00 35.16 3.86
4914 14125 3.245052 ACCAGGATGTTTTCTCTGGGAAG 60.245 47.826 12.12 0.00 42.55 3.46
4915 14126 2.716424 ACCAGGATGTTTTCTCTGGGAA 59.284 45.455 12.12 0.00 42.55 3.97
4916 14127 2.040278 CACCAGGATGTTTTCTCTGGGA 59.960 50.000 12.12 0.00 42.55 4.37
4917 14128 2.040278 TCACCAGGATGTTTTCTCTGGG 59.960 50.000 12.12 2.76 42.55 4.45
4918 14129 3.423539 TCACCAGGATGTTTTCTCTGG 57.576 47.619 6.67 6.67 43.26 3.86
4919 14130 4.582869 TGATCACCAGGATGTTTTCTCTG 58.417 43.478 0.00 0.00 36.00 3.35
4920 14131 4.533707 TCTGATCACCAGGATGTTTTCTCT 59.466 41.667 0.00 0.00 43.12 3.10
4921 14132 4.836825 TCTGATCACCAGGATGTTTTCTC 58.163 43.478 0.00 0.00 43.12 2.87
4922 14133 4.288105 ACTCTGATCACCAGGATGTTTTCT 59.712 41.667 0.00 0.00 43.12 2.52
4923 14134 4.583871 ACTCTGATCACCAGGATGTTTTC 58.416 43.478 0.00 0.00 43.12 2.29
4924 14135 4.647564 ACTCTGATCACCAGGATGTTTT 57.352 40.909 0.00 0.00 43.12 2.43
4925 14136 4.042062 TGAACTCTGATCACCAGGATGTTT 59.958 41.667 0.00 0.00 43.12 2.83
4926 14137 3.584406 TGAACTCTGATCACCAGGATGTT 59.416 43.478 0.00 0.00 43.12 2.71
4927 14138 3.176411 TGAACTCTGATCACCAGGATGT 58.824 45.455 0.00 0.00 43.12 3.06
4928 14139 3.900966 TGAACTCTGATCACCAGGATG 57.099 47.619 0.00 0.00 43.12 3.51
4929 14140 3.843027 ACTTGAACTCTGATCACCAGGAT 59.157 43.478 0.00 0.00 43.12 3.24
4930 14141 3.242867 ACTTGAACTCTGATCACCAGGA 58.757 45.455 0.00 0.00 43.12 3.86
4931 14142 3.007290 TGACTTGAACTCTGATCACCAGG 59.993 47.826 0.00 0.00 43.12 4.45
4932 14143 4.263018 TGACTTGAACTCTGATCACCAG 57.737 45.455 0.00 0.00 44.27 4.00
4933 14144 4.141733 TGTTGACTTGAACTCTGATCACCA 60.142 41.667 0.00 0.00 0.00 4.17
4934 14145 4.380531 TGTTGACTTGAACTCTGATCACC 58.619 43.478 0.00 0.00 0.00 4.02
4935 14146 5.176590 GTCTGTTGACTTGAACTCTGATCAC 59.823 44.000 0.00 0.00 39.94 3.06
4936 14147 5.292765 GTCTGTTGACTTGAACTCTGATCA 58.707 41.667 0.00 0.00 39.94 2.92
4937 14148 5.837586 GTCTGTTGACTTGAACTCTGATC 57.162 43.478 0.00 0.00 39.94 2.92
4950 14161 5.010213 ACCACTCTCTAGAAAGTCTGTTGAC 59.990 44.000 0.00 0.00 43.22 3.18
4951 14162 5.141182 ACCACTCTCTAGAAAGTCTGTTGA 58.859 41.667 0.00 0.00 0.00 3.18
4952 14163 5.010112 TGACCACTCTCTAGAAAGTCTGTTG 59.990 44.000 0.00 0.00 0.00 3.33
4953 14164 5.141182 TGACCACTCTCTAGAAAGTCTGTT 58.859 41.667 0.00 0.00 0.00 3.16
4954 14165 4.730966 TGACCACTCTCTAGAAAGTCTGT 58.269 43.478 0.00 0.00 0.00 3.41
4955 14166 5.007034 TCTGACCACTCTCTAGAAAGTCTG 58.993 45.833 0.00 2.62 0.00 3.51
4956 14167 5.222048 ACTCTGACCACTCTCTAGAAAGTCT 60.222 44.000 0.00 0.00 0.00 3.24
4957 14168 5.007682 ACTCTGACCACTCTCTAGAAAGTC 58.992 45.833 0.00 0.00 0.00 3.01
4958 14169 4.993028 ACTCTGACCACTCTCTAGAAAGT 58.007 43.478 0.00 0.00 0.00 2.66
4959 14170 5.475220 TGAACTCTGACCACTCTCTAGAAAG 59.525 44.000 0.00 0.00 0.00 2.62
4960 14171 5.386060 TGAACTCTGACCACTCTCTAGAAA 58.614 41.667 0.00 0.00 0.00 2.52
4961 14172 4.986783 TGAACTCTGACCACTCTCTAGAA 58.013 43.478 0.00 0.00 0.00 2.10
4962 14173 4.642466 TGAACTCTGACCACTCTCTAGA 57.358 45.455 0.00 0.00 0.00 2.43
4963 14174 4.764823 ACTTGAACTCTGACCACTCTCTAG 59.235 45.833 0.00 0.00 0.00 2.43
4964 14175 4.730966 ACTTGAACTCTGACCACTCTCTA 58.269 43.478 0.00 0.00 0.00 2.43
4965 14176 3.571590 ACTTGAACTCTGACCACTCTCT 58.428 45.455 0.00 0.00 0.00 3.10
4966 14177 3.319405 TGACTTGAACTCTGACCACTCTC 59.681 47.826 0.00 0.00 0.00 3.20
4967 14178 3.300388 TGACTTGAACTCTGACCACTCT 58.700 45.455 0.00 0.00 0.00 3.24
4968 14179 3.735237 TGACTTGAACTCTGACCACTC 57.265 47.619 0.00 0.00 0.00 3.51
4969 14180 3.643320 TGATGACTTGAACTCTGACCACT 59.357 43.478 0.00 0.00 0.00 4.00
4970 14181 3.993081 CTGATGACTTGAACTCTGACCAC 59.007 47.826 0.00 0.00 0.00 4.16
4971 14182 3.007290 CCTGATGACTTGAACTCTGACCA 59.993 47.826 0.00 0.00 0.00 4.02
4972 14183 3.594134 CCTGATGACTTGAACTCTGACC 58.406 50.000 0.00 0.00 0.00 4.02
4973 14184 2.999355 GCCTGATGACTTGAACTCTGAC 59.001 50.000 0.00 0.00 0.00 3.51
5113 14460 5.005740 AGCAATACTCTCATTCAACTGCAA 58.994 37.500 0.00 0.00 0.00 4.08
5117 14464 6.047511 ACTCAGCAATACTCTCATTCAACT 57.952 37.500 0.00 0.00 0.00 3.16
5184 14579 6.319658 AGAAGAATGCACAAGTAACCATATGG 59.680 38.462 20.68 20.68 42.17 2.74
5190 14589 5.239525 ACAGAAGAAGAATGCACAAGTAACC 59.760 40.000 0.00 0.00 0.00 2.85
5219 14737 7.621428 AGAAATTCGAATGTGATCACAGAAT 57.379 32.000 30.63 27.43 45.48 2.40
5294 14830 8.691661 ATATTTGTGTCTTCCATAACATACCC 57.308 34.615 0.00 0.00 0.00 3.69
5303 14846 6.015180 ACAAGTGCAATATTTGTGTCTTCCAT 60.015 34.615 6.41 0.00 37.77 3.41
5356 14899 6.757237 TCATCCACATTGCTGTAAACAAAAT 58.243 32.000 0.00 0.00 33.14 1.82
5622 15188 8.495949 GTTGTATTCATCCCTGTAAATATGTCG 58.504 37.037 0.00 0.00 0.00 4.35
5733 15312 0.332632 TTCCCAAGCCATTCCTGGAG 59.667 55.000 0.00 0.00 46.37 3.86
5758 15337 0.107456 AGCACCAGGTTGTGACTCAG 59.893 55.000 0.00 0.00 38.55 3.35
5780 15360 9.548208 GAAAGTACTGCAAAAGATAAGATGAAC 57.452 33.333 0.00 0.00 0.00 3.18
5784 15364 8.854614 ACAGAAAGTACTGCAAAAGATAAGAT 57.145 30.769 0.00 0.00 41.06 2.40
5785 15365 8.559536 CAACAGAAAGTACTGCAAAAGATAAGA 58.440 33.333 0.00 0.00 41.06 2.10
5786 15366 7.805071 CCAACAGAAAGTACTGCAAAAGATAAG 59.195 37.037 0.00 0.00 41.06 1.73
5807 15387 6.167685 ACATACGAGTTATTACAAGCCAACA 58.832 36.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.